<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:25:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726759" ref_strand="+" ref_description="SGN-E726759 [LA12DA02]">
      <seq>attgtgtggctatactagttacttgccttatctagtcattgagtgattctcatcatctttctagtaatctactatttttttctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9566" stop="12768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9864" g_stop="10045" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="436" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="554" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="737" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12468" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="936" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E726759" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9864" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTGGCTATACTAGTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAA</genome_strand>
        <mrna_strand>ATTGTGTGGCTATACTAGTTACTTGCCTTATCTAGTCATTGAGTGATTCTCATCATCTTTCTAGTAATCTACTATTTTTTTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727668" ref_strand="+" ref_description="SGN-E727668 [LA15BE08]">
      <seq>gttacttgccttatctagtcattgagtgattctcatcatctttctagtaatctactatttttttctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9581" stop="12729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9881" g_stop="10045" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="419" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="537" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="720" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12429" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="880" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E727668" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9881" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTAC</genome_strand>
        <mrna_strand>GTTACTTGCCTTATCTAGTCATTGAGTGATTCTCATCATCTTTCTAGTAATCTACTATTTTTTTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245642" ref_strand="+" ref_description="SGN-E245642 [cLEF-43-D12]">
      <seq>ttgagtgactctcatcatctttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9602" stop="11601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9902" g_stop="10045" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="398" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="516" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11301" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="605" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E245642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9902" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGT</genome_strand>
        <mrna_strand>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261043" ref_strand="+" ref_description="SGN-E261043 [cLEG-55-P15]">
      <seq>tttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattnatagtagtatataatattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9621" stop="12716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9921" g_stop="10045" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="379" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="497" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="680" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="827" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E261043" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9921" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG-AAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</genome_strand>
        <mrna_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTNATAGTAGTATATAATATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333806" ref_strand="+" ref_description="SGN-E333806 [cTOD-22-F22]">
      <seq>tttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9621" stop="12628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9921" g_stop="10045" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="379" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="497" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="680" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12328" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="739" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E333806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9921" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGT</genome_strand>
        <mrna_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297511" ref_strand="+" ref_description="SGN-E297511 [cLET-28-B3]">
      <seq>taatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtggctgaatggctcaaaactcatgcacctggaactcgaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9628" stop="11424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9928" g_stop="10045" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="372" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11124" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="473" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9928" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCC</genome_strand>
        <mrna_strand>TAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGGCTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341858" ref_strand="+" ref_description="SGN-E341858 [cTOF-9-B24]">
      <seq>ttgttctctacattacaagaataacatccccatccacttcctctcttctaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtgggtgtttgttccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9638" stop="12627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9938" g_stop="10045" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="361" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="479" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="662" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12327" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="721" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E341858" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9938" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGT-GGTGTTTGTTCCATGGG</genome_strand>
        <mrna_strand>TTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCT-AACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGGTGTTTGTTCCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279054" ref_strand="-" ref_description="SGN-E279054 [cLEL-4-K13](-)">
      <seq>gcacgagcaagaataacatccccatccacttcctctcttctcaacacgcacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9648" stop="10749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9947" g_stop="10045" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10449" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="348" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E279054" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279054" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9947" e_stop="10045"/>
          <exon e_start="10202" e_stop="10449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTA-CAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACC</genome_strand>
        <mrna_strand>GCACGAGCAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACGCACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553924" ref_strand="+" ref_description="SGN-E553924 [cTSC-2-K21]">
      <seq>cattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattnatagtagtatataatattctcttgtaccattgttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9648" stop="12731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9948" g_stop="10045" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="352" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="470" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="653" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12431" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="815" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E553924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9948" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACAT</genome_strand>
        <mrna_strand>CATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTNATAGTAGTATATAATATTCTCTTGTACCATTGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620971" ref_strand="+" ref_description="SGN-E620971 [71678]">
      <seq>tgacaagaataacatccatccacttcctctcttctcaacacacattaacatggcttcttccacactctctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtgtggcagctagcattccagcagatgatagagtgcctgatatggaacaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttcttttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcaactcaccttggttgtgtcgtgccatggaatactgctgaagaaccaagttcatttgcccttggcatggatctcaatacaacaatcaaggaaaaagttgttagaggaccttgctcttttgtccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9667" stop="11697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9950" g_stop="10045" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.88"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="341" r_length="253" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="459" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="647" r_length="188" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E620971" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9950" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGG-AGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTC-TTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGC-ACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG-AGAA-CAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGG-AAAAGTTGTTAGAGGACC-TGCTCCTTTA</genome_strand>
        <mrna_strand>TGACAAGAATAACAT--CCATCCACTTCCTCTCTTCTC-A-ACACAC----ATTAACATGGCTTCTTCCACACTCTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTGTGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAACAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCAACTCACCTTGGTTGTGTCGTGCCATGGAATACTGCTGAAGAACCAAGTTCATTTGCCCTTGGCATGGATCTCAATACAACAATCAAGGAAAAAGTTGTTAGAGGACCTTGCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211792" ref_strand="+" ref_description="SGN-E211792 [cLEC-66-D11]">
      <seq>gaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9656" stop="11598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9956" g_stop="10045" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="344" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="462" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11298" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="548" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E211792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9956" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGT</genome_strand>
        <mrna_strand>GAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554238" ref_strand="+" ref_description="SGN-E554238 [cTSC-3-K21]">
      <seq>aataacatccccatccacattcctctcttctcaacacacacattaattaacatgtgcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgcatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9657" stop="10738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9957" g_stop="10045" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10438" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="328" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E554238" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9957" e_stop="10045"/>
          <exon e_start="10202" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACATCCCCATCCAC-TTCCTCTCTTCTCAACACACACATTAATTAACATG-GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACT</genome_strand>
        <mrna_strand>AATAACATCCCCATCCACATTCCTCTCTTCTCAACACACACATTAATTAACATGTGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGCATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568919" ref_strand="+" ref_description="SGN-E568919 [13277]">
      <seq>catccatccacttcctctcttctcaacacacattaacatggcttcttccactctttctcatgtaattccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgcttgtgaagccgatgacgattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggctgctagtattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggacgaatgatggaacactcgcgacctatggtatcaatgccgtgtgcactcaccttggttgtgttgtgccgtggaatactgcttgaggaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9667" stop="11626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9962" g_stop="10045" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.90"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="327" r_length="251" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="445" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11326" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="562" r_length="117" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E568919" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9962" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGA-GAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGC-TGA-GAACAAG</genome_strand>
        <mrna_strand>CAT--CCATCCACTTCCTCTCTTCTCA--ACACAC----ATTAACATGGCTTCTTCCACTCTTTCTCATGTAATTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGACGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCTGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGACGAATGATGGAACACTCGCGACCTATGGTATCAATGCCGTGTGCACTCACCTTGGTTGTGTTGTGCCGTGGAATACTGCTTGAGGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390593" ref_strand="+" ref_description="SGN-E390593 [TUS-47-A12]">
      <seq>tccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgggaaaaaccatggaacactcacgacctatgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9664" stop="11569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9964" g_stop="10045" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="336" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="454" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11269" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="511" r_length="57" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E390593" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9964" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATC</genome_strand>
        <mrna_strand>TCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGGGAAAAACCATGGAACACTCACGACCTATGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283072" ref_strand="+" ref_description="SGN-E283072 [cLER-17-J12]">
      <seq>ccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9665" stop="11430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9965" g_stop="10045" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="335" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11130" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="442" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9965" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACAC</genome_strand>
        <mrna_strand>CCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342261" ref_strand="+" ref_description="SGN-E342261 [cTOF-8-K23]">
      <seq>ccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtgggatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaagaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9667" stop="12602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9967" g_stop="10045" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="333" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="633" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12302" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="666" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9967" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGAT</genome_strand>
        <mrna_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGGATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA-GAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324451" ref_strand="+" ref_description="SGN-E324451 [cTOC-6-O15]">
      <seq>ccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9667" stop="11665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9967" g_stop="10045" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="333" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11365" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="604" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E324451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9967" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA</genome_strand>
        <mrna_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725503" ref_strand="+" ref_description="SGN-E725503 [LA03DD02]">
      <seq>catccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcacaactcatgcacctggcactcgaaccctgacacaaggactaaagggagatcctacttaccttgttgtggatgacgatggacactcgcgacctatgtatcaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9668" stop="11576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9968" g_stop="10045" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="332" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="450" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11276" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="512" r_length="62" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E725503" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9968" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTG</genome_strand>
        <mrna_strand>CATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCACAACTCATGCACCTGGCACTCGAACCCTGACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGATGACGATGG-ACACTCGCGACCTAT-GTATCAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340571" ref_strand="+" ref_description="SGN-E340571 [cTOF-1-E3]">
      <seq>ccactttctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9671" stop="11651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9971" g_stop="10045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="329" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="447" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11351" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="586" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E340571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9971" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</genome_strand>
        <mrna_strand>CCACTTTCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216952" ref_strand="-" ref_description="SGN-E216952 [cLEL-1-K3](-)">
      <seq>tgcttcctctcttctcaacacacacattaattaacatggcttctttcactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataatacgaggatgaaagtgaaatgtatggcagctagcattccagctgatgatagagtgcctgatatggtgaaaaggaatcctatgaatttgcttttattgggtgcacttgcttcaccaactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9674" stop="10715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9972" g_stop="10045" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10415" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="288" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E216952" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216952" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9972" e_stop="10045"/>
          <exon e_start="10202" e_stop="10415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTG</genome_strand>
        <mrna_strand>TGCTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTTCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATACGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCTGATGATAGAGTGCCTGATATGGTGAAAAGGAATCCTATGAATTTGCTTTTATTGGGTGCACTTGCTTCACCAACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299038" ref_strand="+" ref_description="SGN-E299038 [cLET-42-J16]">
      <seq>tcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9676" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9976" g_stop="10045" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="324" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="442" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11372" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="602" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E299038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9976" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</genome_strand>
        <mrna_strand>TCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321013" ref_strand="+" ref_description="SGN-E321013 [cTOB-13-L9]">
      <seq>ctctcttctcaaccacacacattaattaacatggcttcttccacctctttctcatgtaacctccttctcagctatgctcaagccaaaagtggtatttcatcggtttcaccaagcccttgcttgtgaagccgatgaagaattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttatttgggtgccaccttgctttacccaacctggtggaatgcttgtacccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcccctggaactcgaaccctcacaccaaggactaaagggagatcctacttaccttgttgtggagaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9678" stop="11544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9978" g_stop="10045" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="335" r_length="264" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="454" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11244" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="486" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321013" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9978" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTCAA-CACACACATTAATTAACATGGCTTCTTCCA-CTCTTTCTCATGTAA-CTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAG-CAAAAGTGGTATTTCATCGGTTTCA-CAAG-CCTTGCTTGTGAAGCCGATGAAG-ATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTA-TTGGGTG-CA-CTTGCTTTA-CCAA-CTGGTGGAATGCTTGTA-CCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACA-CAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGA</genome_strand>
        <mrna_strand>CTCTCTTCTCAACCACACACATTAATTAACATGGCTTCTTCCACCTCTTTCTCATGTAACCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCCAAAAGTGGTATTTCATCGGTTTCACCAAGCCCTTGCTTGTGAAGCCGATGAAGAATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTTGGGTGCCACCTTGCTTTACCCAACCTGGTGGAATGCTTGTACCCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCCCCTGGAACTCGAACCCTCACACCAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347825" ref_strand="+" ref_description="SGN-E347825 [cTOF-26-H6]">
      <seq>tctcttctcacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaaagtgntagaggacctgctcctttatccttggcattggctcatgcagnacgtgatgatgggaaagtggtgtttgttccatgggttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9679" stop="12632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9979" g_stop="10045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="320" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="438" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="621" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="684" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E347825" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9979" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAA</genome_strand>
        <mrna_strand>TCTCTTCTC-ACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAAGTGNTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGNACGTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348944" ref_strand="+" ref_description="SGN-E348944 [cTOF-29-I2]">
      <seq>tctcttctcacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9679" stop="11444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9979" g_stop="10045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="320" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="438" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11225" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="451" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E348944" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9979" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTT</genome_strand>
        <mrna_strand>TCTCTTCTC-ACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458428" ref_strand="+" ref_description="SGN-E458428 [cPRO-5-P3]">
      <seq>ctcttctcaacacacattaacatggcttcttccacactctctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcaccggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccatggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaanggaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaannggtggtgttgttccatgggttgaaacagacttcagaactggtgattctccatggtgggcttagaaatcccatcntacttttatttatattagnatatatattctcttggatcttttgttacatagaagcttattcccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9701" stop="12750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9985" g_stop="10045" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.90"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="311" r_length="251" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="429" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="612" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="794" r_length="182" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E458428" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9985" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA-A-GTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTA-CCATTGTTACATAGAAGCTTATTCCCCTTTT</genome_strand>
        <mrna_strand>CTCTTCTCA-ACACACATTAACATGGCTTCTTCCACACTCTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCACCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCATGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAANGGAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAANNGGTGGTG-TTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATTCTCCATGGTGGGCTTAGAAATCCCATCNTACTTTTATTTATATTAGNATAT-ATATTCTCTTGGATCTTTTGTTACATAGAAGCTTATTCCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409985" ref_strand="+" ref_description="SGN-E409985 [PPI-15-N21]">
      <seq>ctcaacacacacattaactggcttcttccctctttctcatgtaactccttctcactatgctcaagcaaaagtggtgtttcatctgtttcacaagcgttgcttgtgaagccgatgaaattaatggtcatggaatgggaaaaataagaggatgaaagtaaatgtatggcactacattccacagatgatagagtgcctgatatggaaaaaagaatctcatgaatttgcttttattgggtgctcttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtatagtggtaccattgccaaagatgctaatggcaatgatgtgttgtaactgaatggctcaaactcattccctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9701" stop="11603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9985" g_stop="10045" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.86"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="298" r_length="244" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="412" r_length="114" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11303" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="503" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E409985" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9985" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGC</genome_strand>
        <mrna_strand>CTCAACACACAC----ATTAAC-TGGCTTCTTCC-CTCTTTCTCATGTAACTCCTTCTCA-............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCTGTTTCACAAGCGTTGCTTGTGAAGCCGATGAA-ATTAATGGTCATGGAATGGG-AA--A-AATAAGAGGATGAAAGT-AAATGTATGGCA-CTA-CATTCCA-CAGATGATAGAGTGCCTGATATGGA-AAAAAGAATCTCATGAATTTGCTTTTATTGGGTGCTCTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTA-TAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATG-TGTTGTAACTGAATGGCTC-AAACTCATTC-CCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329545" ref_strand="+" ref_description="SGN-E329545 [cTOD-11-A18]">
      <seq>caacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9687" stop="11618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9987" g_stop="10045" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="313" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="431" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11318" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="537" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E329545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9987" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</genome_strand>
        <mrna_strand>CAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732578" ref_strand="+" ref_description="SGN-E732578 [LB02CC06]">
      <seq>attaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9697" stop="12798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9997" g_stop="10045" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="303" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="421" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="604" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12498" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="834" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E732578" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9997" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAA</genome_strand>
        <mrna_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314101" ref_strand="+" ref_description="SGN-E314101 [cTOA-19-B14]">
      <seq>attaattaacatggcttcttccactctttctcatggaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9697" stop="11618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9997" g_stop="10045" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="303" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="421" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11318" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="527" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E314101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9997" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</genome_strand>
        <mrna_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGGAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740896" ref_strand="+" ref_description="SGN-E740896 [LC23BD12]">
      <seq>aattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttggaattgtttattatcatttcatttttattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9700" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10000" g_stop="10045" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="300" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="418" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="601" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12570" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="903" r_length="302" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E740896" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10000" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGT</genome_strand>
        <mrna_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGGAATTGTTTATTATCATTTCATTTTTATTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739919" ref_strand="+" ref_description="SGN-E739919 [LC19BD07]">
      <seq>aattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaaatacatttctcatttgggatacagntctttttgnaattgttaattatcatttcatttttattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9700" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10000" g_stop="10045" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="300" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="418" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="601" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12569" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="902" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E739919" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10000" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGG</genome_strand>
        <mrna_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAAATACATTTCTCATTTGGGATACAGNTCTTTTTGNAATTGTTAATTATCATTTCATTTTTATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737501" ref_strand="+" ref_description="SGN-E737501 [LC10AD12]">
      <seq>cccccgggctgcaggaatcggcacgaggaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaattgtaactattgaaacattacccaaaataacaatttctcattttgggaaacagttctttttggtaattgttttattaccatttcatttttattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9694" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10000" g_stop="10045" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="74" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="328" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="446" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="629" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="931" r_length="302" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E737501" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10000" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAA-TGTAACTATTGAAACATTACCCAAAATAAC-ATTTCTCA-TTTGGGATACAGTTCTTTTT-GTAATTG-TTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATTGTAACTATTGAAACATTACCCAAAATAACAATTTCTCATTTTGGGAAACAGTTCTTTTTGGTAATTGTTTTATTACCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740942" ref_strand="+" ref_description="SGN-E740942 [LC23CD04]">
      <seq>aattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9700" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10000" g_stop="10045" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="300" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="418" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="601" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="898" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E740942" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10000" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>AATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730205" ref_strand="+" ref_description="SGN-E730205 [LA23BF03]">
      <seq>ctgcaggaattcggcacgaggattaacttggcttcttccactttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaaatggtgtttgttccatgggttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9701" stop="12634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10001" g_stop="10045" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="66" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="317" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="435" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="618" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12334" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="683" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E730205" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10001" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAAC</genome_strand>
        <mrna_strand>ATTAACTTGGCTTCTTCCACTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAATGGTGTTTGTTCCATGGGTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295462" ref_strand="+" ref_description="SGN-E295462 [cLET-23-P8]">
      <seq>gatcccccgggctgcaggattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9701" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10001" g_stop="10045" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="63" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="317" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="435" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="498" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E295462" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10001" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471974" ref_strand="+" ref_description="SGN-E471974 [cSTB-27-C7]">
      <seq>ctgcaggaattcggcacgaggcacacattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcatctgtttcacaagcgttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaagataagaggatgaaagttaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaagaaatctcatgaatttgcttttattgggtgctcttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9701" stop="11429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10001" g_stop="10045" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="71" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="322" r_length="251" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11129" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="428" r_length="106" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E471974" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10001" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACA</genome_strand>
        <mrna_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCTGTTTCACAAGCGTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAA--A-GATAAGAGGATGAAAGTTAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGAAATCTCATGAATTTGCTTTTATTGGGTGCTCTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734129" ref_strand="+" ref_description="SGN-E734129 [LB11DD11]">
      <seq>ttaacatggcttcctcctctttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9702" stop="12809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10002" g_stop="10045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.93"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="295" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="413" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="596" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12509" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="837" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734129" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10002" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATT</genome_strand>
        <mrna_strand>TTAACATGGCTTCCTCCTCTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321569" ref_strand="+" ref_description="SGN-E321569 [cTOB-25-K21]">
      <seq>ttaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggggaaagtggtgtttgttccatgggttngaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattattagtagtatataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9702" stop="12711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10002" g_stop="10045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="298" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="599" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12411" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="741" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10002" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGAT-GGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</genome_strand>
        <mrna_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGGAAAGTGGTGTTTGTTCCATGGGTTNGAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322140" ref_strand="+" ref_description="SGN-E322140 [cTOB-24-A22]">
      <seq>ttaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattattagtagatataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9702" stop="12711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10002" g_stop="10045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="298" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="599" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12411" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="739" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E322140" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10002" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</genome_strand>
        <mrna_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTATTAGTAG-ATATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278810" ref_strand="+" ref_description="SGN-E278810 [cLER-2-J5]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9703" stop="11592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11292" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="495" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E278810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299266" ref_strand="+" ref_description="SGN-E299266 [cLET-43-M12]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcatgaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9703" stop="11591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="494" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E299266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282552" ref_strand="+" ref_description="SGN-E282552 [cLER-18-L5]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaagtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9703" stop="11586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11286" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="489" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCA</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAAGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291260" ref_strand="+" ref_description="SGN-E291260 [cLET-2-L14]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactgggggaatgcttgtaccttatgctactttctttgcacctcctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9703" stop="10757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGGGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282834" ref_strand="+" ref_description="SGN-E282834 [cLER-15-M24]">
      <seq>aacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9704" stop="11531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10004" g_stop="10045" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="296" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="414" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11231" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="433" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10004" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTG</genome_strand>
        <mrna_strand>AACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732967" ref_strand="+" ref_description="SGN-E732967 [LB03CE04]">
      <seq>cgattgcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagntctttttggaattgtttatatcatttcattttaattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9707" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10005" g_stop="10045" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.93"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="295" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="413" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="596" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12568" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="895" r_length="299" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E732967" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10005" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTG</genome_strand>
        <mrna_strand>CGATTGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGNTCTTTTTGGAATTGTTTA-TATCATTTCATTTTAATTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733300" ref_strand="+" ref_description="SGN-E733300 [LB04CA08]">
      <seq>catgtgcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgaaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9706" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10006" g_stop="10045" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.95"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="295" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="413" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="596" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12590" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="918" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="919" polyA_stop="932"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E733300" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10006" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATG-GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</genome_strand>
        <mrna_strand>CATGTGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGAAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358682" ref_strand="+" ref_description="SGN-E358682 [cLHT-22-N3]">
      <seq>gagggccttcttccactttttctcatgtaacctccttctcagctatgctcaagcaaaagtggtctttcatcggtttcaccaagcgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9895" stop="11653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10006" g_stop="10045" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.82"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="294" r_length="252" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11353" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="553" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E358682" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10006" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGG-CTTCTTCCACTCTTTCTCATGTAA-CTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCA-CAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAA</genome_strand>
        <mrna_strand>GAGGGCCTTCTTCCACTTTTTCTCATGTAACCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACCAAGCGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGGAT---AAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734799" ref_strand="+" ref_description="SGN-E734799 [LB13CE04]">
      <seq>atggcttcttccactttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9707" stop="12814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="290" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12514" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="837" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734799" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGA</genome_strand>
        <mrna_strand>ATGGCTTCTTCCACTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734574" ref_strand="+" ref_description="SGN-E734574 [LB13AB04]">
      <seq>atggcttcttccactttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaagggaaaaaaaaatgtaactattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9707" stop="12782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="290" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12482" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="806" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734574" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAA-GG-AAAAAAAATGTAACTATTGAA</genome_strand>
        <mrna_strand>ATGGCTTCTTCCACTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGGAAAAAAAAATGTAACTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727267" ref_strand="+" ref_description="SGN-E727267 [LA14AH04]">
      <seq>ccgttttcttccactctttctcatgtaactccttctcagctacgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttanaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9712" stop="12757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="293" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="411" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="594" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12457" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="782" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E727267" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATA</genome_strand>
        <mrna_strand>CCGTTTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTACGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTANAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624257" ref_strand="+" ref_description="SGN-E624257 [GI|37222948]">
      <seq>atggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagcgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgctcttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaaggtggtgtttgttccatgggttgaaacagacttcagaactggtgattctccatggtgggcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9707" stop="12671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="290" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12371" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="693" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E624257" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG</genome_strand>
        <mrna_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGCGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCTCTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATTCTCCATGGTGGGCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729272" ref_strand="+" ref_description="SGN-E729272 [LA20CB10]">
      <seq>agggcttcttccactttttntnatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9707" stop="12639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="290" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12339" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="661" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E729272" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACT</genome_strand>
