<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 02:45:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371574" ref_strand="+" ref_description="SGN-E371574 [TUS-29-E12](-)">
      <seq>gaaaccacatttaccattttttttgttattgtgtttgtgtttgtatttcgtgctgtgacttctaatactagcacgtactgaagatgcaatctcattggctccttgtgtgatggaactaagcagtccaccagaggatgtcctagttaactctttaatatgaagaggcgataaaataagccttttaaaagggcccaagtcacaaatatcacctgtttcattgaacatattagcatggcaataaacgtgaaccaggcgctgacaccacaagcagcaccatacaggggaacccccaagaaatgaactgctgcacggctcttcacagtagctgcagaaacaggattcatctggttgatctgccacctctgtccaccgaactgcccattggtgtaccacgtgcttatatccaaacattgatacacatttgcaatccttaagagcattcaatgagcaactaagatgagctgctgcaccacaagtgttgcagcaattaaaagaactctctgatgccaccattggtccaagagtttgagatggagacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="258" stop="1398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="558" g_stop="1098" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E371574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="558" e_stop="1098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCACATTT-CCATTTTTTTTGTTATTGTGTTTGTGTTTGTATTTCTTGCTTTGACTTCTAATACTAGCACGTACTGAAGATGCAATCTCATTGGCTCCTTGTGTGATGGAACTAAGCAGTCCACCAGAGGATGTCCTAGTTAACTCTTTAATATGAAGAGGCGATAAAATAAGCCTTTTAAAAGGGCCCAAGTCACAAATATCACCTGTTTCATTGAACATATTAGCATGGCAATAAACGTGAACCAGGCGCTGACACCACAAGCAGCACCATACAGGGGAACCCCCAAGAAATGAACTGCTGCACGGCTCTTCACAGTAGCTGCAGAAACAGGATTCATCTGGTTGATCTGCCACCTCTGTCCACCGAACTGCCCATTGGTGTACCACGTGCTTATATCCAAACATTGATACACATTTGCAATCCTTAAGAGCATTCAATGAGCAACTAAGATGAGCTGCTGCACCACAAGTGTTGCAGCAATTAAAAGAACTCTCTGATGCCACCATTGGTCCAAGAGTTTGAGATGGAGACATAG</genome_strand>
        <mrna_strand>GAAACCACATTTACCATTTTTTTTGTTATTGTGTTTGTGTTTGTATTTCGTGCTGTGACTTCTAATACTAGCACGTACTGAAGATGCAATCTCATTGGCTCCTTGTGTGATGGAACTAAGCAGTCCACCAGAGGATGTCCTAGTTAACTCTTTAATATGAAGAGGCGATAAAATAAGCCTTTTAAAAGGGCCCAAGTCACAAATATCACCTGTTTCATTGAACATATTAGCATGGCAATAAACGTGAACCAGGCGCTGACACCACAAGCAGCACCATACAGGGGAACCCCCAAGAAATGAACTGCTGCACGGCTCTTCACAGTAGCTGCAGAAACAGGATTCATCTGGTTGATCTGCCACCTCTGTCCACCGAACTGCCCATTGGTGTACCACGTGCTTATATCCAAACATTGATACACATTTGCAATCCTTAAGAGCATTCAATGAGCAACTAAGATGAGCTGCTGCACCACAAGTGTTGCAGCAATTAAAAGAACTCTCTGATGCCACCATTGGTCCAAGAGTTTGAGATGGAGACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546593" ref_strand="+" ref_description="SGN-E546593 [TUS-70-A15]">
      <seq>ctcgaaaagcgctgcaaccctctcctctccatcctttctcatttcggttagaagcaggaggtggaggaccactagttaacgcccctttcctctcctctactctctcctgcgagaaagcaatagtcatctaccggtgaaacaacaagcagttctgacgatgcaagccatcagcgagagcgcgaaaccagtatcagttgcgaccggcgaagagctccagcaaagcaacaacactttggcaagtagttgtgagccaccaccaacagcagttgtggccaatcaccaacggaactccatgggaacgatagctttgaccagcgacgcaacaacaacaacgaggttgttcaggcttaaaatcccagtcatgaagcgtatgtcgatggagtttgtttagaatattgagttttgttaaaagacggatcttcaacaaatacatgtagataagttttcgattaattctaaagcctgcattttcaattctttggtgactttcattcaagtgagtatgtttaagttgaatttcatatatcctcttatttttatggcagttttcgtgattaatttatactgattttagttttcttgtgaaagcatgtttaggttgcgattctctattcaagggtttgttcatcacttctatcatgatctggctttaatttgtgaagtttattttagtgtactggttgcaatgagtctgtactctaacatatgggttgcacattcttgttatttatataataaagtccagtttatgatttcctttgataatttcttctttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="-" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="28937" stop="27558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28637" g_stop="27858" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="-" ref_id="SGN-E546593" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28637" e_stop="27858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAAAGCGCTGCAACCCTCTCTTCTGCATCCTTTCTCGTTCCGGTTAGAAGCAGGAGGTGGAGGACCACTAGTTAACGCCCCTTCCCTCTCCTCTCCTCTCTCCTGCGAGAAAGCAATAGTCATCTACTGGTGAAACAACAAGCAGTTCTGATGACGCGAGCCATCAGCGAGAGCGCAAAACCAGTTTCAGTTGCGATCGGCGAAGAGCTCCCGCAAAGCAACAACACTTTGGCAAGTAGTCGCGAGCCACCACCAACAGCAGGTGTGGCCAATCACCAGCGAAACTCCATGGGAACGATAGCTTCGACCAGCGACGCAACAATAACAACGAGGTTGTTCAAGCTTATAATCCCAGTCATGAAGTGTATGTCGATGGAGTTTGTTTAGAATATTGAGTTTTGTTAAAAGACAGATGTTCAACAAATACATCTTGATAAG-TTTCGATTAATTCTAAAGCCTGCATTTTCAATTCTTTGGTGATTTTCATTTAAGTGGGTATGTTTAAGTTGAATTTCACATATCCTCTTATTTTAATGGTATTTTCTGTGATTAATATATAGTGATTTTAGTTTTCTTGTGAAAACATGTTTAGGTTGAGATTCTCTATTCAAGGTTTTTTTCATCACTTCTATCATGATCTGGCTGTAATTTGTGATGTTTCTTATAGTGTACTGGTTGTAATGAGTCTGTACTCTAACATATGGGTTGCACATTCTTGTTATTTATATAATAAAGTCTAGTGTATGATTTCCTTTGATTAATTTCTTCTTTCTAAA</genome_strand>
        <mrna_strand>CTCGAAAAGCGCTGCAACCCTCTCCTCTCCATCCTTTCTCATTTCGGTTAGAAGCAGGAGGTGGAGGACCACTAGTTAACGCCCCTTTCCTCTCCTCTACTCTCTCCTGCGAGAAAGCAATAGTCATCTACCGGTGAAACAACAAGCAGTTCTGACGATGCAAGCCATCAGCGAGAGCGCGAAACCAGTATCAGTTGCGACCGGCGAAGAGCTCCAGCAAAGCAACAACACTTTGGCAAGTAGTTGTGAGCCACCACCAACAGCAGTTGTGGCCAATCACCAACGGAACTCCATGGGAACGATAGCTTTGACCAGCGACGCAACAACAACAACGAGGTTGTTCAGGCTTAAAATCCCAGTCATGAAGCGTATGTCGATGGAGTTTGTTTAGAATATTGAGTTTTGTTAAAAGACGGATCTTCAACAAATACATGTAGATAAGTTTTCGATTAATTCTAAAGCCTGCATTTTCAATTCTTTGGTGACTTTCATTCAAGTGAGTATGTTTAAGTTGAATTTCATATATCCTCTTATTTTTATGGCAGTTTTCGTGATTAATTTATACTGATTTTAGTTTTCTTGTGAAAGCATGTTTAGGTTGCGATTCTCTATTCAAGGGTTTGTTCATCACTTCTATCATGATCTGGCTTTAATTTGTGAAGTTTATTTTAGTGTACTGGTTGCAATGAGTCTGTACTCTAACATATGGGTTGCACATTCTTGTTATTTATATAATAAAGTCCAGTTTATGATTTCCTTTGA-TAATTTCTTCTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359338" ref_strand="+" ref_description="SGN-E359338 [cLHT-31-N19]">
      <seq>tcgaaaagcgctgcaaccctctcctctccatcctttctcatttcggttagaagcaagaggtggaggaccactagttaacgcccctttcctctcctctactctctcctgcgagaaagcaatagtcatctaccggtgaaacaacaagcagttctgacgatgcaagccatcagcgagagcgcgaaaccagtatcagttgcgaccggcgaagagctccagcaaagcaacaacactttggcaagtagttgtgagccaccaccaacagcagttgtggccaatcaccaacggaactccatgggaacgatagctttgaccagcgacgcaacaacaacaacgaggttgttcaggcttaaaatcccagtcatgaagcgtatgtcgatggagtttgtttagaatattgagttttgttaaaagacggatcttcaacaaatacatgtagataagttttcgattaattctaaagcctgcattttcaattctttggtgactttcattcaagtgagtatgtttaagttgaatttcatatatcctcttatttttatggcagttttcgtgattaatttatactgattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="-" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="28936" stop="27765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28636" g_stop="28065" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="-" ref_id="SGN-E359338" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28636" e_stop="28065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAGCGCTGCAACCCTCTCTTCTGCATCCTTTCTCGTTCCGGTTAGAAGCAGGAGGTGGAGGACCACTAGTTAACGCCCCTTCCCTCTCCTCTCCTCTCTCCTGCGAGAAAGCAATAGTCATCTACTGGTGAAACAACAAGCAGTTCTGATGACGCGAGCCATCAGCGAGAGCGCAAAACCAGTTTCAGTTGCGATCGGCGAAGAGCTCCCGCAAAGCAACAACACTTTGGCAAGTAGTCGCGAGCCACCACCAACAGCAGGTGTGGCCAATCACCAGCGAAACTCCATGGGAACGATAGCTTCGACCAGCGACGCAACAATAACAACGAGGTTGTTCAAGCTTATAATCCCAGTCATGAAGTGTATGTCGATGGAGTTTGTTTAGAATATTGAGTTTTGTTAAAAGACAGATGTTCAACAAATACATCTTGATAAG-TTTCGATTAATTCTAAAGCCTGCATTTTCAATTCTTTGGTGATTTTCATTTAAGTGGGTATGTTTAAGTTGAATTTCACATATCCTCTTATTTTAATGGTATTTTCTGTGATTAATATATAGTGATTTTAG</genome_strand>
        <mrna_strand>TCGAAAAGCGCTGCAACCCTCTCCTCTCCATCCTTTCTCATTTCGGTTAGAAGCAAGAGGTGGAGGACCACTAGTTAACGCCCCTTTCCTCTCCTCTACTCTCTCCTGCGAGAAAGCAATAGTCATCTACCGGTGAAACAACAAGCAGTTCTGACGATGCAAGCCATCAGCGAGAGCGCGAAACCAGTATCAGTTGCGACCGGCGAAGAGCTCCAGCAAAGCAACAACACTTTGGCAAGTAGTTGTGAGCCACCACCAACAGCAGTTGTGGCCAATCACCAACGGAACTCCATGGGAACGATAGCTTTGACCAGCGACGCAACAACAACAACGAGGTTGTTCAGGCTTAAAATCCCAGTCATGAAGCGTATGTCGATGGAGTTTGTTTAGAATATTGAGTTTTGTTAAAAGACGGATCTTCAACAAATACATGTAGATAAGTTTTCGATTAATTCTAAAGCCTGCATTTTCAATTCTTTGGTGACTTTCATTCAAGTGAGTATGTTTAAGTTGAATTTCATATATCCTCTTATTTTTATGGCAGTTTTCGTGATTAATTTATACTGATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578220" ref_strand="+" ref_description="SGN-E578220 [LE12AG11]">
      <seq>tgagcagctcgaccaatttttccttttctattgctgtcaaatggatactgactcgggtttctctaaccgactcgtcatctcctaagttgactatctatctctcatccaggttgggatttttattatctgcaaggttcctcaagtcgtcagtaaggtgttcaggcatcatagtttcctcatcatattcatcacattcatcttcattgactttacttagttcatcgtgttcgtgacatgtcatgatattggcaagtttagattcatttttactgaaaataaactaaagcaatcatgttagatagaaagaatttaaatgtatatattagaaagtaatttgcaaaggcaagataaaaaataaacgaggcttttcattggaaaaaaggcgtacaactttgatcatgactcatgtcaatgtgagtcatttcctttttaagcattacgatgaaaataacgtgacataaaaggttgtttcgggcctcgttcgaactacaccaattttcaaaagtaaaacttcaaatcttgtctttgtctaccaagcaattcgatgaatcataagtggagtggccacccaattctttagcatctcttcaggtttggcatctcgtatggtgggtgtcgcagtgcattcttccaagatcacaacacaatctccttcatcaaacaatcgtcccatcccttacacttcaccattaccctcggactctaaagctttagccacaaataactggtacaattctggaataggctttggtatatcaaggccatgtttcttccttgcttctacttcgaataattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="45429" stop="46827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45729" g_stop="46527" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E578220" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45729" e_stop="46527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTAGCTCAACCAATTTTTCCTTTTCTATTGCTGTCAAATGTATACTGACTCGGGTTTCTCTAACCGACTCGTCATCTCCAAAGTTGACTATCTCTGTCTCATCCAGGTTGGGATTTTTATTATCTGCAAGGTTCCTCAAGTCGTTAGTAAGGTGTTCAGGCATCATAGTTTCCTCATCATATTCTTCACATTCATCTTCATTGACTTTACTTAGTTCATCGTGTTCGTGACATGTCATGACATTGGCAAGTTTAGATTCATTTTTATTGAAAAGAAAATAAAGCAATCATGTTAGATAGAAAGAATTTAAATGTATATATCAGAAAGTAATTTGCAGAGGTAAGATAAAAAATAAACGAGGTTTTTCATTGGAAAAAAGGTGTACAAACTTTGATCATGACTCATGTCAATGTGAGTCCTTTCTTTTTTAAACATTACGATGAAAATAAAGTGACATAAAAGTTTATTTCGGGCCTCGTCCGAACTACACCGATTTTCAAAAGTAAAACTTCAAATTCTTGTCTTTGTCTACCAAGCAATTCGATGAATCATAAGTGGAGTGGCCACCCAATTCTGTAGCATCTCTTCAGGTTTGGCATCTCGGATGGTGGGTGTCGCAGTGCATTCTTCCAAGATCACAGCACAATCTCCTTCATCAAAAAATCATCCCATCCCTTCCACTAGACCATCACTCTCGGACTCTAAAGCTTTAGCAACAAATAACTGGTACAATTCTGGAATAGGCTTTGGTATATCAAGGCCATGTTTCTTCCTTGCTTCTGCTTCGAATAATTCC</genome_strand>
        <mrna_strand>TGAGCAGCTCGACCAATTTTTCCTTTTCTATTGCTGTCAAATGGATACTGACTCGGGTTTCTCTAACCGACTCGTCATCTCCTAAGTTGACTATCTATCTCTCATCCAGGTTGGGATTTTTATTATCTGCAAGGTTCCTCAAGTCGTCAGTAAGGTGTTCAGGCATCATAGTTTCCTCATCATATTCATCACATTCATCTTCATTGACTTTACTTAGTTCATCGTGTTCGTGACATGTCATGATATTGGCAAGTTTAGATTCATTTTTACTGAAAATAAACTAAAGCAATCATGTTAGATAGAAAGAATTTAAATGTATATATTAGAAAGTAATTTGCAAAGGCAAGATAAAAAATAAACGAGGCTTTTCATTGGAAAAAAGGCGTAC-AACTTTGATCATGACTCATGTCAATGTGAGTCATTTCCTTTTTAAGCATTACGATGAAAATAACGTGACATAAAAGGTTGTTTCGGGCCTCGTTCGAACTACACCAATTTTCAAAAGTAAAACTTCAAA-TCTTGTCTTTGTCTACCAAGCAATTCGATGAATCATAAGTGGAGTGGCCACCCAATTCTTTAGCATCTCTTCAGGTTTGGCATCTCGTATGGTGGGTGTCGCAGTGCATTCTTCCAAGATCACAACACAATCTCCTTCATCAAACAATCGTCCCATCCCTTACACTTCACCATTACCCTCGGACTCTAAAGCTTTAGCCACAAATAACTGGTACAATTCTGGAATAGGCTTTGGTATATCAAGGCCATGTTTCTTCCTTGCTTCTACTTCGAATAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401304" ref_strand="+" ref_description="SGN-E401304 [PPC-3-B6]">