        <mrna_strand>AGGGCTTCTTCCACTTTTTNTNATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737321" ref_strand="+" ref_description="SGN-E737321 [LC09BC01]">
      <seq>ccggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgacaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcattgcacacgttgatgatgggaaaggggcgctttgttccatgggttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="12634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10007" g_stop="10045" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="293" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="411" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="594" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12334" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="661" r_length="67" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E737321" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10007" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCA-TGCAGACGTTGATGATGGGAAAGTGGTG-TTTGTTCCATGGGTTGAAAC</genome_strand>
        <mrna_strand>CCGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGACAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATTGCACACGTTGATGATGGGAAAGGGGCGCTTTGTTCCATGGGTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736482" ref_strand="+" ref_description="SGN-E736482 [LC05DG07]">
      <seq>cggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaactttacccaaataacttttctcatttggaatacagctctttttggaattgtaattaccatttcattttaatttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="43410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10008" g_stop="10045" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="292" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="410" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="593" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="887" r_length="294" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12566" i_stop="12827" i_length="262">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12828" g_stop="12839" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="899" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E736482" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10008" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="12828" e_stop="12839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATA</genome_strand>
        <mrna_strand>CGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACTTTACCC-AAATAACTTTTCTCATTTGGAATACAGCTCTTTTTGGAATTG-TAATTACCATTTCA-TTTTAATTTATAAAA......................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732054" ref_strand="+" ref_description="SGN-E732054 [LB01AF04]">
      <seq>cggcttcttccactttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgaaattgtttattatcatttcatttttattttaatacagtggtgtctgaatcagtttacacgccatatagttaatttccctgaatgtttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="12920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10008" g_stop="10045" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="289" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="407" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="590" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12619" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="941" r_length="351" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="953"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E732054" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10008" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACT</genome_strand>
        <mrna_strand>CGGCTTCTTCCACTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGAAATTGTTTATTATCATTTCATTTTTATTTTAATACAGTGGTGTCTGAATCAGTTTACACGCCATATAGTTAATTTCCCTGAATGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734853" ref_strand="+" ref_description="SGN-E734853 [LB13DB01]">
      <seq>ggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaaggaaaaaaaatgtaactattgaaacattacccaaaatacatttctcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="12813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10009" g_stop="10045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="291" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="409" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="592" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12513" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="836" r_length="244" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734853" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10009" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTAT-AAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGG</genome_strand>
        <mrna_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAAT-ACATTTCTCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612812" ref_strand="+" ref_description="SGN-E612812 [62579]">
      <seq>ggcttcttccactctttctcatgtaattccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgcttgtgaagccgatgacgattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggctgctagtattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaatgatggaacactcgcgacctatggtatcaatgccgtgtgcactcaccttggttgtgttgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaacgttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaaggtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctaacttttattattattagtcaaattatattctcttgtatcattgtttacgtagaagcttattcctctttttataaacgaacaacacatgtaactattgaaaccattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="12791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10009" g_stop="10045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="288" r_length="251" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="406" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="590" r_length="184" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12491" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="813" r_length="223" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E612812" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10009" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAA-GTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGT-ATATAATATTCTCTTGTACCATTG-TTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAA-CATTACCC</genome_strand>
        <mrna_strand>GGCTTCTTCCACTCTTTCTCATGTAATTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGACGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCTGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAATGATGGAACACTCGCGACCTATGGTATCAATGCCGTGTGCACTCACCTTGGTTGTGTTGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAACGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAACTTTTATTATTATTAGTCAAATTATATTCTCTTGTATCATTGTTTACGTAGAAGCTTATTCCTCTTTTTA-TA-AACGAACAACACATGTAACTATTGAAACCATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726304" ref_strand="+" ref_description="SGN-E726304 [LA11BG06]">
      <seq>ggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttaaaaatcccatctagcttctattattagtagtatataatattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="12716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10009" g_stop="10045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="291" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="409" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="592" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="739" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E726304" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10009" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</genome_strand>
        <mrna_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAAAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283686" ref_strand="+" ref_description="SGN-E283686 [cLES-1-P12]">
      <seq>ggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9709" stop="10747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10009" g_stop="10045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10447" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="283" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10009" e_stop="10045"/>
          <exon e_start="10202" e_stop="10447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCA</genome_strand>
        <mrna_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735423" ref_strand="+" ref_description="SGN-E735423 [LC01CB08]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgaaattgtttattatcatttcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12554" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="877" r_length="286" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E735423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGAAATTGTTTATTATCATTTCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735208" ref_strand="+" ref_description="SGN-E735208 [LB14CH07]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12533" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="856" r_length="265" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="860" polyA_stop="872"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E735208" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737736" ref_strand="+" ref_description="SGN-E737736 [LC11AB12]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12526" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="849" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E737736" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732547" ref_strand="+" ref_description="SGN-E732547 [LB02BH07]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattaccccaaaataccatttctcatttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12514" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="838" r_length="247" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E732547" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTA-CCCAAAATAACATTTCTCATTTGGGA</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCCAAAATACCATTTCTCATTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737875" ref_strand="+" ref_description="SGN-E737875 [LC11CB12]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaagggaaaaaaaatgtaactattggaaacattaccccaaaataacattttctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12508" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="834" r_length="243" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E737875" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAA-GGAAAAAAAATGTAACTATT-GAAACATTA-CCCAAAATAACA-TTTCTCAT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGGAAAAAAAATGTAACTATTGGAAACATTACCCCAAAATAACATTTTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731239" ref_strand="+" ref_description="SGN-E731239 [LA26CC02]">
      <seq>gcttcttccactttttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggntggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="12722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="287" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="405" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="588" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12422" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="741" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E731239" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCA</genome_strand>
        <mrna_strand>GCTTCTTCCACTTTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGNTGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729310" ref_strand="+" ref_description="SGN-E729310 [LA20CF10]">
      <seq>gctctcttccctttttatacatgtaactccttgtcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgaggaatactgctgagaacaagttcatttggccttgccatggatctcaatacaacaatcaaggaaaagttgatagaggacctgctcctttgtccttggcattggctcatgcagacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9887" stop="12594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="288" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="406" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="589" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12294" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="614" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E729310" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCT-TCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACG</genome_strand>
        <mrna_strand>GCTCTCTTCCCTTTTTATACATGTAACTCCTTGTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGGATAA---GAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGAGGAATACTGCTGAGAACAAGTTCATTTGGCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGATAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294989" ref_strand="+" ref_description="SGN-E294989 [cLET-17-H20]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9710" stop="11674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11374" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="570" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344831" ref_strand="+" ref_description="SGN-E344831 [cTOF-21-G8]">
      <seq>cttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9711" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10011" g_stop="10045" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="289" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="407" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="589" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12307" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="627" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E344831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10011" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</genome_strand>
        <mrna_strand>CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGG-AAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245446" ref_strand="+" ref_description="SGN-E245446 [cLEF-43-C9]">
      <seq>ttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9712" stop="11660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10012" g_stop="10045" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="288" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="406" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11360" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="554" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E245446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10012" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACA</genome_strand>
        <mrna_strand>TTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726256" ref_strand="+" ref_description="SGN-E726256 [LA11BB10]">
      <seq>cttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgtcgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttaaaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacataaaagcttattccccttttattaataaggaaaaaaaaatgtaactattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9714" stop="12781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10014" g_stop="10045" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="286" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="404" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="587" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12481" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="799" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E726256" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10014" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGA</genome_strand>
        <mrna_strand>CTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTCGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAAAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAAAAGCTTATTCCCCTTTTATTAATAAGGAAAAAAAAATGTAACTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253876" ref_strand="+" ref_description="SGN-E253876 [cLEG-28-N10]">
      <seq>ttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9715" stop="12609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10015" g_stop="10045" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="285" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="403" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="586" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12309" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="626" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E253876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10015" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG</genome_strand>
        <mrna_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288213" ref_strand="+" ref_description="SGN-E288213 [cLES-7-L10]">
      <seq>ttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9715" stop="12608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10015" g_stop="10045" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="285" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="403" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="586" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12308" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="625" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E288213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10015" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAA</genome_strand>
        <mrna_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615729" ref_strand="+" ref_description="SGN-E615729 [65531]">
      <seq>tccactctttctcatgtaattccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgcttgtgaagccgatgacgattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggctgctagtattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaatgatggaacactcgcgacctatggtatcaatgccgtgtgcactcacctttggttgtgttgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggaccttgctccctttgtcctttggcattggctcatgcagacattgatgatgggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9716" stop="12609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10016" g_stop="10045" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="281" r_length="251" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="399" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="585" r_length="186" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12309" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="626" r_length="41" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E615729" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10016" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACC-TTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACC-TGCT-CCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCC-TTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG</genome_strand>
        <mrna_strand>TCCACTCTTTCTCATGTAATTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGACGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCTGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAATGATGGAACACTCGCGACCTATGGTATCAATGCCGTGTGCACTCACCTTTGGTTGTGTTGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTTGCTCCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291301" ref_strand="+" ref_description="SGN-E291301 [cLET-2-M1]">
      <seq>tccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgcgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9716" stop="11651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10016" g_stop="10045" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="284" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11351" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="541" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10016" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</genome_strand>
        <mrna_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGCGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283418" ref_strand="+" ref_description="SGN-E283418 [cLER-12-B9]">
      <seq>tccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9716" stop="11545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10016" g_stop="10045" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="284" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11245" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="435" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10016" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGAT</genome_strand>
        <mrna_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730363" ref_strand="+" ref_description="SGN-E730363 [LA23DF01]">
      <seq>cccatcagagccactctttctcatgnaactccttctcagctatccttaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggataaaaaaaaaaaaaaaaaaacccggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10017" g_stop="10045" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="39" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="293" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="411" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="594" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="844" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="845" polyA_stop="861"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E730363" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10017" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAA-AAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>CCACTCTTTCTCATGNAACTCCTTCTCAG............................................................................................................................................................CTATCCTTAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277579" ref_strand="+" ref_description="SGN-E277579 [cLER-6-I8]">
      <seq>cactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9718" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10018" g_stop="10045" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="282" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11119" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="378" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E277579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10018" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCG</genome_strand>
        <mrna_strand>CACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318611" ref_strand="+" ref_description="SGN-E318611 [cTOB-9-D17]">
      <seq>gaggtctcatgtaacctccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggcggtagtggtggtacccctgccaaagatgctaatggcaatgatgttggtgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgcgtgcactcaccttggttgtgtcctgccgaggaatactgctgagaacaagttcatttgccctcgccatggatctcaatacaacactcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9895" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10045" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="280" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="398" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="581" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E318611" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATGTAAC-TCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</genome_strand>
        <mrna_strand>GAGGTCTCATGTAACCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGCGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGGTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGCGTGCACTCACCTTGGTTGTGTCCTGCCGAGGAATACTGCTGAGAACAAGTTCATTTGCCCTCGCCATGGATCTCAATACAACACTCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723744" ref_strand="+" ref_description="SGN-E723744 [FC21CG10]">
      <seq>tctttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccttgaaatactgctgaaaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="11678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10045" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="279" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="397" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11378" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="563" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E723744" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTA</genome_strand>
        <mrna_strand>TCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCTTGAAATACTGCTGAAAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321189" ref_strand="+" ref_description="SGN-E321189 [cTOB-13-D20]">
      <seq>tctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10045" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="279" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="397" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11372" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="557" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</genome_strand>
        <mrna_strand>TCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366686" ref_strand="+" ref_description="SGN-E366686 [cLPT-17-G19]">
      <seq>tttctcatgtaactccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagcgttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccttgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacagggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="11555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10023" g_stop="10045" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="274" r_length="251" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="392" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="435" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E366686" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10023" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCG</genome_strand>
        <mrna_strand>TTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGAT---AAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCTTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAGGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408784" ref_strand="+" ref_description="SGN-E408784 [PPI-12-O3]">
      <seq>ctctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttgggttgtgtcgtgccatggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacgagctgctcctttgtccttggcattggctcatgcagacattgatgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="12606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10024" g_stop="10045" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="273" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="391" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="578" r_length="187" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="615" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E408784" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10024" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTT-GGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGAC---CTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</genome_strand>
        <mrna_strand>CTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGGTTGTGTCGTGCCATGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACGAGCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409127" ref_strand="+" ref_description="SGN-E409127 [PPI-13-O3]">
      <seq>ctctcatgtaactccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccatggaatctgttgagatgagaacatgtgccttggcccgtgccatggatctccatagaactatgcaagaaaagtcgttagaggacctgctcctttgttcttggcattggctcatgcagacattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9882" stop="12600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10024" g_stop="10045" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="273" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="391" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="578" r_length="187" r_score="0.852"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12300" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="609" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E409127" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10024" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAA--TACT--GCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATG</genome_strand>
        <mrna_strand>CTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCATGGAATCTGTTGAGATGAGAACATGTGCCTTGGCCCGTGCCATGGATCTCCATAGAACTATGCAAGAAAAGTCGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGGCATTGGCTCATGCAGACATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282000" ref_strand="+" ref_description="SGN-E282000 [cLES-2-B5]">
      <seq>ttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9881" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10024" g_stop="10045" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="276" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="394" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="457" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10024" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>TTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734937" ref_strand="+" ref_description="SGN-E734937 [LB14AA03]">
      <seq>gtatctccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattngaacattacccaaaataacatttctcatttgggataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9888" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10031" g_stop="10045" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="269" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="387" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="570" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="820" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734937" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10031" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GTATCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTNGAACATTACCCAAAATAACATTTCTCATTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340572" ref_strand="+" ref_description="SGN-E340572 [cTOF-1-E5]">
      <seq>taactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9888" stop="10706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10032" g_stop="10045" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10406" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="219" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E340572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10032" e_stop="10045"/>
          <exon e_start="10202" e_stop="10406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTAC</genome_strand>
        <mrna_strand>TAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572540" ref_strand="+" ref_description="SGN-E572540 [31709]">
      <seq>aattccttctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgcttgtgaagccgatgacgattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggctgctagtattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactatcaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagtggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaatgatggaacactcgcgacctatggtatcaatgccgtgtgcactcaccttggttgtgttgtgccgtggaatactgctgagaacaagttcatttgcccttggccatggatctcaatacaacaatcacggaacagtcgttagaggacctggctcctttggtcctttgggcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9888" stop="11697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10033" g_stop="10045" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="264" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="382" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="567" r_length="185" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E572540" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10033" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTT-GCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCT-GCTCCTTTA</genome_strand>
        <mrna_strand>AATTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGACGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCTGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTATCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGTGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAATGATGGAACACTCGCGACCTATGGTATCAATGCCGTGTGCACTCACCTTGGTTGTGTTGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGGCCATGGATCTCAATACAACAATCACGGAACAGTCGTTAGAGGACCTGGCTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297532" ref_strand="+" ref_description="SGN-E297532 [cLET-28-H16]">
      <seq>actccttctcagctatgctggagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgcgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgcggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9895" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10034" g_stop="10045" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="266" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="384" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="447" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297532" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10034" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>ACTCCTTCTCAG............................................................................................................................................................CTATGCTGGAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGCGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGCGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731234" ref_strand="+" ref_description="SGN-E731234 [LA26CB07]">
      <seq>ctccttctcagctatgctcaagcaaaagtggtctttcatcggtttcacaaacgttgcttgtgaagccaatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatnggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9895" stop="12693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10035" g_stop="10045" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="262" r_length="251" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="380" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="563" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12393" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="687" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E731234" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10035" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTA</genome_strand>
        <mrna_strand>CTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTCTTTCATCGGTTTCACAAACGTTGCTTGTGAAGCCAATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATNGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347873" ref_strand="+" ref_description="SGN-E347873 [cTOF-31-M15]">
      <seq>cttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9895" stop="12688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10038" g_stop="10045" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="262" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="380" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="563" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12388" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="682" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E347873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10038" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTC</genome_strand>
        <mrna_strand>CTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329281" ref_strand="+" ref_description="SGN-E329281 [cTOD-2-E11]">
      <seq>ttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9896" stop="12605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10039" g_stop="10045" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="261" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="379" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="562" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12305" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="598" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E329281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10039" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG</genome_strand>
        <mrna_strand>TTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289356" ref_strand="+" ref_description="SGN-E289356 [cLES-18-N2]">
      <seq>tctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggccatggcatgggaaaggataataagaggatgaacgtgaaatgtatggcctctagtattccagcatatgatatagtgcctgatatggagaaaacgaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactatatttgcacctcctggctcaagaggtggtagtggcggtacccctgccaaagatgctaacggcaatgatgttgtcgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9898" stop="11553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10040" g_stop="10045" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="260" r_length="254" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.338" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="378" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11253" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="419" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E289356" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10040" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACT</genome_strand>
        <mrna_strand>TCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGCCATGGCATGGGAAAGGATAATAAGAGGATGAACGTGAAATGTATGGCCTCTAGTATTCCAGCATATGATATAGTGCCTGATATGGAGAAAACGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTATATTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGCGGTACCCCTGCCAAAGATGCTAACGGCAATGATGTTGTCGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407022" ref_strand="+" ref_description="SGN-E407022 [PPI-5-D4]">
      <seq>ctcagctatgctcaagcaaaagtggtgtttcatcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccatggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaaggtgggtgtttgttccatgggttgaaacagacttcagagctggtgattctncatggtggggcttagaaatcccatctaaactttattattattagnatatatattctcttggatcttttggtacatagaagcttattcccctttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9898" stop="12759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10041" g_stop="10045" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="256" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="374" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="557" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12462" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="752" r_length="195" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E407022" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10041" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGT-GGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGT-GGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTA-CCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGA</genome_strand>
        <mrna_strand>CTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTGTTTCATCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCATGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGTGGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAGCTGGTGATTCTNCATGGTGGGGCTTAGAAATCCCATCTAAACTTTATTATTATTAGNATAT-ATATTCTCTTGGATCTTTTGGTACATAGAAGCTTATTCCCCTTTTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229223" ref_strand="-" ref_description="SGN-E229223 [cLEL-29-C10](-)">
      <seq>tcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtatgtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctactaccttgttgtggagaacgatggaacactcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9898" stop="11557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10198" g_stop="10455" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="377" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11257" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="421" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E229223" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10198" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTA-GTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCG</genome_strand>
        <mrna_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTATGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTAC-TACCTTGTTGTGGAGAACGATGGAACACTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323896" ref_strand="+" ref_description="SGN-E323896 [cTOC-3-C17]">
      <seq>tcagctatgttcaagcaaaagtggtatttcatcgggttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9898" stop="11416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10198" g_stop="10455" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11116" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="351" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E323896" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10198" e_stop="10455"/>
          <exon e_start="11024" e_stop="11116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAAC</genome_strand>
        <mrna_strand>TCAGCTATGTTCAAGCAAAAGTGGTATTTCATCGGGTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344790" ref_strand="+" ref_description="SGN-E344790 [cTOF-21-H8]">
      <seq>cccatcttttcattataaattatgatttagtttcctgctgctcaaacaaaagtggaatttcatcggtttcacaaagccttgcttgagaaaccgatgaaaattaatggtcatggaatgggaaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttggaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgagtcaagccgcggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgtttatgatgggaaagtggtgtttgttccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9905" stop="12626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="291" r_length="256" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="409" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="592" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12326" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="649" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E344790" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCAC-AAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGG-AAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGG</genome_strand>
        <mrna_strand>TGCTGCTCAAACAAAAGTGGAATTTCATCGGTTTCACAAAGCCTTGCTTGAGAAACCGATGAAAATTAATGGTCATGGAATGGGAAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGGACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGAGTCAAGCCGCGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTTATGATGGGAAAGTGGTGTTTGTTCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378188" ref_strand="+" ref_description="SGN-E378188 [TUS-33-A5]">
      <seq>gctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9906" stop="12829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10206" g_stop="10455" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="368" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="551" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12529" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="812" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E378188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10206" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGT</genome_strand>
        <mrna_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373996" ref_strand="+" ref_description="SGN-E373996 [TUS-33-A5]">
      <seq>gctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9906" stop="12682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10206" g_stop="10455" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="368" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="551" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="664" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10206" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCT</genome_strand>
        <mrna_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290755" ref_strand="+" ref_description="SGN-E290755 [cLET-10-L13]">
      <seq>caaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9913" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10213" g_stop="10455" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="544" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E290755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10213" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</genome_strand>
        <mrna_strand>CAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365808" ref_strand="+" ref_description="SGN-E365808 [cLPT-8-C2]">
      <seq>caaaagtggtctttcatcggtttcacaagcgttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaagtggtagtggtggtacccttgccaaagatgctaatggcaatgatgttgctgtgactgaatggctcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9913" stop="11401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10213" g_stop="10455" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11101" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="317" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E365808" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10213" e_stop="10455"/>
          <exon e_start="11024" e_stop="11101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAAC</genome_strand>
        <mrna_strand>CAAAAGTGGTCTTTCATCGGTTTCACAAGCGTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGAT-A-A-GAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGA-AAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAAGTGGTAGTGGTGGTACCCTTGCCAAAGATGCTAATGGCAATGATGTTGCTGTGACTGAATGGCTCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289599" ref_strand="+" ref_description="SGN-E289599 [cLET-4-K17]">
      <seq>aaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtttcaatgctgtgtgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9914" stop="11584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="10455" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="360" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11284" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="432" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E289599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACT</genome_strand>
        <mrna_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTTTCAATGCTGTGTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294423" ref_strand="+" ref_description="SGN-E294423 [cLET-14-K2]">
      <seq>aaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaacattaatggtcatggaatgcgaaaggataataacacgatgaaagcgaaatgtatggcagctagtattccagcatatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggcggaatgcttgaaccttatgctactttctttgcacctcctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9914" stop="10757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="10455" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294423" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="10455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</genome_strand>
        <mrna_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAACATTAATGGTCATGGAATGCGAAAGGATAATAACACGATGAAAGCGAAATGTATGGCAGCTAGTATTCCAGCATATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGCGGAATGCTTGAACCTTATGCTACTTTCTTTGCACCTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408162" ref_strand="+" ref_description="SGN-E408162 [PPI-10-C20]">
      <seq>cgagggtttcaatcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccatggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaagggtggtgtttgttccatgggttgaaacagacttcagagctggtgattctccatggtgggcttagaaatcccatctaactttnattattattagnatatatattctcttggatcttttgttacatagaagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9924" stop="12741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10217" g_stop="10455" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="354" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="537" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12441" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="710" r_length="173" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E408162" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10217" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA-AGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTA-CCATTGTTACATAGAAGCTTAT</genome_strand>
        <mrna_strand>CGAGGGTTTCAATCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCATGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAGCTGGTGATTCTCCATGGTGGGCTTAGAAATCCCATCTAACTTTNATTATTATTAGNATAT-ATATTCTCTTGGATCTTTTGTTACATAGAAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400547" ref_strand="+" ref_description="SGN-E400547 [PPC-1-K2]">