      <seq>cgcccgcccttagagagagctgcaacactataaaccctagcatccattctgagtaattctcttacgaacccttgctggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102583" stop="104015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102888" g_stop="103052" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="196" r_length="173" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="287" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103715" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="401" r_length="114" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E401304" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102888" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATAAACCCTAGCATCCATTCTGAGTAATTCTCTTAGGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCG-A-------AGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCA</genome_strand>
        <mrna_strand>AACACTATAAACCCTAGCATCCATTCTGAGTAATTCTCTTACGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGCAGCGGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448078" ref_strand="+" ref_description="SGN-E448078 [cSTS-1-N3]">
      <seq>ctagcatccattctgagtaattctcttacgaacccttgctggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgctccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagaatgagtcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttaaggtattgntaaatcaaattttgtggatgtttttgccttttcggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102601" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102901" g_stop="103052" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="251" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="435" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104586" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="637" r_length="202" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E448078" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102901" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCATCCATTCTGAGTAATTCTCTTAGGAACCCTTGCTGGAGAGTGGAGAAAGATCT-----GCA---GCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATG-TTTTGCCTTTTCAGAATTGT</genome_strand>
        <mrna_strand>CTAGCATCCATTCTGAGTAATTCTCTTACGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGCAGCGGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCTCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTTAAGAGAGA-ATGAG-TCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAAGGTATTGNTAAATCAAATTTTGTGGATGTTTTTGCCTTTTCGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724904" ref_strand="+" ref_description="SGN-E724904 [FC25CA04]">
      <seq>gaggaacccttgctcgagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcngtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102628" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102927" g_stop="103052" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="217" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="401" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104596" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="612" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="656"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E724904" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102927" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GAGGAACCCTTGCTCGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712499" ref_strand="+" ref_description="SGN-E712499 [FB05AB04]">
      <seq>ccttgctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102634" stop="104920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102934" g_stop="103052" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="210" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="394" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104617" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="626" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="651"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E712499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102934" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</genome_strand>
        <mrna_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203384" ref_strand="+" ref_description="SGN-E203384 [cLEB-3-D16]">
      <seq>gcacgagggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgttactgtgtggacctaaatagatttagggtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102641" stop="104850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102934" g_stop="103052" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="210" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="394" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104550" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="559" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E203384" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102934" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTG</genome_strand>
        <mrna_strand>GCACGAGGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTACTGTGTGGACCTAAATAGATTTAGGGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326149" ref_strand="+" ref_description="SGN-E326149 [cTOC-16-C3]">
      <seq>ttgctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttanggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102636" stop="104927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102936" g_stop="103052" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="208" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="392" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104634" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="641" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E326149" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102936" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTA</genome_strand>
        <mrna_strand>TTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTANGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290912" ref_strand="+" ref_description="SGN-E290912 [cLET-8-E15]">
      <seq>gctggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattccattttatgaatacatgagttagctcaaacttattggttctgtttggacctaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102638" stop="104834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102938" g_stop="103052" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="206" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="390" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104534" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="539" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E290912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102938" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</genome_strand>
        <mrna_strand>GCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCCATTTTATGAATACATGAGTTAGCTCAAACTTATTGGTTCTGTTTGGACCTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711978" ref_strand="+" ref_description="SGN-E711978 [FB03CB12]">
      <seq>ggtagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102641" stop="104985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102940" g_stop="103052" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104694" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="697" r_length="309" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E711978" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102940" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGA</genome_strand>
        <mrna_strand>GGTAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319827" ref_strand="+" ref_description="SGN-E319827 [cTOB-12-D14]">
      <seq>tggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaacttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102640" stop="104840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102940" g_stop="103052" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104540" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="543" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E319827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102940" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAG</genome_strand>
        <mrna_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAACTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294785" ref_strand="+" ref_description="SGN-E294785 [cLET-17-H23]">
      <seq>tggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaaaggcggaaggaggatcacatccagtggtcagcgggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102640" stop="104721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102940" g_stop="103052" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="204" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104421" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="424" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E294785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102940" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCT</genome_strand>
        <mrna_strand>TGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713144" ref_strand="+" ref_description="SGN-E713144 [FB06DD05]">
      <seq>ggagagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcngaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102641" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102941" g_stop="103052" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="203" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="387" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104581" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="583" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="602"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E713144" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102941" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>GGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCNGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341427" ref_strand="+" ref_description="SGN-E341427 [cTOE-23-L10]">
      <seq>gagagaggagatttatctgcagcgaatatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102656" stop="104920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102942" g_stop="103052" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="202" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="386" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104629" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="630" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E341427" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102942" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGT</genome_strand>
        <mrna_strand>GAGAGAGGAGATTTATCTGCAGCGAATATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322609" ref_strand="+" ref_description="SGN-E322609 [cTOB-26-G9]">
      <seq>agagtggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaatagatttagggtattgttgaattaaaatgtggatgttttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102643" stop="104875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102943" g_stop="103052" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="385" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104575" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="574" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E322609" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102943" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTT</genome_strand>
        <mrna_strand>AGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT-AATAGATTTAGGGTATTGTTGAATTAAAATGTGGATGTTTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271568" ref_strand="+" ref_description="SGN-E271568 [cLEM-23-F21]">
      <seq>gaggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102646" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102946" g_stop="103052" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="198" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="382" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104702" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="699" r_length="317" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E271568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102946" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGC</genome_strand>
        <mrna_strand>GAGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347127" ref_strand="+" ref_description="SGN-E347127 [cTOF-25-C15]">
      <seq>tggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttaaggtattgttgaattaaattgtggatgttttgccttttcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102647" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102947" g_stop="103052" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="381" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104581" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="577" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="590"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E347127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102947" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAAGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307866" ref_strand="+" ref_description="SGN-E307866 [cLEY-20-A13]">
      <seq>aggagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102648" stop="104810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102947" g_stop="103052" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="381" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104510" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="506" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E307866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102947" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTA</genome_strand>
        <mrna_strand>AGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724903" ref_strand="+" ref_description="SGN-E724903 [FC25CA02]">
      <seq>ggagaaagatctgcagcgaagatggaggcagcaacaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcngtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102648" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102948" g_stop="103052" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="196" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="380" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104596" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="591" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="616"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E724903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102948" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAACAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484383" ref_strand="+" ref_description="SGN-E484383 [cSTE-13-K17]">
      <seq>ctgcagcgccagcggcgaagacggaggcagcaagaagtgtgaaagacgtttccccccacgactttgtcaaggcttatgcccgctcatctcaagcgctccggaaagaaggaagcttcctgaatggacctgatatagtcaagacctggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagaagctgcttctatggcgaggaagatctatttgagaaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102658" stop="104834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102949" g_stop="103052" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="200" r_length="95" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="385" r_length="185" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104534" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="532" r_length="147" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E484383" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102949" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATG-CCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGG-AGCTTCCTGAATGGA-CTGATATAGTTAAGA-CTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAG-AGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAG-AGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</genome_strand>
        <mrna_strand>CTGCAGCGCCAGCGGCGAAGACGGAGGCAGCAAGAAGTGTGAAAGACGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCTTCCTGAATGGACCTGATATAGTCAAGACCTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263570" ref_strand="+" ref_description="SGN-E263570 [cLEG-60-F11]">
      <seq>gagaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggaggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102649" stop="104802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102949" g_stop="103052" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="195" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="379" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104502" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="496" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E263570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102949" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCT</genome_strand>
        <mrna_strand>GAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGAGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341283" ref_strand="+" ref_description="SGN-E341283 [cTOE-22-F21]">
      <seq>agaaagatctgcttcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102650" stop="104870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102950" g_stop="103052" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="194" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="378" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104570" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="563" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E341283" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102950" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</genome_strand>
        <mrna_strand>AGAAAGATCTGCTTCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588096" ref_strand="+" ref_description="SGN-E588096 [41642]">
      <seq>ctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcacattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102950" g_stop="103052" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="194" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="378" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104563" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="554" r_length="176" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E588096" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102950" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGG</genome_strand>
        <mrna_strand>CTGCAGCGCAGCGGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCACATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601238" ref_strand="+" ref_description="SGN-E601238 [54270]">
      <seq>ctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttttcaaaaaaaaaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102950" g_stop="103052" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="194" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="378" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104559" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="550" r_length="172" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="587"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E601238" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102950" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATT</genome_strand>
        <mrna_strand>CTGCAGCGCAGCGGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716014" ref_strand="+" ref_description="SGN-E716014 [FB15DE12]">
      <seq>gatagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104684" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="676" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="689"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E716014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</genome_strand>
        <mrna_strand>GATAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716923" ref_strand="+" ref_description="SGN-E716923 [FB18BG01]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatattgcattcaatgcatcattacttcataattataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104681" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="673" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E716923" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACA</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATATTGCATTCAATGCATCATTACTTCATAATTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713617" ref_strand="+" ref_description="SGN-E713617 [FB09AE10]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104617" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="609" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="626"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E713617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715595" ref_strand="+" ref_description="SGN-E715595 [FB14CH11]">