      <seq>tcggtttcacaagcgttgctcgtgaaaccgatgaagattaatggtcatggaatgggaaaggataagaggatgaaagtgaaatgtatggcagctagcattccagcagatgatagagtgcctgatatggaaaaaaggaatctcatgaatttgcttttattgggtgcacttgcactaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggatcaggaggtggtagtagcggtaccattgccaaagatgctaatggcaatgatgttgttgtaactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccatggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9929" stop="12606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10229" g_stop="10455" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="342" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="525" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="562" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E400547" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10229" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</genome_strand>
        <mrna_strand>TCGGTTTCACAAGCGTTGCTCGTGAAACCGATGAAGATTAATGGTCATGGAATGGGAAAGG---ATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCAGATGATAGAGTGCCTGATATGGAAAAAAGGAATCTCATGAATTTGCTTTTATTGGGTGCACTTGCACTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGTGGTAGTAGCGGTACCATTGCCAAAGATGCTAATGGCAATGATGTTGTTGTAACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCATGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319154" ref_strand="+" ref_description="SGN-E319154 [cTOB-16-C24]">
      <seq>tcggtttcacaagccttgcttgtgaagccgacgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggacaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgcaccttatgctactttctttgcacctactggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgcggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9929" stop="11594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10229" g_stop="10455" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="345" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11294" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="427" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E319154" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10229" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTT</genome_strand>
        <mrna_strand>TCGGTTTCACAAGCCTTGCTTGTGAAGCCGACGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGACAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGCACCTTATGCTACTTTCTTTGCACCTACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGCGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373995" ref_strand="+" ref_description="SGN-E373995 [TUS-33-A5](-)">
      <seq>ttaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9966" stop="12831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10266" g_stop="10455" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="308" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="491" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12530" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="753" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373995" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10266" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTA</genome_strand>
        <mrna_strand>TTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539027" ref_strand="+" ref_description="SGN-E539027 [TUS-58-J6](-)">
      <seq>attgaaaagtataatacgaggatgaaagtgaaatgtatgccagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacacctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9980" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10280" g_stop="10455" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="294" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="477" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12569" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="778" r_length="301" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E539027" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10280" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGG</genome_strand>
        <mrna_strand>ATTGAAAAGTATAATACGAGGATGAAAGTGAAATGTATGCCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACACCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342655" ref_strand="+" ref_description="SGN-E342655 [cTOF-7-J5]">
      <seq>ggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagaagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="9983" stop="12716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10283" g_stop="10455" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="292" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="475" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="622" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10283" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAG-AGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</genome_strand>
        <mrna_strand>GGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281067" ref_strand="+" ref_description="SGN-E281067 [cLER-7-C17]">
      <seq>cagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10035" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="10455" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="239" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="422" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12307" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="460" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</genome_strand>
        <mrna_strand>CAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298338" ref_strand="+" ref_description="SGN-E298338 [cLET-41-M12]">
      <seq>aaagggaatcttatgaattggcttttatggggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10062" stop="12606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10361" g_stop="10455" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="213" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="396" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="433" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E298338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10361" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</genome_strand>
        <mrna_strand>AAAGGGAATCTTATGAATTGGCTTTTATGGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373242" ref_strand="+" ref_description="SGN-E373242 [TUS-31-F13](-)">
      <seq>gaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10075" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10375" g_stop="10455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="199" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="382" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="632" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10375" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733676" ref_strand="+" ref_description="SGN-E733676 [LB10CF03]">
      <seq>atttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10077" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10377" g_stop="10455" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="197" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="380" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12570" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="682" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E733676" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10377" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGT</genome_strand>
        <mrna_strand>ATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290874" ref_strand="+" ref_description="SGN-E290874 [cLET-10-H5]">
      <seq>tgcacttgctttaccaactggtgtaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggcacccctgccaaagatgctaatggcaatgatgttgttgagactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10093" stop="12802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10393" g_stop="10455" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="181" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="364" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12502" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="598" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E290874" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10393" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</genome_strand>
        <mrna_strand>TGCACTTGCTTTACCAACTGGTGTAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGCACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGAGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728284" ref_strand="+" ref_description="SGN-E728284 [LA17BC05]">
      <seq>gctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttaatttataacagtggtgtctgaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10100" stop="12880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10400" g_stop="10455" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="174" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="357" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12580" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="669" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E728284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10400" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCA</genome_strand>
        <mrna_strand>GCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTAATTTATAACAGTGGTGTCTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239225" ref_strand="+" ref_description="SGN-E239225 [cLEL-9-G14](-)">
      <seq>ggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattccccaaattattataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10731" stop="12746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11031" g_stop="11141" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="294" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12460" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="485" r_length="191" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E239225" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11031" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAG</genome_strand>
        <mrna_strand>GGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCAAATTATTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291006" ref_strand="+" ref_description="SGN-E291006 [cLET-8-F10]">
      <seq>tggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10739" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11039" g_stop="11141" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="286" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12412" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="429" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11039" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTC</genome_strand>
        <mrna_strand>TGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253134" ref_strand="-" ref_description="SGN-E253134 [cLEG-25-P6]">
      <seq>gtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggataaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10741" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11041" g_stop="11141" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="285" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="535" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="556"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E253134" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253134" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11041" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTC-AAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286738" ref_strand="-" ref_description="SGN-E286738 [cLES-14-N5]">
      <seq>tgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10760" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11060" g_stop="11141" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="265" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="515" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="539"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286738" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286738" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11060" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAA-AATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732812" ref_strand="+" ref_description="SGN-E732812 [LB03AH04]">
      <seq>ccattgaaagtgatgttgttgtgactgaatggctcaaaactcactgtacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10765" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11062" g_stop="11141" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="264" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12600" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="596" r_length="332" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E732812" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11062" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCA-TGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTA</genome_strand>
        <mrna_strand>CCATTGAAAGTGATGTTGTTGTGACTGAATGGCTCAAAACTCACTGTACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279913" ref_strand="-" ref_description="SGN-E279913 [cLER-8-E12]">
      <seq>tgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaagggaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttggaaaacagttctttttgtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10772" stop="12831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11072" g_stop="11141" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="253" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12535" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="520" r_length="267" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E279913" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279913" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11072" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAA-GGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGT</genome_strand>
        <mrna_strand>TGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGAAAACAGTTCTTTTTGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281613" ref_strand="+" ref_description="SGN-E281613 [cLER-14-E17]">
      <seq>ttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10777" stop="12806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11077" g_stop="11141" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="248" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="486" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281613" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11077" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTC</genome_strand>
        <mrna_strand>TTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611030" ref_strand="+" ref_description="SGN-E611030 [60776]">
      <seq>ttgtaactgaatggctcaaaactcattcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaatgatggaacactcgcgacctatggtatcaatgccgtgtgcactcaccttggttgtgttgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10780" stop="12611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11080" g_stop="11141" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="245" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12311" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="287" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E611030" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11080" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTG</genome_strand>
        <mrna_strand>TTGTAACTGAATGGCTCAAAACTCATTCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAATGATGGAACACTCGCGACCTATGGTATCAATGCCGTGTGCACTCACCTTGGTTGTGTTGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291639" ref_strand="+" ref_description="SGN-E291639 [cLET-6-P10]">
      <seq>tcagaactcatgcacctggaactagaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10795" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11095" g_stop="11141" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="230" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="480" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="492"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291639" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11095" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TCAGAACTCATGCACCTGGAACTAGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294995" ref_strand="+" ref_description="SGN-E294995 [cLET-17-J22]">
      <seq>caaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10796" stop="12802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11096" g_stop="11141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="229" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12502" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="463" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11096" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</genome_strand>
        <mrna_strand>CAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284263" ref_strand="+" ref_description="SGN-E284263 [cLER-16-F23]">
      <seq>ctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10810" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11110" g_stop="11141" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="215" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="512" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E284263" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11110" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>CTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409037" ref_strand="+" ref_description="SGN-E409037 [PPI-12-N16]">
      <seq>ctcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaacgccgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacattgatgatgggaagggtggtgtttgttccatgggttgaaacagacttcagaactggtgattctccatggtgggcttagaaatcccatctaactttaattattattagtatatatattctcttgtatctttgttacatagaagcttattcccctttttataaagaaaaaaaatgtaactattgaaacattaccattgcagtcccaaaataacatttctcatttgggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10816" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11116" g_stop="11141" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="209" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12490" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="426" r_length="217" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="476"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E409037" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11116" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA-AGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACC</genome_strand>
        <mrna_strand>CTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAACGCCGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACATTGATGATGGGAAGGGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATTCTCCATGGTGGGCTTAGAAATCCCATCTAACTTTAATTATTATTAGTATAT-ATATTCTCTTGTATCTTTGTTACATAGAAGCTTATTCCCC--TTT-TTATAAA-GAAAAAAAATGTAACTATTGAAACATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281651" ref_strand="+" ref_description="SGN-E281651 [cLER-14-F1]">
      <seq>aaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10906" stop="12852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11131" g_stop="11141" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="194" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12552" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="478" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11131" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTT</genome_strand>
        <mrna_strand>AAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734403" ref_strand="+" ref_description="SGN-E734403 [LB12CC12]">
      <seq>gactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10906" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11134" g_stop="11141" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="191" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="441" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="455"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734403" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11134" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292438" ref_strand="+" ref_description="SGN-E292438 [cLET-1-H14]">
      <seq>taaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgccnnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10911" stop="12890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11137" g_stop="11141" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="188" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12601" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="521" r_length="333" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E292438" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11137" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAA</genome_strand>
        <mrna_strand>TAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCCNNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373283" ref_strand="+" ref_description="SGN-E373283 [TUS-31-N1]">
      <seq>taaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttgtattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcgtaaaaatctcccaagtatgggtaatcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10911" stop="12898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11137" g_stop="11141" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="188" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12590" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="510" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373283" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11137" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</genome_strand>
        <mrna_strand>TAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTGTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734499" ref_strand="+" ref_description="SGN-E734499 [LB12DC12]">
      <seq>gttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcatattagttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10931" stop="12901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11231" g_stop="11395" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12600" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="497" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="508"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E734499" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11231" e_stop="11395"/>
          <exon e_start="12270" e_stop="12600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTA</genome_strand>
        <mrna_strand>GTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239148" ref_strand="+" ref_description="SGN-E239148 [cLEL-9-G14](-)">
      <seq>gtggagaacgatggaacactccgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10934" stop="12759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11234" g_stop="11395" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12460" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="354" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E239148" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11234" e_stop="11395"/>
          <exon e_start="12270" e_stop="12460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGAACGATGGAACACT-CGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAG</genome_strand>
        <mrna_strand>GTGGAGAACGATGGAACACTCCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733133" ref_strand="+" ref_description="SGN-E733133 [LB04AC05]">
      <seq>cgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10942" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11242" g_stop="11395" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12590" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="476" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E733133" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11242" e_stop="11395"/>
          <exon e_start="12270" e_stop="12590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</genome_strand>
        <mrna_strand>CGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728509" ref_strand="+" ref_description="SGN-E728509 [LA18AC05]">
      <seq>accgttaaggggcgacctatggaatcaatgctgagtgcactcaccttgtattgtgtcgtgccgtggaatactgctgacaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggcgtttgttccatgggttgaaacagacttcacaactggtgatgctccatggtgggcttacaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaactttacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcaaaaaaaaaaaaaaaaacaaaaaaccccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10993" stop="12893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11244" g_stop="11395" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12590" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="475" r_length="322" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="499"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E728509" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11244" e_stop="11395"/>
          <exon e_start="12270" e_stop="12590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTG-GTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</genome_strand>
        <mrna_strand>ACCGTTAAGGGGCGACCTATGGAATCAATGCTGAGTGCACTCACCTTGTATTGTGTCGTGCCGTGGAATACTGCTGACAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGCGTTTGTTCCATGGGTTGAAACAGACTTCACAACTGGTGATGCTCCATGGTGGGCTTACAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACTTTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217009" ref_strand="+" ref_description="SGN-E217009 [cLEL-1-E21](-)">
      <seq>tggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaaaaaaaaaacccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10963" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11263" g_stop="11395" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="430" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217009" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11263" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>TGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218196" ref_strand="+" ref_description="SGN-E218196 [cLEL-23-C17](-)">
      <seq>ggtatcaatgctgtgtgcactcaacttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10964" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11264" g_stop="11395" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="429" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="443" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218196" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11264" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>GGTATCAATGCTGTGTGCACTCAACTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297201" ref_strand="+" ref_description="SGN-E297201 [cLET-29-F4]">
      <seq>gctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagntctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10973" stop="43410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11273" g_stop="11395" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="420" r_length="297" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="12827" i_length="262">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12828" g_stop="12836" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="429" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297201" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11273" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="12828" e_stop="12836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAA</genome_strand>
        <mrna_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGNTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA......................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296587" ref_strand="+" ref_description="SGN-E296587 [cLET-39-I17]">
      <seq>gctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="10973" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11273" g_stop="11395" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="420" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E296587" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11273" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218261" ref_strand="+" ref_description="SGN-E218261 [cLEL-23-B17](-)">
      <seq>caagttcatttgcccttgccatggatctcaatgcaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcacacgttaatgatgggaaagtggtgtttgttacatgggttgaaacagacttcacaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatgcagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="11023" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11323" g_stop="11395" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="370" r_length="297" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="384" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218261" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11323" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>CAAGTTCATTTGCCCTTGCCATGGATCTCAATGCAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCACACGTTAATGATGGGAAAGTGGTGTTTGTTACATGGGTTGAAACAGACTTCACAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATGCAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217840" ref_strand="+" ref_description="SGN-E217840 [cLEL-23-C17](-)">
      <seq>gttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcaaacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacataaaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="11026" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11326" g_stop="11395" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="367" r_length="297" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="381" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217840" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11326" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>GTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAAACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAAAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695879" ref_strand="+" ref_description="SGN-E695879 [LH_Ea07K21](-)">
      <seq>ctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaatcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattccccaaaataacatttctcatttgggatacagttcttatggtaattgtttattatcatttcattgttattttataacaggggtatctgaatcagtttacacgcatattagctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="11049" stop="12901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11349" g_stop="11395" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12596" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="375" r_length="328" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="392"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E695879" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11349" e_stop="11395"/>
          <exon e_start="12270" e_stop="12596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTA</genome_strand>
        <mrna_strand>CTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAATCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTCCCCAAAATAACATTTCTCATTTGGGATACAGTTCTTATGGTAATTGTTTATTATCATTTCATTGTTATTTTATAACAGGGGTATCTGAATCAGTTTACACGCATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692039" ref_strand="+" ref_description="SGN-E692039 [LH_Ea07K21]">
      <seq>ttcaatacaacaatcaaggaaaagttgttagaggacctgctcctttgtccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaatcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattccccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcattgttattttataacggcggtatctgaatcagtttacacgcatattagctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="11050" stop="12901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11349" g_stop="11395" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12596" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="375" r_length="328" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="388"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E692039" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11349" e_stop="11395"/>
          <exon e_start="12270" e_stop="12596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTA</genome_strand>
        <mrna_strand>TTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAATCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTCCCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTGTTATTTTATAACGGCGGTATCTGAATCAGTTTACACGCATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217761" ref_strand="+" ref_description="SGN-E217761 [cLEL-23-B17](-)">
      <seq>atcaaggaaaagttgttagaggacatgctcctttatccttggcattggctcatgcacacgttgatgatgggaaagtggtgtttgttccatgggttaaaacagacttcacaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtagctattgaaacattacccaaaataacatttctcatttgggatgcagttctttttgtaattgtttattatcatttcagttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="11061" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="11395" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="332" r_length="297" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13188" i_length="623">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13189" g_stop="13202" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="346" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217761" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13189" e_stop="13202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAA</genome_strand>
        <mrna_strand>ATCAAGGAAAAGTTGTTAGAGGACATGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCACACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTAAAACAGACTTCACAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAGCTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATGCAGTTCTTTTTGTAATTGTTTATTATCATTTCAGTTTTATTTTATAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215938" ref_strand="+" ref_description="SGN-E215938 [cLEL-13-B5](-)">
      <seq>tggtgtttgttccatgggtttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatcnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="12010" stop="12815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12310" g_stop="12518" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="212" polyA_stop="228"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E215938" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12310" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTTGTTCCATGGG-TTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TGGTGTTTGTTCCATGGGTTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369458" ref_strand="+" ref_description="SGN-E369458 [TUS-23-A21](-)">
      <seq>aaagttccccttggaaaacaatttaacacctttgagaatagtttttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgactgtagtattaacaagaatcaggaggttcatgagcagggaaaaagcaacaactggctcgaggaatattcgttttacacaagcatggtaattggattcaatacaggtttcttgttgttttgggttactttactgttgaaaaagtcatggagatatgcatatatgaggtgcctggaaaacatgggcaataagatttatgtctttgctgccatcagatggagaaaatttcaagcagcaaagacagtgaccaattgtccaaattgagctgctgattctctttacttttctatcttttcttttataatatcgtgttttttacttcctacttgttgttttaaatataatgtttgtttttatcggcacttatattttattgtaatgttttttgttatgaagtaacgaaattgatttggtgtaattgccccattacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="15405" stop="14249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15106" g_stop="14552" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E369458" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15106" e_stop="14552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCACAATTACTTGAA</genome_strand>
        <mrna_strand>AAAGTTCCCCTTGGAAAACAATTTAACACCTTTGAGAATAGTTTTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAAAAAGCAACAACTGGCTCGAGGAATATTCGTTTTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTTTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTTTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCCCCATTACTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369459" ref_strand="+" ref_description="SGN-E369459 [TUS-23-A21]">
      <seq>ttcatcaaaaattttgtctaacaaatttcactaaaacttatggaaagtgtagctattctttcccttctccttgttgttgttattccatatggattttcttgtgtccaaacttgtgaaattcactgcattgaaggtgaaaaaaatgctcttataaagttcatccagggcttcaagaattcgtcacagaacatgttgtggcttgacgaaaattgctgtcaatggaaaggtgttaaatgcgataacaaaacagggcatgtgatcactcttgatctgcaaaatcaattcttacaaggagaagttccacttggaaaacaatttaacacctttgagaatagttcttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgactgtagtattaacaagaatcaggaggttcatgagcagggagaaagcaacaactggctcgaggaatattcgttctacacaagcatggtaattggattcaatacaggtttcttgttgttttgggttactctactgttgaaaaagtcatggagatatgcatatatgaggtgcctggaaaacatgggcaataagatttatgtctttgctgccatcagatggagaaaatttcaagcagcaaagacagtgaccaattgtccaaattgagctgctgattctctttacttttctatcttttcttttataatatcgtgttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="22812" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22512" g_stop="22221" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15108" g_stop="14669" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="732" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E369459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22512" e_stop="22221"/>
          <exon e_start="15108" e_stop="14669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAGGTGAGTTTGGGATTTCTCTACTTGACTTGCCACATTTGGTACACTTAGACATGAGCCAAATTGATTTCCAGGGAGCACATATTCCTGATTTCATCTCCAGTTTTAAAAACCTGGAATATCTCAATTTGTCTAAAACGAATTTTAGGGGAGAAATTCCTGAGAATCTTGGCAATCTGTCGCGATTACAGTTTCTTGATCTGAGCGGTTATTATTCACTCAGTGTGAGTAGCCTTAAGTGGATTCAGCCCCTCTTTTCTATGAAGACTCTTGATTTGAGTGGTGTTAACATGAGAAGCGCGGAAAACTGGCTACATGACATCAATATGTTAAGTTCGCTCTCTGAATTACGTTTGTCTGCTTGTCAGCTTACTACATTCCCTGAATTGCTTCCGATTAATGTGAGTTTCACATCTCTTCGGGTTCTTGATCTTTCATTGAACTATTTTGATACTAGTATTCCTAGCTGGTTGTTCCATACATGCCAAGATCTTGTTTATCTTAATCTTTCGAGAAGTCAGCTGGATGGTTTGATTCCAAATGATTTTGGAAATATGAGTTCACTCAGAGTTCTTGATCTTTCCAAGAACTCTCTCCGAGGCAATCTTTCACATTCCTGTGAGAAAATGAGTTCACTGTCCTTTCTTGATCTCTCAAGAAACTCGTTCACGGGTTATTTACCACCAACCCTGCCATCAAAGCTGAAATACTTGGATATTTCTGATAATGAAATGTGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATACTCCCCCTCAAGCTGGAATCTCTATAGACATTAAAGACTCCAAGCTTGTTGATCAGTTCAAGATGTTGAGAAACTCCCAGCCCTTTGGTTAGAAGATCTGCTAATTGCTCCTTTGTGTTGATATATTCTGTGTGTATCATACCACTTTTGATTTTTTCCCTCACAAAATGACAATCAATCTCAATGTGTTTGGTTCTTTCATGAAAAATAGGATTAGCTCCAATTTGAATTGCAGCCTTACTATCACAGTGCAATTTTACAGGAACTATCACATTCACATTAAGTTCTTTCAATACTCCAAGTAACCAAGATATTTCTGATACTGCAGCTGCCATGCTTCTATACTCAGCTTCTGCTGAACTTCTGCTGACTGTATGTTGCTTCTTGGATTTCCAAGAAATGAGTGAATTCCCTAGCTTGATTACATACCCTGTCACTGACCTTCTTGTGTTTGGACATGATGCCCAGTCTGAGTCACAGAATGCCTCCATTTCATTGCTGTCTTCACTGCTAAGTAGTATCCCTTGTCCTGGACATCCTTTAATATATCTAACCAATCTCAATGCAGCTTCCCAGTGAGACACCTTAGGTTTCTGCATGAACTGTGATAAAACTTGTACAGCAAAACATATATCAGGCCTAGTAGTTGTTAAGTATAACAATCTACCAATTAATCTCTGATATGCAGTAACATTTGCATATAAAGGATCATCTGTCTTTGCAGTGGCTTCATCATATTCAACAGTAGTTAATTTGACACCTGATTCTAAAGGTGTGCTTGCTGGTTTTGACCCTCCAAGACCACAGTCAGAAATCAACTCTAGTGCATACTTTCTTTGGCTAAGAATAATACCATTTCTTGATCTTAGTACTTCAATACCAAGAAAATACTTTAGATCACCAAGATCTTTCATTTTGAAGTTACTATGTAATGTAGTCTTTAGATCCTCAATTAGAACACTGCTATTTCCAGTTATAAGAAGATCATCTACATAGATCAACACTGCTGCAATATCATCACCAACTATCTTTGTGAAAAGAGAATGATCATAAGAACTTTGAGAATAACCAGCAGTAACTAGAGCCTCAGTTAGCTTAAGGTTCCATTGCCTGGAAGTTTGTTTCAAGCCATATAAAGATTTCAACAATTTACACACTTTGTTCTCCCCCTGCCTCTGAAATCCTTGAGGAAAGTCCATGTATACTTCTTCATTGAGATCACCTTGAAGGAAAGCATTATGAACATCCATTTGAAAAAGAGGCCAACCATGGGATGCTGCAACACTAATCACAGTTCTCACTGTGACCATCTTAGCTACTGGAGAAAATGTTTCATGATAGTCCAACCCTTCTTGTTGATTATAGCCTTTGGCAACTAACCTTGCCTTGTACCTTTCCACCTCACCATTAGCTTTAAGTTTAACTTTATAAACCCATTTTGAACCAATAGGATGTTTACCAGATGGCAAATCTACTATTGCCCAGGTATTGTTTTGTTCTAAAGCAGCTACTTCAGACTGCATTGCATCCACCCATTGTTGGTGTTTGGAGGCTTCCTTAAAGCTGGTGGGTTCCACTATAACTGAGAACCCCTTGATAAAGTTTTGATAAGATGGTGTCAAGAGTTCATATGACAAATTATTAGCAATAGGATATGAACAAGTCATATTAGACTTAGTTGAAATTATGTAATCTTTATGCCAAAGAGGAGGCCTAGTATTTCTAGCAGTTCTTCTAGCAGGTGTAAGATCACCATCATCTGTGATTTCACTATGTTGTGGCTCCAGCAGATTATTCTCTAAAGAAGCATCAACTTCTGATTGTATAGGATTGATCTCCTCAACATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAAATCTGATAGGAATTTCACTGTGAAATCTCAGTGCTCTGGCTACATTTAATATGTGTCTATGCTTTCTTTCAACAACACTATTTTGTTGAGGTGTATAAGCACATGAACTCTGATGAACTATTCCAAGAGAAGAAAACAAAACACTGCATTTAGAGTTAAAAAACTCAGTTCCATTATCAGTTCTCACAACTTGAACTTTAACACCAAATTGTGTATTAACCATCAACATAAAGTCTTTCAATATAATGTGCACATCTGATTTGTGTTGAACTAGACAAAGCCAAGTAAATCTACTGAAATCATCAACAATTGTCACAAAATACTGCTTATTATCATGTGTAAGAACTTTGTAAGGTCCCCAGAGATCAACATGAAGAAGTTGAAAATTATGAGTTGACTTAGAATTACTTGTAGGAAAACTCAATCTACTTTGTTTGGCCACTGGACATATTTGACAGCAATTGTATGTGGAGATGTTGAAGTACTTCTTAAGAGAAATTATCTGTTCCATAACTTTGATAGGTGGATGTCCAAGTCTGAAATGCCACAAGTCAGCCAAACTTGCACCCTTTTTTGATGTTGAAGCTGAATTAACTCTTGCTCTAACAGTACTTTGTAGTAGGTATAAACCATCAATCTCTTTACCAATCCCAATCACCTTGCCATTGTAAAGTTCCTGCAGTACACAAAAGTGAGGAAAGAAACTCACACTACAAGATAATTCCTTGGTGAGTTTTGCCACAGATAGTAAATTGAACTTAAAATCAGGTACATGAAGTACATTCTTCACTGTCTGATTTCCAAAAATGACTGAATTGCCTGTATGTTTCACTTGAGCTCTGCTTCCTGTTGGCAACTGAACTGTACTCGAGTATTCATTCTTTGTGTTTTTCAATTCATACATGAGCTCCTCATATGAAGCAACATGATGAGTAGCTCCTGAATCAATTATCCAGTCATATGCAGATGATTTAGTCTGTAAAGAAACATTACCTGTCAAGTTAGCCTTGCAGTCACTTGGTTCTTTGTTGTGTAACAGATTCTTCATTTGATTGTATTCTTTCTTTGTGAATTCAGATTCCTCCCTCTGTTTATCTATTGAAGCATTGTTAGCATATGGCTTAAAGTTTCCAGAATTTCCAGTGTTGTTGTAAGTATTACTACTGTAAGAACCATGTGATCTAAAACCTTCATTGTTGTTCTGGTATGATCCAGTAGAATCTGATTGTTTCCTCTTACTCTTGAAGTCAGAAGGATATCCTACCAGCCTATAGCACTTTTCAGTTACATGATTTTTGAAACCACAGATCTCACATCCAGTATTGTTATTGCCTGGCAATACTTTCTTCCCTTTGAATCCTTGTCCTTGTCCTTTTCCTGCCATCATAGTAAGTGGTTCTTTATTTGAATCCACAACACCTAATACTCTTTGGCTTTCCTCTTGAATTACAGTTGCATAAGCTTGGTTAATTGTAGGTACCTCACTTTTCAGCAACAAATCACTTCTCACATGACTGAAAGTCTCATTTAACCCCATCAAGAACATCATCAATCTTTGTTGATGTAAATGCTCAATGTAAGGCTTAGCATCATCACATTTACATGATGGTGAAGGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAATAATACTCTGTTACAGAATCCGTACCTTGCTTTAATGTGGCTACTTCTGTCCAAAGTTGATAGATCCTAGTAAGATTAGATTTATCAAACCTCTCCTTGAAATCTTCCCAAACTCGTTTTGCATTTGATGCATATACTATTGTTGTTAACAAATTGTTTGCTACTGTGCTGCTAATCCATGAAAGAACCACTGCATTGCACCTTTCCCATTGAACTGCTAATTCATCCTTGTACATACTCTTTAAACAGGTTCCATCTATGAAGCCTATCTTGTTCTTCACCAACAGTGCCAATCTCATCGATCTGCTCCAAAGACCATAATTCTCAGGTCCTGTAAGCTTTGTTGTGATCAATGCAACACCAGGCGTGTCTGAAGGCTGCAGATAGAGTGGATGATTGTGTCCAAGAGTTGCTACAGTAAGTTCTGCCATGGCTATAATCTGATCTTCAAAAATTACTTCGCGGAAAGAAAAAATTCGAAATCAAATTAGTCCTAATTACGCCCGCTCTGATACCATGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATAAAATGGAAGGTCCTTTAGGAAGAAGCATCACACAACTTAAGCAATTAGTTGTCCTCAATGTTGCTCGAAACTCTTTCAATGACTCGATTACAGAACATTTCTTGAATTTAACTGATTTGAGAGTGTTAGACTTGTCATCCAACTCGTTTATCTTCAACGTAAGTGCAACTTGGATGCCTCGTTTCCAACTTGAGTTTATAAGCCTGCAGTCTTGCGGACTTGGTGCACGATTTCCTCAGTGGCTTCAGACACAGAAAGAGTTGTCATTTATTGATATCTCTCGCGTTAACATCTCAGGACATGTGCCTGATTGGTTCTGGAATTTTTCTGCTAAGGTTAATCACATAGACCTTTCGCAGAACTATATCGGAGGACAAGTCCCTGATTTTACAGAGAGAGTTCATCTTACAAAATTGGACCTGAGTGACAACAATTTTCATGGTCCTTTGCCTCATTTTTCACCCAATATGATGACACTGATTTTGGCAAGTAACTCCTTTAACGGTACTATCGCCCCTGTATGTGAATCGCTTGTCATGAATAACTCTCTCAGTCTTCTAGACCTATCCTCAAATTCTCTATCAGGACAACTTTTAGACTGTTGGAGATATGGGAAGAATCTGCAAGGATTGAATTTAGGCCATAATGATCTATCAGGGGAGATACCTCGTTCCATCGGAGATCTTGCCAATCTCTTCTTTCTGCAATTGCAAAACAACAAGTTCTCCAAAAATATGCCTTCATCATTGAAGAACATAAGTGCACTAAAAATTCTTGATGTTTCTGAAAATAGTTTATCTGGAAAGATACCAAATTGGTTAGGAGAGAGTTTAAATACTCTAGAGATTCTTAAATTAAGCGGAAACATGTTTGACGGAACCATTCCTAGGGAGATTTGCCAGCTTAAATACTTGTATACTTTGGACCTTAGTTCCAATGCACTATCAGGAGTCATTCCAAGGTGTGTTGATAATCTCCGCACCATGTCCGGAGAAGAGGAGGCTCCTTCCTTTACTCATGGACCCTATGCAGATTACAGGGTTCAAGGAAGGATCGTTTTAAAGGGATACAGTTACGACATCTTTTTTCACTGGTCCTACGTAGTAATTGATCTATCAGACAATCATTTATCAGGGGAAATTCCCGAGGAAATCGCCAGCCTTACTGCACTGAGGAGCTTGAATTTATCATGGAATCATTTCACAGGAGCAATTCCACGTTACATTCACAAAATGCAGATTTTGGAATTTCTTGATCTTTCCAGGAATAAGCTGTCATGTACATTTCCTCCCGATATCATACAACTTCCACTTCTTGTGTTTGTGAATGTTTCTTTCAATGATTTGACAGGAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTA</genome_strand>
        <mrna_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240790" ref_strand="+" ref_description="SGN-E240790 [cLED-24-O2]">
      <seq>ttcatcaaaaattttgtctaacaaatttcactaaaacttatggaaagtgtagctattctttcccttctccttgttgttgttattccatatggattttcttgtgtccaaacttgtgaaattcactgcattgaaggtgaaaaaaatgctcttataaagttcatccagggcttcaagaattcgtcacagaacatgttgtggcttgacgaaaattgctgtcaatggaaaggtgttaaatgcgataacaaaacagggcatgtgatcactcttgatctgcaaaatcaattcttacaaggagaagttccacttggaaaacaatttaacacctttgagaatagttcttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="22812" stop="14684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22512" g_stop="22221" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15108" g_stop="14984" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="417" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E240790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22512" e_stop="22221"/>
          <exon e_start="15108" e_stop="14984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAGGTGAGTTTGGGATTTCTCTACTTGACTTGCCACATTTGGTACACTTAGACATGAGCCAAATTGATTTCCAGGGAGCACATATTCCTGATTTCATCTCCAGTTTTAAAAACCTGGAATATCTCAATTTGTCTAAAACGAATTTTAGGGGAGAAATTCCTGAGAATCTTGGCAATCTGTCGCGATTACAGTTTCTTGATCTGAGCGGTTATTATTCACTCAGTGTGAGTAGCCTTAAGTGGATTCAGCCCCTCTTTTCTATGAAGACTCTTGATTTGAGTGGTGTTAACATGAGAAGCGCGGAAAACTGGCTACATGACATCAATATGTTAAGTTCGCTCTCTGAATTACGTTTGTCTGCTTGTCAGCTTACTACATTCCCTGAATTGCTTCCGATTAATGTGAGTTTCACATCTCTTCGGGTTCTTGATCTTTCATTGAACTATTTTGATACTAGTATTCCTAGCTGGTTGTTCCATACATGCCAAGATCTTGTTTATCTTAATCTTTCGAGAAGTCAGCTGGATGGTTTGATTCCAAATGATTTTGGAAATATGAGTTCACTCAGAGTTCTTGATCTTTCCAAGAACTCTCTCCGAGGCAATCTTTCACATTCCTGTGAGAAAATGAGTTCACTGTCCTTTCTTGATCTCTCAAGAAACTCGTTCACGGGTTATTTACCACCAACCCTGCCATCAAAGCTGAAATACTTGGATATTTCTGATAATGAAATGTGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATACTCCCCCTCAAGCTGGAATCTCTATAGACATTAAAGACTCCAAGCTTGTTGATCAGTTCAAGATGTTGAGAAACTCCCAGCCCTTTGGTTAGAAGATCTGCTAATTGCTCCTTTGTGTTGATATATTCTGTGTGTATCATACCACTTTTGATTTTTTCCCTCACAAAATGACAATCAATCTCAATGTGTTTGGTTCTTTCATGAAAAATAGGATTAGCTCCAATTTGAATTGCAGCCTTACTATCACAGTGCAATTTTACAGGAACTATCACATTCACATTAAGTTCTTTCAATACTCCAAGTAACCAAGATATTTCTGATACTGCAGCTGCCATGCTTCTATACTCAGCTTCTGCTGAACTTCTGCTGACTGTATGTTGCTTCTTGGATTTCCAAGAAATGAGTGAATTCCCTAGCTTGATTACATACCCTGTCACTGACCTTCTTGTGTTTGGACATGATGCCCAGTCTGAGTCACAGAATGCCTCCATTTCATTGCTGTCTTCACTGCTAAGTAGTATCCCTTGTCCTGGACATCCTTTAATATATCTAACCAATCTCAATGCAGCTTCCCAGTGAGACACCTTAGGTTTCTGCATGAACTGTGATAAAACTTGTACAGCAAAACATATATCAGGCCTAGTAGTTGTTAAGTATAACAATCTACCAATTAATCTCTGATATGCAGTAACATTTGCATATAAAGGATCATCTGTCTTTGCAGTGGCTTCATCATATTCAACAGTAGTTAATTTGACACCTGATTCTAAAGGTGTGCTTGCTGGTTTTGACCCTCCAAGACCACAGTCAGAAATCAACTCTAGTGCATACTTTCTTTGGCTAAGAATAATACCATTTCTTGATCTTAGTACTTCAATACCAAGAAAATACTTTAGATCACCAAGATCTTTCATTTTGAAGTTACTATGTAATGTAGTCTTTAGATCCTCAATTAGAACACTGCTATTTCCAGTTATAAGAAGATCATCTACATAGATCAACACTGCTGCAATATCATCACCAACTATCTTTGTGAAAAGAGAATGATCATAAGAACTTTGAGAATAACCAGCAGTAACTAGAGCCTCAGTTAGCTTAAGGTTCCATTGCCTGGAAGTTTGTTTCAAGCCATATAAAGATTTCAACAATTTACACACTTTGTTCTCCCCCTGCCTCTGAAATCCTTGAGGAAAGTCCATGTATACTTCTTCATTGAGATCACCTTGAAGGAAAGCATTATGAACATCCATTTGAAAAAGAGGCCAACCATGGGATGCTGCAACACTAATCACAGTTCTCACTGTGACCATCTTAGCTACTGGAGAAAATGTTTCATGATAGTCCAACCCTTCTTGTTGATTATAGCCTTTGGCAACTAACCTTGCCTTGTACCTTTCCACCTCACCATTAGCTTTAAGTTTAACTTTATAAACCCATTTTGAACCAATAGGATGTTTACCAGATGGCAAATCTACTATTGCCCAGGTATTGTTTTGTTCTAAAGCAGCTACTTCAGACTGCATTGCATCCACCCATTGTTGGTGTTTGGAGGCTTCCTTAAAGCTGGTGGGTTCCACTATAACTGAGAACCCCTTGATAAAGTTTTGATAAGATGGTGTCAAGAGTTCATATGACAAATTATTAGCAATAGGATATGAACAAGTCATATTAGACTTAGTTGAAATTATGTAATCTTTATGCCAAAGAGGAGGCCTAGTATTTCTAGCAGTTCTTCTAGCAGGTGTAAGATCACCATCATCTGTGATTTCACTATGTTGTGGCTCCAGCAGATTATTCTCTAAAGAAGCATCAACTTCTGATTGTATAGGATTGATCTCCTCAACATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAAATCTGATAGGAATTTCACTGTGAAATCTCAGTGCTCTGGCTACATTTAATATGTGTCTATGCTTTCTTTCAACAACACTATTTTGTTGAGGTGTATAAGCACATGAACTCTGATGAACTATTCCAAGAGAAGAAAACAAAACACTGCATTTAGAGTTAAAAAACTCAGTTCCATTATCAGTTCTCACAACTTGAACTTTAACACCAAATTGTGTATTAACCATCAACATAAAGTCTTTCAATATAATGTGCACATCTGATTTGTGTTGAACTAGACAAAGCCAAGTAAATCTACTGAAATCATCAACAATTGTCACAAAATACTGCTTATTATCATGTGTAAGAACTTTGTAAGGTCCCCAGAGATCAACATGAAGAAGTTGAAAATTATGAGTTGACTTAGAATTACTTGTAGGAAAACTCAATCTACTTTGTTTGGCCACTGGACATATTTGACAGCAATTGTATGTGGAGATGTTGAAGTACTTCTTAAGAGAAATTATCTGTTCCATAACTTTGATAGGTGGATGTCCAAGTCTGAAATGCCACAAGTCAGCCAAACTTGCACCCTTTTTTGATGTTGAAGCTGAATTAACTCTTGCTCTAACAGTACTTTGTAGTAGGTATAAACCATCAATCTCTTTACCAATCCCAATCACCTTGCCATTGTAAAGTTCCTGCAGTACACAAAAGTGAGGAAAGAAACTCACACTACAAGATAATTCCTTGGTGAGTTTTGCCACAGATAGTAAATTGAACTTAAAATCAGGTACATGAAGTACATTCTTCACTGTCTGATTTCCAAAAATGACTGAATTGCCTGTATGTTTCACTTGAGCTCTGCTTCCTGTTGGCAACTGAACTGTACTCGAGTATTCATTCTTTGTGTTTTTCAATTCATACATGAGCTCCTCATATGAAGCAACATGATGAGTAGCTCCTGAATCAATTATCCAGTCATATGCAGATGATTTAGTCTGTAAAGAAACATTACCTGTCAAGTTAGCCTTGCAGTCACTTGGTTCTTTGTTGTGTAACAGATTCTTCATTTGATTGTATTCTTTCTTTGTGAATTCAGATTCCTCCCTCTGTTTATCTATTGAAGCATTGTTAGCATATGGCTTAAAGTTTCCAGAATTTCCAGTGTTGTTGTAAGTATTACTACTGTAAGAACCATGTGATCTAAAACCTTCATTGTTGTTCTGGTATGATCCAGTAGAATCTGATTGTTTCCTCTTACTCTTGAAGTCAGAAGGATATCCTACCAGCCTATAGCACTTTTCAGTTACATGATTTTTGAAACCACAGATCTCACATCCAGTATTGTTATTGCCTGGCAATACTTTCTTCCCTTTGAATCCTTGTCCTTGTCCTTTTCCTGCCATCATAGTAAGTGGTTCTTTATTTGAATCCACAACACCTAATACTCTTTGGCTTTCCTCTTGAATTACAGTTGCATAAGCTTGGTTAATTGTAGGTACCTCACTTTTCAGCAACAAATCACTTCTCACATGACTGAAAGTCTCATTTAACCCCATCAAGAACATCATCAATCTTTGTTGATGTAAATGCTCAATGTAAGGCTTAGCATCATCACATTTACATGATGGTGAAGGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAATAATACTCTGTTACAGAATCCGTACCTTGCTTTAATGTGGCTACTTCTGTCCAAAGTTGATAGATCCTAGTAAGATTAGATTTATCAAACCTCTCCTTGAAATCTTCCCAAACTCGTTTTGCATTTGATGCATATACTATTGTTGTTAACAAATTGTTTGCTACTGTGCTGCTAATCCATGAAAGAACCACTGCATTGCACCTTTCCCATTGAACTGCTAATTCATCCTTGTACATACTCTTTAAACAGGTTCCATCTATGAAGCCTATCTTGTTCTTCACCAACAGTGCCAATCTCATCGATCTGCTCCAAAGACCATAATTCTCAGGTCCTGTAAGCTTTGTTGTGATCAATGCAACACCAGGCGTGTCTGAAGGCTGCAGATAGAGTGGATGATTGTGTCCAAGAGTTGCTACAGTAAGTTCTGCCATGGCTATAATCTGATCTTCAAAAATTACTTCGCGGAAAGAAAAAATTCGAAATCAAATTAGTCCTAATTACGCCCGCTCTGATACCATGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATAAAATGGAAGGTCCTTTAGGAAGAAGCATCACACAACTTAAGCAATTAGTTGTCCTCAATGTTGCTCGAAACTCTTTCAATGACTCGATTACAGAACATTTCTTGAATTTAACTGATTTGAGAGTGTTAGACTTGTCATCCAACTCGTTTATCTTCAACGTAAGTGCAACTTGGATGCCTCGTTTCCAACTTGAGTTTATAAGCCTGCAGTCTTGCGGACTTGGTGCACGATTTCCTCAGTGGCTTCAGACACAGAAAGAGTTGTCATTTATTGATATCTCTCGCGTTAACATCTCAGGACATGTGCCTGATTGGTTCTGGAATTTTTCTGCTAAGGTTAATCACATAGACCTTTCGCAGAACTATATCGGAGGACAAGTCCCTGATTTTACAGAGAGAGTTCATCTTACAAAATTGGACCTGAGTGACAACAATTTTCATGGTCCTTTGCCTCATTTTTCACCCAATATGATGACACTGATTTTGGCAAGTAACTCCTTTAACGGTACTATCGCCCCTGTATGTGAATCGCTTGTCATGAATAACTCTCTCAGTCTTCTAGACCTATCCTCAAATTCTCTATCAGGACAACTTTTAGACTGTTGGAGATATGGGAAGAATCTGCAAGGATTGAATTTAGGCCATAATGATCTATCAGGGGAGATACCTCGTTCCATCGGAGATCTTGCCAATCTCTTCTTTCTGCAATTGCAAAACAACAAGTTCTCCAAAAATATGCCTTCATCATTGAAGAACATAAGTGCACTAAAAATTCTTGATGTTTCTGAAAATAGTTTATCTGGAAAGATACCAAATTGGTTAGGAGAGAGTTTAAATACTCTAGAGATTCTTAAATTAAGCGGAAACATGTTTGACGGAACCATTCCTAGGGAGATTTGCCAGCTTAAATACTTGTATACTTTGGACCTTAGTTCCAATGCACTATCAGGAGTCATTCCAAGGTGTGTTGATAATCTCCGCACCATGTCCGGAGAAGAGGAGGCTCCTTCCTTTACTCATGGACCCTATGCAGATTACAGGGTTCAAGGAAGGATCGTTTTAAAGGGATACAGTTACGACATCTTTTTTCACTGGTCCTACGTAGTAATTGATCTATCAGACAATCATTTATCAGGGGAAATTCCCGAGGAAATCGCCAGCCTTACTGCACTGAGGAGCTTGAATTTATCATGGAATCATTTCACAGGAGCAATTCCACGTTACATTCACAAAATGCAGATTTTGGAATTTCTTGATCTTTCCAGGAATAAGCTGTCATGTACATTTCCTCCCGATATCATACAACTTCCACTTCTTGTGTTTGTGAATGTTTCTTTCAATGATTTGACAGGAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGAC</genome_strand>
        <mrna_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217990" ref_strand="+" ref_description="SGN-E217990 [cLEL-23-F4](-)">
      <seq>atgatcttcaatagaatctacagaatttgaaggtatattatcatctgcatgatcaaacatatccatttgtatgggagcagatgatacttcttctgtgataacatctttgaaaggaaatgaatcttccatgaatgtaatttccctgctcactgatatgacatgagtctccaaatccatgactttatatcctttttgtgtctctgagtacccaatgaagactgatcttgttgctcttggagcaaatttatctcttcttggcaaaactgatacaaaacataaacatccaaacaccctcaaatgttctagattaggtgctcgttcataaagaagttcatatggtgacttccttgtaatacagttgtaggcattctgtttatcagataagctgcagttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="19576" stop="18636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19353" g_stop="18926" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E217990" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19353" e_stop="18926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAA</genome_strand>
        <mrna_strand>ATGATCTTCAATAGAATCTACAGAATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATGGGAGCAG-AT--------------GATACTTCTTCTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAATTTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTCATAAAGAAGTTCATATGGTGACTT-CCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284160" ref_strand="+" ref_description="SGN-E284160 [cLER-13-N8]">
      <seq>ttttttaaggggattaagaacttcaaaatctaccattatgtaattaaaatatttatattcaatcaaattttaatttagtaaagggacaaaatgacaattcgacttttcacttgtaataatatatgatctctgcagcaaaacttcttccttggagcaaatgaacaatgtagtggggaatgaattaactcagcaggcttccaaagcagcagatgcgtactacttttcagttttttgttcttgactaatccttgctaacccacctttgaccacgaacttgaatagcaccaaagttctgatcactgctactttctccaccactttctgcactcgtatattcagattttcgacggtgcttcttcttcgtagaagttccactatcgcttacgcttccgttcaaaagaggatcatcgatcccacgtatgactcttcttgttggagatgatgaggcaaaccactatcgtcctttgtttttctccctttgtcatgcttctttatgttctgagagatttcatgtaatttttgtattcctttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33524" stop="32392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33228" g_stop="32692" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E284160" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33228" e_stop="32692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAACACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</genome_strand>
        <mrna_strand>TTTTTTAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAA-ACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218177" ref_strand="+" ref_description="SGN-E218177 [cLEL-23-N18](-)">
      <seq>atacgtgggatcgatgatcctcttttgaacggaagcgtaagcgatagtggaacttctacgaagaagaagcaccgtcgaaaatctgaatatacgagtgcagaaagtggtggagaaagtagcagtgatcagaactttggtgctattcaagttcgtggtcaaaggtgggttagcaaggattagtcaagaacaaaaaactgaaaagtagtacgcatctgctgctttggaagcctgctgagttaattcattccccactacattgttcatttgctccaaggaagaagttttgctgcagagatcatatattattacaagtgaaaagtcgaattgtcattttgtccctttactaaattaaaatttgattgaatataaatattttaattacataatggtagattttgaagttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="32508" stop="33515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32808" g_stop="33214" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="423"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32808" e_stop="33214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</genome_strand>
        <mrna_strand>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227422" ref_strand="+" ref_description="SGN-E227422 [cLEL-30-M16](-)">
      <seq>cgtaagcgatagtggaacttcttcgaagaagaagcaccgtcgaaaatctgaatatacgagtgcagaaagtggtggagaaagtagcagtgatcagaactttggtgctattcaagttcgtggtcaaaggtgggttagcaaggattagtcaagaacaaaaaactgaaaagtagtacgcatctgctgctttggaagcctgctgagttaattcattccccactacattgttcatttgctccaaggaagaagttttgctgcagagatcatatattattacaagtgaaaagtcgaattgtcattttgtccctttactaaattaaaatttgattgaatataaatattttaattacacaatggtagattttgaagttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="32543" stop="33515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32843" g_stop="33214" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="389"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E227422" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32843" e_stop="33214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</genome_strand>
        <mrna_strand>CGTAAGCGATAGTGGAACTTCTTCGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACACAATGGTAGATTTTGAAGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364495" ref_strand="+" ref_description="SGN-E364495 [cLPP-18-K4]">
      <seq>tcttgtctccttctcttcttctccctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgcataatgccaagactgtgaaagaaataaggtctaggatggattcagatgtgtcacaggtcctaaaacgcgttaagatgatcaaaggaaaattggaagccctcgaacgatccaatgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33680" stop="34864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33980" g_stop="34564" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E364495" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33980" e_stop="34564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCTCCTTCTCTTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCT</genome_strand>
        <mrna_strand>TCTTGTCTCCTTCTCTTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCCTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361954" ref_strand="+" ref_description="SGN-E361954 [cLPP-11-C12]">
      <seq>tctccttctcttcttctccctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33685" stop="34728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33985" g_stop="34428" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E361954" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33985" e_stop="34428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTCTCTTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGA</genome_strand>
        <mrna_strand>TCTCCTTCTCTTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360090" ref_strand="+" ref_description="SGN-E360090 [cLPP-14-O13]">
      <seq>ttcttctccctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgcataatgccaagactgtgaaagaaataaggtctaggatggattcagatgtgtcacaggtcctaaaacgcgttaagatgatcaaaggaaaattggaagccctcgaacgatccaatgcagctcataggaagatctcggggtgtggaccaggttcttctgcagatcgaacaaggacttctgtagttagtggtttaggaaagaaattaaaagtactcatggatgattttcaaggattgaggacaagaatgaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33695" stop="34997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33995" g_stop="34697" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E360090" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33995" e_stop="34697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG----AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATG</genome_strand>
        <mrna_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCCTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361547" ref_strand="+" ref_description="SGN-E361547 [cLPP-6-D23]">
      <seq>ttcttctccctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33695" stop="34746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33995" g_stop="34446" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E361547" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33995" e_stop="34446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCA</genome_strand>
        <mrna_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360930" ref_strand="+" ref_description="SGN-E360930 [cLPP-13-C18]">
      <seq>ttcttctccctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33695" stop="34734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33995" g_stop="34434" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E360930" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33995" e_stop="34434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAG</genome_strand>
        <mrna_strand>TTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547361" ref_strand="+" ref_description="SGN-E547361 [TUS-71-D6]">
      <seq>ctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgcataatgccaagactgtgaaagaaataaggtctaggatggattcagatgtgtcacaggtcctaaaacgcgttaagatgatcaaaggaaaattggaagccctcgaacgatccaatgcagctcataggaagatctcggggtgtggaccaggttcttctgcagatcgaacaaggacttctgtagttagtggtttaggaaagaaattaaaagtactcatggatgattttcaaggattgaggacaagaatgaatgatgaatataaggaaacagttgcnagaaggtactttactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33704" stop="35036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="34736" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E547361" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="34736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGA</genome_strand>
        <mrna_strand>CTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCCTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCNAGAAGGTACTTTACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362132" ref_strand="+" ref_description="SGN-E362132 [cLPP-11-M20]">
      <seq>tcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="33705" stop="34750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34005" g_stop="34450" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E362132" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34005" e_stop="34450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAAT</genome_strand>
        <mrna_strand>TCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547360" ref_strand="+" ref_description="SGN-E547360 [TUS-71-D6](-)">
      <seq>tgatcaaaggaaaattggaagccctcgaacgatccaatgcagctcataggaagatctcggggtgtggaccaggttcttctgcagatcgaacaaggacttctgtagttagtggtttaggaaagaaattaaaagtactcatggatgattttcaaggattgaggacaagaatgaatgatgaatataaggaaacagttgcaagaaggtactttactgtgacaggagagaaagctgacgatgggttaattgagaatttgatatcaagtggggagagcgagtctttcctccaaaaggcaatccaggaacaaggtaggggtcagattatggacacaatttccgaaatacaagaaagacatgatgctgtgaaagagattgagaagaatttgattgagctacaccaaatatttttagacatggctgcattggtggaagcacaagggcaacaattaaatgatattgaaagtcatgtggcacatgcaagttcctttgttaggaggggcacagagcaattacaagaagctagggagattcaaaaaagttcaagaaagtgtgcttgttttgctgttttccttatcattttgcttatcattcttcttactttcccactatggtggccattagttgctagcaaaatattataagatgacctttttttttttgggcaatatgactattgtttgtaagaattttattcttgtattcattgtcaacaatttgttttctttgacattgtatttatagaagcaatttttgtcacatcaatggttacatatatagacatgtttcaagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="34221" stop="35694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34521" g_stop="34826" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34827" i_stop="34911" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34912" g_stop="35404" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="799" r_length="493" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E547360" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34521" e_stop="34826"/>
          <exon e_start="34912" e_stop="35404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAGGTATTCATGTTTATCCTGATTTTCTTATCATATTTCGTATTTTCTCTCTCTTCTATTAATTTCTGCTTTGGATCTTAATTAACAGGTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTCATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTCTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACACCTATGTATT</genome_strand>
        <mrna_strand>TGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAG.....................................................................................GTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTTATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTTTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622433" ref_strand="+" ref_description="SGN-E622433 [72800]">
      <seq>gtggatcccccggcctgcaggttatcgatctcacttctcagaacaaagctatggctacctcgttgacaatggcggctcgtcgagcggcagccttcactcgattcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatggacctcctaaggtcgattgctggaaagaaccgatgaatcctgctcaatggaaggaagaacattttgtgattgtatctttgtccggttggggcttgcttttctatggtggatacaagttattcactggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggaatttacatggcatcatactgaggttgggatatttcaagtccaaaatcaagaagttctctctaataatacaacttattggacattcaattctcatttgatgaattttcttatcattataaaaattaccagagagcctgtgagctactaaatggtggacaaaagttgtttgcatcaatactgcaatgtacttttttcttttgtatacgataataaatgaaactggtttttgtcagtttgctttctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36237" stop="40112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36537" g_stop="36671" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="159" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="317" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39818" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="599" r_length="282" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E622433" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36537" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTAT-AAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATAC-TTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCA</genome_strand>
        <mrna_strand>TCGATCTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGATTCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGACCTCCTAAGGTCGATTGCTGGAAAGAACCGATGAATCCTGCTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGTATCTTTGTCCGGTTGGGGCTTGCTTTTCTATGGTGGATACAAGTTATTCACTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGAATTTACATGGCATCATACTGAGGTTGGGATATTTCAAGTCCAAAATCAAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCAATTCTCATTTGATGAATTTTCTTATCATTATAAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGTTTGCATCAATACTGCAATGTACTTTTTTCTTTTGTATACGATAATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265170" ref_strand="+" ref_description="SGN-E265170 [cLEI-2-K24]">
      <seq>ctcacttctcagaacaaagctatggctacctcgtggacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36242" stop="37167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36542" g_stop="36671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="166" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E265170" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36542" e_stop="36671"/>
          <exon e_start="36832" e_stop="36867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAG</genome_strand>
        <mrna_strand>CTCACTTCTCAGAACAAAGCTATGGCTACCTCGTGGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596062" ref_strand="+" ref_description="SGN-E596062 [39347]">
      <seq>cttctcagaacaaagctatggctacctcgttgacaatggcggctcggcgggcggcagccttcactcgattcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgctgctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctgctcaatggaaggaagaacattttgtgattgtatctttgtccggctggggtttgcttttctatggtggatacaagttattcactggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggaattttacgtggcatcatactgaggttgggatatttcaagtccaaaatcaagaagttctctctaataatacaacttattggacattcaattctcatttgatgatttttcttatcattataaaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatacttctttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttcaaaaaaaagcaacaaaacaccacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36246" stop="40112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36546" g_stop="36671" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="197" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="284" r_length="87" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39813" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="562" r_length="278" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E596062" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36546" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTA-TTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTAT-AAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTT-TTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAG</genome_strand>
        <mrna_strand>CTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGGCGGGCGGCAGCCTTCACTCGATTCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCTGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGCTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGTATCTTTGTCCGGCTGGGGTTTGCTTTTCTATGGTGGATACAAGTTATTCACTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGAATTTTACGTGGCATCATACTGAGGTTGGGATATTTCAAGTCCAAAATCAAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCAATTCTCATTTGATGATTTTTCTTATCATTATAAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTCTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711949" ref_strand="+" ref_description="SGN-E711949 [FB03BH06]">
      <seq>cttctcagaacaaagctatggctacctcgttgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggagggcagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36246" stop="39889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36546" g_stop="36671" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="197" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="284" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39589" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="335" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E711949" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36546" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTG</genome_strand>
        <mrna_strand>CTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGGCAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691640" ref_strand="+" ref_description="SGN-E691640 [LH_Ea06K06]">
      <seq>cccgttaaaagctatggctacctcgttgacaatggcggctcctctagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggaatttacatggcatcatactgaggttgggatatttcaagtccaaaatcgagaagttctctctaataatacaacttattggacattcatttctcatttgatgaattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatacttctttcttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36257" stop="40112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36550" g_stop="36671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="193" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="280" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39813" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="554" r_length="274" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E691640" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36550" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAG</genome_strand>
        <mrna_strand>CCCGTTAAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCCTCTAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGAATTTACATGGCATCATACTGAGGTTGGGATATTTCAAGTCCAAAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTCTCATTTGATGAATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTCTT-TCTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695480" ref_strand="+" ref_description="SGN-E695480 [LH_Ea06K06](-)">
      <seq>gaacaaagctatggttacctcgttgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaaaaaaaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggaatttacatggcatcatactgaggttgggatatttcaagtccaaaatcgagaagttctctctaataatacaacttattggacattcatttctcatgtgatgaattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggncaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36253" stop="40032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36553" g_stop="36671" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="190" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="277" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39729" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="468" r_length="191" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E695480" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36553" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAA</genome_strand>
        <mrna_strand>GAACAAAGCTATGGTTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAAAAAAAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGAATTTACATGGCATCATACTGAGGTTGGGATATTTCAAGTCCAAAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTCTCATGTGATGAATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGNCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573773" ref_strand="-" ref_description="SGN-E573773 [33136]">
      <seq>caaagctatggctacctcgttgacaatggcggctcgtcgagcggcagccttcactcgattcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatggacctcctaaggtcgattgctggaaagaaccgatgaatcctgctcaatggaaggaagaacattttgtgattgtatctttgtccggttggggcttgcttttctatggtggatacaagttattcactggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggaatttacatggcatcatactgaggttgggatatttcaagtccaaaatcaagaagttctctctaataatacaacttattggacattcaattctcatttgatgaattttcttatcattataaaaattaccagagagcctgtgagctactaaatggtggacaaaagttgtttgcatcaatactgcaatgtacttttttcttttgtatacgataataaatgaaactggtttttgtcaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36256" stop="40099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36556" g_stop="36671" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="187" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="274" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39799" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="537" r_length="263" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="557"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E573773" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573773" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36556" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTAT-AAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATAC-TTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCA</genome_strand>
        <mrna_strand>CAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGATTCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGACCTCCTAAGGTCGATTGCTGGAAAGAACCGATGAATCCTGCTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGTATCTTTGTCCGGTTGGGGCTTGCTTTTCTATGGTGGATACAAGTTATTCACTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGAATTTACATGGCATCATACTGAGGTTGGGATATTTCAAGTCCAAAATCAAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCAATTCTCATTTGATGAATTTTCTTATCATTATAAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGTTTGCATCAATACTGCAATGTACTTTTTTCTTTTGTATACGATAATAAATGAAACTGGTTTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306432" ref_strand="+" ref_description="SGN-E306432 [cLEX-13-P16]">
      <seq>tacctcgttgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36268" stop="40098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36568" g_stop="36671" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="175" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="262" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39798" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="522" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E306432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36568" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTC</genome_strand>
        <mrna_strand>TACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540192" ref_strand="+" ref_description="SGN-E540192 [TUS-60-F11]">
      <seq>tgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatgccactgagagttgtgttaatgaagatgtcatcaaacaattgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36276" stop="40263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36576" g_stop="36671" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="167" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="254" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39972" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="688" r_length="434" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E540192" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36576" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTATTTCAAACT</genome_strand>
        <mrna_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540189" ref_strand="+" ref_description="SGN-E540189 [TUS-60-F11](-)">
      <seq>tgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatgccactgagagttgtgttaatgaagatgtcatcaaacaattggtaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36276" stop="40263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36576" g_stop="36671" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="167" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="254" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39958" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="674" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="697"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E540189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36576" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATT</genome_strand>
        <mrna_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286457" ref_strand="+" ref_description="SGN-E286457 [cLES-12-M17]">
      <seq>gacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="36277" stop="40218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36577" g_stop="36671" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="166" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="253" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39918" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="633" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36577" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATG</genome_strand>
        <mrna_strand>GACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705268" ref_strand="+" ref_description="SGN-E705268 [FA26CE10]">
      <seq>attttttctcttgcgaagatcaaattcagacccacaacaatctctctgtaaaatgtatgaacacaactctttcataatcgaccaggcgtacgagttctcagcgccaagattttatgactttgttgatgaagaaacagaagaggaaaaacggaaagctgagcattggttccacatctcaagaagctatgctccttctccttttatgccaaaaattaaaactggtagaatggttcaacttgagagcctatgtgacttcactgatgctgaggagttgcaagataacacaaggcctgctactgagctcacttcttctaaaagtaaagacgaggtaatgccaaatttaattgtaccagaaccttgcaccaatcttccaaatccggaatctaaagagaagcagtctattgttcaagaaacttgcacgcccggaccaacaataacatctcagaagagcgactctcggaagactaattccaagaggcaacaaactgctgaaaagattgcaagcatacttagaaacccttcagcattaaagtcaaaaactcaacaacaacagtcgcatctgaggagttctaatcaagctactgttagaaagcaagccatcaagaaaagtgatgctggaactccaaattttgcccaagaaaaccaagccagtaaagagacaaaaactaaaagaaggaaaatctaggaagattcttgatatcaaacctcctcaacatttgccacacaaaacaagacttggggtagctaatagcagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="55085" stop="57566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55385" g_stop="55581" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56103" g_stop="56193" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="288" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56369" g_stop="56459" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="379" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91">
            <donor d_prob="0.022" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56551" g_stop="56581" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="410" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.713" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56669" g_stop="56849" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="591" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56850" i_stop="56997" i_length="148">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56998" g_stop="57094" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="689" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57095" i_stop="57197" i_length="103">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57198" g_stop="57266" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="758" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E705268" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55385" e_stop="55581"/>
          <exon e_start="56103" e_stop="56193"/>
          <exon e_start="56369" e_stop="56459"/>
          <exon e_start="56551" e_stop="56581"/>
          <exon e_start="56669" e_stop="56849"/>
          <exon e_start="56998" e_stop="57094"/>
          <exon e_start="57198" e_stop="57266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTCTTGCGAAGATCAAATTCAGACCCACAACAATCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTCGTATGTCATTTTCTTCTTCATCCTCTGTTACACTATTTGGGTTCTCTGTTTTGTGCGTTTGTGTAATTTGATAGCAACATGAAAGTTCAGGTAGCCAACCAAATGATGTCAACTTTAGAATCATATTTGATAATTTGGTATTTTTTCCCCTATTAATGGAATCTGTAGTAATGCAGAACAGTTAGTGGTAGTTAAAATGCATTGATAAAGCCTTCTACTTTATCAAGCATACGGATCTTACAATCAATGAACATTTTGACTTGACTGTGAAGAACTTCAAATAAGTGTAGTGTAGTTGAAATTTCCATCACAACCACTCCTACATATAGGTGGTACCAACCACTGATGTTATGTTTGATCTGTTTATTCAATGCATACTTCTGTTTCATCGCGTATGTATACGATAAATGTGGACTGTAATAATGTCCTGGCGATTTTGGGATGACATGTTGATTGCTTATGTTTATTAGAGTGACAATTTTGGGATGAGATGTTGATTTTCTTCTTGGTTGTTTTTCCAGCTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAGGTCTGTAACTATTTTATATTGCAAAAAGCAAATGATTATGTTCTTACCTGTGTTGCTCGGAGTCTCCAAAATGTGATCCTCCAAAACTCATTAACCCGATAACATTTTTGAAGCGTCTTGAGCAACATAGGTTCTTAATGGTGTCAATGTACTGACATTACTATCTGAAAAACAGGCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCGGTATGCATCACTCATAACTTGTAGTAGAGAAGAAGCACCATTTGCTGCGCCTTTTTGAACACTGTCTTATCTTGTCTTTGTAATTTTCCAGGAATCTGAAGAGAAGCAGTCTATTGTTCAAGGTAAATTGTACTATGAGAATCCTATTCTTATATCCTTAGAATGAATTTGGCTGATAAAGATTCTAATTTAGCACTTGTATGTAACAGAAACTTGCACACCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTAATCAAGCTACTGTTAGAAAGTAAGTGACACTACAGATTTTCTTAATGCTCTAGCTGTTCTTTGGTAAAAAGTAAGTGAATTTCATTTGCTGCTGCACATGTAGATTTTCTTAATGCTCTAGCTGTTCTTTGGTAAAAAGTAAGTGAATTTCATTTGCTGCTGCACAGGCAAGCCATCAAGAAAAGTGATGCTGGAACTCCAAATTTTGCCCAAGAAAACCAAG-CAGTAAAGAGACAAAAACTAGAAGAAGGAAAATCTAGGAAGGTAAGTGTCTCCTCTCTAGATCTTCTCTGGATGTGAATTGTGCAGAATATTTCATGTTACTTTATCTGATGATCTTGCTTTTTCTTTCTTTACAAACTGCTAGATTCTTGATATTAAACCTCCTCAACATTTGCCACACAAAACAAGACTTGGGGTAGCTAATAGCAGCTCT</genome_strand>
        <mrna_strand>ATTTTTTCTCTTGCGAAGATCAAATTCAGACCCACAACAATCTCTCTGTAAAATGTATGAACACAACTCTTTCATAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAAAACGGAAAGCTGAGCATTGGTTCCACATCTCAAGAAGCTATGCTCCTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAG...............................................................................................................................................................................GCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAATGCCAAATTTAATTGTACCAGAACCTTGCACCAATCTTCCAAATCCG...........................................................................................GAATCTAAAGAGAAGCAGTCTATTGTTCAAG.......................................................................................AAACTTGCACGCCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTGAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGGAGTTCTAATCAAGCTACTGTTAGAAA....................................................................................................................................................GCAAGCCATCAAGAAAAGTGATGCTGGAACTCCAAATTTTGCCCAAGAAAACCAAGCCAGTAAAGAGACAAAAACTAAAAGAAGGAAAATCTAGGAAG.......................................................................................................ATTCTTGATATCAAACCTCCTCAACATTTGCCACACAAAACAAGACTTGGGGTAGCTAATAGCAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330914" ref_strand="+" ref_description="SGN-E330914 [cTOD-10-E4]">
      <seq>tctctctgtaaaatgtatgaacacaactctttcgtaatcgaccaggcgtaccgagttctcagcgccaagattttatgactttgttgatgaagaaacagaagaggaaacacagaaagctgagcattggttccacatttcaagaagctatgctccttctccttttatgccaaaaattaaaactggtagaatggttcaacttgagagcctatgtgacttcactgatgcctgaggagttgcaagataacacaaggcctgctactgagctcacttcttctaaaagtaaagacgaggtaaccccatatttaattgtaccagaaccttgcaccagtcttcctaatccggaatctgaagagaagcagtctattgttcaagaaacttgcaccacccggaccaacaataacatctcagaagagccgactctcggaagactaattccaagaggcaacaaactgctaaaaagattgcaagcatacttagaaacccttcagcattaaagtcaaaaactcaacaaccacagtcgcatctgagtagttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="55125" stop="57130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55425" g_stop="55581" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56103" g_stop="56193" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="250" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56369" g_stop="56459" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="341" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91">
            <donor d_prob="0.022" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56551" g_stop="56581" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="372" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.713" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56669" g_stop="56830" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="536" r_length="164" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E330914" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55425" e_stop="55581"/>
          <exon e_start="56103" e_stop="56193"/>
          <exon e_start="56369" e_stop="56459"/>
          <exon e_start="56551" e_stop="56581"/>
          <exon e_start="56669" e_stop="56830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTA-CGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTCGTATGTCATTTTCTTCTTCATCCTCTGTTACACTATTTGGGTTCTCTGTTTTGTGCGTTTGTGTAATTTGATAGCAACATGAAAGTTCAGGTAGCCAACCAAATGATGTCAACTTTAGAATCATATTTGATAATTTGGTATTTTTTCCCCTATTAATGGAATCTGTAGTAATGCAGAACAGTTAGTGGTAGTTAAAATGCATTGATAAAGCCTTCTACTTTATCAAGCATACGGATCTTACAATCAATGAACATTTTGACTTGACTGTGAAGAACTTCAAATAAGTGTAGTGTAGTTGAAATTTCCATCACAACCACTCCTACATATAGGTGGTACCAACCACTGATGTTATGTTTGATCTGTTTATTCAATGCATACTTCTGTTTCATCGCGTATGTATACGATAAATGTGGACTGTAATAATGTCCTGGCGATTTTGGGATGACATGTTGATTGCTTATGTTTATTAGAGTGACAATTTTGGGATGAGATGTTGATTTTCTTCTTGGTTGTTTTTCCAGCTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATG-CTGAGGAGTTGCAAGATAACACAAGGTCTGTAACTATTTTATATTGCAAAAAGCAAATGATTATGTTCTTACCTGTGTTGCTCGGAGTCTCCAAAATGTGATCCTCCAAAACTCATTAACCCGATAACATTTTTGAAGCGTCTTGAGCAACATAGGTTCTTAATGGTGTCAATGTACTGACATTACTATCTGAAAAACAGGCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCGGTATGCATCACTCATAACTTGTAGTAGAGAAGAAGCACCATTTGCTGCGCCTTTTTGAACACTGTCTTATCTTGTCTTTGTAATTTTCCAGGAATCTGAAGAGAAGCAGTCTATTGTTCAAGGTAAATTGTACTATGAGAATCCTATTCTTATATCCTTAGAATGAATTTGGCTGATAAAGATTCTAATTTAGCACTTGTATGTAACAGAAACTTGCA-CACCCGGACCAACAATAACATCTCAGAAGAG-CGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTA</genome_strand>
        <mrna_strand>TCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACCGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCCTGAGGAGTTGCAAGATAACACAAG...............................................................................................................................................................................GCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACCCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCG...........................................................................................GAATCTGAAGAGAAGCAGTCTATTGTTCAAG.......................................................................................AAACTTGCACCACCCGGACCAACAATAACATCTCAGAAGAGCCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACCACAGTCGCATCTGAGTAGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604541" ref_strand="+" ref_description="SGN-E604541 [74677]">
      <seq>ctcaatccatttctctcnttgcaaagnnatcaaattcagacccacaaatctctctgaaaaattcactcaaaaatgtatgatcccaactcgtttgtaatcgacgaggcgtatgagttctcagcgcccagattttatgactttgttgatgaagaaacggaagacgaaacacggaaagctgagcattggttccacatttcaagaagctatgctccttctccttttatgccaaaaatcaaaactgctagaatggttcaacttgagagcctatgtgatttcactgatgctgatgagttgcaggataacacaaggactgctgctgtgctcacttcttctaaaagtaaagacgaggtaacgccaaatttgatcataccagaaccttgcaccagtcttcctaatctggaatctgaagagaagaagcagtctactgtgcgagaaacttgcacgcccggaccaacaataacagctcagaagaacgactctcggaagactaactccaagaggcaacaaactgctaaaaagattgcaagcatacttagaaacccttcagcattaaagtcaaaaactcaaccacaacagtcacatctgaggagttctaatcaagctactgttagaaagcaagccattaacaaaagtgatgttggaactccaaattttgctcaagaaaatcaagcagtaaagagacaaaaactagaagagggaaaatctaggaagattcttgatatcaaacctcctcaacatttgccacacaaaacaagacttggggttactaatagcagtctaacttgttcgcatcttgcaggtaaaaactcgaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="55115" stop="57602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55434" g_stop="55581" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="217" r_length="148" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56103" g_stop="56193" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="308" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56369" g_stop="56459" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="399" r_length="91" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91">
            <donor d_prob="0.022" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56551" g_stop="56581" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="433" r_length="34" r_score="0.710"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.713" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56669" g_stop="56849" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="614" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56850" i_stop="56997" i_length="148">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.786" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56998" g_stop="57094" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="711" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57095" i_stop="57197" i_length="103">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57198" g_stop="57302" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="817" r_length="106" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E604541" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55434" e_stop="55581"/>
          <exon e_start="56103" e_stop="56193"/>
          <exon e_start="56369" e_stop="56459"/>
          <exon e_start="56551" e_stop="56581"/>
          <exon e_start="56669" e_stop="56849"/>
          <exon e_start="56998" e_stop="57094"/>
          <exon e_start="57198" e_stop="57302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTCGTATGTCATTTTCTTCTTCATCCTCTGTTACACTATTTGGGTTCTCTGTTTTGTGCGTTTGTGTAATTTGATAGCAACATGAAAGTTCAGGTAGCCAACCAAATGATGTCAACTTTAGAATCATATTTGATAATTTGGTATTTTTTCCCCTATTAATGGAATCTGTAGTAATGCAGAACAGTTAGTGGTAGTTAAAATGCATTGATAAAGCCTTCTACTTTATCAAGCATACGGATCTTACAATCAATGAACATTTTGACTTGACTGTGAAGAACTTCAAATAAGTGTAGTGTAGTTGAAATTTCCATCACAACCACTCCTACATATAGGTGGTACCAACCACTGATGTTATGTTTGATCTGTTTATTCAATGCATACTTCTGTTTCATCGCGTATGTATACGATAAATGTGGACTGTAATAATGTCCTGGCGATTTTGGGATGACATGTTGATTGCTTATGTTTATTAGAGTGACAATTTTGGGATGAGATGTTGATTTTCTTCTTGGTTGTTTTTCCAGCTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAGGTCTGTAACTATTTTATATTGCAAAAAGCAAATGATTATGTTCTTACCTGTGTTGCTCGGAGTCTCCAAAATGTGATCCTCCAAAACTCATTAACCCGATAACATTTTTGAAGCGTCTTGAGCAACATAGGTTCTTAATGGTGTCAATGTACTGACATTACTATCTGAAAAACAGGCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCGGTATGCATCACTCATAACTTGTAGTAGAGAAGAAGCACCATTTGCTGCGCCTTTTTGAACACTGTCTTATCTTGTCTTTGTAATTTTCCAGGAATCTG-A-AGA-GAAGCAGTCTATTGTTCAAGGTAAATTGTACTATGAGAATCCTATTCTTATATCCTTAGAATGAATTTGGCTGATAAAGATTCTAATTTAGCACTTGTATGTAACAGAAACTTGCACACCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTAATCAAGCTACTGTTAGAAAGTAAGTGACACTACAGATTTTCTTAATGCTCTAGCTGTTCTTTGGTAAAAAGTAAGTGAATTTCATTTGCTGCTGCACATGTAGATTTTCTTAATGCTCTAGCTGTTCTTTGGTAAAAAGTAAGTGAATTTCATTTGCTGCTGCACAGGCAAGCCATCAAGAAAAGTGATGCTGGAACTCCAAATTTTGCCCAAGAAAACCAAGCAGTAAAGAGACAAAAACTAGAAGAAGGAAAATCTAGGAAGGTAAGTGTCTCCTCTCTAGATCTTCTCTGGATGTGAATTGTGCAGAATATTTCATGTTACTTTATCTGATGATCTTGCTTTTTCTTTCTTTACAAACTGCTAGATTCTTGATATTAAACCTCCTCAACATTTGCCACACAAAACAAGACTTGGGGTAGCTAATAGCAGCTCTAACTTGTTTGCATC-TGCAGCT-AAAACTCGAAAAGAG</genome_strand>
        <mrna_strand>AAAATGTATGATCCCAACTCGTTTGTAATCGACGAGGCGTATGAGTTCTCAGCGCCCAGATTTTATGACTTTGTTGATGAAGAAACGGAAGACGAAACACGGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCCAAAAATCAAAACTGCTAGAATGGTTCAACTTGAGAGCCTATGTGATTTCACTGATGCTGATGAGTTGCAGGATAACACAAG...............................................................................................................................................................................GACTGCTGCTGTGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCAAATTTGATCATACCAGAACCTTGCACCAGTCTTCCTAATCTG...........................................................................................GAATCTGAAGAGAAGAAGCAGTCTACTGTGCGAG.......................................................................................AAACTTGCACGCCCGGACCAACAATAACAGCTCAGAAGAACGACTCTCGGAAGACTAACTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACCACAACAGTCACATCTGAGGAGTTCTAATCAAGCTACTGTTAGAAA....................................................................................................................................................GCAAGCCATTAACAAAAGTGATGTTGGAACTCCAAATTTTGCTCAAGAAAATCAAGCAGTAAAGAGACAAAAACTAGAAGAGGGAAAATCTAGGAAG.......................................................................................................ATTCTTGATATCAAACCTCCTCAACATTTGCCACACAAAACAAGACTTGGGGTTACTAATAGCAG-TCTAACTTGTTCGCATCTTGCAGGTAAAAACTCGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417896" ref_strand="+" ref_description="SGN-E417896 [STM-26-I6]">
      <seq>ctctcttgcaaagatcaaattcagacccacaaatctctctgaaaaattcactcaaaaatgtatgatcccaactcgtttgtaatcgacgaggcgtatgagttctcagcgcccagattttatgactttgttgatgaagaaacggaagacgaaacacggaaagctgagcattggttccacatttcaagaagctatgctccttctccttttatgccaaaaatcaaaactgctagaatggttcaacttgagagcctatgtgatttcactgatgctgatgagttgcaggataacacaaggactgctgctgtgctcacttcttctaaaagtaaagacgaggtaacgccaaatttgatcataccagaaccttgcaccagtcttcctaatctggaatctgaagagaagaagcagtctactgtgcgagaaacttgcacgcccggaccaacaataacagctcagaagaacgactctcggaagactaactccaagaggcaacaaactgctaaaaagattgcaagcatacttagaaacccttcagcattaaagtcaaaaactcaaccacaacagtcacatctgaggagttctaatcaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="55115" stop="57139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55434" g_stop="55581" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="202" r_length="148" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56103" g_stop="56193" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="293" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56369" g_stop="56459" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="384" r_length="91" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91">
            <donor d_prob="0.022" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56551" g_stop="56581" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="418" r_length="34" r_score="0.710"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.713" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56669" g_stop="56839" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="589" r_length="171" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E417896" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55434" e_stop="55581"/>
          <exon e_start="56103" e_stop="56193"/>
          <exon e_start="56369" e_stop="56459"/>
          <exon e_start="56551" e_stop="56581"/>
          <exon e_start="56669" e_stop="56839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTCGTATGTCATTTTCTTCTTCATCCTCTGTTACACTATTTGGGTTCTCTGTTTTGTGCGTTTGTGTAATTTGATAGCAACATGAAAGTTCAGGTAGCCAACCAAATGATGTCAACTTTAGAATCATATTTGATAATTTGGTATTTTTTCCCCTATTAATGGAATCTGTAGTAATGCAGAACAGTTAGTGGTAGTTAAAATGCATTGATAAAGCCTTCTACTTTATCAAGCATACGGATCTTACAATCAATGAACATTTTGACTTGACTGTGAAGAACTTCAAATAAGTGTAGTGTAGTTGAAATTTCCATCACAACCACTCCTACATATAGGTGGTACCAACCACTGATGTTATGTTTGATCTGTTTATTCAATGCATACTTCTGTTTCATCGCGTATGTATACGATAAATGTGGACTGTAATAATGTCCTGGCGATTTTGGGATGACATGTTGATTGCTTATGTTTATTAGAGTGACAATTTTGGGATGAGATGTTGATTTTCTTCTTGGTTGTTTTTCCAGCTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAGGTCTGTAACTATTTTATATTGCAAAAAGCAAATGATTATGTTCTTACCTGTGTTGCTCGGAGTCTCCAAAATGTGATCCTCCAAAACTCATTAACCCGATAACATTTTTGAAGCGTCTTGAGCAACATAGGTTCTTAATGGTGTCAATGTACTGACATTACTATCTGAAAAACAGGCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCGGTATGCATCACTCATAACTTGTAGTAGAGAAGAAGCACCATTTGCTGCGCCTTTTTGAACACTGTCTTATCTTGTCTTTGTAATTTTCCAGGAATCTGAAGAGAAG---CAGTCTATTGTTCAAGGTAAATTGTACTATGAGAATCCTATTCTTATATCCTTAGAATGAATTTGGCTGATAAAGATTCTAATTTAGCACTTGTATGTAACAGAAACTTGCACACCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTAATCAAGCTA</genome_strand>
        <mrna_strand>AAAATGTATGATCCCAACTCGTTTGTAATCGACGAGGCGTATGAGTTCTCAGCGCCCAGATTTTATGACTTTGTTGATGAAGAAACGGAAGACGAAACACGGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCCAAAAATCAAAACTGCTAGAATGGTTCAACTTGAGAGCCTATGTGATTTCACTGATGCTGATGAGTTGCAGGATAACACAAG...............................................................................................................................................................................GACTGCTGCTGTGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCAAATTTGATCATACCAGAACCTTGCACCAGTCTTCCTAATCTG...........................................................................................GAATCTGAAGAGAAGAAGCAGTCTACTGTGCGAG.......................................................................................AAACTTGCACGCCCGGACCAACAATAACAGCTCAGAAGAACGACTCTCGGAAGACTAACTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACCACAACAGTCACATCTGAGGAGTTCTAATCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343327" ref_strand="+" ref_description="SGN-E343327 [cTOF-17-J24]">
      <seq>agagattggaggaggaagaagctaagatgaggttattcaaggcgcaaccaatcttgattgaggatccaattccagttcctgagaaagaacgtaaacctttcactgaggttcaggaattcaatctgcatgtaaatcaccgtgctgttgacagaactgaatttgataagaagattaaggagaaagaaatgatgtataataggtatcaggaggaagcagaatgtgcaagaatgatggaagaggagaaggccttaaaacaactaaggagaactttggtacctcatgctagaccagtgcctaattttgatcatcctttcctacctcaaaagtcttccaaacatgtcacaagaccaagctcccccaagctacaggttattaaaaggaaagagaggaggaaaatgctctgcccctatgcagcagtttctagtgctgctgcctctcaaatgagatgatgattcaaatccgacgagatgagatgatgattgttcaagaattcttgaaccccctcctatatgttttatgtctaacagttatgtaataatagagatctgtattattttttgtagcattcagctagcttagcataatttaaaatgacaaatagttttgcgcctatgtaattatatcatattcatattatattattttatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="58838" stop="60420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59138" g_stop="59198" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59199" i_stop="59276" i_length="78">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59277" g_stop="59385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="170" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59386" i_stop="59461" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59462" g_stop="59521" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="230" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59522" i_stop="59602" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59603" g_stop="59697" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="325" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59698" i_stop="59791" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59792" g_stop="60126" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="660" r_length="335" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E343327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59138" e_stop="59198"/>