      <seq>gatagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104596" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="588" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="599"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E715595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GATAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716396" ref_strand="+" ref_description="SGN-E716396 [FB16DG05]">
      <seq>gaaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104596" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="588" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="599"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E716396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203428" ref_strand="+" ref_description="SGN-E203428 [cLEB-3-P10]">
      <seq>gcacgagctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactgtgagcctaacggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattctatgaatacatgagttagctcaaacttattgtttctgtgtggacctaaatagatttagggtattgttgaattaaattgtggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="377" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104570" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="562" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E203428" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</genome_strand>
        <mrna_strand>GCACGAGCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTGTGAGCCTAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTCTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTGTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277180" ref_strand="-" ref_description="SGN-E277180 [cLEL-3-H8](-)">
      <seq>gcacgagctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttgcccgcatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtgggtcagttgcacgccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102651" stop="104037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102951" g_stop="103052" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103737" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="329" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E277180" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277180" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102951" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACAT</genome_strand>
        <mrna_strand>GCACGAGCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTGCCCGCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGGTCAGTTGCACGCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723934" ref_strand="+" ref_description="SGN-E723934 [FC22CA02]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaactgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcaaagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgagattcagtgcttgtttnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="105008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104704" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="695" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="763"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E723934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAACTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAAAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315265" ref_strand="+" ref_description="SGN-E315265 [cTOA-24-E24]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104684" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="675" r_length="299" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E315265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAA</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342002" ref_strand="+" ref_description="SGN-E342002 [cTOF-10-G6]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcatttcatgcatcattacttcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104675" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="666" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E342002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTTCATGCATCATTACTTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344231" ref_strand="+" ref_description="SGN-E344231 [cTOF-16-L12]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaactnattggttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctggagtgtgtattgtggcatatgttgcattcaatgcatcattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104669" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="660" r_length="284" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E344231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTNATTGGTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGGAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265789" ref_strand="+" ref_description="SGN-E265789 [cLEI-11-N2]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttaaggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104605" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="596" r_length="220" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E265789" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAAGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343432" ref_strand="+" ref_description="SGN-E343432 [cTOF-19-H3]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactntgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatganngtcattcaatttatgaatacatgagttagctcaaacttattgtttctgtttggacctaatagatttanggtattgttgaattaaaatgtggatgttttgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104576" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="566" r_length="190" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E343432" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGT-TCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTNTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGANNGTCATTCAA-TTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT-AATAGATTTANGGTATTGTTGAATTAAAATGTGGATGTTTTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267073" ref_strand="+" ref_description="SGN-E267073 [cLEI-4-G18]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattgtatgaatacatgagttagctcaaacttattgtttctgtttggacctaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104533" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="524" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E267073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATA</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTGTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356571" ref_strand="+" ref_description="SGN-E356571 [cTOS-21-K24]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattggttctgtttggacctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104532" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="523" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E356571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAAT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGGTTCTGTTTGGACCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310457" ref_strand="+" ref_description="SGN-E310457 [cTOA-9-G19]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaacttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104528" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="519" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E310457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAACTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319874" ref_strand="+" ref_description="SGN-E319874 [cTOB-12-K7]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104507" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="498" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E319874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAAC</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340069" ref_strand="+" ref_description="SGN-E340069 [cTOF-3-J1]">
      <seq>aaagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102652" stop="104097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102952" g_stop="103052" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="192" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="376" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E340069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102952" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG</genome_strand>
        <mrna_strand>AAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716889" ref_strand="+" ref_description="SGN-E716889 [FB18BC12]">
      <seq>aatatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102653" stop="104985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102953" g_stop="103052" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="191" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="375" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104693" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="683" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E716889" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102953" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>AATATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275898" ref_strand="+" ref_description="SGN-E275898 [cLEN-12-K5]">
      <seq>aagatctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102653" stop="104975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102953" g_stop="103052" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="191" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="375" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104675" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="665" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E275898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102953" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</genome_strand>
        <mrna_strand>AAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271727" ref_strand="+" ref_description="SGN-E271727 [cLEM-23-H24]">
      <seq>atctgcagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcatttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattccattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102656" stop="104834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102956" g_stop="103052" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="188" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="372" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104534" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="521" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E271727" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102956" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</genome_strand>