          <exon e_start="59277" e_stop="59385"/>
          <exon e_start="59462" e_stop="59521"/>
          <exon e_start="59603" e_stop="59697"/>
          <exon e_start="59792" e_stop="60126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGAGTAAGAACTTTGAGGAATATCAACTTTTCTACTCAGTAATACTGAAAGGTGGCTAATATTTTCTACGTAATAATGCAGGGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAGGTAAACTTTTTCCTCTTTAATCACATTCTTACGCTTTCGTATGGGTCTAGCACTCACCTAATAAGTTGTTGTGCAGATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATGGTATGCTCATATTATCAAACTATACTATTATTTTTCATTACAAAGTATGTAGACTAATTCCAATTTCTGGAACGCGGATAGATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAAGTAAGAATGTTACTGTTTGTGTTTCTTCTACCTTTCTTTTATTTGTCTTCCTCATACTAAGACGACATATAAGTCTATCCGTATACAACAACAGGTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAGTGAGA</genome_strand>
        <mrna_strand>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGA..............................................................................GGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAG............................................................................ATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATG.................................................................................ATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAA..............................................................................................GTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373220" ref_strand="+" ref_description="SGN-E373220 [TUS-31-B17](-)">
      <seq>gcaattccattatatgtctttggctgtcctcacaatttcatgcgtatagagcctgataagaattggtgcatctgcttgggagtttttattgtgctgcaggcatcaattcttctgttgcagcattaccttggatctcggtggttcattccacgtcagattttacctgagaagtataactattataaaaggtttgatcagggtgcaaatcacgccactgactgtgttatttgcatgactgctattgatcatactcaacgctcaaataattgcatggtgaccccttgtgatcatttctttcactctggttgtttgcaaaaatggatggacataaaaatggagtgtccaacatgccgacgtcctcttccacccgcttgaataaatgttatttcttgaattcatcttggtagagcaactgacattgcccgacctgtttagaaaggttggagacaaaaaaaattacataaaaagttttctgtataaaagttgagcacaaattcactagacttgctgtatatcttgttgattaactgtctattctttttttatatttcacataaaaacaataacattatcaaataattcatagaatttatggaatattttttaatttttatgtgccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="62140" stop="54897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61840" g_stop="61685" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61566" g_stop="61450" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="273" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.252" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61342" g_stop="61177" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="439" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61176" i_stop="60590" i_length="587">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60589" g_stop="60407" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="622" r_length="183" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60406" i_stop="59754" i_length="653">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.721" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59753" g_stop="59730" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="646" r_length="24" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E373220" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61840" e_stop="61685"/>
          <exon e_start="61566" e_stop="61450"/>
          <exon e_start="61342" e_stop="61177"/>
          <exon e_start="60589" e_stop="60407"/>
          <exon e_start="59753" e_stop="59730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGGTTTGATACTGCTTTCAGTTAAAATTCTTGAAAGGATTATTTGTTGAAAGCAGAAAAAAACTGAATAATTAGTGCTTCCATCTGTCTTATGTAAGTAAGCTTTATTGTGGTGTTGCAGATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTAACTATAAAAGAAAAATGCTCTAGCTTAATTTAGTGTTCCTATTAGAATGCGATTTTAACTCCAAAAAAAAATACACAGTTAGTAATTGGCCTAATGATGTTCAGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAGGTAAACGGCTTTACTTGAAGTTTATATTTGAACAAGTGAGTACAAATTCAGCAATAGTTCATAGTGATTTTACTTTTAATAATGCTGTTGTTTAAACTGTCTGCCTTGTAGCTTGCCATTGTCCGAGTAAAGACTACGGGTGTGGAGGAAAACATTTTCCGCAAAATGTTCTATAGTTCTCATGTTCGGTTGGTCAAAATTTTGGAAAATATTTTCTATAGGAAAACAAGCTCAATTTTGGAACACAGAAGTTGCCAGTCCAAATTGACTGTTTCCTCTCCACCCTCCAGGACCTCATTTTCACCCCATCTCCACCACGTCACGCTCCTACCTCCACACCCTCACCTCCAATAGTACTTATCTAGATTATCTACAAATGCTTTTAGGATAATATTTTTTTGCTTGCATTCTGAACACAGCAAGAAAATAAGTATGTAACTCATTGGTTTTCTTGGAAAATATTTTCGTTCCTTCAGAACCTGCCTTACGGCATGATAGATTTCCTTGTAAATAGATGTCTGAAGGTCGTTTTTCTGGCTATGATCCAGAAGGAAAAATGTTTGACAAGGCTTCATTCTCTCTTTCAGGTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTCTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTCTTAATTTTTATGTGCCATATTGGAGTATGACCATATTTCATTCACTATCTAAATGAATGTGATCTGTAATATGAATCGAGTTCATTGCGACTCTTCAATTTCTCTAGACTTTTTTGGAGTAAGAAAGAAAATGTTTTTTATGGGTGAATAAAATTTGCATTAATCAATAAAAACCTGGGGAATTTGCAATGATATATAATTAACTAAGAAATTAAAGGGCAGGAGACTTTTAATTCTACATTACATAAATAAAATACAATATAGGAGAAAATGATCATTCAACTTTGAAGTTTGGAGCTTCTCACTTTTGATATAAAATAATATAATATGAATATGATATAATTACATAGGCGCAAAACTATTTGTCATTTTAAATTATGCTAAGCTAGCTGAATGCTACAAAAAATAATACAGATCTCTATTATTACATAACTGTTAGACATAAAACATATAGGAGGGGGTTCAAGAATTCTTGAACAATCATCATCTCATCTCGTCGGATTTGAATCATCATCTCATTTGAGAGGCAGCAGCACTAGAAACTGCTGCATAGGGGCAGAGCATTTTCCTCCTCTCTTTCCTTTTAATAACCTGTAGCTTGGGGGAGCTTGGTCTTGTGACATGTTTGGAAGACCTGTTGTTGTATACGGATAGACTTATATGTCGTCTTAGTATGAGGAAGACAAATAAAAGAAA</genome_strand>
        <mrna_strand>GCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG......................................................................................................................ATTTTACCTGAGAAGTATAACTATTATAAAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATG...........................................................................................................GTGACCCCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAAATGGATGGACATAAAAATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGACAAAAAAAATTACATAAAAAGTTTTCTGTATAAAAGTTGAGCACAAATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTTTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTTTTAATTTTTATGTGCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434979" ref_strand="+" ref_description="SGN-E434979 [STM-60-F6]">
      <seq>tatgcaatgaggcgcgaattatcagtactttacagccgtttctatgggatccttttaggcggcctattgttcatgtatgagtttcacaagtttctgcgccctattcttctacttttacactcattctggatacctcaaattgtaactaatgtcattcgcgactcaagaaaaccgttgcatcctcattacatcttgggaatgactctaactcgtttggcaattccattatatgtatttggctgtcctcacaatttcatgcgtatagaacctgataagaattggtgtatctgcttgggagtttttattgcgctgcaggcatcaattcttctgttgcagcattaccttggatctcggtggttcattccacgtcagattttacccgagaagtataactattttcgaaggtttgatcagagtgcaaatcacaccactgactgtgttatttgcatgactactattgatcatactcaacgctcaaataattgcatggtgacaccttgtgatcatttctttcactccggttgtttgcaaagatggatggacataaagatggagtgtccaacatgccgacgtcctcttccaccagcttgaataaatgctatttcttgaattcatcttgatagagcaactgacattgcccgacctgtttagaaaggttggagactcggagaattacataagaagttttctgtataaaagtacagcacagattcaccagacttgcggtgcagttgccgtttaatgacattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="63049" stop="60193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62750" g_stop="62708" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62707" i_stop="62014" i_length="694">
            <donor d_prob="0.574" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62013" g_stop="61685" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="372" r_length="329" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61566" g_stop="61450" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="489" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.252" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61342" g_stop="61177" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="655" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61176" i_stop="60590" i_length="587">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.744" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60589" g_stop="60520" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="725" r_length="70" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E434979" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62750" e_stop="62708"/>
          <exon e_start="62013" e_stop="61685"/>
          <exon e_start="61566" e_stop="61450"/>
          <exon e_start="61342" e_stop="61177"/>
          <exon e_start="60589" e_stop="60520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATGAGGCGTGAATTGTCAGTACTTTACAGCCGTTTCTGTAAGTATCTTTTACTTGAGGTGGACTTGTACCGAAAAAGTCAACAGAATCAGCAAGTGAATAGTTGCTTACGACACATGCCTATATTACCAATATGCAGGCTGCTATTGAAAGGGTAGTTAGATGTTAAAATCAAATAATTTATCTGAGTTTACTGTTTCCAAGTCTTTCTTTGTTCAATTTTGCTTGTGGACATGCTAATGAATTAATCACTTTATTCTACCTATTTTCCCCAATTTTTGTTTGGGGTATCTAAAGGCTGTTATTCAGTATCTATAATTATTTACTTAATTGAAAAAAACAAAAACTGGGCTACACAATTTGGGAACTTTTGATATAACAGAATGATCCTGAGAAGTCTTCAGTGTCTGAACTGTAGAAAAGAAAGCAACAAGGGAAAAATAACAGTGTTCAACATAGAACGAGCTTTGCTCTTAGACAGGCTCCAAAGAAAATGCAATTGGTATCTACTTGGCAAATCATATAGAAAATCTAAATTATACTATTTAAGCAGGAGTATTATGCCGTTATGCCATTCTAACATCACTTAACATAGTGGACTAAAGTTCTTCATTTCCACCGGGTCAATTCAATGTCTTTCTCCTTTCAAAGTTGGGCCACTTCTGTTGCATTAGCAATTAGTCATAAATAATCTGCTTACATTTACCTTTTCTTTTTTCTGAATCTTTTGCAGATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTGTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTCATTACATCTTGGGAATGACTATTACGCGTTTGGCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGGTTTGATACTGCTTTCAGTTAAAATTCTTGAAAGGATTATTTGTTGAAAGCAGAAAAAAACTGAATAATTAGTGCTTCCATCTGTCTTATGTAAGTAAGCTTTATTGTGGTGTTGCAGATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTAACTATAAAAGAAAAATGCTCTAGCTTAATTTAGTGTTCCTATTAGAATGCGATTTTAACTCCAAAAAAAAATACACAGTTAGTAATTGGCCTAATGATGTTCAGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAGGTAAACGGCTTTACTTGAAGTTTATATTTGAACAAGTGAGTACAAATTCAGCAATAGTTCATAGTGATTTTACTTTTAATAATGCTGTTGTTTAAACTGTCTGCCTTGTAGCTTGCCATTGTCCGAGTAAAGACTACGGGTGTGGAGGAAAACATTTTCCGCAAAATGTTCTATAGTTCTCATGTTCGGTTGGTCAAAATTTTGGAAAATATTTTCTATAGGAAAACAAGCTCAATTTTGGAACACAGAAGTTGCCAGTCCAAATTGACTGTTTCCTCTCCACCCTCCAGGACCTCATTTTCACCCCATCTCCACCACGTCACGCTCCTACCTCCACACCCTCACCTCCAATAGTACTTATCTAGATTATCTACAAATGCTTTTAGGATAATATTTTTTTGCTTGCATTCTGAACACAGCAAGAAAATAAGTATGTAACTCATTGGTTTTCTTGGAAAATATTTTCGTTCCTTCAGAACCTGCCTTACGGCATGATAGATTTCCTTGTAAATAGATGTCTGAAGGTCGTTTTTCTGGCTATGATCCAGAAGGAAAAATGTTTGACAAGGCTTCATTCTCTCTTTCAGGTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCACTAGACTTGCT</genome_strand>
        <mrna_strand>TATGCAATGAGGCGCGAATTATCAGTACTTTACAGCCGTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATCCTTTTAGGCGGCCTATTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGATACCTCAAATTGTAACTAATGTCATTCGCGACTCAAGAAAACCGTTGCATCCTCATTACATCTTGGGAATGACTCTAACTCGTTTGGCAATTCCATTATATGTATTTGGCTGTCCTCACAATTTCATGCGTATAGAACCTGATAAGAATTGGTGTATCTGCTTGGGAGTTTTTATTGCGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG......................................................................................................................ATTTTACCCGAGAAGTATAACTATTTTCGAAGGTTTGATCAGAGTGCAAATCACACCACTGACTGTGTTATTTGCATGACTACTATTGATCATACTCAACGCTCAAATAATTGCATG...........................................................................................................GTGACACCTTGTGATCATTTCTTTCACTCCGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCAGCTTGAATAAATGCTATTTCTTGAATTCATCTTGATAGAGCAACTGACATTGCCCGACCTGTTTAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGACTCGGAGAATTACATAAGAAGTTTTCTGTATAAAAGTACAGCACAGATTCACCAGACTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405261" ref_strand="+" ref_description="SGN-E405261 [PPC-17-M3]">
      <seq>gcaatgaggcgcgaattatcagtactttacagccgtttctatgggatccttttaggcggcctattgttcatgtatgagtttcacaagtttctgcgccctattcttctacttttacactcattctggatacctcaaattgtaactaatgtcattcgcgactcaagaaaaccgttgcatcctcattacatcttgggaatgactctaactcgtttggcaattccattatatgtatttggctgtcctcacaatttcatgcgtatagaacctgataagaattggtgtatctgcttgggagtttttattgcgctgcaggcatcaattcttctgttgcagcattaccttggatctcggtggttcattccacgtcagattttacccgagaagtataactattttcgaaggtttgatcagagtgcaaatcacaccactgactgtgttatttgcatgactactattgatcatactcaacgctcaaataattgcatggtgacaccttgtgatcatttctttcactccggttgtttgcaaagatggatggacataaagatggagtgtccaacatgccgacgtcctcttccaccagcttgaataaatgctatttcntgaattcatcttgatagagcaactgacattgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="63047" stop="60891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62747" g_stop="62708" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62707" i_stop="62014" i_length="694">
            <donor d_prob="0.574" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62013" g_stop="61685" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="369" r_length="329" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61566" g_stop="61450" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="486" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.252" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61342" g_stop="61191" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="638" r_length="152" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E405261" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62747" e_stop="62708"/>
          <exon e_start="62013" e_stop="61685"/>
          <exon e_start="61566" e_stop="61450"/>
          <exon e_start="61342" e_stop="61191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGAGGCGTGAATTGTCAGTACTTTACAGCCGTTTCTGTAAGTATCTTTTACTTGAGGTGGACTTGTACCGAAAAAGTCAACAGAATCAGCAAGTGAATAGTTGCTTACGACACATGCCTATATTACCAATATGCAGGCTGCTATTGAAAGGGTAGTTAGATGTTAAAATCAAATAATTTATCTGAGTTTACTGTTTCCAAGTCTTTCTTTGTTCAATTTTGCTTGTGGACATGCTAATGAATTAATCACTTTATTCTACCTATTTTCCCCAATTTTTGTTTGGGGTATCTAAAGGCTGTTATTCAGTATCTATAATTATTTACTTAATTGAAAAAAACAAAAACTGGGCTACACAATTTGGGAACTTTTGATATAACAGAATGATCCTGAGAAGTCTTCAGTGTCTGAACTGTAGAAAAGAAAGCAACAAGGGAAAAATAACAGTGTTCAACATAGAACGAGCTTTGCTCTTAGACAGGCTCCAAAGAAAATGCAATTGGTATCTACTTGGCAAATCATATAGAAAATCTAAATTATACTATTTAAGCAGGAGTATTATGCCGTTATGCCATTCTAACATCACTTAACATAGTGGACTAAAGTTCTTCATTTCCACCGGGTCAATTCAATGTCTTTCTCCTTTCAAAGTTGGGCCACTTCTGTTGCATTAGCAATTAGTCATAAATAATCTGCTTACATTTACCTTTTCTTTTTTCTGAATCTTTTGCAGATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTGTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTCATTACATCTTGGGAATGACTATTACGCGTTTGGCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGGTTTGATACTGCTTTCAGTTAAAATTCTTGAAAGGATTATTTGTTGAAAGCAGAAAAAAACTGAATAATTAGTGCTTCCATCTGTCTTATGTAAGTAAGCTTTATTGTGGTGTTGCAGATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTAACTATAAAAGAAAAATGCTCTAGCTTAATTTAGTGTTCCTATTAGAATGCGATTTTAACTCCAAAAAAAAATACACAGTTAGTAATTGGCCTAATGATGTTCAGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCG</genome_strand>
        <mrna_strand>GCAATGAGGCGCGAATTATCAGTACTTTACAGCCGTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATCCTTTTAGGCGGCCTATTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGATACCTCAAATTGTAACTAATGTCATTCGCGACTCAAGAAAACCGTTGCATCCTCATTACATCTTGGGAATGACTCTAACTCGTTTGGCAATTCCATTATATGTATTTGGCTGTCCTCACAATTTCATGCGTATAGAACCTGATAAGAATTGGTGTATCTGCTTGGGAGTTTTTATTGCGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG......................................................................................................................ATTTTACCCGAGAAGTATAACTATTTTCGAAGGTTTGATCAGAGTGCAAATCACACCACTGACTGTGTTATTTGCATGACTACTATTGATCATACTCAACGCTCAAATAATTGCATG...........................................................................................................GTGACACCTTGTGATCATTTCTTTCACTCCGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCAGCTTGAATAAATGCTATTTCNTGAATTCATCTTGATAGAGCAACTGACATTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460969" ref_strand="+" ref_description="SGN-E460969 [cPRO-33-N6]">
      <seq>cgtgtctcatcatcctcaaatgatggagctcgtgatcattatcaactagaaggattgatagagagcccttcagtggatgctgacggagactgtttctcaccgatgcttttgaatgctacttctgtcaatatagaggtttactacaacaaagcggtgaactacacattgatggtcacatttatatcttttctgcaagtgctccttctgattcgacaaatggaacatagcaacacccaatcaggagctgccaaagtttcaattctgatgattggacaacaggctatcatggattcttatctttgtcttttgcatctgaccgcagggatacttgttgaatcccttttcaatgcttttgcaactgctgccttcttcaagtttgttgtcttctcgatatttgagatgagatatctacttgctatatggaaggcaaataggcccatgaatagcggagagggttgggaagcaatgaggcgcgaattatcagtactttacagccgtttctaatgatcctgagaaggcttcagtgtctgaaatgcagaaaagaaagcaacaagggaaaagtaacagtgtcactagcgagaagcttcccttggaattgttttcccaggcaattttccttttttagttccaagaaagcagccgggatgggatccttttaggcggcctattgttcatgtatgagtttcacaagtttctgcgccctattcttctacttttacactcattctggatacctcaaattgtaactaatgtcattcgcgactcaagaaaaccgttgcatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="64124" stop="61573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63818" g_stop="63661" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="180" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63660" i_stop="63573" i_length="88">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63572" g_stop="63513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="240" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63512" i_stop="63437" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63436" g_stop="63343" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="334" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63342" i_stop="62876" i_length="467">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62875" g_stop="62708" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="502" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62707" i_stop="62365" i_length="343">
            <donor d_prob="0.574" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62364" g_stop="62252" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="612" r_length="110" r_score="0.761"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62251" i_stop="62045" i_length="207">
            <donor d_prob="0.338" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62044" g_stop="61873" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="785" r_length="173" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E460969" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63818" e_stop="63661"/>
          <exon e_start="63572" e_stop="63513"/>
          <exon e_start="63436" e_stop="63343"/>
          <exon e_start="62875" e_stop="62708"/>
          <exon e_start="62364" e_stop="62252"/>
          <exon e_start="62044" e_stop="61873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTTGTATCCTACAACACTTCTCATTTTTATTCATATCATTTTTGTAACAGATATCGCTTTGTCTGGATTCTTTAACTTCCTGATCCACCAGATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCAGTAGGACTACCTCTCTCTCTCTCCTCCCCCCCGTCTCTTATAAAGACTAGAGTGACATGTGATATCATTTTTCTAGGGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGGGATACTTGTTGGTAAGTGATAAGTGCTGTTGCCTTAGTAATCCCAGCTAGTACATATTCATTTACTGAGTTCTCTGCAAGTTAATCATACCTTGTGATCAGTTTTTAGTTTGATTTTATATGGAACATTGAGGTAGCATCTAGCATTATACGTTTATACATGAACATTATTAGGATCATGTTAACAACATTCTTCTGCTTTGTCACTTTTAGAAGTAGCACTGTTAGAAGTTTATGTCGACAGTTCTTCAAAAGAATTTTACATTCTTAGCATGTACACTATTTTCTGGTAGCAAACTTATGTTGTTGAATATTGTTAATGAAGCAAGCCCTACACTGGGTCTCAAGTATTACTTTTATGTAATTTTTCTGTTCAGATCTATTCATTTCTTGCTCTCGATTAATCAGTGTTTGAAGTAAAAGCTGGTCACGTCTTTCTTGGCGCTGTTCATCCTTCCCTTCCTTTCATTCTTTTGCAGAATCCCTTTTCAATGCTTTTGCAACTGCTGCATTCTTCAAGTTTGTTGTGTTCTCGATCTTTGAGATGAGATATCTACTTGCTATATGGAAGGCAAATAGGCCCATGAATAGCGTAGAGGGTTGGGAAGCAATGAGGCGTGAATTGTCAGTACTTTACAGCCGTTTCTGTAAGTATCTTTTACTTGAGGTGGACTTGTACCGAAAAAGTCAACAGAATCAGCAAGTGAATAGTTGCTTACGACACATGCCTATATTACCAATATGCAGGCTGCTATTGAAAGGGTAGTTAGATGTTAAAATCAAATAATTTATCTGAGTTTACTGTTTCCAAGTCTTTCTTTGTTCAATTTTGCTTGTGGACATGCTAATGAATTAATCACTTTATTCTACCTATTTTCCCCAATTTTTGTTTGGGGTATCTAAAGGCTGTTATTCAGTATCTATAATTATTTACTTAATTGAAAAAAACAAAAACTGGGCTACACAATTTGGGAACTTTTGATATAACAGAATGATCCTGAGAAGTCTTCAGTGTCTGAACTGTAGAAAAGAAAGCAACAAGGGAAAAATAACAGTGTTCAACATAGAACGAGCTTTGCTCTTAGACAGGCTCCAAAGAAAATGCAATTGGTATCTACTTGGCAAATCATATAGAAAATCTAAATTATACTATTTAAGCAGGAGTATTATGCCGTTATGCCATTCTAACATCACTTAACATAGTGGACTAAAGTTCTTCATTTCCACCGGGTCAATTCAATGTCTTTCTCCTTTCAAAGTTGGGCCACTTCTGTTGCATTAGCAATTAGTCATAAATAATCTGCTTACATTTACCTTTTCTTTTTTC-TGAATCTTTTGCAGATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTGTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTC</genome_strand>
        <mrna_strand>ATGGAGCTCGTGATCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGAGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT........................................................................................ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA............................................................................GGAGCTGCCAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATTCTTATCTTTGTCTTTTGCATCTGACCGCAGGGATACTTGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCTTTTCAATGCTTTTGCAACTGCTGCCTTCTTCAAGTTTGTTGTCTTCTCGATATTTGAGATGAGATATCTACTTGCTATATGGAAGGCAAATAGGCCCATGAATAGCGGAGAGGGTTGGGAAGCAATGAGGCGCGAATTATCAGTACTTTACAGCCGTTTCT.......................................................................................................................................................................................................................................................................................................................................................AATGATCCTGAGAAGGCTTCAGTGTCTGAAATGCAGAAAAGAAAGCAACAAGGGAAAAGTAACAGTG-TCACTAGCG-AGAAGCTTCCCT-TGGAATTGTTTTCCCAGGCAAT...............................................................................................................................................................................................................TTTCCTTTTTTAGTTCCAAGAAAGCAGCCGGGATGGGATCCTTTTAGGCGGCCTATTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGATACCTCAAATTGTAACTAATGTCATTCGCGACTCAAGAAAACCGTTGCATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332182" ref_strand="+" ref_description="SGN-E332182 [cTOD-16-D16]">
      <seq>aacaaatagctcttccaggtttcctgattttaggaagtccaatggcaactcggtccttgaattgataagtaatccaacaaaaataactggtgtacattatattcagggtgcaataattttccatgatgtgtttgacaatgaacatggagttggtgctgcacaaataagggtagaaggtgtatatatatggccatttagacaacttcgaatggtagcttacagtggcaaagatggtgagtttggacaggaagacgattatctattatcaaatccatatcacttgcttggagttttctcgtcccagatattccaggagtcttctcgagataagatttggaaaaagaaacactcaccgttttacgagatggagaaaaattgtaatatagaaattgctgcacaaattgctcgtgtctcatcctcctcaaatgatgcagctcgtgaccattatcaactagaaggattgatagagagcccttcagtggatgctgacggggactgtttctcaccgatgcttttgaatgctacttctgtcaatatagaggtttactacaacaaagcggtgaactacacattgatggtcacatttatatcttttctgcaagtgctccttctgattcgacaaatggaacatagcaacacccaatcangagctgcgaaagtttcaattctgatgattggacaacangctatcatggatgcttatctttgtcttttgcatctgaccgcaggnnatactgntgaaatccttttaatgcttttgcactgctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="67557" stop="63054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67257" g_stop="67152" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67151" i_stop="66217" i_length="935">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66216" g_stop="66101" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="222" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65671" i_length="430">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65670" g_stop="65610" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65609" i_stop="64667" i_length="943">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64666" g_stop="64600" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="350" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64599" i_stop="64518" i_length="82">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64517" g_stop="64440" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64439" i_stop="63819" i_length="621">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63818" g_stop="63661" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="586" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63660" i_stop="63573" i_length="88">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63572" g_stop="63513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="646" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63512" i_stop="63437" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63436" g_stop="63343" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="740" r_length="94" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E332182" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67257" e_stop="67152"/>
          <exon e_start="66216" e_stop="66101"/>
          <exon e_start="65670" e_stop="65610"/>
          <exon e_start="64666" e_stop="64600"/>
          <exon e_start="64517" e_stop="64440"/>
          <exon e_start="63818" e_stop="63661"/>
          <exon e_start="63572" e_stop="63513"/>
          <exon e_start="63436" e_stop="63343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAGGTAATCCTGTCATCATTAAATAAGTGAATTTCTTTATGAAATGCTATGTTAACTCCCTGTTCTCTGCACAAGTACTTGTCTCAAACTTATTAATTGTCTATGTCATGTCCCAATAGAGAACAATGTGCAGAAAGTTAAACTAAACTGCATTTTACTTTTAGTCTTTTGGTGTAATCAGTTATACTCTAATGACACTATCTCTATTATTGATGTGTTAGACTCAATTTAGACGTAGAGAAGTGAAATCAGGAGTACACTTGTATATAAGGTTACAGTAGGAGCCTTGTACTGTTTTGTGATATAATACGAAGTTACCAAGTTTAAAAAAAAATGTCATGTGCCCCAATAGGGTTTTTGAATTTTAAATTGATGACTGGGTAGTTTACTTCTCTTTCTATATCGAGAGAGCATCTATCATAAGTCATATCTAGACTTGCAGCATGCCATGCTTGTTTTATTGGACTTTACTTTGCTTTTCTAATAAAGCATGATGTTTCCAAACAGAAGTTGCAAACTTTATGTTTGTAGAAAACATATTTTTTGTAAGGTTTTCTATTTTTGGTATACATCTTGTGTAGTGGTGAGTTTTTCCCTTTATTAAAAAGATCTTATTTTTCTACAATATCTTTTGTCAAAAATCAAACTTAACATTTATCCATAATCATATGGTAAATGTGAAAAATTGCATGTTCCTCATGAAGGCGCTAATCAATGATAGCATAGGTCCAGGCATGAATGATATTAGACATTTATGCAATTAGTAAGTTTTAGTTAGTTTTTGTTTCATTTTTAGGAAGTTCCTCCAAACCCCCTTCGGCGTAAGATTACACTGTTTATTAGGCATTTCATCTTTCTTAGATGATGATACTTTCGGATGCAGAAATTGTACATTTCTATGGTTTAATCTTTAGTTGATCTCATTTTCCAAACAACAGGGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAGGTACTAGTTCTTATTTGGTACCTAAGCTGAAAGGAAATTTGTAACACCGTCGTAGGAAATTTCTAGCTTACAGGTACTGGTTCTTAAGATGCTACGGTCCTTTAATTCTGCCGAATGATTCAAAATGGTATTTATAATATAAGAGAATGGATGTCTAGGATGGGTGTCTTTGCTGAGTTTCAAGCACTCTTTAAGTAATTCATGCCAGAAATTTACATTTGTTACAATAGTTGCTAAAGTCCTTATCTCATGCTTAAGAATTCCAATTTAAAGTTTTTTTTTTCCGGGAATTGTCATTCAAATTGCTAAATCTTGTGTTCTTCAGAAAATGGAATTGAAATTTTAGATATTGGTTCCACATCACTTAACATTCCTGCAGATGCTACTGTCATGTGCTTTGTCAACTCATAGTTCTGCTTTTAATTTGCAGTGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTGGTATTAATTACAACAATATGTCATTTGTCCTCAGCATGGATTATTGAGTATAGCTTTTACATGACTCCTGATGATCATCTGTTACAATGAGTTCTGCTGCTGCTTGAATCACTTGACATACTTTAATTTCTTCAGCAGTGTTACATGCTTTATATTTGAAGAGCATAATGCTTGAATACCATTAAGAATTTGACATGCTTTGACTTTTATATATGATATTTTGGTAATGGTATAACAAATTTCAAAACTTTTCTCTTTTGCTTTCTTAGGGCTCCGTTTGTCTACTGTATGTCTCTTTCTTTAAATTAATTTGCCGGGAGTAGCTTTTTATTAACATTTGAAACTTTAGCACATGTTTGGATACTCATAAGTAGAATTCCCTTTCAAAGTGGAGATGATGAGTGGGGATTATGAATGCTATTCATACCTTTTCTGATGGGTTTCCTTTCCCCCTATCCTTTCCTATTCCCTTCCTTTTTTGTTGTTTCAAAAAGGTTTTTGTGTATTCCATTCTTCCAGTGGTAAGAGATTCACATGTTGAAGAAAAATGACCATTATATCTGGATAGCCTTCTTTTTTCTTTTTCTCCATTTTACCTTGTAAGAAAATATATGCTTTTGCAGTCCGGTTTAGCTTCTTCGTAATCAAAATAGCTTAAAATGAGGGCTGCTCTTAATCTTTGTTCTTCCACAGCGGCAGCTAATTACCATCAGATATCTCATATTCTATGGTAATCAAATTGAAATTATTCGGAAATGATAAAAAGGAGGCTCTTTATGAGGAATTTCTTGTGTTCCGTGATGGCTATAATGTTTACTTTAGATGTACATCCCTTTCATGTGACAATAATATGTACATCCCTTTCACGTGACAATAATTCGAGTTTAAGACTTTATCAAGATTTAAGGCATTGAAAAATGACTTGCTTTGTCTTTGTTGACAGCTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACTGTAATAATTTATTTTTTTCAACAGTTATCCAGTTTAATGTTTTAGCTCCTAAGCTAACTTATGTATCTTTTTGTTTCTGCAGCACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATGGTACTTGGCTTTCTTATTTACCTTTCACCTTTGATACGACTCAAGCATCAAGAGGGACTTTCTTCTCTGGTTCATTTGGCTTTCATATATGCTTCCGAATTCATTTATTTCATGAACTCTGTTTTATATAATTTTTACTCCAATGATCATCAAGTAAGGATTTTTTAAATAAGGTTAGGTCAATCATTAAGAAAGGATTTTTGTCATTACTCTTTCAGTTCTCGGGTATTTTAGCTTTTGAGGCCTATAAATGTTCTAAAGTCAATTTGACAAGATCACCCTGCATTATATATGCAAAATGCATTATGTTACCTAAAGCTACTTCTTTCATATTCGTTCAGGATCTTCATATGCTTTTCTGCAGCTTAGTGTATCATGATGCAGTTTGCCCTAACAGAGAGAGTGCTGATACCATGTTAAGAAATGGATCTTGAGCCTAACTCAATCCCAAAATCTAGATCAAGAGTGTTATATTAAGAGACCACCCATTCCCTTCACCACAATATGGGACTTCTTCACATTTTCTTTGTTCCATTTTAATGCATATCTTGATTCAGTATTCAACTTATCCATAAGTTTGTGCAAAATATCAGGAACAAGTGATTTATTTTCCTTTCTCAGATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTTGTATCCTACAACACTTCTCATTTTTATTCATATCATTTTTGTAACAGATATCGCTTTGTCTGGATTCTTTAACTTCCTGATCCACCAGATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCAGTAGGACTACCTCTCTCTCTCTCCTCCCCCCCGTCTCTTATAAAGACTAGAGTGACATGTGATATCATTTTTCTAGGGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGG-GATACTTGTTG</genome_strand>
        <mrna_strand>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACT..................................................................................CACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT........................................................................................ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA............................................................................NGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACANGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGGNNATAC-TGNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475405" ref_strand="+" ref_description="SGN-E475405 [cSTB-38-N12]">
      <seq>tgatctttagcttatttttactttctgcgaaactgaaaacaccccaactatgttatttatagattgtataactgttttagaataaagaaatacaagtggagttttctaagttgttggttcttgaattgactagggaagggattcttggtgaatcacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctctgaagttgatttttgttgttggggttgttgttttacgttgtttgacttcaatttaagcaacccctttttctttctttctcttaaagttctctttttttcaatttttgaaattgtaactgtaatgggttttgtttcttcatctgggttgctcaagaattgcttgaaagtgaagaatttgaattgatcttgaaatgggtatggcaaaaagattgtattttttgaggttgaagaggagaaattatggagttttgtttagagttctttttagtttatggttcatccttggagggatttgcccagtaatgggtgtcaggcctctcagagaaagatatcgttcgtggggagatgagtggcttcttgtaagaaaggatgagaatgaattggggcctttttctgcttggaatataactggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="69548" stop="67261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69262" g_stop="68720" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67629" g_stop="67561" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="623" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E475405" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69262" e_stop="68720"/>
          <exon e_start="67629" e_stop="67561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCT--G--GTT-G-T--TGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCC-TTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTT---TTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAA-TGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGGTTAGTATTGGAGTTACATTTTGTATCTGCACTTCCTTGTGTAATTTGTGCCTTCTAAGGATCAATTATCTGGTATTGGAGTGAAATTGGTCCAACTAGTGGAAAGAGTACAGCCTAACAGCTCAATGGAGTATGTGACAGTAAAGATTGCTACTTTAATTTTGAATTATGTATTATTTGTTGTTGCTATTGTTCTGTTCCCCAGTATTGTTACTTTACATACTTATTGTTTGTTATGCTTTACTTGAGCTGAGGGTCTACCGGATACAACCTCTTTGCCTTCACAAGGGAGTAGGGGTAAGGTTGCGTAAGATCATCCTCCCCAAACATAACTTGTGGGATTACAATGGGTTTGTTGTTATTGTATTAAAAACTGAAACTTTACTCATTCAAGTGCTCAAGTGATGAAGTGCAACTTGTGTTAGCTAGCTGGTGAAAGGAATTCCAAGCTATTTGCTTAACCTGTATCTGATAGGTTTAGTGCTTCATACTTTATACATCTTACTAAACACAAGTCAGTTTATCATGCATAAGAGCAATGATGGATTTATATTTTGGACATTGTACAATGAGGAGATATGGCAATGAAATGATATAACTAGCAAGAAATAATATGCTTTTATGTGTCCCCTTTTTTAATAAGGAACTTGCTCTTATGAATATACTTCATTATCGTGAGAAAACACTGAATAAGGTAGGATTTTCTAAGGACTGTTTCATGTTTATGCCTAGAGCCAAGATATCTGTCACTCCAATCAATGCTGGACACCGAAAAGAAAATCAGGGATGACGAAATGGCTGGATAAGTTCAGTTAATGAGATATGAAAATATTACTGGATAATTCAGTAAATGAGGTATGAAATTATTCTAACACCTAGTTAAGACTGGATATCAAAAGTTCACTAGGAAACTGTATTGAATCAAGTTCGACGCTAGCTATATTTGGTTTCTTGGTGATTAAGATCAAGGTTACTATCCTAATTCAGTTATAACTTCTTGGAGCTCATTGCTAGAATTGGATAAGTCATGTTATGTGTTCTCCCTGCTGTTCATGCCTAACCATTAATTATATCCTTATTGTTGTTGCAGTGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</genome_strand>
        <mrna_strand>TGATCTTTAGCTTATTT--TTACTTTCTGCGAAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAACTGTTTTAGAATAAAGAAATACAAGTGGAGTTTTCTAAGTTGTTGGTTCTTGAATTGACTAGGGAAGGGATTCTTGGTGAATCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTCTGAAGTTGATTTTTGTTGTTGGGGTTGTTGTTTTACGTTGTTTGACTTCAATTTAAGCAACCCCTTTTTCTTTCTTTCTCTTAAAGTTCTCTTTTTTTCAATTTTTGAAATTGTAACTGTAATGGGTTTTGTTTCTTCATCTGGGTTGCTCAAGAATTGCTTGAAAGTGAAGAATTTGAATTGATCTTGAAATGGGTATGGCAAAAAGATTGTATTTTTTGAGGTTGAAGAGGAGAAATTATGGAGTTTTGTTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGGAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATATCGTTCGTGGGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCTTGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACTGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289062" ref_strand="+" ref_description="SGN-E289062 [cLES-18-K17]">
      <seq>agattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttgcccagtaatgggtgtcaggcctctcagagaaagataccgttcgtggggagatgagtggcttcgggtaagaaaggatgagaatgaattggggcctttttctgcttggaatataacaggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="69500" stop="67261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69200" g_stop="68720" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67629" g_stop="67561" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="550" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E289062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69200" e_stop="68720"/>
          <exon e_start="67629" e_stop="67561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGGTTAGTATTGGAGTTACATTTTGTATCTGCACTTCCTTGTGTAATTTGTGCCTTCTAAGGATCAATTATCTGGTATTGGAGTGAAATTGGTCCAACTAGTGGAAAGAGTACAGCCTAACAGCTCAATGGAGTATGTGACAGTAAAGATTGCTACTTTAATTTTGAATTATGTATTATTTGTTGTTGCTATTGTTCTGTTCCCCAGTATTGTTACTTTACATACTTATTGTTTGTTATGCTTTACTTGAGCTGAGGGTCTACCGGATACAACCTCTTTGCCTTCACAAGGGAGTAGGGGTAAGGTTGCGTAAGATCATCCTCCCCAAACATAACTTGTGGGATTACAATGGGTTTGTTGTTATTGTATTAAAAACTGAAACTTTACTCATTCAAGTGCTCAAGTGATGAAGTGCAACTTGTGTTAGCTAGCTGGTGAAAGGAATTCCAAGCTATTTGCTTAACCTGTATCTGATAGGTTTAGTGCTTCATACTTTATACATCTTACTAAACACAAGTCAGTTTATCATGCATAAGAGCAATGATGGATTTATATTTTGGACATTGTACAATGAGGAGATATGGCAATGAAATGATATAACTAGCAAGAAATAATATGCTTTTATGTGTCCCCTTTTTTAATAAGGAACTTGCTCTTATGAATATACTTCATTATCGTGAGAAAACACTGAATAAGGTAGGATTTTCTAAGGACTGTTTCATGTTTATGCCTAGAGCCAAGATATCTGTCACTCCAATCAATGCTGGACACCGAAAAGAAAATCAGGGATGACGAAATGGCTGGATAAGTTCAGTTAATGAGATATGAAAATATTACTGGATAATTCAGTAAATGAGGTATGAAATTATTCTAACACCTAGTTAAGACTGGATATCAAAAGTTCACTAGGAAACTGTATTGAATCAAGTTCGACGCTAGCTATATTTGGTTTCTTGGTGATTAAGATCAAGGTTACTATCCTAATTCAGTTATAACTTCTTGGAGCTCATTGCTAGAATTGGATAAGTCATGTTATGTGTTCTCCCTGCTGTTCATGCCTAACCATTAATTATATCCTTATTGTTGTTGCAGTGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</genome_strand>
        <mrna_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373221" ref_strand="+" ref_description="SGN-E373221 [TUS-31-B17]">
      <seq>agattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttgcccagtaatgggtgtcaggcctctcagagaaagataccgttcgtggggagatgagtggcttcagataagagaggatgagaatgaattggggcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="69500" stop="67286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69200" g_stop="68720" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67629" g_stop="67586" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="525" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E373221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69200" e_stop="68720"/>
          <exon e_start="67629" e_stop="67586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGGTTAGTATTGGAGTTACATTTTGTATCTGCACTTCCTTGTGTAATTTGTGCCTTCTAAGGATCAATTATCTGGTATTGGAGTGAAATTGGTCCAACTAGTGGAAAGAGTACAGCCTAACAGCTCAATGGAGTATGTGACAGTAAAGATTGCTACTTTAATTTTGAATTATGTATTATTTGTTGTTGCTATTGTTCTGTTCCCCAGTATTGTTACTTTACATACTTATTGTTTGTTATGCTTTACTTGAGCTGAGGGTCTACCGGATACAACCTCTTTGCCTTCACAAGGGAGTAGGGGTAAGGTTGCGTAAGATCATCCTCCCCAAACATAACTTGTGGGATTACAATGGGTTTGTTGTTATTGTATTAAAAACTGAAACTTTACTCATTCAAGTGCTCAAGTGATGAAGTGCAACTTGTGTTAGCTAGCTGGTGAAAGGAATTCCAAGCTATTTGCTTAACCTGTATCTGATAGGTTTAGTGCTTCATACTTTATACATCTTACTAAACACAAGTCAGTTTATCATGCATAAGAGCAATGATGGATTTATATTTTGGACATTGTACAATGAGGAGATATGGCAATGAAATGATATAACTAGCAAGAAATAATATGCTTTTATGTGTCCCCTTTTTTAATAAGGAACTTGCTCTTATGAATATACTTCATTATCGTGAGAAAACACTGAATAAGGTAGGATTTTCTAAGGACTGTTTCATGTTTATGCCTAGAGCCAAGATATCTGTCACTCCAATCAATGCTGGACACCGAAAAGAAAATCAGGGATGACGAAATGGCTGGATAAGTTCAGTTAATGAGATATGAAAATATTACTGGATAATTCAGTAAATGAGGTATGAAATTATTCTAACACCTAGTTAAGACTGGATATCAAAAGTTCACTAGGAAACTGTATTGAATCAAGTTCGACGCTAGCTATATTTGGTTTCTTGGTGATTAAGATCAAGGTTACTATCCTAATTCAGTTATAACTTCTTGGAGCTCATTGCTAGAATTGGATAAGTCATGTTATGTGTTCTCCCTGCTGTTCATGCCTAACCATTAATTATATCCTTATTGTTGTTGCAGTGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTC</genome_strand>
        <mrna_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCAGATAAGAGAGGATGAGAATGAATTGGGGCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323518" ref_strand="+" ref_description="SGN-E323518 [cTOC-7-K18]">
      <seq>aatttaggagaagactaatgttaaatgatctttagcttatttttttactttctgcagaactgaaaacaccccaactatgttatttatagattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="69587" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69287" g_stop="68775" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E323518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69287" e_stop="68775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTG</genome_strand>
        <mrna_strand>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211451" ref_strand="+" ref_description="SGN-E211451 [cLEC-67-O24]">
      <seq>ttaaaaacactcatacaccatttcattttcattgttcgttggctgattaatttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgcagaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcaaatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccagggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtacaagcaagaattagatatcttgattcaaatcaaacacgacaacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtctcaaatggtactctacaggacaaactccacgaaaacagagataggacaattctttcgtggagaaaccgaatgggtgtggcatttcaacttgctcaagctattgagtatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="76912" stop="75604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76612" g_stop="75904" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E211451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76612" e_stop="75904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</genome_strand>
        <mrna_strand>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203603" ref_strand="+" ref_description="SGN-E203603 [cLEC-15-G12]">
      <seq>tttcattttcattgttcggtggctgattaatttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgtttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgccgaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcacatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccacggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtgcaagcaagaattagatatcttgattcaaatcaaacacgacgacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtctcaaaaggtactctacaggacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="76892" stop="75693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76592" g_stop="75993" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E203603" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76592" e_stop="75993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTG-TTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAA</genome_strand>
        <mrna_strand>TTTCATTTTCATTGTTCGGTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCCGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCACATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCACGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTGCAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACGACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAAAGGTACTCTACAGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212849" ref_strand="+" ref_description="SGN-E212849 [cLEC-73-K24]">
      <seq>tttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgcagaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcaaatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccagggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtacaagcaagaattagatatcttgattccaatcaaacacgacaacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="76862" stop="75717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76562" g_stop="76017" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E212849" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76562" e_stop="76017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTC</genome_strand>
        <mrna_strand>TTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCCAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231240" ref_strand="+" ref_description="SGN-E231240 [cLED-5-J3]">
      <seq>aaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcatttcctaagcttcaatttaggtaatattttcccaacaagagatacatcagctcttttcaactcagccgacgtagtaaatagagaagaaaatattgttgttaagagattcgttgttcgtgaagctgctctatcaaggctcaaaaaacaatgcattgatgaatcaggcggagctttgacttttcaaccttcaagggttgaaatagttacagcaatcctatggagggcttttatccgcgcttcagcagctagaaatgggtttgttagaccttctctaatggacttcccattgaatttacgctctaaatcatctntacctcaagtaaaaacctctatgggaaatttcagaatcgatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="85761" stop="84613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85461" g_stop="84913" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E231240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85461" e_stop="84913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTTTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</genome_strand>
        <mrna_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTNTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228088" ref_strand="+" ref_description="SGN-E228088 [cLED-2-H21]">
      <seq>aaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcatttcctaagcttcaatttaggtaatattttcccaacaagagatacatcagctcttttcaactcagccgacgtagtaaatagagaagaaaatattgttgttaagagattcgttgttcgtgaagctgctctatcaaggctcaaaaaacaatgcattgatgaatcaggcggagctttgacttttcaaccttcaagggttgaaatagttacagcaatcctatggagggcttttatccgcgcttcagcagctagaaatgggtttgttagaccttctctaatggacttcccattgaatttacgctctaaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="85761" stop="84661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85461" g_stop="84961" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E228088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85461" e_stop="84961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATC</genome_strand>
        <mrna_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701569" ref_strand="+" ref_description="SGN-E701569 [FA16BD07]">
      <seq>aggttttgttaacgaaaatgattgcataaaagttgaaatcttatgcaaaaagctcataaagccatcttcacctacaccctctcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcatttcctaagcttcaatttaggtaatattttcccaacaagagatacatcagctcttttcaactcagccgacgtagtaaatagagaagaaaatattgttgttaagagattcgttgttcgtgaagctgctctatcaaggctcaaaaaacaatgcattgatgaatcaagcggagctttgacttttcaaccttcaagggttgaaatagttacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="86154" stop="84760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85854" g_stop="85060" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E701569" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85854" e_stop="85060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGTTAACGAAAATGATTGCATAAAAGTTGAAATCTTATGCAAAAAGCTCATAAAGCCATCTTCACCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGC</genome_strand>
        <mrna_strand>AGGTTTTGTTAACGAAAATGATTGCATAAAAGTTGAAATCTTATGCAAAAAGCTCATAAAGCCATCTTCACCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAAGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324734" ref_strand="+" ref_description="SGN-E324734 [cTOC-8-F22]">
      <seq>acgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="86064" stop="84963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85764" g_stop="85263" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E324734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85764" e_stop="85263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTA</genome_strand>
        <mrna_strand>ACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238191" ref_strand="+" ref_description="SGN-E238191 [cLED-22-K9]">
      <seq>ccagcctacaccctctcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgttagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgctactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctatatcattcagtgtttcacaccctgcaatggacggtttcacaggtttgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="86086" stop="85024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85787" g_stop="85324" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E238191" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85787" e_stop="85324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATT</genome_strand>
        <mrna_strand>CCAGCCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTTAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCTACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTATATCATTCAGTGTTTCACACCCTGCAATGGACGGTTTCACAGGTTTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244797" ref_strand="+" ref_description="SGN-E244797 [cLED-38-P12]">
      <seq>gtacgcttggctatttattagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="85831" stop="85043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85531" g_stop="85343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E244797" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85531" e_stop="85343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATG</genome_strand>
        <mrna_strand>GTACGCTTGGCTATTTATTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240446" ref_strand="+" ref_description="SGN-E240446 [cLED-21-C3]">
      <seq>ccagcctacaccttttcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataatttttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="86086" stop="85045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85787" g_stop="85345" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E240446" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85787" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAA-TTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGA</genome_strand>
        <mrna_strand>CCAGCCTACACCTTTTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242524" ref_strand="+" ref_description="SGN-E242524 [cLED-30-M2]">
      <seq>ctacaccctctcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="86083" stop="85094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85783" g_stop="85394" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E242524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85783" e_stop="85394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTG</genome_strand>
        <mrna_strand>CTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258562" ref_strand="+" ref_description="SGN-E258562 [cLEG-47-L19]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaacttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="95990" stop="98006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96290" g_stop="97038" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="809" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E258562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96290" e_stop="97038"/>
          <exon e_start="97647" e_stop="97706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAACTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258594" ref_strand="+" ref_description="SGN-E258594 [cLEG-47-J20]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccnggaacagtggcattattggctggaatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="95990" stop="96804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96290" g_stop="96504" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E258594" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96290" e_stop="96504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACC-GGAACAGTGGCATTATT-GCTGGAATATTCAT</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCNGGAACAGTGGCATTATTGGCTGGAATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359238" ref_strand="+" ref_description="SGN-E359238 [cLHT-11-J14]">