        <mrna_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCATTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCCATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282572" ref_strand="+" ref_description="SGN-E282572 [cLER-18-H14]">
      <seq>atctgctgtgaagatggaggcatcaagaagtgtgatattgatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102685" stop="103985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102956" g_stop="103052" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103685" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="274" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E282572" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102956" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGA-A-AGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATG</genome_strand>
        <mrna_strand>ATCTGCTGTGAAGATGGAGGCATCAAGAAGTGTGATATTGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619898" ref_strand="+" ref_description="SGN-E619898 [70593]">
      <seq>taacggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgtcttttcggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102661" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102958" g_stop="103052" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="186" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="370" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104559" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="542" r_length="172" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E619898" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102958" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATT</genome_strand>
        <mrna_strand>TAACGGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310591" ref_strand="+" ref_description="SGN-E310591 [cLEZ-19-J18]">
      <seq>cagcgaagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102661" stop="104920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102961" g_stop="103052" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="183" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="367" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104620" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="602" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E310591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102961" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTA</genome_strand>
        <mrna_strand>CAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734368" ref_strand="+" ref_description="SGN-E734368 [LB12BH12]">
      <seq>cgtagatggaggcagcaagaagtgtgaaagatgtttccccccatgattttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatattgcattcaatgcatcattacttcataattatacataaatccctgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102664" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="180" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="364" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104693" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="672" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="687"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E734368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>CGTAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATATTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466886" ref_strand="+" ref_description="SGN-E466886 [cPRO-26-K18]">
      <seq>ggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttttcagaactttgtgtctttctcagtatgtcaagttttgccctttcagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="120" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="395" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104617" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="632" r_length="237" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="646"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E466886" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAAT--TGTGGATG-TTTTGCCTTTTCAGAA---T-TGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTTTTGCCTTTTCAGAACTTTGTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574347" ref_strand="+" ref_description="SGN-E574347 [33800]">
      <seq>agaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttatggtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgttgggtcttttcggaactttgtgtctttctcagtttgtcaagttttgcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="111" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="202" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="386" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104615" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="620" r_length="234" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E574347" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATGTTTTGCCTTTTCAGAA---T-TGTCTTTCTCAGTATGTCAAGTTTTGCCCTTT</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATGGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTGGGTCTTTTCGGAACTTTGTGTCTTTCTCAGTTTGTCAAGTTTTGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574652" ref_strand="+" ref_description="SGN-E574652 [34154]">
      <seq>ggagagtggagaaagatctgcagcgcagcggcgaacatggaggcagtcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaaccttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaatttgtggatgtttttgccttttcggaactttgtgtctttctcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="121" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="212" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="396" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104601" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="612" r_length="216" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E574652" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAG-CAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA-TTGTGGATG-TTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTC</genome_strand>
        <mrna_strand>CGAACATGGAGGCAGTCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAACCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTGTGGATGTTTTTGCCTTTTCGGAACTTTGTGTCTTTCTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570160" ref_strand="+" ref_description="SGN-E570160 [14700]">
      <seq>tggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaacatcaaatttgtggatgtttgtcttttcggaactttgtgtctttctcagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="114" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="205" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="389" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104584" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="587" r_length="198" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E570160" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGA-ATTAAA-TTGTGGATGTTTTGCCTTTTCAGAATT</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAACATCAAATTTGTGGATG-TTTGTCTTTTCGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573410" ref_strand="-" ref_description="SGN-E573410 [32717]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagacctgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtatggttaaatcaattttgtggatgttttgccttttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="384" r_length="183" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104580" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="578" r_length="194" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E573410" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573410" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAA-ATTGTGGATGTTTTGCCTTTTCAG</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAG-ACCTGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATGGTTAAATCAATTTTGTGGATGTTTTGCCTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444071" ref_strand="+" ref_description="SGN-E444071 [cSTA-41-C16]">
      <seq>aaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="109" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="200" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="384" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104578" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="578" r_length="194" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E444071" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATG-TTTTGCCTTTTC</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTTTTGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408525" ref_strand="+" ref_description="SGN-E408525 [PPI-11-I14]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="385" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104577" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="578" r_length="193" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E408525" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATG-TTTTGCCTTTT</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTTTTGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484701" ref_strand="+" ref_description="SGN-E484701 [cSTE-14-M2]">
      <seq>gtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagttttgaccctaaatagatttagggtattgttaaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="115" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="206" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="390" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104558" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="562" r_length="172" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E484701" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGA-CCTAAATAGATTTAGGGTATTGTTGAATTAAAT</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTTGACCCTAAATAGATTTAGGGTATTGTTAAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595828" ref_strand="+" ref_description="SGN-E595828 [39109]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaaggcagtggttcagttgcccgccacattcttccgcaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgctcgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="386" r_length="185" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104544" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="543" r_length="157" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E595828" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGA-GCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGGCAGTGGTTCAGTTGCCCGCCACATTCTTCCGCAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTCGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481562" ref_strand="+" ref_description="SGN-E481562 [cSTD-18-L1]">