      <seq>cagggtgtcaagatgtgttaagtgactagaatgagcctaatttaaattttaaattgtaaaaattttcaaactttattctatatgcgcttcacccgattagcgtatagcgatggtcgctgagtgactaccggaacagtggcattattgctggagtattcatcagctatgagaaaaaatgcaggctcttgtgtcatcaccaactagctgttacatcaattgaacaacaagaagaatatttatgcacaataatcaatatggcacctacaaagattaccccttttcttcttcaccaactaaatcacttggtttttcaagcagccatttgccttttcaatcactaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttatgggtagctttgggttgcttgattgggctgcttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96070" stop="97186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96371" g_stop="96886" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="542" r_length="515" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E359238" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96371" e_stop="96886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAAC-TTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAAC</genome_strand>
        <mrna_strand>A-GAATGAGCCTAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTTATTCTATATGCGCTTCA-CCCGATTAGCGTATAGCGATGGTCGCTGAGTGACTACCGGAACAGTGGCATTATTGCTGGAGTATTCATCAGCTATGAGAAAAAATGCAGGCTCTTGTGTCATCACCAACTAGCTGTTACATCAATTGAACAACAAGAAGAATATTTATGCACAATAATCAATATGGCACCTACAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTGGTTTTTCAAGCAGCCATTTGCCTTTTCAATCACTAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTATGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359116" ref_strand="+" ref_description="SGN-E359116 [cLHT-11-H22]">
      <seq>cagggtgtttagatgttttaagtgactagaatgagcctaaggtaaattttaaattgtaaaaattttcaccactttattctatatgcgcttcacccgattagcgtatagcgatggtcgctgagtgactaccggaacagtggcattattgctggagtattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatggcacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcagccatttgccttttcaatcactaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttttgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttatggggagctttgggttgcttgattgggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96070" stop="97180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96371" g_stop="96880" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="537" r_length="510" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E359116" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96371" e_stop="96880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCA-AACT-TATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGC</genome_strand>
        <mrna_strand>A-GAATGAGCCTAAGGTAAATTTTAAATTGTAAAAATTTTCACCACTTTATTCTATATGCGCTTCA-CCCGATTAGCGTATAGCGATGGTCGCTGAGTGACTACCGGAACAGTGGCATTATTGCTGGAGTATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGGCACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCAGCCATTTGCCTTTTCAATCACTAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTTTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTATGGGGAGCTTTGGGTTGCTTGATTGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315985" ref_strand="+" ref_description="SGN-E315985 [cTOA-23-E13]">
      <seq>aatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96074" stop="97280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96374" g_stop="96980" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E315985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96374" e_stop="96980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</genome_strand>
        <mrna_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487232" ref_strand="+" ref_description="SGN-E487232 [cSTE-24-L18]">
      <seq>cccttttctgattcttcttcttcttcttcttcttcatcacccactaaatcactttgtttctcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcaaaaacccatttcattaatacccagaggacagcttctgtgttcaaattcgtcaactgccattactactgatgacaacaagaataagagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcctttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcatacaattgggtcaaacctcaatggactgtgatgggtattacactaacgatgcttggcatgggaatgactcttacttttgatgaccttcgtggtgctttagccatgcctaaagagttgttctgcggttttgtgcttcagtactcggtgatgcctttatcaggatattttgttagtaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacagcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgctgtggtgatgactccttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="73761" stop="98324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96380" g_stop="96399" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.550"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96400" i_stop="96613" i_length="214">
            <donor d_prob="0.728" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96614" g_stop="97038" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="438" r_length="419" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="0.86"/>
            <acceptor a_prob="0.440" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="532" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="566" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="621" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E487232" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96380" e_stop="96399"/>
          <exon e_start="96614" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG</genome_strand>
        <mrna_strand>CCCTTTTCTGATTCT-TCTT......................................................................................................................................................................................................................CTTCTTCTTCTTCTTCATCACCCACTAAATCACTTTGTTTCTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCAAAAACCCATTTCATTAATACCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTA---CT-A--CTGATGACAACAAGAATAAGAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCTTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCATACAATTGGGTCAAACCTCAATGGACTGTGATGGGTATTACACTAACGATGCTTGGCATGGGAATGACTCTTACTTTTGATGACCTTCGTGGTGCTTTAGCCATGCCTAAAGAGTTGTTCTGCGGTTTTGTGCTTCAGTACTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCAGGATATTTTGTTAGTAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACAGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325144" ref_strand="+" ref_description="SGN-E325144 [cTOC-13-J1]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96137" stop="97302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="97002" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E325144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="97002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342843" ref_strand="+" ref_description="SGN-E342843 [cTOF-7-F8]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96137" stop="97278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="96978" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="96978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203575" ref_strand="+" ref_description="SGN-E203575 [cLEC-15-C5]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96137" stop="97020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="96720" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E203575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="96720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727037" ref_strand="+" ref_description="SGN-E727037 [LA13CB12]">
      <seq>ggtatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96194" stop="98306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96494" g_stop="97038" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="639" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="673" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="728" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E727037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96494" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG</genome_strand>
        <mrna_strand>GGTATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726043" ref_strand="+" ref_description="SGN-E726043 [LA10AE08]">
      <seq>ggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96194" stop="97315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96494" g_stop="97015" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E726043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96494" e_stop="97015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCT</genome_strand>
        <mrna_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412515" ref_strand="+" ref_description="SGN-E412515 [STM-16-K24]">
      <seq>caacagctaggggggaaaatgcaggctcttgtgtccgcaccaaatagctgttacatcaattacacaggaagacgaagatttatacacaataatcaatatcacacctccaagaattaccccttttcttcatcttcttcttcatcacccactagatcacttcatttctcaagcacccatttgccttttcaatcacaaaatcttattctgtatcaaaaacccatttcattaatacccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttagggattggatccaaagtgttggggaaacgatttcagttttgtttcctttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcatacaattgggtcaaacctcaatggactgtgatgggtattacactaacgatgcttggcatgggaatgactcttacttttgatgatcttcgtggtgctttagccatgcctaaagagttattctgcggtttcgtccttcagtattcggtgatgcctttatcaggatattttgttagcaagctattaaatttgccatcccattatgcagcangcttgatattggttggctgctgtcctggagggaccngcaagtacattgtcacttacattgcacgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96202" stop="98157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96502" g_stop="97038" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.440" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="643" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="677" r_length="34" r_score="0.882"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97952" g_stop="97958" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="684" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E412515" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96502" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="97958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTC-T--TCTTC-AC--CA--A-CTA--A-ATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGA-CGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAAT</genome_strand>
        <mrna_strand>CAACAGCTAGGGGGGAAAATGCAGGCTCTTGTGTCCGCACCAAATAGCTGTTACATCAATTACACAGGAAGACGAAGATTTATACACAATAATCAATATCACACCTCCAAGAATTACCCCTTTTCTTCATCTTCTTCTTCATCACCCACTAGATCACTTCATTTCTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTATTCTGTATCAAAAACCCATTTCATTAATACCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTAGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCAGTTTTGTTTCCTTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCATACAATTGGGTCAAACCTCAATGGACTGTGATGGGTATTACACTAACGATGCTTGGCATGGGAATGACTCTTACTTTTGATGATCTTCGTGGTGCTTTAGCCATGCCTAAAGAGTTATTCTGCGGTTTCGTCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCAGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCANGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACCNGCAAGT-ACATTGTCACTTACATTGCACG...................................................................................................TGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466364" ref_strand="+" ref_description="SGN-E466364 [cPRO-24-A21]">
      <seq>caacagctaggggaaaaaatgcaggctctcgtgtcagcaccttgtagctgttacatcaattacacaggaagacgaagatttatacacaataatcaatatcacacctctaagagttaccccttttcttcttcttcttcttcatcacccactaaatcactttatttctcaagctcccatttgccttttcaatcacaaaatcttgttctgtatcaaaaacccatttcattaatacccagcggacagcttctgtgttcaaattcatcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcctttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcatacaattgggtcaaacctcaatggactgtgatgggtattacactaacgatgcttggcatgggaatgactcttactttcgatgaccttcgtggtgctttagccatgcctaaagagttgttctgcggtttcgtccttcagtattcggtgatgcctttatcacgatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96202" stop="98039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96502" g_stop="97038" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.440" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97739" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="642" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E466364" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96502" e_stop="97038"/>
          <exon e_start="97647" e_stop="97739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCC--TT-TTCTTCTTC-AC--CA--A----CTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGA</genome_strand>
        <mrna_strand>CAACAGCTAGGGGAAAAAATGCAGGCTCTCGTGTCAGCACCTTGTAGCTGTTACATCAATTACACAGGAAGACGAAGATTTATACACAATAATCAATATCACACCTCTAAGAGTTACCCCTTTTCTTCTTCTTCTTCTTCATCACCCACTAAATCACTTTATTTCTCAAGCTCCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCAAAAACCCATTTCATTAATACCCAGCGGACAGCTTCTGTGTTCAAATTCATCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCTTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCATACAATTGGGTCAAACCTCAATGGACTGTGATGGGTATTACACTAACGATGCTTGGCATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCCATGCCTAAAGAGTTGTTCTGCGGTTTCGTCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCACGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207332" ref_strand="+" ref_description="SGN-E207332 [cLEC-30-N10]">
      <seq>aataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcccaaaaaaaggggggctattaaatttgccatcccattatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96289" stop="98009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96589" g_stop="97038" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97674" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="478" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E207332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96589" e_stop="97038"/>
          <exon e_start="97647" e_stop="97674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTA</genome_strand>
        <mrna_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286772" ref_strand="+" ref_description="SGN-E286772 [cLES-14-L10]">
      <seq>atcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96378" stop="99148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96678" g_stop="97038" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="455" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="544" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98799" g_stop="98848" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="594" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96678" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
          <exon e_start="98799" e_stop="98848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</genome_strand>
        <mrna_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201765" ref_strand="+" ref_description="SGN-E201765 [cLEC-11-M20]">
      <seq>ccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96407" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96707" g_stop="97038" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97838" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="446" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E201765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96707" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTC</genome_strand>
        <mrna_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693039" ref_strand="+" ref_description="SGN-E693039 [LH_Ea10E13]">
      <seq>tcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggtcaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgtcattcgatatttggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="96630" stop="99759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96929" g_stop="97038" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="204" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="238" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="293" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98799" g_stop="98882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="377" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98964" g_stop="99251" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="665" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99358" g_stop="99459" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="767" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E693039" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96929" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
          <exon e_start="98799" e_stop="98882"/>
          <exon e_start="98964" e_stop="99251"/>
          <exon e_start="99358" e_stop="99459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGT</genome_strand>
        <mrna_strand>TCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGTCAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGTCATTCGATATTTGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206802" ref_strand="+" ref_description="SGN-E206802 [cLEC-33-A21]">
      <seq>ttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctactcaaggacaatatctattgaagtcggaatgcaaaactcggttcttggagtagttctagccactcagcactttggtaatacacttactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="97341" stop="99714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97636" g_stop="97740" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="139" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="194" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98799" g_stop="98882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="278" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98964" g_stop="99251" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="566" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99358" g_stop="99414" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="623" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E206802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97636" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
          <exon e_start="98799" e_stop="98882"/>
          <exon e_start="98964" e_stop="99251"/>
          <exon e_start="99358" e_stop="99414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCA</genome_strand>
        <mrna_strand>TTCAGTATTCGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTACTCAAGGACAATATCTATTGAAGTCGGAATGCAA..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATACACTTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733480" ref_strand="+" ref_description="SGN-E733480 [LB10AE07]">
      <seq>gcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaacctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="97662" stop="100033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97962" g_stop="98006" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98799" g_stop="98882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98964" g_stop="99251" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="417" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99358" g_stop="99743" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="803" r_length="386" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E733480" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97962" e_stop="98006"/>
          <exon e_start="98799" e_stop="98882"/>
          <exon e_start="98964" e_stop="99251"/>
          <exon e_start="99358" e_stop="99743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCA</genome_strand>
        <mrna_strand>GCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAACCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711220" ref_strand="+" ref_description="SGN-E711220 [FB01BD08]">
      <seq>gaggcgttttgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagcaaaacctataaacatcttgatcattggcaggaatttacctgcatctgatatctaattcttgttctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="98500" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98799" g_stop="98882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="92" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98964" g_stop="99251" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="380" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99358" g_stop="99770" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="793" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E711220" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98799" e_stop="98882"/>
          <exon e_start="98964" e_stop="99251"/>
          <exon e_start="99358" e_stop="99770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</genome_strand>
        <mrna_strand>TTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGCAAAACCTATAAACATCTTGATCATTGGCAGGAATTTACCTGCATCTGATATCTAATTCTTGTTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715612" ref_strand="+" ref_description="SGN-E715612 [FB14DB05]">
      <seq>gttgtagcaactgttgactgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcataactgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagatgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtatttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcaatatttggcagtgccttggctgacatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcatcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttctgtaaaacaaattcccccaaaaaaaagccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="98754" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99054" g_stop="99251" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99358" g_stop="99767" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="609" r_length="410" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E715612" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99054" e_stop="99251"/>
          <exon e_start="99358" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGCAACTGTTG-CTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>GTTGTAGCAACTGTTGACTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAACTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGATGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTATTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCAATATTTGGCAGTGCCTTGGCTGACATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCATCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282543" ref_strand="-" ref_description="SGN-E282543 [cLER-18-J1]">
      <seq>aactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttcggtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="99058" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99358" g_stop="99767" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="429"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282543" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99358" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539481" ref_strand="-" ref_description="SGN-E539481 [TUS-59-E5]">
      <seq>tcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttctgtaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="99270" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99570" g_stop="99767" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="199" polyA_stop="218"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E539481" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539481" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99570" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>TCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330609" ref_strand="+" ref_description="SGN-E330609 [cTOD-8-H21]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactaccaacatttgtagtagtcgtagtcgaggaggaggattgacagacttcttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcaacgagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="104026" stop="105156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104326" g_stop="104856" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E330609" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104326" e_stop="104856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTA-CAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACCAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAACGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348509" ref_strand="+" ref_description="SGN-E348509 [cTOF-30-D19]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactacaacatttgtagtagtcgtagtcgaggaggaggattgacagacttctttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcagagagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="104026" stop="105156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104326" g_stop="104856" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E348509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104326" e_stop="104856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTC-TTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGAGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311544" ref_strand="+" ref_description="SGN-E311544 [cTOA-6-M9]">
      <seq>taagacgcatgcagaatctctctggatacatttttggtactgtttggtggggaattgctcttaacttgattgcttattttgttgcctcccatgcagtgggagcatgttggtacttgctaggaatccaaagggcagcaaaatgtttgaaacaacagtgtagagttacaaatggttgtagcctaagaatgttggcatgtgaagagaaaatattttatggaacaagtagtttggtgaagcatagaagtagagtcatatggggtgagtccaaaattgcaagatcaacatgtctagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaatgagaatcgttttgagaaaatattatttcccatcttctggggtctcatgactctcagtacatttggaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="106404" stop="107798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106704" g_stop="106795" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107174" g_stop="107487" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="406" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107648" g_stop="107663" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="422" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E311544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106704" e_stop="106795"/>
          <exon e_start="107174" e_stop="107487"/>
          <exon e_start="107648" e_stop="107663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTG</genome_strand>
        <mrna_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473470" ref_strand="+" ref_description="SGN-E473470 [cSTB-32-B19]">
      <seq>tttggtggggaattgctctcaacttgattgcttattttgttgcctctcacgcagtgggagcatgttggtacttgctaggaatccaaagggcagcaaaatgtttgaaacaacagtgcagagttacaaatggttgtagcctaagtatgttggcatgtgaagagcaaatattttatggaacaagtaatttggtgaagcataaaagtagagtcatatggggtgagaccaaaattccaagatcaacatgtctagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaatgagaatcgtttcgagaaaatattatttcccatcttctggggtcttatgactctcagtacatttggcaatttggagagcacaacagattggttggaagatgtattcataatcattgttctcactactggtcttcttcttgtcactatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="106446" stop="108042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106746" g_stop="106795" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107174" g_stop="107487" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="364" r_length="314" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107648" g_stop="107742" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="459" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E473470" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106746" e_stop="106795"/>
          <exon e_start="107174" e_stop="107487"/>
          <exon e_start="107648" e_stop="107742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGA</genome_strand>
        <mrna_strand>TTTGGTGGGGAATTGCTCTCAACTTGATTGCTTATTTTGTTGCCTCTCAC..........................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGCAGAGTTACAAATGGTTGTAGCCTAAGTATGTTGGCATGTGAAGAGCAAATATTTTATGGAACAAGTAATTTGGTGAAGCATAAAAGTAGAGTCATATGGGGTGAGACCAAAATTCCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTCGAGAAAATATTATTTCCCATCTTCTGGGGTCTTATGACTCTCAG................................................................................................................................................................TACATTTGGCAATTTGGAGAGCACAACAGATTGGTTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473465" ref_strand="+" ref_description="SGN-E473465 [cSTB-32-B7]">
      <seq>tttggtggggaattgctctcaacttgattggttattttggtgcctctcacacagtgggagcatgttggtacttgctatgaatccaaagggcagcaaaatgtttgaaacaacagtgcagagttacaaatggttgtagcctaagtatgttggcatgtgaagagcaaatattttatggaacaagtaatttggtgaagcataaaagtagagtcatatggggtgagaccaaaattccaagatcaacatgtgtagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="106446" stop="107730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106746" g_stop="106795" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107174" g_stop="107430" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="307" r_length="257" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E473465" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106746" e_stop="106795"/>
          <exon e_start="107174" e_stop="107430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAA</genome_strand>
        <mrna_strand>TTTGGTGGGGAATTGCTCTCAACTTGATTGGTTATTTTGGTGCCTCTCAC..........................................................................................................................................................................................................................................................................................................................................................................................ACAGTGGGAGCATGTTGGTACTTGCTATGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGCAGAGTTACAAATGGTTGTAGCCTAAGTATGTTGGCATGTGAAGAGCAAATATTTTATGGAACAAGTAATTTGGTGAAGCATAAAAGTAGAGTCATATGGGGTGAGACCAAAATTCCAAGATCAACATGTGTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737626" ref_strand="+" ref_description="SGN-E737626 [LC10CD12]">
      <seq>tcatgactctcagtacatttggaaacttggagagcacaacagattggctggaagatgtattcataatcattgttctcactactggtcttcttcttgtcactatgttgattggtaatatcaaggtattcttgcatgcaacaacatcaaagaaacaagcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggatacaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgaccgcgtaaaatccttgattttcactaaaggagaaacaataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggtcatctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="107345" stop="109971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107475" g_stop="107487" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107648" g_stop="107756" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="122" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107757" i_stop="108158" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108159" g_stop="108395" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="359" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109347" g_stop="109433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="446" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109555" g_stop="109671" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="563" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E737626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107475" e_stop="107487"/>
          <exon e_start="107648" e_stop="107756"/>
          <exon e_start="108159" e_stop="108395"/>
          <exon e_start="109347" e_stop="109433"/>
          <exon e_start="109555" e_stop="109671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAGGTAACCTTCCTAAACATGAGTTTCAATATAGCTATTCAATTTTTCTTGTATTTATATTTTTATATTTTGAATTTCATAGTGTAGATGCTGACTCTGTTAGTGTAGAGAGCATGTGATGTTATTTGGGATTGTTTGATTGCTGATTATAGTTATGTACGTAGGAATTGATTTAGTTATTTCATCATGTATAAAAGAAAATACATAAATTGACTGAGATCTTATACTACATGTGTTTATTTGTGTAGAATTATAGAACGATGGACAAACATGGTACATGTTATGTTGAATTGTATACCAAGTGCATACGTAAACAATTCACCTCCTAACCAGCAACCAAACAAACGTAAAGGTGTTGTATATGTGGTGATATAATAGTAATTATAATAATGTTGGTGTACGTAGGTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAAC</genome_strand>
        <mrna_strand>TCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434729" ref_strand="+" ref_description="SGN-E434729 [STM-60-I22]">
      <seq>gaaacaagcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggattcaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgatcgcgtcaagtccttgattttcacaaagggggaaaccataacaagagaaggtgatccagttcagagaatgttgttcatagtgagaggccatctccaaagcagtcaagaacttcgagatggtgtcgaaagctgttgcatgctaggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctcccgccttcctcctcatcgctagtgactctcgagacgacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacattttcgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacatcattgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="107885" stop="110502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108185" g_stop="108395" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109347" g_stop="109433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="298" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121">
            <donor d_prob="0.942" d_score="0.86"/>
            <acceptor a_prob="0.018" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109555" g_stop="109697" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="441" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109948" g_stop="110203" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="697" r_length="256" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E434729" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108185" e_stop="108395"/>
          <exon e_start="109347" e_stop="109433"/>
          <exon e_start="109555" e_stop="109697"/>
          <exon e_start="109948" e_stop="110203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCC</genome_strand>
        <mrna_strand>GAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATTCAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGATCGCGTCAAGTCCTTGATTTTCACAAAGGGGGAAACC.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAGAGAATGTTGTTCATAGTGAGAGGCCATCTCCAAAGCAGTCAAGAACTTCGAGATGGTGTCGAAAGCTGTTGCATGCTAGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTCCCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACGACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTTCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACATCATTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409792" ref_strand="+" ref_description="SGN-E409792 [PPI-15-G15]">
      <seq>gaaacaagcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggattcaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgatcgcgtcaagtccttgattttcacaaagggggaaaccataacaagagaaggtgatccagttcagagaatgttgttcatagtgagaggccatctccaaagcagtcaagaacttcgagatggtgtcgaaagctgttgcatgctaggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctcccgccttcctcctcatcgctagtgactctcgagacgacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacattttcgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggaatatagacaccggctgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="107885" stop="110490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108185" g_stop="108395" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109347" g_stop="109433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="298" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121">
            <donor d_prob="0.942" d_score="0.86"/>
            <acceptor a_prob="0.018" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109555" g_stop="109697" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="441" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109948" g_stop="110190" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="683" r_length="242" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E409792" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108185" e_stop="108395"/>
          <exon e_start="109347" e_stop="109433"/>
          <exon e_start="109555" e_stop="109697"/>
          <exon e_start="109948" e_stop="110190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCT</genome_strand>
        <mrna_strand>GAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATTCAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGATCGCGTCAAGTCCTTGATTTTCACAAAGGGGGAAACC.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAGAGAATGTTGTTCATAGTGAGAGGCCATCTCCAAAGCAGTCAAGAACTTCGAGATGGTGTCGAAAGCTGTTGCATGCTAGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTCCCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACGACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTTCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGA-ATATAGACACCGGCTGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726408" ref_strand="+" ref_description="SGN-E726408 [LA11CH09]">
      <seq>caatcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggatacaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgaccgcgtaaaatccttgattttcactaaaggagaaacaataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggtcatctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgattttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="107889" stop="110663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108189" g_stop="108395" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109347" g_stop="109433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="294" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109555" g_stop="109697" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="437" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109948" g_stop="110363" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="854" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E726408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108189" e_stop="108395"/>
          <exon e_start="109347" e_stop="109433"/>
          <exon e_start="109555" e_stop="109697"/>
          <exon e_start="109948" e_stop="110363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGA-TTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</genome_strand>
        <mrna_strand>CAATCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409026" ref_strand="+" ref_description="SGN-E409026 [PPI-12-L18]">
      <seq>gaggagaagaaggttgcctcaaggattcaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgatcgcgtcaagtccttgattttcacaaagggggaaaccataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggccatctccaaagcagtcaagaacttcgagatggtgtcgaaagttgttgcatgttaggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagacgatgtcaagtatgtcactcaacattttcactacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggttgacactcacatcgttgtcgttcattcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="107930" stop="110514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108230" g_stop="108395" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109347" g_stop="109433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="253" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121">
            <donor d_prob="0.942" d_score="0.86"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109555" g_stop="109697" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="396" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109948" g_stop="110214" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="663" r_length="267" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E409026" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108230" e_stop="108395"/>
          <exon e_start="109347" e_stop="109433"/>
          <exon e_start="109555" e_stop="109697"/>
          <exon e_start="109948" e_stop="110214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACC</genome_strand>
        <mrna_strand>GAGGAGAAGAAGGTTGCCTCAAGGATTCAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGATCGCGTCAAGTCCTTGATTTTCACAAAGGGGGAAACC.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGCCATCTCCAAAGCAGTCAAGAACTTCGAGATGGTGTCGAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGACGATGTCAAGTATGTCACTCAACATTTTCACTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGTTGACACTCACATCGTTGTCGTTCATTCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237483" ref_strand="+" ref_description="SGN-E237483 [cLED-19-C6]">
      <seq>catctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="109306" stop="110439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109606" g_stop="109697" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109948" g_stop="110139" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="284" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E237483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109606" e_stop="109697"/>
          <exon e_start="109948" e_stop="110139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</genome_strand>
        <mrna_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727560" ref_strand="+" ref_description="SGN-E727560 [LA15AC02]">
      <seq>cggaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtaagtttaggagtgagagtagttgtttgtatttgggtaattaatttgaaaaacagatctagtaaactagaatggtagtgtacacaaggttaattcactctaggattgatggtcccatcccaataatcactaaaataaaatgataacacctttggcttcccagaatcttgggtaaacaggctttcgtatattttgatgtgttactagcctgaatattttgtgtgttcttcattcattttttccccccaacaggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgatttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatgagataggagcacatccccctccctctatatgtccttcaattatccattcatgtgatatgtagtagtctcttcgtttcaatttatgtgaattcgtggacacccgagttaagaaagaaagaaaaatttgatctacagagtctgtagattttgaggtcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="109324" stop="110818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109622" g_stop="110514" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="896" r_length="896" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="900" polyA_stop="921"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E727560" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109622" e_stop="110514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATA-TTT-TGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTAC--AGTCTGTAGATTTTGAG</genome_strand>
        <mrna_strand>CGGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATAATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTACTAGCCTGAATATTTTGTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCCGAGTTAAGAAAG-AAAGAAAAATTTGATCTACAGAGTCTGTAGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391686" ref_strand="+" ref_description="SGN-E391686 [TUS-27-D20](-)">
      <seq>gaaggtgaaagaaggcacaccgatttatgtacctgagttgtttgatgaacaaaaggataaagtttgtattgagcgtactctaaaggtggtgtttttggaccctgaacgcccttttccagcactggataaaataaaacgtcagctggcccaagctgagggtgcaacagaaggtgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagcggagggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtataatcagatatgcactttttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagaacactgagtggagatttaagattatataagattagaaataattatattcaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="111509" stop="110271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111201" g_stop="111124" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111123" i_stop="111041" i_length="83">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111040" g_stop="110921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="238" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110920" i_stop="110825" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110824" g_stop="110571" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="492" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E391686" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111201" e_stop="111124"/>
          <exon e_start="111040" e_stop="110921"/>
          <exon e_start="110824" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</genome_strand>
        <mrna_strand>TTTGATGAACAAAAGGATAAAGTTTGTATTGAGCGTACTCTAAAGGTGGTGTTTTTGGACCCTGAACGCCCTTTTCCA...................................................................................GCACTGGATAAAATAAAACGTCAGCTGGCCCAAGCTGAGGGTGCAACAGAAGGTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTTTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400890" ref_strand="+" ref_description="SGN-E400890 [PPC-2-O4]">
      <seq>cagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtaaaatcagatccacactttttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagaacaatgagtggagatttaagattatttaagattagaaataattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0140M01-xBlQq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 upload_account_name:italy">
        <position start="111072" stop="110288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110772" g_stop="110580" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E400890" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110772" e_stop="110580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAA</genome_strand>
        <mrna_strand>CAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTAAAATCAGATCCACACTTTTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACAATGAGTGGAGATTTAAGATTATTTAAGATTAGAAATAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>232</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9864" PGL_stop="13203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9864" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="9864" e_stop="10045" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="12270" e_stop="12619" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9864" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9881" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
              <exon start="10202" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9962" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9965" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9968" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
              <exon start="10202" stop="10415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9976" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9978" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9985" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9985" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9987" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9997" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9997" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10000" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10000" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739919" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10217" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10280" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10377" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10400" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11062" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11080" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11116" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11134" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11231" stop="11395"/>
              <exon start="12270" stop="12600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11244" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11349" stop="11395"/>
              <exon start="12270" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11349" stop="11395"/>
              <exon start="12270" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGTGGCTATACTAGTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACT</gDNA_template>
            <first_frame> N  V  W  L  Y  *  L  L  G  L  S  S  H  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N  S  G  V  *  I  S  L  H  A  Y  *  L  I  S  L  D  V  Y  </first_frame>
            <second_frame>  M  C  G  Y  T  S  Y  L  A  Y  L  V  I  E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  V  V  S  E  S  V  Y  T  H  I  S  *  F  H  W  M  F  T </second_frame>
            <third_frame>   C  V  A  I  L  V  T  W  L  I  *  S  L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q  W  C  L  N  Q  F  T  R  I  L  V  N  F  T  G  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9864" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="13190" e_stop="13203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="9864" e_stop="10045" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="12270" e_stop="12565" e_length="296"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="13190" e_stop="13203" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9864" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9881" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
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              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
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              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
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              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
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              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9962" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9965" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
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              <exon start="11213" stop="11365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9968" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
              <exon start="10202" stop="10415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9976" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9978" stop="10045"/>
              <exon start="10202" stop="10455"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
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              <exon start="12270" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="11213" stop="11225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348944" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9985" stop="10045"/>
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              <exon start="12270" stop="12450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458428" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409985" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E329545" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E732578" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11264" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11323" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11326" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGTGGCTATACTAGTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : AAAAAAATAAAAAA</gDNA_template>
            <first_frame> N  V  W  L  Y  *  L  L  G  L  S  S  H  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : K  K  N  K  K </first_frame>
            <second_frame>  M  C  G  Y  T  S  Y  L  A  Y  L  V  I  E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  K  K  I  K   </second_frame>
            <third_frame>   C  V  A  I  L  V  T  W  L  I  *  S  L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q :   K  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9864" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="12828" e_stop="12839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="9864" e_stop="10045" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="12270" e_stop="12565" e_length="296"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12566" i_stop="12827" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="12828" e_stop="12839" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9864" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9881" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
              <exon start="10202" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9950" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9962" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9965" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9968" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
              <exon start="10202" stop="10415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9976" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9978" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10039" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10040" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10041" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10217" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11080" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11116" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11134" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="12828" stop="12836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGTGGCTATACTAGTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : CAAAAAAAAATA</gDNA_template>
            <first_frame> N  V  W  L  Y  *  L  L  G  L  S  S  H  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : T  K  K  N  </first_frame>
            <second_frame>  M  C  G  Y  T  S  Y  L  A  Y  L  V  I  E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  Q  K  K  I </second_frame>
            <third_frame>   C  V  A  I  L  V  T  W  L  I  *  S  L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  H :   K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9864" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="13189" e_stop="13202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="9864" e_stop="10045" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E217761" strand="+"/>
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          <PGS_line>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGTGGCTATACTAGTTACTTGGCTTATCTAGTCATTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : AAAAAAAATAAAAA</gDNA_template>
            <first_frame> N  V  W  L  Y  *  L  L  G  L  S  S  H  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : K  K  K  *  K </first_frame>
            <second_frame>  M  C  G  Y  T  S  Y  L  A  Y  L  V  I  E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  K  K  N  K   </second_frame>
            <third_frame>   C  V  A  I  L  V  T  W  L  I  *  S  L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q :   K  K  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="10198" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10198" e_stop="10455" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="12270" e_stop="12601" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10198" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229223" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10198" stop="10455"/>
              <exon start="11024" stop="11116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10217" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10280" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10377" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10400" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11062" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11080" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11116" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11134" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11231" stop="11395"/>
              <exon start="12270" stop="12600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11242" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11244" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11349" stop="11395"/>
              <exon start="12270" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11349" stop="11395"/>
              <exon start="12270" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAA</gDNA_template>
            <first_frame> S  A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  V  V  S  E  S  V  Y  T  H  I  S  * </first_frame>
            <second_frame>  Q  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q  W  C  L  N  Q  F  T  R  I  L  V   </second_frame>
            <third_frame>   S  Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N  S  G  V  *  I  S  L  H  A  Y  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10199" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22512" PGL_stop="14552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22512" e_stop="22221"/>
            <exon e_start="15108" e_stop="14552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22512" e_stop="22221" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.960">
            <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="15108" e_stop="14552" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22512" stop="22221"/>
              <exon start="15108" stop="14669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22512" stop="22221"/>
              <exon start="15108" stop="14984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15106" stop="14552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG : GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCACAATTACTTGAA</gDNA_template>
            <first_frame> F  I  K  N  F  V  *  Q  I  S  L  K  L  M  E  S  V  A  I  L  S  L  L  L  V  V  V  I  P  Y  G  F  S  C  V  Q  T  C  E  I  H  C  I  E  G  E  K  N  A  L  I  K  F  I  Q  G  F  K  N  S  S  Q  N  M  L  W  L  D  E  N  C  C  Q  W  K  G  V  K  C  D  N  K  T  G  H  V  I  T  L  D  L  Q  N  Q  F  L  Q   : G  E  V  P  L  G  K  Q  F  N  T  F  E  N  S  S  Y  I  G  N  P  N  L  C  G  A  P  L  S  R  V  C  S  D  N  I  H  E  D  M  I  D  C  S  I  N  K  N  Q  E  V  H  E  Q  G  E  S  N  N  W  L  E  E  Y  S  F  Y  T  S  M  V  I  G  F  N  T  G  F  L  L  F  W  V  T  L  L  L  K  K  S  W  R  Y  A  Y  M  R  C  L  E  N  M  G  N  K  I  Y  V  F  A  A  I  R  W  R  K  F  Q  A  A  K  T  V  T  N  C  P  N  *  A  A  D  S  L  Y  F  S  I  F  S  F  I  I  S  C  F  L  L  P  T  C  C  F  K  Y  N  V  C  F  Y  R  H  L  Y  F  I  V  M  F  F  V  M  K  *  R  N  *  F  G  V  I  A  Q  L  L  E </first_frame>
            <second_frame>  S  S  K  I  L  S  N  K  F  H  *  N  L  W  K  V  *  L  F  F  P  F  S  L  L  L  L  F  H  M  D  F  L  V  S  K  L  V  K  F  T  A  L  K  V  K  K  M  L  L  *  S  S  S  R  A  S  R  I  R  H  R  T  C  C  G  L  T  K  I  A  V  N  G  K  V  L  N  A  I  T  K  Q  G  M  *  S  L  L  I  C  K  I  N  S  Y  K  :  E  K  F  H  L  E  N  N  L  T  P  L  R  I  V  L  I  L  E  I  Q  T  C  A  E  L  H  S  H  E  S  A  R  I  I  Y  M  R  T  *  L  T  V  V  L  T  R  I  R  R  F  M  S  R  E  K  A  T  T  G  S  R  N  I  R  S  T  Q  A  W  *  L  D  S  I  Q  V  S  C  C  F  G  L  L  Y  C  *  K  S  H  G  D  M  H  I  *  G  A  W  K  T  W  A  I  R  F  M  S  L  L  P  S  D  G  E  N  F  K  Q  Q  R  Q  *  P  I  V  Q  I  E  L  L  I  L  F  T  F  L  S  F  L  L  *  Y  R  V  F  Y  F  L  L  V  V  L  N  I  M  F  V  F  I  G  T  Y  I  L  L  *  C  F  L  L  *  S  N  E  I  D  L  V  *  L  H  N  Y  L   </second_frame>
            <third_frame>   H  Q  K  F  C  L  T  N  F  T  K  T  Y  G  K  C  S  Y  S  F  P  S  P  C  C  C  Y  S  I  W  I  F  L  C  P  N  L  *  N  S  L  H  *  R  *  K  K  C  S  Y  K  V  H  P  G  L  Q  E  F  V  T  E  H  V  V  A  *  R  K  L  L  S  M  E  R  C  *  M  R  *  Q  N  R  A  C  D  H  S  *  S  A  K  S  I  L  T  R :   R  S  S  T  W  K  T  I  *  H  L  *  E  *  F  L  Y  W  K  S  K  L  V  R  S  S  T  L  T  S  L  L  G  *  Y  T  *  G  H  D  *  L  *  Y  *  Q  E  S  G  G  S  *  A  G  R  K  Q  Q  L  A  R  G  I  F  V  L  H  K  H  G  N  W  I  Q  Y  R  F  L  V  V  L  G  Y  S  T  V  E  K  V  M  E  I  C  I  Y  E  V  P  G  K  H  G  Q  *  D  L  C  L  C  C  H  Q  M  E  K  I  S  S  S  K  D  S  D  Q  L  S  K  L  S  C  *  F  S  L  L  F  Y  L  F  F  Y  N  I  V  F  S  T  S  Y  L  L  F  *  I  *  C  L  F  L  S  A  L  I  F  Y  C  N  V  F  C  Y  E  V  T  K  L  I  W  C  N  C  T  I  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22491" stop="22221"/>
                    <exon start="15108" stop="14723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISLKLMESVAILSLLLVVVIPYGFSCVQTCEIHCIEGEKNALIKFIQGFKNSSQNMLWLDENCCQWKGVKCDNKTGHVITLDLQNQFLQGEVPLGKQFNTFENSSYIGNPNLCGAPLSRVCSDNIHEDMIDCSINKNQEVHEQGESNNWLEEYSFYTSMVIGFNTGFLLFWVTLLLKKSWRYAYMRCLENMGNKIYVFAAIRWRKFQAAKTVTNCPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19353" e_stop="18926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="19353" e_stop="18926" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19353" stop="18926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAA</gDNA_template>
            <first_frame> M  I  F  N  R  I  Y  R  I  *  R  Y  I  I  I  C  M  I  K  H  I  H  L  Y  R  S  S  I  I  C  G  *  *  Y  F  F  C  D  N  I  F  E  R  K  *  I  F  H  E  C  N  L  P  A  H  *  Y  D  M  S  L  Q  I  H  D  F  I  S  F  L  C  L  *  V  P  N  E  D  *  S  C  C  S  W  S  K  F  I  S  S  W  Q  N  *  Y  K  T  *  T  S  K  H  P  Q  M  F  *  I  R  C  S  F  I  K  K  F  I  W  *  L  P  L  *  Y  S  C  R  H  S  V  Y  Q  I  S  C  S  F  N  T  I  S  P   </first_frame>
            <second_frame>  *  S  S  I  E  S  T  G  F  E  G  I  L  S  S  A  *  S  N  I  S  I  C  I  G  A  V  *  S  V  V  D  D  T  S  F  V  I  T  S  L  K  G  N  E  S  S  M  N  V  T  S  L  L  T  D  M  T  *  V  S  K  S  M  T  L  Y  P  F  C  V  S  E  Y  P  M  K  T  D  L  V  A  L  G  A  N  L  S  L  L  G  K  T  D  T  K  H  K  H  P  N  T  L  K  C  S  R  L  G  A  R  L  *  R  S  S  Y  G  D  F  P  C  N  T  V  V  G  I  L  F  I  R  *  A  A  V  L  T  Q  F  P  Q  </second_frame>
            <third_frame>   D  L  Q  *  N  L  Q  D  L  K  V  Y  Y  H  L  H  D  Q  T  Y  P  F  V  *  E  Q  Y  N  L  W  L  M  I  L  L  L  *  *  H  L  *  K  E  M  N  L  P  *  M  *  P  P  C  S  L  I  *  H  E  S  P  N  P  *  L  Y  I  L  F  V  S  L  S  T  Q  *  R  L  I  L  L  L  L  E  Q  I  Y  L  F  L  A  K  L  I  Q  N  I  N  I  Q  T  P  S  N  V  L  D  *  V  L  V  Y  K  E  V  H  M  V  T  S  L  V  I  Q  L  *  A  F  C  L  S  D  K  L  Q  F  *  H  N  F  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0140M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33228" PGL_stop="32692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33228" e_stop="32692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33228" e_stop="32692" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33228" stop="32692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATAAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAACACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</gDNA_template>
            <first_frame> M  I  K  G  I  K  N  F  K  I  Y  H  Y  V  I  K  I  F  I  F  N  Q  I  L  I  *  *  R  D  K  M  T  I  R  L  F  T  C  N  N  I  *  S  L  Q  Q  N  F  F  L  G  A  N  E  Q  C  S  G  E  *  I  N  S  A  G  F  Q  S  S  R  C  V  L  L  F  S  F  L  F  L  T  N  P  C  *  P  T  F  D  H  E  L  E  *  H  Q  S  S  D  H  C  Y  F  L  H  H  F  L  H  S  Y  I  Q  I  F  D  G  A  S  S  S  *  K  F  H  Y  R  L  R  F  R  S  K  E  D  H  R  S  H  V  *  L  F  L  L  E  M  M  R  Q  H  H  Y  R  P  L  F  F  S  L  C  H  A  S  L  C  S  E  R  F  H  V  I  F  V  F  L  S  L </first_frame>
            <second_frame>  *  *  R  G  L  R  T  S  K  S  T  I  M  *  L  K  Y  L  Y  S  I  K  F  *  F  S  K  G  T  K  *  Q  F  D  F  S  L  V  I  I  Y  D  L  C  S  K  T  S  S  L  E  Q  M  N  N  V  V  G  N  E  L  T  Q  Q  A  S  K  A  A  D  A  Y  Y  F  S  V  F  C  S  *  L  I  L  A  N  P  P  L  T  T  N  L  N  S  T  K  V  L  I  T  A  T  F  S  T  T  F  C  T  R  I  F  R  F  S  T  V  L  L  L  R  R  S  S  T  I  A  Y  A  S  V  Q  K  R  I  I  D  P  T  Y  D  S  S  C  W  R  *  *  G  N  T  T  I  V  L  C  F  S  P  F  V  M  L  L  Y  V  L  R  D  F  M  *  F  L  Y  S  F  L   </second_frame>
            <third_frame>   D  K  G  D  *  E  L  Q  N  L  P  L  C  N  *  N  I  Y  I  Q  S  N  F  N  L  V  K  G  Q  N  D  N  S  T  F  H  L  *  *  Y  M  I  S  A  A  K  L  L  P  W  S  K  *  T  M  *  W  G  M  N  *  L  S  R  L  P  K  Q  Q  M  R  T  T  F  Q  F  F  V  L  D  *  S  L  L  T  H  L  *  P  R  T  *  I  A  P  K  F  *  S  L  L  L  S  P  P  L  S  A  L  V  Y  S  D  F  R  R  C  F  F  F  V  E  V  P  L  S  L  T  L  P  F  K  R  G  S  S  I  P  R  M  T  L  L  V  G  D  D  E  A  T  P  L  S  S  F  V  F  L  P  L  S  C  F  F  M  F  *  E  I  S  C  N  F  C  I  P  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32932" stop="32726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLLSPPLSALVYSDFRRCFFFVEVPLSLTLPFKRGSSIPRMTLLVGDDEATPLSSFVFLPLSCFFMF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32987" stop="32787"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILANPPLTTNLNSTKVLITATFSTTFCTRIFRFSTVLLLRRSSTIAYASVQKRIIDPTYDSSCWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32808" PGL_stop="33214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32808" e_stop="33214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32808" e_stop="33214" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32808" stop="33214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32843" stop="33214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</gDNA_template>
            <first_frame> I  R  G  I  D  D  P  L  L  N  G  S  V  S  D  S  G  T  S  T  K  K  K  H  R  R  K  S  E  Y  T  S  A  E  S  G  G  E  S  S  S  D  Q  N  F  G  A  I  Q  V  R  G  Q  R  W  V  S  K  D  *  S  R  T  K  N  *  K  V  V  R  I  C  C  F  G  S  L  L  S  *  F  I  P  H  Y  I  V  H  L  L  Q  G  R  S  F  A  A  E  I  I  Y  Y  Y  K  *  K  V  E  L  S  F  C  P  F  T  K  L  K  F  D  *  I  *  I  F  *  L  H  N  G  R  F  *  S  S   </first_frame>
            <second_frame>  Y  V  G  S  M  I  L  F  *  T  E  A  *  A  I  V  E  L  L  R  R  R  S  T  V  E  N  L  N  I  R  V  Q  K  V  V  E  K  V  A  V  I  R  T  L  V  L  F  K  F  V  V  K  G  G  L  A  R  I  S  Q  E  Q  K  T  E  K  *  Y  A  S  A  A  L  E  A  C  *  V  N  S  F  P  T  T  L  F  I  C  S  K  E  E  V  L  L  Q  R  S  Y  I  I  T  S  E  K  S  N  C  H  F  V  P  L  L  N  *  N  L  I  E  Y  K  Y  F  N  Y  I  M  V  D  F  E  V  L  </second_frame>
            <third_frame>   T  W  D  R  *  S  S  F  E  R  K  R  K  R  *  W  N  F  Y  E  E  E  A  P  S  K  I  *  I  Y  E  C  R  K  W  W  R  K  *  Q  *  S  E  L  W  C  Y  S  S  S  W  S  K  V  G  *  Q  G  L  V  K  N  K  K  L  K  S  S  T  H  L  L  L  W  K  P  A  E  L  I  H  S  P  L  H  C  S  F  A  P  R  K  K  F  C  C  R  D  H  I  L  L  Q  V  K  S  R  I  V  I  L  S  L  Y  *  I  K  I  *  L  N  I  N  I  L  I  T  *  W  *  I  L  K  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0140M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="33980" PGL_stop="35404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33980" e_stop="34826"/>
            <exon e_start="34912" e_stop="35404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.975"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="33980" e_stop="34826" e_length="847"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34827" i_stop="34911" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="34912" e_stop="35404" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33980" stop="34564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33985" stop="34428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33995" stop="34697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33995" stop="34446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33995" stop="34434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="34736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34005" stop="34450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34521" stop="34826"/>
              <exon start="34912" stop="35404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGTCTCCTTCTCTTCTTCTCCCTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAGAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAG : GTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTCATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTCTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACACCTATGTATT</gDNA_template>
            <first_frame> S  C  L  L  L  F  F  S  L  L  S  F  I  V  S  L  M  K  R  E  G  L  D  K  G  A  T  F  S  L  *  *  Q  *  Q  Y  L  F  F  R  *  L  S  T  Y  H  N  P  P  P  W  D  K  Q  Q  F  M  L  R  I  G  T  *  Q  D  *  F  V  H  *  E  K  K  E  G  K  L  K  N  Q  P  K  M  N  D  L  F  S  N  S  F  K  K  Y  Q  D  L  K  K  Q  T  E  V  D  D  L  E  G  G  Q  D  G  Q  P  G  T  E  S  I  D  L  A  K  F  F  E  D  V  E  N  V  K  E  D  M  K  D  V  E  K  F  H  K  K  L  Q  E  S  N  E  E  S  K  L  V  H  N  A  K  T  V  K  E  I  R  S  R  M  D  S  D  V  S  Q  V  L  K  R  V  K  M  I  K  G  K  L  E  A  L  E  R  S  N  A  A  H  R  K  I  S  G  C  G  P  G  S  S  A  D  R  T  R  T  S  V  V  S  G  L  G  K  K  L  K  V  L  M  D  D  F  Q  G  L  R  T  R  M  N  D  E  Y  K  E  T  V  A  R  R  Y  F  T  V  T  G  E  K  A  D  D  G  L  I  E  N  L  I  S  S  G  E  S  E  S  F  L  Q  K  A  I  Q  E  Q   : G  R  G  Q  I  M  D  T  I  S  E  I  Q  E  R  H  D  A  V  K  E  I  E  K  N  L  I  E  L  H  Q  I  F  L  D  M  A  A  L  V  E  A  Q  G  Q  Q  L  N  D  I  E  S  H  V  A  H  A  S  S  F  V  R  R  G  T  E  Q  L  Q  E  A  R  E  I  Q  K  S  S  R  K  C  A  C  F  A  V  F  L  I  I  L  L  I  I  L  L  T  F  P  L  W  W  P  L  V  A  S  K  I  L  *  D  D  L  F  F  L  G  Q  Y  D  Y  C  L  *  E  F  Y  S  C  I  H  C  Q  Q  F  V  F  F  D  I  V  F  I  E  A  I  F  V  T  S  M  V  T  Y  I  D  M  F  Q  D  T  Y  V   </first_frame>
            <second_frame>  L  V  S  F  S  S  S  P  S  S  H  S  S  S  R  *  *  R  E  K  V  *  T  R  A  R  R  F  P  F  N  N  N  N  N  T  C  F  F  V  D  Y  Q  P  I  T  T  L  L  R  G  I  N  N  N  L  C  *  G  *  V  H  N  K  T  N  L  S  I  E  K  K  R  R  G  N  *  K  I  N  Q  K  *  M  T  Y  S  L  I  R  L  K  S  I  R  T  L  K  N  R  P  K  *  M  I  W  R  V  V  K  M  A  N  Q  V  L  K  V  L  I  L  L  N  S  L  K  M  *  K  M  *  K  K  I  *  K  M  S  K  N  F  I  R  N  Y  K  N  Q  M  K  R  A  N  L  C  I  M  P  R  L  *  K  K  *  G  L  G  W  I  Q  M  C  H  R  S  *  N  A  L  R  *  S  K  E  N  W  K  P  S  N  D  P  M  Q  L  I  G  R  S  R  G  V  D  Q  V  L  L  Q  I  E  Q  G  L  L  *  L  V  V  *  E  R  N  *  K  Y  S  W  M  I  F  K  D  *  G  Q  E  *  M  M  N  I  R  K  Q  L  Q  E  G  T  L  L  *  Q  E  R  K  L  T  M  G  *  L  R  I  *  Y  Q  V  G  R  A  S  L  S  S  K  R  Q  S  R  N  K  :  V  G  V  R  L  W  T  Q  F  P  K  Y  K  K  D  M  M  L  *  K  R  L  R  R  I  *  L  S  Y  T  K  Y  F  *  T  W  L  H  W  W  K  H  K  G  N  N  *  M  I  L  K  V  M  W  H  M  Q  V  P  L  L  G  G  A  Q  S  N  Y  K  K  L  G  R  F  K  K  V  Q  E  S  V  L  V  L  L  F  S  S  S  F  C  L  S  F  F  L  L  S  H  Y  G  G  H  *  L  L  A  K  Y  Y  K  M  T  F  F  F  L  G  N  M  T  I  V  C  K  N  F  I  L  V  F  I  V  N  N  L  F  S  L  T  L  Y  L  *  K  Q  F  L  S  H  Q  W  L  H  I  *  T  C  F  K  T  P  M  Y  </second_frame>
            <third_frame>   L  S  P  S  L  L  L  P  P  L  I  H  R  L  V  N  E  E  R  R  F  R  Q  G  R  D  V  F  P  L  I  T  I  T  I  P  V  F  S  L  T  I  N  L  S  Q  P  S  S  V  G  *  T  T  I  Y  V  E  D  R  Y  I  T  R  L  I  C  P  L  R  K  K  G  G  E  I  E  K  S  T  K  N  E  *  L  I  L  *  F  V  *  K  V  S  G  P  *  K  T  D  R  S  R  *  F  G  G  W  S  R  W  P  T  R  Y  *  K  Y  *  S  C  *  I  L  *  R  C  R  K  C  E  R  R  Y  E  R  C  R  K  I  S  *  E  I  T  R  I  K  *  R  E  Q  T  C  A  *  C  Q  D  C  E  R  N  K  V  *  D  G  F  R  C  V  T  G  L  K  T  R  *  D  D  Q  R  K  I  G  S  P  R  T  I  Q  C  S  S  *  E  D  L  G  V  W  T  R  F  F  C  R  S  N  K  D  F  C  S  *  W  F  R  K  E  I  K  S  T  H  G  *  F  S  R  I  E  D  K  N  E  *  *  I  *  G  N  S  C  K  K  V  L  Y  C  D  R  R  E  S  *  R  W  V  N  *  E  F  D  I  K  W  G  E  R  V  F  P  P  K  G  N  P  G  T  R :   *  G  S  D  Y  G  H  N  F  R  N  T  R  K  T  *  C  C  E  R  D  *  E  E  F  D  *  A  T  P  N  I  F  R  H  G  C  I  G  G  S  T  R  A  T  I  K  *  Y  *  K  S  C  G  T  C  K  F  L  C  *  E  G  H  R  A  I  T  R  S  *  G  D  S  K  K  F  K  K  V  C  L  F  C  C  F  P  H  H  F  A  Y  H  S  S  Y  F  P  T  M  V  A  I  S  C  *  Q  N  I  I  R  *  P  F  F  S  W  A  I  *  L  L  F  V  R  I  L  F  L  Y  S  L  S  T  I  C  F  L  *  H  C  I  Y  R  S  N  F  C  H  I  N  G  Y  I  Y  R  H  V  S  R  H  L  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34190" stop="34826"/>
                    <exon start="34912" stop="35243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKEGKLKNQPKMNDLFSNSFKKYQDLKKQTEVDDLEGGQDGQPGTESIDLAKFFEDVENVKEDMKDVEKFHKKLQESNEESKLVHNAKTVKEIRSRMDSDVSQVLKRVKMIKGKLEALERSNAAHRKISGCGPGSSADRTRTSVVSGLGKKLKVLMDDFQGLRTRMNDEYKETVARRYFTVTGEKADDGLIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGQQLNDIESHVAHASSFVRRGTEQLQEAREIQKSSRKCACFAVFLIILLIILLTFPLWWPLVASKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="36537" PGL_stop="39972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36537" e_stop="36671"/>
            <exon e_start="36832" e_stop="36902"/>
            <exon e_start="38269" e_stop="38355"/>
            <exon e_start="39539" e_stop="39972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36537" e_stop="36671" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36832" e_stop="36902" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38269" e_stop="38355" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39539" e_stop="39972" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36537" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36542" stop="36671"/>
              <exon start="36832" stop="36867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36546" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36546" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36550" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36553" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36556" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36568" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36576" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36576" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36577" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATCTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG : ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT : TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG : AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTATTTCAAACT</gDNA_template>
            <first_frame> S  I  S  L  L  R  T  K  L  W  L  P  R  *  Q  W  R  L  V  E  R  Q  P  S  L  E  S  P  P  Q  P  L  R  L  L  F  S  A  A  A  L  P  A  Q  L  :  I  I  M  G  L  L  R  S  I  A  G  K  N  R  *  I  L  V  N  G  R  K  N  I :   L  *  L  H  L  C  P  V  G  A  C  F  S  L  V  H  T  S  Y  S  L  E  A  R  R  T  K  K  R :   T  W  C  K  H  H  N  K  V  G  I  Y  V  A  S  Y  *  G  W  D  N  P  S  P  *  S  R  S  S  L  *  *  Y  N  L  L  D  I  H  F  S  F  D  G  F  S  Y  H  Y  K  I  T  R  E  P  V  S  Y  *  M  V  D  K  S  W  L  H  Q  Y  C  N  I  L  F  L  L  Y  T  M  I  N  E  T  G  F  C  Q  F  A  F  *  G  S  L  S  S  *  S  V  V  W  K  L  Y  S  H  *  S  E  D  P  R  T  I  I  C  R  S  S  A  H  A  V  S  L  N  A  T  E  S  C  V  N  E  D  V  I  K  Q  L  C  I  S  N  </first_frame>
            <second_frame>  R  S  H  F  S  E  Q  S  Y  G  Y  L  V  D  N  G  G  S  S  S  G  S  L  H  S  N  P  L  L  N  H  C  V  S  C  S  A  P  R  P  C  R  R  S  * :   S  S  W  A  S  *  G  Q  L  L  E  R  T  D  E  S  W  S  M  E  G  R  T   : F  C  D  C  I  F  V  R  L  G  L  A  F  L  W  C  I  Q  V  I  L  W  R  Q  E  E  Q  R  R   : E  L  G  A  S  I  T  I  R  W  V  F  T  W  H  H  T  E  V  G  I  I  Q  V  H  N  R  E  V  L  S  N  N  T  T  Y  W  T  F  I  F  H  L  M  D  F  L  I  I  I  K  L  P  E  S  L  *  A  T  K  W  W  T  K  V  G  C  I  N  T  A  I  Y  F  F  F  C  I  L  *  *  M  K  L  V  F  V  S  L  L  S  K  V  H  C  H  L  D  Q  L  C  G  N  C  I  H  I  N  L  K  I  R  A  P  *  F  V  E  A  L  H  M  Q  *  V  S  M  P  L  R  V  V  L  M  K  M  S  S  N  N  C  V  F  Q  T </second_frame>
            <third_frame>   D  L  T  S  Q  N  K  A  M  A  T  S  L  T  M  A  A  R  R  A  A  A  F  T  R  I  P  S  S  T  T  A  S  L  V  Q  R  R  G  L  A  G  A  A   : D  H  H  G  P  P  K  V  N  C  W  K  E  P  M  N  P  G  Q  W  K  E  E  H  :  F  V  I  A  S  L  S  G  W  G  L  L  F  F  G  A  Y  K  L  F  S  G  G  K  K  N  K  E  E  :  N  L  V  Q  A  S  Q  *  G  G  Y  L  R  G  I  I  L  R  L  G  *  S  K  S  I  I  E  K  F  S  L  I  I  Q  L  I  G  H  S  F  F  I  *  W  I  F  L  S  L  *  N  Y  Q  R  A  C  E  L  L  N  G  G  Q  K  L  V  A  S  I  L  Q  Y  T  F  S  F  V  Y  Y  D  K  *  N  W  F  L  S  V  C  F  L  R  F  I  V  I  L  I  S  C  V  E  I  V  F  T  L  I  *  R  S  A  H  H  N  L  *  K  L  C  T  C  S  K  S  Q  C  H  *  E  L  C  *  *  R  C  H  Q  T  I  V  Y  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36539" stop="36671"/>
                    <exon start="36832" stop="36902"/>
                    <exon start="38269" stop="38355"/>
                    <exon start="39539" stop="39562"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLTSQNKAMATSLTMAARRAAAFTRIPSSTTASLVQRRGLAGAADHHGPPKVNCWKEPMNPGQWKEEHFVIASLSGWGLLFFGAYKLFSGGKKNKEENLVQASQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36851" stop="36902"/>
                    <exon start="38269" stop="38355"/>
                    <exon start="39539" stop="39708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQLLERTDESWSMEGRTFCDCIFVRLGLAFLWCIQVILWRQEEQRRELGASITIRWVFTWHHTEVGIIQVHNREVLSNNTTYWTFIFHLMDFLIIIKLPESL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="55385" PGL_stop="57302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55385" e_stop="55581"/>
            <exon e_start="56103" e_stop="56193"/>
            <exon e_start="56369" e_stop="56459"/>
            <exon e_start="56551" e_stop="56581"/>
            <exon e_start="56669" e_stop="56849"/>
            <exon e_start="56998" e_stop="57094"/>
            <exon e_start="57198" e_stop="57302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.022" acc_prob="0.994" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.713" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.786" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.923" e_score="0.969"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="55385" e_stop="55581" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56103" e_stop="56193" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="56369" e_stop="56459" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.022" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56551" e_stop="56581" e_length="31"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.713">
            <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="56669" e_stop="56849" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.786">
            <gDNA_intron_boundary i_start="56850" i_stop="56997" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="56998" e_stop="57094" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.923">
            <gDNA_intron_boundary i_start="57095" i_stop="57197" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="0.905">
            <gDNA_exon_boundary e_start="57198" e_stop="57302" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55385" stop="55581"/>
              <exon start="56103" stop="56193"/>
              <exon start="56369" stop="56459"/>
              <exon start="56551" stop="56581"/>
              <exon start="56669" stop="56849"/>
              <exon start="56998" stop="57094"/>
              <exon start="57198" stop="57266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55425" stop="55581"/>
              <exon start="56103" stop="56193"/>
              <exon start="56369" stop="56459"/>
              <exon start="56551" stop="56581"/>
              <exon start="56669" stop="56830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55434" stop="55581"/>
              <exon start="56103" stop="56193"/>
              <exon start="56369" stop="56459"/>
              <exon start="56551" stop="56581"/>
              <exon start="56669" stop="56849"/>
              <exon start="56998" stop="57094"/>
              <exon start="57198" stop="57302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55434" stop="55581"/>
              <exon start="56103" stop="56193"/>
              <exon start="56369" stop="56459"/>
              <exon start="56551" stop="56581"/>
              <exon start="56669" stop="56839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTCTCTTGCGAAGATCAAATTCAGACCCACAACAATCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC : CTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAG : GCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCG : GAATCTGAAGAGAAGCAGTCTATTGTTCAAG : AAACTTGCACACCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTAATCAAGCTACTGTTAGAAA : GCAAGCCATCAAGAAAAGTGATGCTGGAACTCCAAATTTTGCCCAAGAAAACCAAGCAGTAAAGAGACAAAAACTAGAAGAAGGAAAATCTAGGAAG : ATTCTTGATATTAAACCTCCTCAACATTTGCCACACAAAACAAGACTTGGGGTAGCTAATAGCAGCTCTAACTTGTTTGCATCTGCAGCTAAAACTCGAAAAGAG</gDNA_template>
            <first_frame> I  F  S  L  A  K  I  K  F  R  P  T  T  I  S  L  *  N  V  *  T  Q  L  F  R  N  R  P  G  V  R  V  L  S  A  K  I  L  *  L  C  *  *  R  N  R  R  G  N  T  E  S  *  A  L  V  P  H  F  K  K  L  C  S  F  S :   F  Y  A  K  N  *  N  W  *  N  G  S  T  *  E  P  M  *  L  H  *  C  *  G  V  A  R  *  H  K  :  A  C  Y  *  A  H  F  F  *  K  *  R  R  G  N  A  I  F  N  C  T  R  T  L  H  Q  S  S  *  S   : G  I  *  R  E  A  V  Y  C  S  R :   N  L  H  T  R  T  N  N  N  I  S  E  E  R  L  S  E  D  *  F  Q  E  A  T  N  C  *  K  D  C  K  H  T  *  K  P  F  S  I  K  V  K  N  S  T  T  T  V  A  S  E  *  F  *  S  S  Y  C  *  K  :  A  S  H  Q  E  K  *  C  W  N  S  K  F  C  P  R  K  P  S  S  K  E  T  K  T  R  R  R  K  I  *  E   : D  S  *  Y  *  T  S  S  T  F  A  T  Q  N  K  T  W  G  S  *  *  Q  L  *  L  V  C  I  C  S  *  N  S  K  R  </first_frame>
            <second_frame>  F  F  L  L  R  R  S  N  S  D  P  Q  Q  S  L  C  K  M  Y  E  H  N  S  F  V  I  D  Q  A  Y  E  F  S  A  P  R  F  Y  D  F  V  D  E  E  T  E  E  E  T  Q  K  A  E  H  W  F  H  I  S  R  S  Y  A  P  S   : P  F  M  P  K  I  K  T  G  R  M  V  Q  L  E  S  L  C  D  F  T  D  A  E  E  L  Q  D  N  T  R :   P  A  T  E  L  T  S  S  K  S  K  D  E  V  T  P  Y  L  I  V  P  E  P  C  T  S  L  P  N  P  :  E  S  E  E  K  Q  S  I  V  Q   : E  T  C  T  P  G  P  T  I  T  S  Q  K  S  D  S  R  K  T  N  S  K  R  Q  Q  T  A  K  K  I  A  S  I  L  R  N  P  S  A  L  K  S  K  T  Q  Q  Q  Q  S  H  L  S  S  S  N  Q  A  T  V  R  K :   Q  A  I  K  K  S  D  A  G  T  P  N  F  A  Q  E  N  Q  A  V  K  R  Q  K  L  E  E  G  K  S  R  K  :  I  L  D  I  K  P  P  Q  H  L  P  H  K  T  R  L  G  V  A  N  S  S  S  N  L  F  A  S  A  A  K  T  R  K  E </second_frame>
            <third_frame>   F  F  S  C  E  D  Q  I  Q  T  H  N  N  L  S  V  K  C  M  N  T  T  L  S  *  S  T  R  R  T  S  S  Q  R  Q  D  F  M  T  L  L  M  K  K  Q  K  R  K  H  R  K  L  S  I  G  S  T  F  Q  E  A  M  L  L  L  :  L  L  C  Q  K  L  K  L  V  E  W  F  N  L  R  A  Y  V  T  S  L  M  L  R  S  C  K  I  T  Q   : G  L  L  L  S  S  L  L  L  K  V  K  T  R  *  R  H  I  *  L  Y  Q  N  L  A  P  V  F  L  I  R :   N  L  K  R  S  S  L  L  F  K  :  K  L  A  H  P  D  Q  Q  *  H  L  R  R  A  T  L  G  R  L  I  P  R  G  N  K  L  L  K  R  L  Q  A  Y  L  E  T  L  Q  H  *  S  Q  K  L  N  N  N  S  R  I  *  V  V  L  I  K  L  L  L  E   : S  K  P  S  R  K  V  M  L  E  L  Q  I  L  P  K  K  T  K  Q  *  R  D  K  N  *  K  K  E  N  L  G  R :   F  L  I  L  N  L  L  N  I  C  H  T  K  Q  D  L  G  *  L  I  A  A  L  T  C  L  H  L  Q  L  K  L  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55386" stop="55581"/>
                    <exon start="56103" stop="56193"/>
                    <exon start="56369" stop="56459"/>
                    <exon start="56551" stop="56581"/>
                    <exon start="56669" stop="56849"/>
                    <exon start="56998" stop="57094"/>
                    <exon start="57198" stop="57302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLLRRSNSDPQQSLCKMYEHNSFVIDQAYEFSAPRFYDFVDEETEEETQKAEHWFHISRSYAPSPFMPKIKTGRMVQLESLCDFTDAEELQDNTRPATELTSSKSKDEVTPYLIVPEPCTSLPNPESEEKQSIVQETCTPGPTITSQKSDSRKTNSKRQQTAKKIASILRNPSALKSKTQQQQSHLSSSNQATVRKQAIKKSDAGTPNFAQENQAVKRQKLEEGKSRKILDIKPPQHLPHKTRLGVANSSSNLFASAAKTRKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="59138" PGL_stop="60126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59138" e_stop="59198"/>
            <exon e_start="59277" e_stop="59385"/>
            <exon e_start="59462" e_stop="59521"/>
            <exon e_start="59603" e_stop="59697"/>
            <exon e_start="59792" e_stop="60126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.779" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59138" e_stop="59198" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59199" i_stop="59276" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59277" e_stop="59385" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="59386" i_stop="59461" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59462" e_stop="59521" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.810">
            <gDNA_intron_boundary i_start="59522" i_stop="59602" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59603" e_stop="59697" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.779">
            <gDNA_intron_boundary i_start="59698" i_stop="59791" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="59792" e_stop="60126" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59138" stop="59198"/>
              <exon start="59277" stop="59385"/>
              <exon start="59462" stop="59521"/>
              <exon start="59603" stop="59697"/>
              <exon start="59792" stop="60126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGA : GGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAG : ATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATG : ATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAA : GTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAGTGAGA</gDNA_template>
            <first_frame> R  D  W  R  R  K  K  L  R  *  G  Y  S  R  R  N  Q  S  *  L   : R  I  Q  F  Q  F  L  R  K  N  V  N  L  S  L  R  F  R  N  S  I  C  M  *  I  T  V  L  L  T  E  L  N  L  I  R  R :   L  R  R  K  K  *  C  I  I  G  I  R  R  K  Q  N  V  Q  E  * :   W  K  R  R  R  P  *  N  N  *  G  E  L  W  Y  L  M  L  D  Q  C  L  I  L  I  I  L  S  Y  L  K   : S  L  P  N  M  S  Q  D  Q  A  P  P  S  Y  R  L  L  K  G  K  R  G  G  K  C  S  A  P  M  Q  Q  F  L  V  L  L  P  L  K  *  D  D  D  S  N  P  T  R  *  D  D  D  C  S  R  I  L  E  P  P  P  I  C  F  M  S  N  S  Y  V  I  I  E  I  C  I  I  F  C  S  I  Q  L  A  *  H  N  L  K  *  Q  I  V  L  R  L  C  N  Y  I  I  F  I  L  Y  Y  F  I  S  K  V  R </first_frame>
            <second_frame>  E  I  G  G  G  R  S  *  D  E  V  I  Q  G  A  T  N  L  D  *  :  G  S  N  S  S  S  *  E  R  T  *  T  F  H  *  G  S  G  I  Q  S  A  C  K  S  P  C  C  *  Q  N  *  I  *  *  E   : D  *  G  E  R  N  D  V  *  *  V  S  G  G  S  R  M  C  K  N   : D  G  R  G  E  G  L  K  T  T  K  E  N  F  G  T  S  C  *  T  S  A  *  F  *  S  S  F  P  T  S  K  :  V  F  Q  T  C  H  K  T  K  L  P  Q  A  T  G  Y  *  K  E  R  E  E  E  N  A  L  P  L  C  S  S  F  *  C  C  C  L  S  N  E  M  M  I  Q  I  R  R  D  E  M  M  I  V  Q  E  F  L  N  P  L  L  Y  V  L  C  L  T  V  M  *  *  *  R  S  V  L  F  F  V  A  F  S  *  L  S  I  I  *  N  D  K  *  F  C  A  Y  V  I  I  S  Y  S  Y  Y  I  I  L  Y  Q  K  *   </second_frame>
            <third_frame>   R  L  E  E  E  E  A  K  M  R  L  F  K  A  Q  P  I  L  I  E :   D  P  I  P  V  P  E  K  E  R  K  P  F  T  E  V  Q  E  F  N  L  H  V  N  H  R  A  V  D  R  T  E  F  D  K  K  :  I  K  E  K  E  M  M  Y  N  R  Y  Q  E  E  A  E  C  A  R  M  :  M  E  E  E  K  A  L  K  Q  L  R  R  T  L  V  P  H  A  R  P  V  P  N  F  D  H  P  F  L  P  Q  K :   S  S  K  H  V  T  R  P  S  S  P  K  L  Q  V  I  K  R  K  E  R  R  K  M  L  C  P  Y  A  A  V  S  S  A  A  A  S  Q  M  R  *  *  F  K  S  D  E  M  R  *  *  L  F  K  N  S  *  T  P  S  Y  M  F  Y  V  *  Q  L  C  N  N  R  D  L  Y  Y  F  L  *  H  S  A  S  L  A  *  F  K  M  T  N  S  F  A  P  M  *  L  Y  H  I  H  I  I  L  F  Y  I  K  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59140" stop="59198"/>
                    <exon start="59277" stop="59385"/>
                    <exon start="59462" stop="59521"/>
                    <exon start="59603" stop="59697"/>
                    <exon start="59792" stop="59915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLEEEEAKMRLFKAQPILIEDPIPVPEKERKPFTEVQEFNLHVNHRAVDRTEFDKKIKEKEMMYNRYQEEAECARMMEEEKALKQLRRTLVPHARPVPNFDHPFLPQKSSKHVTRPSSPKLQVIKRKERRKMLCPYAAVSSAAASQMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67257" PGL_stop="59730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62750" e_stop="62708"/>
            <exon e_start="62013" e_stop="61685"/>
            <exon e_start="61566" e_stop="61450"/>
            <exon e_start="61342" e_stop="61177"/>
            <exon e_start="60589" e_stop="60407"/>
            <exon e_start="59753" e_stop="59730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.574" acc_prob="0.998" e_score="0.950"/>
          <exon-intron don_prob="0.897" acc_prob="0.979" e_score="0.960"/>
          <exon-intron don_prob="0.964" acc_prob="0.252" e_score="0.991"/>
          <exon-intron don_prob="0.985" acc_prob="0.744" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.721" e_score="0.956"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="62750" e_stop="62708" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.574" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62707" i_stop="62014" i_length="694"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="62013" e_stop="61685" e_length="329"/>
          </exon>
          <intron i_serial="2" don_prob="0.897" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="61566" e_stop="61450" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.252">
            <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="61342" e_stop="61177" e_length="166"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.744">
            <gDNA_intron_boundary i_start="61176" i_stop="60590" i_length="587"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="60589" e_stop="60407" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.721">
            <gDNA_intron_boundary i_start="60406" i_stop="59754" i_length="653"/>
          </intron>
          <exon e_serial="6" e_score="0.625">
            <gDNA_exon_boundary e_start="59753" e_stop="59730" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62750" stop="62708"/>
              <exon start="62013" stop="61685"/>
              <exon start="61566" stop="61450"/>
              <exon start="61342" stop="61177"/>
              <exon start="60589" stop="60520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62747" stop="62708"/>
              <exon start="62013" stop="61685"/>
              <exon start="61566" stop="61450"/>
              <exon start="61342" stop="61191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61840" stop="61685"/>
              <exon start="61566" stop="61450"/>
              <exon start="61342" stop="61177"/>
              <exon start="60589" stop="60407"/>
              <exon start="59753" stop="59730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCAATGAGGCGTGAATTGTCAGTACTTTACAGCCGTTTCT : ATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTGTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTCATTACATCTTGGGAATGACTATTACGCGTTTGGCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG : ATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATG : GTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAG : GTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTCTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTCTTAATTTTTATGTGCCATA : TATGAGGAAGACAAATAAAAGAAA</gDNA_template>
            <first_frame> E  A  M  R  R  E  L  S  V  L  Y  S  R  F   : Y  G  I  L  L  G  G  L  L  F  M  Y  E  F  H  K  F  L  R  P  I  L  L  L  L  H  S  F  W  L  P  Q  I  V  T  N  V  I  R  D  S  R  K  P  L  H  P  H  Y  I  L  G  M  T  I  T  R  L  A  I  P  L  Y  V  F  G  C  P  H  N  F  M  R  I  E  P  D  K  N  W  C  I  C  L  G  V  F  I  V  L  Q  A  S  I  L  L  L  Q  H  Y  L  G  S  R  W  F  I  P  R  Q  :  I  L  P  E  K  Y  N  Y  Y  R  R  F  D  Q  G  A  N  H  A  T  D  C  V  I  C  M  T  A  I  D  H  T  Q  R  S  N  N  C  M  :  V  T  P  C  D  H  F  F  H  S  G  C  L  Q  R  W  M  D  I  K  M  E  C  P  T  C  R  R  P  L  P  P  A  *  I  N  V  I  S  *  I  H  L  G  R  A  T  D  I  A  R  P  V  *  K   : G  W  R  Q  R  E  L  H  K  K  F  S  V  *  K  L  S  T  D  S  L  D  L  L  Y  I  L  L  I  N  C  L  F  F  S  Y  I  S  H  K  N  N  N  I  I  K  *  F  I  E  F  M  E  Y  F  L  I  F  M  C  H   : I  *  G  R  Q  I  K  E  </first_frame>
            <second_frame>  K  Q  *  G  V  N  C  Q  Y  F  T  A  V  S  :  M  G  S  F  *  A  D  C  C  S  C  M  S  F  T  S  F  C  A  L  F  F  Y  F  Y  T  H  S  G  Y  L  K  L  *  L  M  S  F  V  T  Q  E  N  H  C  T  L  I  T  S  W  E  *  L  L  R  V  W  Q  F  H  Y  M  S  L  A  V  L  T  I  S  C  V  *  S  L  I  R  I  G  A  S  A  W  E  F  L  L  C  C  R  H  Q  F  F  C  C  S  I  T  L  D  L  G  G  S  F  H  V  R :   F  Y  L  R  S  I  T  I  I  E  G  L  I  R  V  Q  I  T  P  L  T  V  L  F  A  *  L  L  L  I  I  L  N  A  Q  I  I  A  W :   *  H  L  V  I  I  S  F  T  L  V  V  C  K  D  G  W  T  *  R  W  S  V  Q  H  A  D  V  L  F  H  P  L  E  *  M  L  F  L  E  F  I  L  V  E  Q  L  T  L  P  D  L  F  R  K  :  V  G  D  R  E  N  Y  I  R  S  F  L  Y  K  S  *  A  Q  I  H  *  T  C  C  I  S  C  *  L  T  V  Y  S  F  L  I  F  H  I  K  T  I  T  L  S  N  N  S  *  N  L  W  N  I  S  *  F  L  C  A  I  :  Y  E  E  D  K  *  K  K </second_frame>
            <third_frame>   S  N  E  A  *  I  V  S  T  L  Q  P  F  L :   W  D  P  F  R  R  T  V  V  H  V  *  V  S  Q  V  S  A  P  Y  S  S  T  F  T  L  I  L  V  T  S  N  C  N  *  C  H  S  *  L  K  K  T  I  A  P  S  L  H  L  G  N  D  Y  Y  A  F  G  N  S  I  I  C  L  W  L  S  S  Q  F  H  A  Y  R  A  *  *  E  L  V  H  L  L  G  S  F  Y  C  A  A  G  I  N  S  S  V  A  A  L  P  W  I  S  V  V  H  S  T  S   : D  F  T  *  E  V  *  L  L  *  K  V  *  S  G  C  K  S  R  H  *  L  C  Y  L  H  D  C  Y  *  S  Y  S  T  L  K  *  L  H   : G  D  T  L  *  S  F  L  S  L  W  L  F  A  K  M  D  G  H  K  D  G  V  S  N  M  P  T  S  S  S  T  R  L  N  K  C  Y  F  L  N  S  S  W  *  S  N  *  H  C  P  T  C  L  E  R :   L  E  T  E  R  I  T  *  E  V  F  C  I  K  V  E  H  R  F  T  R  L  A  V  Y  L  V  D  *  L  S  I  L  F  L  Y  F  T  *  K  Q  *  H  Y  Q  I  I  H  R  I  Y  G  I  F  L  N  F  Y  V  P  Y :   M  R  K  T  N  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62750" stop="62708"/>
                    <exon start="62013" stop="61685"/>
                    <exon start="61566" stop="61450"/>
                    <exon start="61342" stop="61241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAMRRELSVLYSRFYGILLGGLLFMYEFHKFLRPILLLLHSFWLPQIVTNVIRDSRKPLHPHYILGMTITRLAIPLYVFGCPHNFMRIEPDKNWCICLGVFIVLQASILLLQHYLGSRWFIPRQILPEKYNYYRRFDQGANHATDCVICMTAIDHTQRSNNCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67257" e_stop="67152"/>
            <exon e_start="66216" e_stop="66101"/>
            <exon e_start="65670" e_stop="65610"/>
            <exon e_start="64666" e_stop="64600"/>
            <exon e_start="64517" e_stop="64440"/>
            <exon e_start="63818" e_stop="63661"/>
            <exon e_start="63572" e_stop="63513"/>
            <exon e_start="63436" e_stop="63343"/>
            <exon e_start="62875" e_stop="62708"/>
            <exon e_start="62364" e_stop="62252"/>
            <exon e_start="62044" e_stop="61873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.914" e_score="0.979"/>
          <exon-intron don_prob="0.574" acc_prob="0.842" e_score="0.964"/>
          <exon-intron don_prob="0.338" acc_prob="0.000" e_score="0.761"/>
          <exon-only e_score="0.866"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67152" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67151" i_stop="66217" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66216" e_stop="66101" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66100" i_stop="65671" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65670" e_stop="65610" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.759" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65609" i_stop="64667" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64666" e_stop="64600" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64599" i_stop="64518" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64517" e_stop="64440" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64439" i_stop="63819" i_length="621"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63818" e_stop="63661" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.917" acc_prob="0.694">