      <seq>ggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="120" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="395" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104541" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="549" r_length="154" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E481562" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGG</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567637" ref_strand="+" ref_description="SGN-E567637 [11795]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccgggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctgggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="111" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="202" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="386" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104530" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="530" r_length="144" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E567637" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCC-GGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGC-CGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557770" ref_strand="+" ref_description="SGN-E557770 [16621]">
      <seq>ggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtgggccagcgggatcttgaccaggttgctggaagaattgctgtttgcttgtttaagagagcatcgagttcattcaatcttatgaatacatgagtttagctcaaaaacttattgtttcaagtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="120" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="395" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104525" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="542" r_length="147" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E557770" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGT-GGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTG-TTGCTTG-TTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAG-TTAGCTC--AAACTTATTGTTTC-TGTTTGGA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTTGCTTGTTTAAGAGAGCATCGAGTTCATTCAATCTTATGAATACATGAGTTTAGCTCAAAAACTTATTGTTTCAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441999" ref_strand="+" ref_description="SGN-E441999 [cSTA-31-P7]">
      <seq>cgagggaaagaatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccaccgacctttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="118" r_length="91" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="209" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="393" r_length="184" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104517" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="523" r_length="130" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E441999" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCA-TGA-TTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTC</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACCGACCTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565838" ref_strand="+" ref_description="SGN-E565838 [4277]">
      <seq>gtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccaggaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccaagcgggatcttgaccaggttgctggaagaattcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="115" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="206" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="391" r_length="185" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104443" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="450" r_length="59" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E565838" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCA-GAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTC-AGCGGGATCTTGACCAAGTTGCCGGAAGAATT</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAAGCGGGATCTTGACCAGGTTGCTGGAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471705" ref_strand="+" ref_description="SGN-E471705 [cSTB-24-P24]">
      <seq>gatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="106" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="381" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104424" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="420" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E471705" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579198" ref_strand="+" ref_description="SGN-E579198 [86324]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggcgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103734" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E579198" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGCGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565853" ref_strand="+" ref_description="SGN-E565853 [4292]">
      <seq>ctggagagtggagaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttgtgcaaaagcagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="122" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="213" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103719" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="331" r_length="118" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E565853" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGG</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTGTGCAAAAGCAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565978" ref_strand="+" ref_description="SGN-E565978 [4417]">
      <seq>gaaagatctgcagcgcagcggcgaagatggaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaatgcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatcctatggtggtaaccagaggaatggaagccgtccacgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102654" stop="104001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102964" g_stop="103052" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103701" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="302" r_length="101" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E565978" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102964" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAAT-CTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCA</genome_strand>
        <mrna_strand>CGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAATGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564135" ref_strand="+" ref_description="SGN-E564135 [3549]">
      <seq>gggagagtggagaaagatctgcagcgcagcggcggaaatgttaggcagcaagaagtgtgaaagatgtttccccccacgactttgtcaagggcttatgccgctcatctcaagcgctccgggaaagatggagcttcctgaatggactgatatagtcaagactgggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagcaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcacgttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggcatcttgaccaggttgctggaagaattgctgttgcttgttaaggacagatgagttcattcaatcttatgaatacatgagttagctcaaaccttattgtttcagtttggacctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102641" stop="104832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102975" g_stop="103052" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="124" r_length="80" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="216" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="402" r_length="186" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104532" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="550" r_length="148" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E564135" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102975" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAG-GCTTATGCCGCTCATCTCAAGCGCTCC-GGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACT-GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAG-AGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCA-GTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGG-ATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAA-CTTATTGTTTCTGTTTGGACCTAAAT</genome_strand>
        <mrna_strand>GCAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGGCTTATGCCGCTCATCTCAAGCGCTCCGGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGCAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCACGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGCATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTTAAG-GACAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACCTTATTGTTTCAGTTTGGACCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562000" ref_strand="+" ref_description="SGN-E562000 [17221]">
      <seq>cagcaagaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgtcatctcaagcgctccggaaagatggagcttcctgaaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttgagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttnttcagaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102676" stop="104884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102976" g_stop="103052" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="168" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="352" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104586" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="555" r_length="203" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E562000" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102976" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTG-AATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATG-TTTTGCCTT-TTCAGAATTGT</genome_strand>
        <mrna_strand>CAGCAAGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCG-TCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT--GAGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTTTTGCCTTNTTCAGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561763" ref_strand="+" ref_description="SGN-E561763 [18975]">
      <seq>agaagtgtgaaagatgtttccccccacgactttgtcaaggcttatgccgtcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagtcaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttttcggaactttgtgtctttctcagtttgtcaagttttgccctttcagtaccctgagtgtgtattgtggcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102681" stop="104944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102981" g_stop="103052" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="162" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="346" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104386" g_stop="104646" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="611" r_length="265" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E561763" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102981" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAA--TTGTGGATGTTTT-GCCTTTTCAGAA---T-TGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATG</genome_strand>