            <gDNA_intron_boundary i_start="63660" i_stop="63573" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63572" e_stop="63513" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="63512" i_stop="63437" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="63436" e_stop="63343" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.914">
            <gDNA_intron_boundary i_start="63342" i_stop="62876" i_length="467"/>
          </intron>
          <exon e_serial="9" e_score="0.964">
            <gDNA_exon_boundary e_start="62875" e_stop="62708" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="0.574" acc_prob="0.842">
            <gDNA_intron_boundary i_start="62707" i_stop="62365" i_length="343"/>
          </intron>
          <exon e_serial="10" e_score="0.761">
            <gDNA_exon_boundary e_start="62364" e_stop="62252" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="0.338" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62251" i_stop="62045" i_length="207"/>
          </intron>
          <exon e_serial="11" e_score="0.866">
            <gDNA_exon_boundary e_start="62044" e_stop="61873" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67257" stop="67152"/>
              <exon start="66216" stop="66101"/>
              <exon start="65670" stop="65610"/>
              <exon start="64666" stop="64600"/>
              <exon start="64517" stop="64440"/>
              <exon start="63818" stop="63661"/>
              <exon start="63572" stop="63513"/>
              <exon start="63436" stop="63343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63818" stop="63661"/>
              <exon start="63572" stop="63513"/>
              <exon start="63436" stop="63343"/>
              <exon start="62875" stop="62708"/>
              <exon start="62364" stop="62252"/>
              <exon start="62044" stop="61873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAG : GGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAG : TGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTG : CTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACT : CACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATG : ATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT : ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA : GGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGGGATACTTGTTG : AATCCCTTTTCAATGCTTTTGCAACTGCTGCATTCTTCAAGTTTGTTGTGTTCTCGATCTTTGAGATGAGATATCTACTTGCTATATGGAAGGCAAATAGGCCCATGAATAGCGTAGAGGGTTGGGAAGCAATGAGGCGTGAATTGTCAGTACTTTACAGCCGTTTCT : AATGATCCTGAGAAGTCTTCAGTGTCTGAACTGTAGAAAAGAAAGCAACAAGGGAAAAATAACAGTGTTCAACATAGAACGAGCTTTGCTCTTAGACAGGCTCCAAAGAAAAT : TTACCTTTTCTTTTTTCTGAATCTTTTGCAGATGGGATCCTTTTAGGCGGACTGTTGTTCATGTATGAGTTTCACAAGTTTCTGCGCCCTATTCTTCTACTTTTACACTCATTCTGGTTACCTCAAATTGTAACTAATGTCATTCGTGACTCAAGAAAACCATTGCACCCTC</gDNA_template>
            <first_frame> N  K  *  L  F  Q  V  S  *  F  *  E  V  Q  W  Q  L  G  P  *  I  D  K  *  S  N  K  N  N  W  C  T  L  Y  S   : G  C  N  N  F  P  *  C  V  *  Q  *  T  W  S  W  C  C  T  N  K  G  R  R  C  I  Y  M  A  I  *  T  T  S  N  G  S  L  Q  :  W  Q  R  W  *  V  W  T  G  R  R  L  S  I  I  K  S  I  S  L   : A  W  S  F  L  V  P  D  I  P  G  V  F  S  R  *  D  L  E  K  E  T  L :   T  V  L  R  D  G  E  K  L  *  Y  R  N  C  C  T  N  C  S  C  L  I  L  L  K  * :   C  S  S  *  P  L  S  T  R  R  I  D  R  E  P  F  S  G  C  *  R  G  L  F  L  T  D  A  F  E  C  Y  F  C  Q  Y  R  G  L  L  Q  Q  S  G  E  L  H  I  D  G  H  I   : Y  I  F  S  A  S  A  P  S  D  S  T  N  G  T  *  Q  H  P  I   : R  S  C  E  S  F  N  S  D  D  W  T  T  G  Y  H  G  C  L  S  L  S  F  A  S  D  R  R  D  T  C  * :   I  P  F  Q  C  F  C  N  C  C  I  L  Q  V  C  C  V  L  D  L  *  D  E  I  S  T  C  Y  M  E  G  K  *  A  H  E  *  R  R  G  L  G  S  N  E  A  *  I  V  S  T  L  Q  P  F  L :   M  I  L  R  S  L  Q  C  L  N  C  R  K  E  S  N  K  G  K  I  T  V  F  N  I  E  R  A  L  L  L  D  R  L  Q  R  K   : F  T  F  S  F  F  *  I  F  C  R  W  D  P  F  R  R  T  V  V  H  V  *  V  S  Q  V  S  A  P  Y  S  S  T  F  T  L  I  L  V  T  S  N  C  N  *  C  H  S  *  L  K  K  T  I  A  P   </first_frame>
            <second_frame>  T  N  S  S  S  R  F  P  D  F  R  K  S  N  G  N  S  V  L  E  L  I  S  N  P  T  K  I  T  G  V  H  Y  I  Q  :  G  A  I  I  F  H  D  V  F  D  N  E  H  G  V  G  A  A  Q  I  R  V  E  G  V  Y  I  W  P  F  R  Q  L  R  M  V  A  Y  S :   G  K  D  G  E  F  G  Q  E  D  D  Y  L  L  S  N  P  Y  H  L  :  L  G  V  F  S  S  Q  I  F  Q  E  S  S  R  D  K  I  W  K  K  K  H   : S  P  F  Y  E  M  E  K  N  C  N  I  E  I  A  A  Q  I  A  R  V  S  S  S  S  N   : D  A  A  R  D  H  Y  Q  L  E  G  L  I  E  S  P  S  V  D  A  D  G  D  C  F  S  P  M  L  L  N  A  T  S  V  N  I  E  V  Y  Y  N  K  A  V  N  Y  T  L  M  V  T  F  :  I  S  F  L  Q  V  L  L  L  I  R  Q  M  E  H  S  N  T  Q  S  :  G  A  A  K  V  S  I  L  M  I  G  Q  Q  A  I  M  D  A  Y  L  C  L  L  H  L  T  A  G  I  L  V   : E  S  L  F  N  A  F  A  T  A  A  F  F  K  F  V  V  F  S  I  F  E  M  R  Y  L  L  A  I  W  K  A  N  R  P  M  N  S  V  E  G  W  E  A  M  R  R  E  L  S  V  L  Y  S  R  F   : *  *  S  *  E  V  F  S  V  *  T  V  E  K  K  A  T  R  E  K  *  Q  C  S  T  *  N  E  L  C  S  *  T  G  S  K  E  N  :  L  P  F  L  F  S  E  S  F  A  D  G  I  L  L  G  G  L  L  F  M  Y  E  F  H  K  F  L  R  P  I  L  L  L  L  H  S  F  W  L  P  Q  I  V  T  N  V  I  R  D  S  R  K  P  L  H  P  </second_frame>
            <third_frame>   Q  I  A  L  P  G  F  L  I  L  G  S  P  M  A  T  R  S  L  N  *  *  V  I  Q  Q  K  *  L  V  Y  I  I  F  R :   V  Q  *  F  S  M  M  C  L  T  M  N  M  E  L  V  L  H  K  *  G  *  K  V  Y  I  Y  G  H  L  D  N  F  E  W  *  L  T   : V  A  K  M  V  S  L  D  R  K  T  I  I  Y  Y  Q  I  H  I  T  C :   L  E  F  S  R  P  R  Y  S  R  S  L  L  E  I  R  F  G  K  R  N  T  :  H  R  F  T  R  W  R  K  I  V  I  *  K  L  L  H  K  L  L  V  S  H  P  P  Q  M  :  M  Q  L  V  T  I  I  N  *  K  D  *  *  R  A  L  Q  W  M  L  T  G  T  V  S  H  R  C  F  *  M  L  L  L  S  I  *  R  F  T  T  T  K  R  *  T  T  H  *  W  S  H  L :   Y  L  F  C  K  C  S  F  *  F  D  K  W  N  I  A  T  P  N  Q :   E  L  R  K  F  Q  F  *  *  L  D  N  R  L  S  W  M  L  I  F  V  F  C  I  *  P  Q  G  Y  L  L  :  N  P  F  S  M  L  L  Q  L  L  H  S  S  S  L  L  C  S  R  S  L  R  *  D  I  Y  L  L  Y  G  R  Q  I  G  P  *  I  A  *  R  V  G  K  Q  *  G  V  N  C  Q  Y  F  T  A  V  S  :  N  D  P  E  K  S  S  V  S  E  L  *  K  R  K  Q  Q  G  K  N  N  S  V  Q  H  R  T  S  F  A  L  R  Q  A  P  K  K  I :   Y  L  F  F  F  L  N  L  L  Q  M  G  S  F  *  A  D  C  C  S  C  M  S  F  T  S  F  C  A  L  F  F  Y  F  Y  T  H  S  G  Y  L  K  L  *  L  M  S  F  V  T  Q  E  N  H  C  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67256" stop="67152"/>
                    <exon start="66216" stop="66101"/>
                    <exon start="65670" stop="65610"/>
                    <exon start="64666" stop="64600"/>
                    <exon start="64517" stop="64440"/>
                    <exon start="63818" stop="63661"/>
                    <exon start="63572" stop="63513"/>
                    <exon start="63436" stop="63343"/>
                    <exon start="62875" stop="62708"/>
                    <exon start="62364" stop="62363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSSSRFPDFRKSNGNSVLELISNPTKITGVHYIQGAIIFHDVFDNEHGVGAAQIRVEGVYIWPFRQLRMVAYSGKDGEFGQEDDYLLSNPYHLLGVFSSQIFQESSRDKIWKKKHSPFYEMEKNCNIEIAAQIARVSSSSNDAARDHYQLEGLIESPSVDADGDCFSPMLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPMNSVEGWEAMRRELSVLYSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69287" PGL_stop="67561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69287" e_stop="68720"/>
            <exon e_start="67629" e_stop="67561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69287" e_stop="68720" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="67629" e_stop="67561" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69287" stop="68775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69262" stop="68720"/>
              <exon start="67629" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69200" stop="68720"/>
              <exon start="67629" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69200" stop="68720"/>
              <exon start="67629" stop="67586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG : TGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</gDNA_template>
            <first_frame> N  L  G  E  D  *  C  *  M  I  F  S  L  F  F  Y  F  L  Q  N  *  K  H  P  N  Y  V  I  Y  R  L  Y  N  C  F  *  I  K  K  Y  K  W  S  F  L  V  V  E  L  T  R  E  G  I  L  G  E  P  Q  I  N  K  T  N  D  S  V  Y  V  E  L  S  F  S  L  K  L  I  F  V  V  E  V  V  V  L  C  C  L  T  S  I  *  A  T  P  F  L  S  F  S  *  S  C  L  F  F  L  G  N  C  N  C  N  G  L  C  F  F  I  C  V  A  Q  E  L  L  G  S  E  E  F  E  L  I  L  N  G  Y  G  K  K  I  I  F  F  E  V  *  E  E  K  V  W  S  F  A  *  S  S  F  *  F  M  V  H  P  *  R  D  L  P  S  N  G  C  Q  A  S  Q  R  K  I  P  F  V  G  R  *   : V  A  S  G  K  K  G  *  E  *  I  G  A  F  F  C  L  E  Y  N  R  N  L  </first_frame>
            <second_frame>  I  *  E  K  T  N  V  K  *  S  L  A  Y  F  F  T  F  C  R  T  E  N  T  P  T  M  L  F  I  D  C  I  I  V  F  E  *  R  N  T  S  G  V  F  W  L  L  N  *  L  G  K  G  F  L  V  N  H  K  S  T  K  P  M  I  L  F  M  L  S  F  H  F  L  *  S  *  F  L  L  L  R  L  L  F  Y  V  V  *  L  Q  F  K  Q  P  L  F  F  L  S  L  K  V  V  S  F  F  W  E  I  V  T  V  M  D  F  V  S  S  S  V  L  L  K  N  C  L  E  V  K  N  L  N  *  S  *  M  G  M  A  K  R  L  Y  F  L  R  F  K  R  K  K  Y  G  V  L  L  R  V  L  F  S  L  W  F  I  L  E  G  I  C  P  V  M  G  V  R  P  L  R  E  R  Y  R  S  W  G  D  E  :  W  L  L  V  R  K  D  E  N  E  L  G  P  F  S  A  W  N  I  T  G  T  Y </second_frame>
            <third_frame>   F  R  R  R  L  M  L  N  D  L  *  L  I  F  L  L  S  A  E  L  K  T  P  Q  L  C  Y  L  *  I  V  *  L  F  L  N  K  E  I  Q  V  E  F  S  G  C  *  I  D  *  G  R  D  S  W  *  T  T  N  Q  Q  N  Q  *  F  C  L  C  *  A  F  I  F  F  E  V  D  F  C  C  *  G  C  C  F  M  L  F  D  F  N  L  S  N  P  F  S  F  F  L  L  K  L  S  L  F  F  G  K  L  *  L  *  W  T  L  F  L  H  L  C  C  S  R  I  A  W  K  *  R  I  *  I  D  L  E  W  V  W  Q  K  D  Y  I  F  *  G  L  R  G  K  S  M  E  F  C  L  E  F  F  L  V  Y  G  S  S  L  K  G  F  A  Q  *  W  V  S  G  L  S  E  K  D  T  V  R  G  E  M  S :   G  F  W  *  E  R  M  R  M  N  W  G  L  F  L  L  G  I  *  Q  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68878" stop="68720"/>
                    <exon start="67629" stop="67561"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGMAKRLYFLRFKRKKYGVLLRVLFSLWFILEGICPVMGVRPLRERYRSWGDEWLLVRKDENELGPFSAWNITGTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76612" PGL_stop="75904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76612" e_stop="75904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76612" e_stop="75904" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76612" stop="75904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76592" stop="75993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76562" stop="76017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</gDNA_template>
            <first_frame> L  K  T  L  I  H  H  F  I  F  I  V  R  W  L  I  N  L  I  S  Y  R  V  G  Q  L  K  R  K  T  L  P  S  Q  T  *  S  Q  R  L  L  I  K  D  R  E  I  S  T  F  I  A  K  T  R  *  I  G  A  L  P  C  F  F  C  V  Q  L  W  L  S  L  G  A  L  G  T  T  *  G  A  V  D  L  L  M  F  V  Y  L  Q  K  V  I  K  K  M  N  Q  I  T  Q  *  L  L  M  Q  R  D  I  Q  A  K  S  *  R  N  S  P  Q  I  S  P  I  P  I  *  L  P  V  V  D  L  A  E  F  I  *  R  T  S  L  I  Y  L  P  G  L  *  K  S  W  T  A  A  A  S  V  S  M  E  C  T  S  K  N  *  I  S  *  F  K  S  N  T  T  T  *  L  N  F  L  I  T  V  K  I  M  N  S  E  T  C  S  C  L  S  M  S  Q  M  V  L  Y  R  T  N  S  T  K  T  E  I  G  Q  F  F  R  G  E  T  E  W  V  W  H  F  N  L  L  K  L  L  S  I  Y  </first_frame>
            <second_frame>  *  K  H  S  Y  T  I  S  F  S  L  F  V  G  *  L  I  *  F  H  I  E  *  A  N  *  N  E  K  L  S  L  L  R  L  E  V  R  D  F  *  L  R  I  E  R  Y  Q  R  S  *  Q  K  H  V  K  L  V  L  C  L  V  F  F  V  S  N  Y  G  F  P  *  V  L  W  V  Q  R  K  A  R  W  T  Y  *  C  S  C  I  C  R  R  *  *  R  R  *  I  R  *  H  N  D  C  *  C  N  E  I  Y  K  P  R  V  E  E  I  H  R  K  F  L  Q  F  Q  F  N  C  L  W  W  I  *  Q  S  L  F  S  E  L  P  *  F  I  S  Q  G  C  K  N  H  G  Q  Q  Q  R  A  S  Q  W  N  V  Q  A  R  I  R  Y  L  D  S  N  Q  T  R  Q  H  S  *  T  F  *  S  L  *  R  *  *  I  R  K  H  A  R  V  *  V  C  L  K  W  Y  S  T  G  Q  T  P  R  K  Q  R  *  D  N  S  F  V  E  K  P  N  G  C  G  I  S  T  C  S  S  Y  *  V  S  T </second_frame>
            <third_frame>   K  N  T  H  T  P  F  H  F  H  C  S  L  A  D  *  F  N  F  I  S  S  R  P  I  K  T  K  N  S  P  F  S  D  L  K  S  E  T  S  D  *  G  S  R  D  I  N  V  H  S  K  N  T  L  N  W  C  S  A  L  F  F  L  C  P  I  M  A  F  L  R  C  F  G  Y  N  V  R  R  G  G  L  T  D  V  R  V  F  A  E  G  D  K  E  D  E  S  D  N  T  M  I  A  D  A  T  R  Y  T  S  Q  E  L  K  K  F  T  A  N  F  S  N  S  N  L  I  A  C  G  G  F  S  R  V  Y  L  A  N  F  P  D  L  S  P  R  A  V  K  I  M  D  S  S  S  E  R  L  N  G  M  Y  K  Q  E  L  D  I  L  I  Q  I  K  H  D  N  I  V  K  L  F  D  H  C  E  D  N  E  F  G  N  M  L  V  F  E  Y  V  S  N  G  T  L  Q  D  K  L  H  E  N  R  D  R  T  I  L  S  W  R  N  R  M  G  V  A  F  Q  L  A  Q  A  I  E  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76484" stop="75906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSRDINVHSKNTLNWCSALFFLCPIMAFLRCFGYNVRRGGLTDVRVFAEGDKEDESDNTMIADATRYTSQELKKFTANFSNSNLIACGGFSRVYLANFPDLSPRAVKIMDSSSERLNGMYKQELDILIQIKHDNIVKLFDHCEDNEFGNMLVFEYVSNGTLQDKLHENRDRTILSWRNRMGVAFQLAQAIEYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85854" PGL_stop="84913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85854" e_stop="84913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="85854" e_stop="84913" e_length="942"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85854" stop="85060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85787" stop="85324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85787" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85783" stop="85394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85764" stop="85263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85531" stop="85343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85461" stop="84913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85461" stop="84961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTTTGTTAACGAAAATGATTGCATAAAAGTTGAAATCTTATGCAAAAAGCTCATAAAGCCATCTTCACCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTTTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</gDNA_template>
            <first_frame> R  F  C  *  R  K  *  L  H  K  S  *  N  L  M  Q  K  A  H  K  A  I  F  T  Y  T  L  S  E  S  T  L  Q  A  L  F  L  *  S  N  C  *  E  R  A  H  S  C  C  S  F  L  S  L  *  *  Y  *  *  P  H  Y  R  *  T  S  *  E  I  P  F  *  C  I  N  S  C  L  S  S  S  R  K  V  *  R  Q  R  *  M  F  D  S  L  S  *  S  R  C  F  L  Y  Q  S  Q  G  Q  L  *  A  W  *  F  L  R  E  N  T  Q  G  F  E  C  C  N  F  I  W  A  T  *  K  *  E  H  G  S  K  *  F  Y  G  I  A  N  C  D  Y  S  S  N  *  I  *  M  W  W  P  S  F  I  I  Q  C  F  T  P  C  N  G  W  F  H  R  F  A  I  S  I  W  L  G  K  S  V  *  I  G  N  S  H  R  *  D  S  F  P  K  L  Q  F  R  *  Y  F  P  N  K  R  Y  I  S  S  F  Q  L  S  R  R  S  K  *  R  R  K  Y  C  C  *  E  I  R  C  S  *  S  C  S  I  K  A  Q  K  T  M  H  *  *  I  R  R  S  F  D  F  S  T  F  K  G  *  N  S  Y  S  N  P  M  E  G  F  Y  P  R  F  S  S  *  K  W  V  C  *  T  F  S  N  G  L  P  I  E  F  T  L  *  I  I  F  T  S  S  K  N  L  Y  G  K  F  Q  N  R  C  S </first_frame>
            <second_frame>  G  F  V  N  E  N  D  C  I  K  V  E  I  L  C  K  K  L  I  K  P  S  S  P  T  P  S  Q  N  Q  R  Y  K  L  S  F  F  D  Q  I  A  E  R  E  H  I  P  V  V  L  F  Y  P  Y  N  N  I  N  S  H  T  I  D  E  R  L  E  K  S  L  S  D  V  L  T  H  V  Y  P  A  A  G  R  Y  D  D  N  A  E  C  S  I  L  C  L  D  Q  G  V  S  Y  T  K  A  K  V  N  C  K  L  G  N  F  L  E  K  T  R  K  D  L  S  V  A  T  L  F  G  P  H  E  N  K  N  M  D  Q  N  N  F  M  V  S  P  I  V  I  I  Q  V  T  K  F  E  C  G  G  L  A  L  S  F  S  V  S  H  P  A  M  D  G  F  T  G  L  Q  F  L  F  G  W  G  K  V  C  R  L  G  T  P  I  D  K  I  H  F  L  S  F  N  L  G  N  I  F  P  T  R  D  T  S  A  L  F  N  S  A  D  V  V  N  R  E  E  N  I  V  V  K  R  F  V  V  R  E  A  A  L  S  R  L  K  K  Q  C  I  D  E  S  G  G  A  L  T  F  Q  P  S  R  V  E  I  V  T  A  I  L  W  R  A  F  I  R  A  S  A  A  R  N  G  F  V  R  P  S  L  M  D  F  P  L  N  L  R  S  K  S  S  L  P  Q  V  K  T  S  M  G  N  F  R  I  D  V   </second_frame>
            <third_frame>   V  L  L  T  K  M  I  A  *  K  L  K  S  Y  A  K  S  S  *  S  H  L  H  L  H  P  L  R  I  N  V  T  S  S  L  S  L  I  K  L  L  R  E  S  T  F  L  L  F  F  S  I  L  I  I  I  L  I  A  T  L  S  M  N  V  L  R  N  P  F  L  M  Y  *  L  M  F  I  Q  Q  Q  E  G  M  T  T  T  L  N  V  R  F  S  V  L  I  K  V  F  P  I  P  K  P  R  S  I  V  S  L  V  I  S  *  R  K  H  A  R  I  *  V  L  Q  L  Y  L  G  H  M  K  I  R  T  W  I  K  I  I  L  W  Y  R  Q  L  *  L  F  K  *  L  N  L  N  V  V  A  *  L  Y  H  S  V  F  H  T  L  Q  W  M  V  S  Q  V  C  N  F  Y  L  V  G  E  K  C  V  D  W  E  L  P  S  I  R  F  I  S  *  A  S  I  *  V  I  F  S  Q  Q  E  I  H  Q  L  F  S  T  Q  P  T  *  *  I  E  K  K  I  L  L  L  R  D  S  L  F  V  K  L  L  Y  Q  G  S  K  N  N  A  L  M  N  Q  A  E  L  *  L  F  N  L  Q  G  L  K  *  L  Q  Q  S  Y  G  G  L  L  S  A  L  Q  Q  L  E  M  G  L  L  D  L  L  *  W  T  S  H  *  I  Y  A  L  N  H  L  Y  L  K  *  K  P  L  W  E  I  S  E  S  M  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85853" stop="84915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFVNENDCIKVEILCKKLIKPSSPTPSQNQRYKLSFFDQIAEREHIPVVLFYPYNNINSHTIDERLEKSLSDVLTHVYPAAGRYDDNAECSILCLDQGVSYTKAKVNCKLGNFLEKTRKDLSVATLFGPHENKNMDQNNFMVSPIVIIQVTKFECGGLALSFSVSHPAMDGFTGLQFLFGWGKVCRLGTPIDKIHFLSFNLGNIFPTRDTSALFNSADVVNREENIVVKRFVVREAALSRLKKQCIDESGGALTFQPSRVEIVTAILWRAFIRASAARNGFVRPSLMDFPLNLRSKSSLPQVKTSMGNFRIDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96290" PGL_stop="99770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96290" e_stop="97038"/>
            <exon e_start="97647" e_stop="97740"/>
            <exon e_start="97819" e_stop="97852"/>
            <exon e_start="97952" e_stop="98006"/>
            <exon e_start="98799" e_stop="98882"/>
            <exon e_start="98964" e_stop="99251"/>
            <exon e_start="99358" e_stop="99770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.440" e_score="0.999"/>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="96290" e_stop="97038" e_length="749"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.440">
            <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97647" e_stop="97740" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97819" e_stop="97852" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97952" e_stop="98006" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98799" e_stop="98882" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98964" e_stop="99251" e_length="288"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="99358" e_stop="99770" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96290" stop="97038"/>
              <exon start="97647" stop="97706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96290" stop="96504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96371" stop="96886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96371" stop="96880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96374" stop="96980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="97002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="96978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="96720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96494" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96494" stop="97015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96502" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="97958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96502" stop="97038"/>
              <exon start="97647" stop="97739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96589" stop="97038"/>
              <exon start="97647" stop="97674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96678" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96707" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97962" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99251"/>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99570" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539481" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG : GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</gDNA_template>
            <first_frame> K  Y  F  L  R  *  Q  S  N  K  K  E  L  I  F  L  L  I  Q  S  I  P  K  Q  S  V  K  M  N  E  P  N  L  N  F  K  L  *  K  F  S  N  L  F  Y  I  R  F  T  P  I  S  V  *  R  W  S  M  S  D  N  R  N  S  G  I  I  A  G  I  F  I  S  *  E  K  K  C  R  L  L  C  Q  H  Q  L  A  V  T  S  I  A  Q  E  E  E  D  L  Y  T  I  I  N  M  T  P  P  K  I  T  P  F  L  L  H  Q  L  N  H  F  V  F  Q  A  P  I  C  L  F  N  H  K  I  L  F  C  I  E  N  P  F  H  *  Y  P  E  D  S  F  C  V  Q  I  R  Q  L  P  L  L  L  M  V  M  T  T  R  I  K  A  L  G  I  G  S  K  V  L  G  K  R  F  L  F  C  F  P  C  G  *  L  W  V  A  *  L  G  C  L  N  L  A  R  T  I  G  S  N  L  N  G  L  *  W  A  L  H  S  L  C  L  V  W  E  *  L  L  L  S  M  T  F  V  V  L  *  R  C  L  K  S  C  S  A  D  S  S  F  S  I  R :   *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  </first_frame>
            <second_frame>  N  I  S  F  D  N  N  Q  I  R  K  S  L  Y  F  C  *  F  N  Q  F  Q  N  K  V  S  R  *  M  S  P  I  *  I  L  N  C  K  N  F  Q  T  Y  S  T  S  A  S  P  R  L  A  Y  N  D  G  R  *  V  T  T  G  T  V  A  L  L  L  E  Y  S  S  A  R  R  K  N  A  G  S  C  V  S  T  N  *  L  L  H  Q  L  H  K  K  K  K  I  Y  T  Q  *  S  I  *  H  L  Q  R  L  P  L  F  F  F  T  N  *  I  T  L  F  F  K  H  P  F  A  F  S  I  T  K  S  C  S  V  S  K  T  H  F  I  N  I  Q  R  T  A  S  V  F  K  F  V  N  C  H  Y  C  *  W  *  *  Q  Q  E  *  K  L  W  G  L  D  P  K  C  W  G  N  D  F  C  F  V  S  L  V  G  S  F  G  L  L  D  W  A  A  *  T  *  L  V  Q  L  G  Q  T  S  M  D  C  D  G  H  Y  T  H  Y  A  W  Y  G  N  D  S  Y  F  R  *  P  S  W  C  F  S  D  A  *  R  A  V  L  R  I  H  P  S  V  F   : G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I </second_frame>
            <third_frame>   I  F  P  S  I  T  I  K  *  E  R  A  Y  I  F  V  N  S  I  N  S  K  T  K  C  Q  D  E  *  A  Q  F  K  F  *  I  V  K  I  F  K  L  I  L  H  P  L  H  P  D  *  R  I  T  M  V  D  E  *  Q  P  E  Q  W  H  Y  C  W  N  I  H  Q  L  G  E  K  M  Q  A  L  V  S  A  P  T  S  C  Y  I  N  C  T  R  R  R  R  F  I  H  N  N  Q  Y  D  T  S  K  D  Y  P  F  S  S  S  P  T  K  S  L  C  F  S  S  T  H  L  P  F  Q  S  Q  N  L  V  L  Y  R  K  P  I  S  L  I  S  R  G  Q  L  L  C  S  N  S  S  T  A  I  T  A  D  G  D  D  N  K  N  K  S  F  G  D  W  I  Q  S  V  G  E  T  I  S  V  L  F  P  L  W  V  A  L  G  C  L  I  G  L  L  K  P  S  S  Y  N  W  V  K  P  Q  W  T  V  M  G  I  T  L  T  M  L  G  M  G  M  T  L  T  F  D  D  L  R  G  A  L  A  M  P  K  E  L  F  C  G  F  I  L  Q  Y  S  :  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96469" stop="97038"/>
                    <exon start="97647" stop="97740"/>
                    <exon start="97819" stop="97852"/>
                    <exon start="97952" stop="98006"/>
                    <exon start="98799" stop="98882"/>
                    <exon start="98964" stop="99251"/>
                    <exon start="99358" stop="99510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPEQWHYCWNIHQLGEKMQALVSAPTSCYINCTRRRRFIHNNQYDTSKDYPFSSSPTKSLCFSSTHLPFQSQNLVLYRKPISLISRGQLLCSNSSTAITADGDDNKNKSFGDWIQSVGETISVLFPLWVALGCLIGLLKPSSYNWVKPQWTVMGITLTMLGMGMTLTFDDLRGALAMPKELFCGFILQYSVMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96380" e_stop="96399"/>
            <exon e_start="96614" e_stop="97038"/>
            <exon e_start="97647" e_stop="97740"/>
            <exon e_start="97819" e_stop="97852"/>
            <exon e_start="97952" e_stop="98006"/>
            <exon e_start="98799" e_stop="98882"/>
            <exon e_start="98964" e_stop="99251"/>
            <exon e_start="99358" e_stop="99770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.728" acc_prob="0.000" e_score="0.550"/>
          <exon-intron don_prob="0.978" acc_prob="0.440" e_score="0.922"/>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.550">
            <gDNA_exon_boundary e_start="96380" e_stop="96399" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.728" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96400" i_stop="96613" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="96614" e_stop="97038" e_length="425"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.440">
            <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97647" e_stop="97740" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97819" e_stop="97852" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97952" e_stop="98006" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98799" e_stop="98882" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98964" e_stop="99251" e_length="288"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="99358" e_stop="99770" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96380" stop="96399"/>
              <exon start="96614" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96678" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96707" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97962" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99251"/>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99570" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539481" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATTTAAATTTTAAATT : ATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG : GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</gDNA_template>
            <first_frame> P  N  L  N  F  K  L :   L  P  L  F  F  F  T  N  *  I  T  L  F  F  K  H  P  F  A  F  S  I  T  K  S  C  S  V  S  K  T  H  F  I  N  I  Q  R  T  A  S  V  F  K  F  V  N  C  H  Y  C  *  W  *  *  Q  Q  E  *  K  L  W  G  L  D  P  K  C  W  G  N  D  F  C  F  V  S  L  V  G  S  F  G  L  L  D  W  A  A  *  T  *  L  V  Q  L  G  Q  T  S  M  D  C  D  G  H  Y  T  H  Y  A  W  Y  G  N  D  S  Y  F  R  *  P  S  W  C  F  S  D  A  *  R  A  V  L  R  I  H  P  S  V  F   : G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I </first_frame>
            <second_frame>  P  I  *  I  L  N   : Y  Y  P  F  S  S  S  P  T  K  S  L  C  F  S  S  T  H  L  P  F  Q  S  Q  N  L  V  L  Y  R  K  P  I  S  L  I  S  R  G  Q  L  L  C  S  N  S  S  T  A  I  T  A  D  G  D  D  N  K  N  K  S  F  G  D  W  I  Q  S  V  G  E  T  I  S  V  L  F  P  L  W  V  A  L  G  C  L  I  G  L  L  K  P  S  S  Y  N  W  V  K  P  Q  W  T  V  M  G  I  T  L  T  M  L  G  M  G  M  T  L  T  F  D  D  L  R  G  A  L  A  M  P  K  E  L  F  C  G  F  I  L  Q  Y  S  :  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V   </second_frame>
            <third_frame>   Q  F  K  F  *  I  :  I  T  P  F  L  L  H  Q  L  N  H  F  V  F  Q  A  P  I  C  L  F  N  H  K  I  L  F  C  I  E  N  P  F  H  *  Y  P  E  D  S  F  C  V  Q  I  R  Q  L  P  L  L  L  M  V  M  T  T  R  I  K  A  L  G  I  G  S  K  V  L  G  K  R  F  L  F  C  F  P  C  G  *  L  W  V  A  *  L  G  C  L  N  L  A  R  T  I  G  S  N  L  N  G  L  *  W  A  L  H  S  L  C  L  V  W  E  *  L  L  L  S  M  T  F  V  V  L  *  R  C  L  K  S  C  S  A  D  S  S  F  S  I  R :   *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96390" stop="96399"/>
                    <exon start="96614" stop="97038"/>
                    <exon start="97647" stop="97740"/>
                    <exon start="97819" stop="97852"/>
                    <exon start="97952" stop="98006"/>
                    <exon start="98799" stop="98882"/>
                    <exon start="98964" stop="99251"/>
                    <exon start="99358" stop="99510"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNYYPFSSSPTKSLCFSSTHLPFQSQNLVLYRKPISLISRGQLLCSNSSTAITADGDDNKNKSFGDWIQSVGETISVLFPLWVALGCLIGLLKPSSYNWVKPQWTVMGITLTMLGMGMTLTFDDLRGALAMPKELFCGFILQYSVMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97636" e_stop="97740"/>
            <exon e_start="97819" e_stop="97852"/>
            <exon e_start="97952" e_stop="98006"/>
            <exon e_start="98799" e_stop="98882"/>
            <exon e_start="98964" e_stop="99251"/>
            <exon e_start="99358" e_stop="99770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="0.952"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="97636" e_stop="97740" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97819" e_stop="97852" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97952" e_stop="98006" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98799" e_stop="98882" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98964" e_stop="99251" e_length="288"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="99358" e_stop="99770" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97636" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97962" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99251"/>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99570" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539481" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</gDNA_template>
            <first_frame> F  W  Y  R  *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  </first_frame>
            <second_frame>  S  G  I  G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I </second_frame>
            <third_frame>   L  V  *  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97647" stop="97740"/>
                    <exon start="97819" stop="97852"/>
                    <exon start="97952" stop="98006"/>
                    <exon start="98799" stop="98882"/>
                    <exon start="98964" stop="99251"/>
                    <exon start="99358" stop="99510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="104326" PGL_stop="104856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104326" e_stop="104856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="104326" e_stop="104856" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104326" stop="104856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104326" stop="104856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</gDNA_template>
            <first_frame> F  F  L  S  P  Y  P  K  S  I  K  E  K  N  *  H  K  K  K  N  *  W  L  V  I  M  N  L  N  Y  Q  I  I  I  V  I  E  V  T  M  T  W  T  R  T  R  M  S  K  I  T  *  K  R  R  K  K  K  M  I  I  Q  M  T  T  T  F  V  V  V  V  V  E  E  E  D  *  Q  T  S  F  R  G  K  S  *  T  L  E  R  L  G  F  K  N  G  I  E  Y  F  Y  *  Y  V  P  R  G  Y  L  W  I  L  S  F  S  T  L  S  L  S  A  R  L  A  C  A  F  L  S  M  V  G  L  R  *  R  S  P  F  F  D  A  *  P  M  R  C  I  Y  G  T  C  G  Y  D  S  R  C  I  N  Y  V  L  T  M  K  K  W  M  K  I  K  L  L  V  V  V </first_frame>
            <second_frame>  F  F  Y  L  H  I  P  N  P  *  K  K  K  T  S  T  K  K  K  I  N  G  *  S  S  *  T  *  T  I  K  *  L  *  *  S  K  *  R  *  H  G  R  G  R  G  *  A  R  *  H  R  R  G  G  K  R  R  *  *  F  K  *  L  Q  H  L  *  *  S  *  S  R  R  R  I  D  R  L  L  F  V  E  S  H  R  P  *  S  A  L  G  S  R  M  E  S  S  I  F  I  S  M  C  H  G  A  I  C  G  S  S  L  F  L  L  S  L  Y  Q  R  D  L  H  V  P  F  Y  R  W  L  V  C  G  N  G  H  R  S  S  M  H  D  R  C  D  A  F  M  E  H  V  D  T  I  Q  D  A  *  I  T  S  L  Q  *  K  N  G  *  K  S  N  Y  *  *  *   </second_frame>
            <third_frame>   F  F  I  S  I  S  Q  I  H  K  R  K  K  L  A  Q  K  K  K  L  M  A  S  H  H  E  L  E  L  S  N  N  Y  S  D  R  S  D  D  D  M  D  E  D  E  D  E  Q  D  N  I  E  E  E  E  K  E  D  D  N  S  N  D  Y  N  I  C  S  S  R  S  R  G  G  G  L  T  D  F  F  S  W  K  V  I  D  P  R  A  P  W  V  Q  E  W  N  R  V  F  L  L  V  C  A  T  G  L  F  V  D  P  L  F  F  Y  S  L  S  I  S  E  T  C  M  C  L  F  I  D  G  W  F  A  V  T  V  T  V  L  R  C  M  T  D  A  M  H  L  W  N  M  W  I  R  F  K  M  H  K  L  R  P  Y  N  E  K  M  D  E  N  Q  I  T  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104328" stop="104855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFISISQIHKRKKLAQKKKLMASHHELELSNNYSDRSDDDMDEDEDEQDNIEEEEKEDDNSNDYNICSSRSRGGGLTDFFSWKVIDPRAPWVQEWNRVFLLVCATGLFVDPLFFYSLSISETCMCLFIDGWFAVTVTVLRCMTDAMHLWNMWIRFKMHKLRPYNEKMDENQITSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="106704" PGL_stop="110514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106704" e_stop="106795"/>
            <exon e_start="107174" e_stop="107487"/>
            <exon e_start="107648" e_stop="107756"/>
            <exon e_start="108159" e_stop="108395"/>
            <exon e_start="109347" e_stop="109433"/>
            <exon e_start="109555" e_stop="109697"/>
            <exon e_start="109948" e_stop="110363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.018" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106704" e_stop="106795" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107174" e_stop="107487" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107648" e_stop="107756" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107757" i_stop="108158" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108159" e_stop="108395" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109347" e_stop="109433" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.018">
            <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109555" e_stop="109697" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.945">
            <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="109948" e_stop="110363" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106704" stop="106795"/>
              <exon start="107174" stop="107487"/>
              <exon start="107648" stop="107663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106746" stop="106795"/>
              <exon start="107174" stop="107487"/>
              <exon start="107648" stop="107742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106746" stop="106795"/>
              <exon start="107174" stop="107430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107475" stop="107487"/>
              <exon start="107648" stop="107756"/>
              <exon start="108159" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108185" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109697"/>
              <exon start="109948" stop="110203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108185" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109697"/>
              <exon start="109948" stop="110190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108189" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109697"/>
              <exon start="109948" stop="110363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108230" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109697"/>
              <exon start="109948" stop="110214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109606" stop="109697"/>
              <exon start="109948" stop="110139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG : GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG : GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA : ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG : GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T  W  R  A  Q  Q  I  G  W  K  M  Y  S  *  S  L  F  S  L  L  V  F  F  L  S  L  C  *  L  V  I  S  R :   Y  S  C  M  Q  Q  H  Q  R  N  K  Q  C  N  *  K  *  E  M  *  N  G  G  *  G  E  E  G  C  L  K  D  T  S  K  G  S  E  I  M  K  G  I  D  L  Q  Q  Q  E  E  L  M  N  M  R  *  *  A  T  F  L  R  D  L  E  E  T  S  N  I  I  F  V  W  T  W  L  D  R :   F  L  C  F  N  I  W  I  I  W  S  W  R  T  Y  V  T  A  *  N  P  *  F  S  L  K  E  K  Q :   *  Q  E  K  V  I  Q  F  K  E  C  C  S  *  *  E  V  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H   : G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  G  E  H  N  R  L  A  G  R  C  I  H  N  H  C  S  H  Y  W  S  S  S  C  H  Y  V  D  W  *  Y  Q   : G  I  L  A  C  N  N  I  K  E  T  S  N  A  T  K  N  E  K  C  R  M  V  D  E  E  K  K  V  A  S  R  I  Q  A  K  G  Q  K  L  *  K  A  *  I  C  S  N  K  R  S  *  *  I  *  D  D  K  Q  P  S  *  G  T  *  K  R  H  Q  I  S  S  L  F  G  L  G  *  T   : G  S  F  V  S  T  Y  G  *  F  G  P  G  E  H  M  *  P  R  K  I  L  D  F  H  *  R  R  N   : N  N  K  R  R  *  S  S  S  K  N  V  V  H  S  E  R  S  S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  :  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L   </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L  E  S  T  T  D  W  L  E  D  V  F  I  I  I  V  L  T  T  G  L  L  L  V  T  M  L  I  G  N  I  K  :  V  F  L  H  A  T  T  S  K  K  Q  A  M  Q  L  K  M  R  N  V  E  W  W  M  R  R  R  R  L  P  Q  G  Y  K  Q  R  V  R  N  Y  E  R  H  R  F  A  A  T  R  G  V  D  E  Y  E  M  I  S  N  L  P  E  G  L  R  R  D  I  K  Y  H  L  C  L  D  L  V  R  Q  :  V  P  L  F  Q  H  M  D  N  L  V  L  E  N  I  C  D  R  V  K  S  L  I  F  T  K  G  E  T  :  I  T  R  E  G  D  P  V  Q  R  M  L  F  I  V  R  G  H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W :   C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106706" stop="106795"/>
                    <exon start="107174" stop="107487"/>
                    <exon start="107648" stop="107756"/>
                    <exon start="108159" stop="108395"/>
                    <exon start="109347" stop="109433"/>
                    <exon start="109555" stop="109697"/>
                    <exon start="109948" stop="110320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNLESTTDWLEDVFIIIVLTTGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRRRLPQGYKQRVRNYERHRFAATRGVDEYEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQELRDGVKSCCMLGPGNFSGDELLSWCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106704" e_stop="106795"/>
            <exon e_start="107174" e_stop="107487"/>
            <exon e_start="107648" e_stop="107756"/>
            <exon e_start="108159" e_stop="108395"/>
            <exon e_start="109347" e_stop="109433"/>
            <exon e_start="109555" e_stop="110514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.018" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106704" e_stop="106795" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107174" e_stop="107487" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107648" e_stop="107756" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107757" i_stop="108158" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108159" e_stop="108395" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="108396" i_stop="109346" i_length="951"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109347" e_stop="109433" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.018">
            <gDNA_intron_boundary i_start="109434" i_stop="109554" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="109555" e_stop="110514" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106704" stop="106795"/>
              <exon start="107174" stop="107487"/>
              <exon start="107648" stop="107663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106746" stop="106795"/>
              <exon start="107174" stop="107487"/>
              <exon start="107648" stop="107742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106746" stop="106795"/>
              <exon start="107174" stop="107430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107475" stop="107487"/>
              <exon start="107648" stop="107756"/>
              <exon start="108159" stop="108395"/>
              <exon start="109347" stop="109433"/>
              <exon start="109555" stop="109671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109622" stop="110514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG : GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG : GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA : ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTACAGTCTGTAGATTTTGAG</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T  W  R  A  Q  Q  I  G  W  K  M  Y  S  *  S  L  F  S  L  L  V  F  F  L  S  L  C  *  L  V  I  S  R :   Y  S  C  M  Q  Q  H  Q  R  N  K  Q  C  N  *  K  *  E  M  *  N  G  G  *  G  E  E  G  C  L  K  D  T  S  K  G  S  E  I  M  K  G  I  D  L  Q  Q  Q  E  E  L  M  N  M  R  *  *  A  T  F  L  R  D  L  E  E  T  S  N  I  I  F  V  W  T  W  L  D  R :   F  L  C  F  N  I  W  I  I  W  S  W  R  T  Y  V  T  A  *  N  P  *  F  S  L  K  E  K  Q :   *  Q  E  K  V  I  Q  F  K  E  C  C  S  *  *  E  V  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H  G  K  F  R  S  E  S  S  C  L  Y  L  G  N  *  F  E  K  Q  I  *  *  T  R  M  V  V  Y  T  R  L  I  H  S  R  I  D  G  P  I  P  M  I  T  K  I  K  *  *  H  L  W  L  P  R  I  L  G  K  Q  A  F  V  Y  F  D  V  L  I  A  *  I  F  C  V  L  H  S  F  F  P  P  N  R  C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  E  I  G  A  H  P  P  P  S  I  C  P  S  I  I  H  S  C  D  M  *  *  S  L  R  F  N  L  C  E  F  V  D  T  E  F  K  K  E  K  K  I  L  I  Y  S  L  *  I  L   </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  G  E  H  N  R  L  A  G  R  C  I  H  N  H  C  S  H  Y  W  S  S  S  C  H  Y  V  D  W  *  Y  Q   : G  I  L  A  C  N  N  I  K  E  T  S  N  A  T  K  N  E  K  C  R  M  V  D  E  E  K  K  V  A  S  R  I  Q  A  K  G  Q  K  L  *  K  A  *  I  C  S  N  K  R  S  *  *  I  *  D  D  K  Q  P  S  *  G  T  *  K  R  H  Q  I  S  S  L  F  G  L  G  *  T   : G  S  F  V  S  T  Y  G  *  F  G  P  G  E  H  M  *  P  R  K  I  L  D  F  H  *  R  R  N   : N  N  K  R  R  *  S  S  S  K  N  V  V  H  S  E  R  S  S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  V  S  L  G  V  R  V  V  V  C  I  W  V  I  N  L  K  N  R  S  S  K  L  E  W  *  C  T  Q  G  *  F  T  L  G  L  M  V  P  S  Q  *  S  L  K  *  N  D  N  T  F  G  F  P  E  S  W  V  N  R  L  S  Y  I  L  M  C  *  *  P  E  Y  F  V  F  F  I  H  F  F  P  P  T  G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M  R  *  E  H  I  P  L  P  L  Y  V  L  Q  L  S  I  H  V  I  C  S  S  L  F  V  S  I  Y  V  N  S  W  T  P  S  L  R  K  K  R  R  F  *  S  T  V  C  R  F  *  </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L  E  S  T  T  D  W  L  E  D  V  F  I  I  I  V  L  T  T  G  L  L  L  V  T  M  L  I  G  N  I  K  :  V  F  L  H  A  T  T  S  K  K  Q  A  M  Q  L  K  M  R  N  V  E  W  W  M  R  R  R  R  L  P  Q  G  Y  K  Q  R  V  R  N  Y  E  R  H  R  F  A  A  T  R  G  V  D  E  Y  E  M  I  S  N  L  P  E  G  L  R  R  D  I  K  Y  H  L  C  L  D  L  V  R  Q  :  V  P  L  F  Q  H  M  D  N  L  V  L  E  N  I  C  D  R  V  K  S  L  I  F  T  K  G  E  T  :  I  T  R  E  G  D  P  V  Q  R  M  L  F  I  V  R  G  H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W  *  V  *  E  *  E  *  L  F  V  F  G  *  L  I  *  K  T  D  L  V  N  *  N  G  S  V  H  K  V  N  S  L  *  D  *  W  S  H  P  N  D  H  *  N  K  M  I  T  P  L  A  S  Q  N  L  G  *  T  G  F  R  I  F  *  C  V  N  S  L  N  I  L  C  S  S  F  I  F  S  P  Q  Q  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L  *  D  R  S  T  S  P  S  L  Y  M  S  F  N  Y  P  F  M  *  Y  V  V  V  S  S  F  Q  F  M  *  I  R  G  H  R  V  *  E  R  K  E  D  F  D  L  Q  S  V  D  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106706" stop="106795"/>
                    <exon start="107174" stop="107487"/>
                    <exon start="107648" stop="107756"/>
                    <exon start="108159" stop="108395"/>
                    <exon start="109347" stop="109433"/>
                    <exon start="109555" stop="109701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNLESTTDWLEDVFIIIVLTTGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRRRLPQGYKQRVRNYERHRFAATRGVDEYEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQELRDGVKSCCMLGPGNFSGDELLSW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109910" stop="110320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCVLHSFFPPNRCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="111201" PGL_stop="110571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111201" e_stop="111124"/>
            <exon e_start="111040" e_stop="110921"/>
            <exon e_start="110824" e_stop="110571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.797" e_score="0.962"/>
          <exon-intron don_prob="0.998" acc_prob="0.876" e_score="0.975"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="111201" e_stop="111124" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.797">
            <gDNA_intron_boundary i_start="111123" i_stop="111041" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="111040" e_stop="110921" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.876">
            <gDNA_intron_boundary i_start="110920" i_stop="110825" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="110824" e_stop="110571" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111201" stop="111124"/>
              <exon start="111040" stop="110921"/>
              <exon start="110824" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110772" stop="110580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA : GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG : AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</gDNA_template>
            <first_frame> F  D  E  Q  K  D  K  V  C  I  E  R  T  L  K  V  V  F  L  D  P  E  R  P  S  P  :  A  L  D  K  L  K  R  Q  L  A  Q  A  E  A  A  T  E  A  E  K  K  P  P  V  D  T  G  P  K  V  V  G  E  G  L  I  V  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  K  Q  *  R  V  F  M  *  V  R  L  F  P  E  *  Q  C  I  I  R  Y  A  L  L  I  I  A  F  L  W  I  D  G  V  E  G  *  C  N  A  S  C  K  E  E  H  *  V  E  I  *  D  Y  I  R  L  E  I  I  I  F  R  K  R  Y   </first_frame>
            <second_frame>  L  M  N  K  R  I  K  S  V  L  S  V  L  *  R  W  C  S  W  T  L  N  A  L  L  Q :   H  W  I  N  *  N  V  S  W  P  K  L  R  L  Q  Q  K  L  R  R  N  L  L  L  T  Q  V  R  K  L  W  E  K  A  *  *  *  M  N  G :   K  S  G  G  R  G  I  L  L  A  N  K  L  R  Q  W  I  Q  *  S  S  R  E  C  L  C  K  C  V  F  F  Q  N  S  N  V  *  S  D  M  H  F  L  L  L  P  F  F  G  L  M  V  *  K  V  N  A  M  L  H  V  K  K  N  T  E  W  R  F  K  I  I  *  D  *  K  *  L  Y  S  G  K  D  T  </second_frame>
            <third_frame>   *  *  T  K  G  *  S  L  Y  *  A  Y  S  K  G  G  V  L  G  P  *  T  P  F  S   : S  T  G  *  T  K  T  S  A  G  P  S  *  G  C  N  R  S  *  E  E  T  S  C  *  H  R  S  E  S  C  G  R  R  L  N  S  R  *  M   : E  R  A  E  G  E  V  S  C  S  P  T  S  *  G  S  G  F  S  K  A  V  E  S  V  Y  V  S  A  S  F  S  R  I  A  M  Y  N  Q  I  C  T  S  Y  Y  C  L  S  L  D  *  W  C  R  R  L  M  Q  C  F  M  *  R  R  T  L  S  G  D  L  R  L  Y  K  I  R  N  N  Y  I  Q  E  K  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111201" stop="111124"/>
                    <exon start="111040" stop="110921"/>
                    <exon start="110824" stop="110759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDEQKDKVCIERTLKVVFLDPERPSPALDKLKRQLAQAEAATEAEKKPPVDTGPKVVGEGLIVDEWKERRERYLARQQVEAVDSVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 357 chains have been computed
$ 
$ memory statistics:
$ 903872 bytes spliced alignments in total
$ 232 spliced alignments have been stored
$ 3896 bytes was the average size of a spliced alignment
$ 32216 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 2013 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 397 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:28:58
-->