        <mrna_strand>AGAAGTGTGAAAGATGTTTCCCCCCACGACTTTGTCAAGGCTTATGCCG-TCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATTTTGTGGATGTTTTTGCCTTTTCGGAACTTTGTGTCTTTCTCAGTTTGTCAAGTTTTGCCCTTTCAGTACCCTG-AGTGTGTATTGTGGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378482" ref_strand="+" ref_description="SGN-E378482 [TUS-48-C23]">
      <seq>tcaaggcttatgccgctcatctcaagcgctccggaaagatggagcttcctgaatggactgatatagttaagactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcctccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaccagaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="102715" stop="103984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103015" g_stop="103052" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="129" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103602" g_stop="103684" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="211" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E378482" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103015" e_stop="103052"/>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAGGTCTATACGAATTGAATTTCGTTTTACATTCATATTTGCTTCGATTTTCTCAACTGATTTACCTCTTACATCATTGAATATAGCAATAGAAACAACGCAGAATTTGTAGCTATTTGCTGGATTGAAAGATTTTCAAATTTCAATTTTGTATACACGCTTCCTGCTAAAATATAGAAATGATATTTGTTCTTCTTCTTGTTGGATTCAATGGACCTTTGCCCCCTTTTACCCTGTTAATTTCCCTACTGGAAGTTATTTGCTCAGATCTGCCTTATTATCTACCATAAAGTACTTTGTTTTCTTGTTAATTCCAGCCACTGCAATTTAATGCATGTTTGGGCTTGTCTATTCATGCTTATTGTACCTTTGATTTTTGCAGATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAAT</genome_strand>
        <mrna_strand>TCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CCTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGG-AACCAGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203385" ref_strand="+" ref_description="SGN-E203385 [cLEB-3-D16](-)">
      <seq>gaaagatggagcttcctgaatggagtgatatagttatgactggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103130" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="96" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="280" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104581" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="476" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E203385" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGA</genome_strand>
        <mrna_strand>ATGGAGCTTCCTGAATGGAGTGATATAGTTATGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565267" ref_strand="+" ref_description="SGN-E565267 [3707]">
      <seq>tgggagcttcctgaatggactgatatagtcaagactgggtaagctaaaggagcttgcccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgttaagagagatgagttcattcaatcttatgaatacatgagttagctcaaacttattgtttcagtttggacctaaatagatttagggtattgttaaatcaaattttgtggatgtttttgccttttcggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103134" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103432" g_stop="103522" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="275" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104559" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="447" r_length="172" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="488"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E565267" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103432" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACT-GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATT</genome_strand>
        <mrna_strand>TGGGAGCTTCCTGAATGGACTGATATAGTCAAGACTGGGTAAGCTAAAGGAGCTTG-CCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTT-A-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCAGTTTGGACCTAAATAGATTTAGGGTATTGTTAAATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275767" ref_strand="-" ref_description="SGN-E275767 [cLEN-18-C24]">
      <seq>ggtaagctaaaggagcttgccccatatgatgctgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103168" stop="104981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103468" g_stop="103522" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="239" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104681" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="535" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E275767" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103468" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACA</genome_strand>
        <mrna_strand>GGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203429" ref_strand="+" ref_description="SGN-E203429 [cLEB-3-P10](-)">
      <seq>aaaggagcttgccccatatgatggtgattggtactacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103176" stop="104897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103476" g_stop="103522" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="231" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104596" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="442" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="460"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E203429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103476" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</genome_strand>
        <mrna_strand>AAAGGAGCTTGCCCCATATGATGGTGATTGGTACTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562272" ref_strand="+" ref_description="SGN-E562272 [712]">
      <seq>cccatatgatgctgattggtactacatcagagctgcttctatggcgaggaagatctatttgagaggaggtattggtgtcggtgggttccgaagaatctatggtggtaaccagcaggaatggaagccgtccacgtcatttttgcaaaagcagtggttcagttgcccgccacattcttcaacaattgcagaacatgaacatcattgactttgagcctaagggtggaaggaggatcacatccagtggccagcgggatcttgaccaggttgctggaagaattgctgttgcttgtttaagagagatgagttcattcaatcttatgaatacatgagtttagctcaaacttattggttttcagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103188" stop="104822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103488" g_stop="103522" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="220" r_length="185" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104523" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="360" r_length="140" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E562272" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103488" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATATGATGCTGATTGGTACTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAG-AGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAG-TTAGCTCAAACTTATT-G-TTTCTGTTTG</genome_strand>
        <mrna_strand>CCCATATGATGCTGATTGGTACTACATCAGAGCTG...............................................................................CTTCTATGGCGAGGAAGATCTATTTGAGAGGAGGTATTGGTGTCGGTGGGTTCCGAAGAATCTATGGTGGTAACCAGCAGGAATGGAAGCCGTCCACGTCATTTTTGCAAAAGCAGTGGTTCAGTTGCCCGCCACATTCTTCAACAATTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGGAGGATCACATCCAGTGGCCAGCGGGATCTTGACCAGGTTGCTGGAAGAATTGCTGTTGCTTGTTTA-AGAGAGATGAGTTCATTCAATCTTATGAATACATGAGTTTAGCTCAAACTTATTGGTTTTCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345562" ref_strand="+" ref_description="SGN-E345562 [cTOF-18-F24]">
      <seq>ctacatcagagctgcttccatggcaaggaagatctatttgagaggaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcaagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103298" stop="104985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103509" g_stop="103522" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103602" g_stop="103785" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="198" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104386" g_stop="104691" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="504" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E345562" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103509" e_stop="103522"/>
          <exon e_start="103602" e_stop="103785"/>
          <exon e_start="104386" e_stop="104691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCAGAGCTGGTATGTCTCATCTCCATTATCAGATGAAGGAACTTATCCATTGTTTCTAACTTTTTTTTTTTTTTTTGATGTATGGCAGCTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTG</genome_strand>
        <mrna_strand>CTACATCAGAGCTG...............................................................................CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234758" ref_strand="+" ref_description="SGN-E234758 [cLEL-6-N6](-)">
      <seq>gaggtattggtgttggtggtttccgaagaatctatggtggaaaccagaggaatggaagccgtccacgtcacttttgcagagcagtggttcagttgcacgccacattcttcaacagttgcagaacatgaacatcattgactttgagcctaagggcggaaggaggatcacatccagtggtcagcgggatcttgaccaagttgccggaagaattgctgttgcttgttaagagagagatgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="103332" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103632" g_stop="103785" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104386" g_stop="104690" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="458" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="477"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E234758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103632" e_stop="103785"/>
          <exon e_start="104386" e_stop="104690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGGGTAAGTAGTAACCTTTTGCTCTCTAATTAATGCTGAATTTGATGTGTCTCCTTATTCTGTAGTGGTTGTATGAATGAAATCCATTGATCAGTCAGAAACCTGTTTGTTTACATAACTGATGGGGTTTTCTCCTGCTTTTTCTGAGGTTGTTTGTCATGTGATATGAATATATGCGGATGCGTTAATCATTGTATGGAGCCAGCAAAATTTAAGAAAATCACGAGGAGTCTGGCTAGTCTTGCTTAGAAAAAGAGTGATTTCAGTGATAATAATTGTGCTTAAATCAATTAATAAAACTCTCTTTATTTAGGAAAGAGGTCAAAGACAATTGCAAAAAGAGTGACTGCTCCCTTTATAGTAAGACTTTGATATTTGTGAGTGATTGATTAAACAGGGAAACGATAAGAGGTTGCTGACTTTTCAATTGAAAATAACATGGCTTAAATGAATCTAGATGAAGTATTTCACCTTGTTCTGAATGGAGAGACATCCTTATTGCTAGCGAATGCTCACAACTCAACTTTATTAGCTGCATTAAGAATGAAATCGATGAATATCTAGTTATTTGTCTGTCTAATTTAAAATTCTCTCTTTATCTAGCGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCT</genome_strand>
        <mrna_strand>GAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGC-AGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235046" ref_strand="+" ref_description="SGN-E235046 [cLEL-6-N6](-)">
      <seq>tgagttcattcaattttatgaatacatgagttagctcaaacttattgtttctgtttggacctaaatagatttagggtattgttgaattaaattgtggatgttttgccttttcagaattgtctttctcagtatgtcaagttttgcccttttagtaccctgaagtgtgtattgtggcatatgttgcattcaatgcatcattacttcataattatacataaatccctgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0144B17-WWTXM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0144B17.1" temp_strand="+" temp_description="C12HBa0144B17.1  AC213008.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0144B17 upload_account_name:italy">
        <position start="104167" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104467" g_stop="104693" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="228" polyA_stop="243"/>
      <MATCH_line gen_id="C12HBa0144B17.1" gen_strand="+" ref_id="SGN-E235046" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0144B17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104467" e_stop="104693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAG</genome_strand>
        <mrna_strand>TGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>81</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="558" PGL_stop="1098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="558" e_stop="1098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="558" e_stop="1098" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="558" stop="1098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACCACATTTCCATTTTTTTTGTTATTGTGTTTGTGTTTGTATTTCTTGCTTTGACTTCTAATACTAGCACGTACTGAAGATGCAATCTCATTGGCTCCTTGTGTGATGGAACTAAGCAGTCCACCAGAGGATGTCCTAGTTAACTCTTTAATATGAAGAGGCGATAAAATAAGCCTTTTAAAAGGGCCCAAGTCACAAATATCACCTGTTTCATTGAACATATTAGCATGGCAATAAACGTGAACCAGGCGCTGACACCACAAGCAGCACCATACAGGGGAACCCCCAAGAAATGAACTGCTGCACGGCTCTTCACAGTAGCTGCAGAAACAGGATTCATCTGGTTGATCTGCCACCTCTGTCCACCGAACTGCCCATTGGTGTACCACGTGCTTATATCCAAACATTGATACACATTTGCAATCCTTAAGAGCATTCAATGAGCAACTAAGATGAGCTGCTGCACCACAAGTGTTGCAGCAATTAAAAGAACTCTCTGATGCCACCATTGGTCCAAGAGTTTGAGATGGAGACATAG</gDNA_template>
            <first_frame> E  T  T  F  P  F  F  L  L  L  C  L  C  L  Y  F  L  L  *  L  L  I  L  A  R  T  E  D  A  I  S  L  A  P  C  V  M  E  L  S  S  P  P  E  D  V  L  V  N  S  L  I  *  R  G  D  K  I  S  L  L  K  G  P  K  S  Q  I  S  P  V  S  L  N  I  L  A  W  Q  *  T  *  T  R  R  *  H  H  K  Q  H  H  T  G  E  P  P  R  N  E  L  L  H  G  S  S  Q  *  L  Q  K  Q  D  S  S  G  *  S  A  T  S  V  H  R  T  A  H  W  C  T  T  C  L  Y  P  N  I  D  T  H  L  Q  S  L  R  A  F  N  E  Q  L  R  *  A  A  A  P  Q  V  L  Q  Q  L  K  E  L  S  D  A  T  I  G  P  R  V  *  D  G  D  I  </first_frame>
            <second_frame>  K  P  H  F  H  F  F  C  Y  C  V  C  V  C  I  S  C  F  D  F  *  Y  *  H  V  L  K  M  Q  S  H  W  L  L  V  *  W  N  *  A  V  H  Q  R  M  S  *  L  T  L  *  Y  E  E  A  I  K  *  A  F  *  K  G  P  S  H  K  Y  H  L  F  H  *  T  Y  *  H  G  N  K  R  E  P  G  A  D  T  T  S  S  T  I  Q  G  N  P  Q  E  M  N  C  C  T  A  L  H  S  S  C  R  N  R  I  H  L  V  D  L  P  P  L  S  T  E  L  P  I  G  V  P  R  A  Y  I  Q  T  L  I  H  I  C  N  P  *  E  H  S  M  S  N  *  D  E  L  L  H  H  K  C  C  S  N  *  K  N  S  L  M  P  P  L  V  Q  E  F  E  M  E  T  * </second_frame>
            <third_frame>   N  H  I  S  I  F  F  V  I  V  F  V  F  V  F  L  A  L  T  S  N  T  S  T  Y  *  R  C  N  L  I  G  S  L  C  D  G  T  K  Q  S  T  R  G  C  P  S  *  L  F  N  M  K  R  R  *  N  K  P  F  K  R  A  Q  V  T  N  I  T  C  F  I  E  H  I  S  M  A  I  N  V  N  Q  A  L  T  P  Q  A  A  P  Y  R  G  T  P  K  K  *  T  A  A  R  L  F  T  V  A  A  E  T  G  F  I  W  L  I  C  H  L  C  P  P  N  C  P  L  V  Y  H  V  L  I  S  K  H  *  Y  T  F  A  I  L  K  S  I  Q  *  A  T  K  M  S  C  C  T  T  S  V  A  A  I  K  R  T  L  *  C  H  H  W  S  K  S  L  R  W  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="787" stop="990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGNKREPGADTTSSTIQGNPQEMNCCTALHSSCRNRIHLVDLPPLSTELPIGVPRAYIQTLIHICNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28637" PGL_stop="27858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28637" e_stop="27858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="28637" e_stop="27858" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28637" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28636" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCAAAAGCGCTGCAACCCTCTCTTCTGCATCCTTTCTCGTTCCGGTTAGAAGCAGGAGGTGGAGGACCACTAGTTAACGCCCCTTCCCTCTCCTCTCCTCTCTCCTGCGAGAAAGCAATAGTCATCTACTGGTGAAACAACAAGCAGTTCTGATGACGCGAGCCATCAGCGAGAGCGCAAAACCAGTTTCAGTTGCGATCGGCGAAGAGCTCCCGCAAAGCAACAACACTTTGGCAAGTAGTCGCGAGCCACCACCAACAGCAGGTGTGGCCAATCACCAGCGAAACTCCATGGGAACGATAGCTTCGACCAGCGACGCAACAATAACAACGAGGTTGTTCAAGCTTATAATCCCAGTCATGAAGTGTATGTCGATGGAGTTTGTTTAGAATATTGAGTTTTGTTAAAAGACAGATGTTCAACAAATACATCTTGATAAGTTTCGATTAATTCTAAAGCCTGCATTTTCAATTCTTTGGTGATTTTCATTTAAGTGGGTATGTTTAAGTTGAATTTCACATATCCTCTTATTTTAATGGTATTTTCTGTGATTAATATATAGTGATTTTAGTTTTCTTGTGAAAACATGTTTAGGTTGAGATTCTCTATTCAAGGTTTTTTTCATCACTTCTATCATGATCTGGCTGTAATTTGTGATGTTTCTTATAGTGTACTGGTTGTAATGAGTCTGTACTCTAACATATGGGTTGCACATTCTTGTTATTTATATAATAAAGTCTAGTGTATGATTTCCTTTGATTAATTTCTTCTTTCTAAA</gDNA_template>
            <first_frame> L  Q  K  R  C  N  P  L  F  C  I  L  S  R  S  G  *  K  Q  E  V  E  D  H  *  L  T  P  L  P  S  P  L  L  S  P  A  R  K  Q  *  S  S  T  G  E  T  T  S  S  S  D  D  A  S  H  Q  R  E  R  K  T  S  F  S  C  D  R  R  R  A  P  A  K  Q  Q  H  F  G  K  *  S  R  A  T  T  N  S  R  C  G  Q  S  P  A  K  L  H  G  N  D  S  F  D  Q  R  R  N  N  N  N  E  V  V  Q  A  Y  N  P  S  H  E  V  Y  V  D  G  V  C  L  E  Y  *  V  L  L  K  D  R  C  S  T  N  T  S  *  *  V  S  I  N  S  K  A  C  I  F  N  S  L  V  I  F  I  *  V  G  M  F  K  L  N  F  T  Y  P  L  I  L  M  V  F  S  V  I  N  I  *  *  F  *  F  S  C  E  N  M  F  R  L  R  F  S  I  Q  G  F  F  H  H  F  Y  H  D  L  A  V  I  C  D  V  S  Y  S  V  L  V  V  M  S  L  Y  S  N  I  W  V  A  H  S  C  Y  L  Y  N  K  V  *  C  M  I  S  F  D  *  F  L  L  S  K </first_frame>
            <second_frame>  S  K  S  A  A  T  L  S  S  A  S  F  L  V  P  V  R  S  R  R  W  R  T  T  S  *  R  P  F  P  L  L  S  S  L  L  R  E  S  N  S  H  L  L  V  K  Q  Q  A  V  L  M  T  R  A  I  S  E  S  A  K  P  V  S  V  A  I  G  E  E  L  P  Q  S  N  N  T  L  A  S  S  R  E  P  P  P  T  A  G  V  A  N  H  Q  R  N  S  M  G  T  I  A  S  T  S  D  A  T  I  T  T  R  L  F  K  L  I  I  P  V  M  K  C  M  S  M  E  F  V  *  N  I  E  F  C  *  K  T  D  V  Q  Q  I  H  L  D  K  F  R  L  I  L  K  P  A  F  S  I  L  W  *  F  S  F  K  W  V  C  L  S  *  I  S  H  I  L  L  F  *  W  Y  F  L  *  L  I  Y  S  D  F  S  F  L  V  K  T  C  L  G  *  D  S  L  F  K  V  F  F  I  T  S  I  M  I  W  L  *  F  V  M  F  L  I  V  Y  W  L  *  *  V  C  T  L  T  Y  G  L  H  I  L  V  I  Y  I  I  K  S  S  V  *  F  P  L  I  N  F  F  F  L   </second_frame>
            <third_frame>   P  K  A  L  Q  P  S  L  L  H  P  F  S  F  R  L  E  A  G  G  G  G  P  L  V  N  A  P  S  L  S  S  P  L  S  C  E  K  A  I  V  I  Y  W  *  N  N  K  Q  F  *  *  R  E  P  S  A  R  A  Q  N  Q  F  Q  L  R  S  A  K  S  S  R  K  A  T  T  L  W  Q  V  V  A  S  H  H  Q  Q  Q  V  W  P  I  T  S  E  T  P  W  E  R  *  L  R  P  A  T  Q  Q  *  Q  R  G  C  S  S  L  *  S  Q  S  *  S  V  C  R  W  S  L  F  R  I  L  S  F  V  K  R  Q  M  F  N  K  Y  I  L  I  S  F  D  *  F  *  S  L  H  F  Q  F  F  G  D  F  H  L  S  G  Y  V  *  V  E  F  H  I  S  S  Y  F  N  G  I  F  C  D  *  Y  I  V  I  L  V  F  L  *  K  H  V  *  V  E  I  L  Y  S  R  F  F  S  S  L  L  S  *  S  G  C  N  L  *  C  F  L  *  C  T  G  C  N  E  S  V  L  *  H  M  G  C  T  F  L  L  F  I  *  *  S  L  V  Y  D  F  L  *  L  I  S  S  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28558" stop="28247"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPFPLLSSLLRESNSHLLVKQQAVLMTRAISESAKPVSVAIGEELPQSNNTLASSREPPPTAGVANHQRNSMGTIASTSDATITTRLFKLIIPVMKCMSMEFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45729" PGL_stop="46527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45729" e_stop="46527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="45729" e_stop="46527" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45729" stop="46527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGTAGCTCAACCAATTTTTCCTTTTCTATTGCTGTCAAATGTATACTGACTCGGGTTTCTCTAACCGACTCGTCATCTCCAAAGTTGACTATCTCTGTCTCATCCAGGTTGGGATTTTTATTATCTGCAAGGTTCCTCAAGTCGTTAGTAAGGTGTTCAGGCATCATAGTTTCCTCATCATATTCTTCACATTCATCTTCATTGACTTTACTTAGTTCATCGTGTTCGTGACATGTCATGACATTGGCAAGTTTAGATTCATTTTTATTGAAAAGAAAATAAAGCAATCATGTTAGATAGAAAGAATTTAAATGTATATATCAGAAAGTAATTTGCAGAGGTAAGATAAAAAATAAACGAGGTTTTTCATTGGAAAAAAGGTGTACAAACTTTGATCATGACTCATGTCAATGTGAGTCCTTTCTTTTTTAAACATTACGATGAAAATAAAGTGACATAAAAGTTTATTTCGGGCCTCGTCCGAACTACACCGATTTTCAAAAGTAAAACTTCAAATTCTTGTCTTTGTCTACCAAGCAATTCGATGAATCATAAGTGGAGTGGCCACCCAATTCTGTAGCATCTCTTCAGGTTTGGCATCTCGGATGGTGGGTGTCGCAGTGCATTCTTCCAAGATCACAGCACAATCTCCTTCATCAAAAAATCATCCCATCCCTTCCACTAGACCATCACTCTCGGACTCTAAAGCTTTAGCAACAAATAACTGGTACAATTCTGGAATAGGCTTTGGTATATCAAGGCCATGTTTCTTCCTTGCTTCTGCTTCGAATAATTCC</gDNA_template>
            <first_frame> *  V  A  Q  P  I  F  P  F  L  L  L  S  N  V  Y  *  L  G  F  L  *  P  T  R  H  L  Q  S  *  L  S  L  S  H  P  G  W  D  F  Y  Y  L  Q  G  S  S  S  R  *  *  G  V  Q  A  S  *  F  P  H  H  I  L  H  I  H  L  H  *  L  Y  L  V  H  R  V  R  D  M  S  *  H  W  Q  V  *  I  H  F  Y  *  K  E  N  K  A  I  M  L  D  R  K  N  L  N  V  Y  I  R  K  *  F  A  E  V  R  *  K  I  N  E  V  F  H  W  K  K  G  V  Q  T  L  I  M  T  H  V  N  V  S  P  F  F  F  K  H  Y  D  E  N  K  V  T  *  K  F  I  S  G  L  V  R  T  T  P  I  F  K  S  K  T  S  N  S  C  L  C  L  P  S  N  S  M  N  H  K  W  S  G  H  P  I  L  *  H  L  F  R  F  G  I  S  D  G  G  C  R  S  A  F  F  Q  D  H  S  T  I  S  F  I  K  K  S  S  H  P  F  H  *  T  I  T  L  G  L  *  S  F  S  N  K  *  L  V  Q  F  W  N  R  L  W  Y  I  K  A  M  F  L  P  C  F  C  F  E  *  F  </first_frame>
            <second_frame>  K  *  L  N  Q  F  F  L  F  Y  C  C  Q  M  Y  T  D  S  G  F  S  N  R  L  V  I  S  K  V  D  Y  L  C  L  I  Q  V  G  I  F  I  I  C  K  V  P  Q  V  V  S  K  V  F  R  H  H  S  F  L  I  I  F  F  T  F  I  F  I  D  F  T  *  F  I  V  F  V  T  C  H  D  I  G  K  F  R  F  I  F  I  E  K  K  I  K  Q  S  C  *  I  E  R  I  *  M  Y  I  S  E  S  N  L  Q  R  *  D  K  K  *  T  R  F  F  I  G  K  K  V  Y  K  L  *  S  *  L  M  S  M  *  V  L  S  F  L  N  I  T  M  K  I  K  *  H  K  S  L  F  R  A  S  S  E  L  H  R  F  S  K  V  K  L  Q  I  L  V  F  V  Y  Q  A  I  R  *  I  I  S  G  V  A  T  Q  F  C  S  I  S  S  G  L  A  S  R  M  V  G  V  A  V  H  S  S  K  I  T  A  Q  S  P  S  S  K  N  H  P  I  P  S  T  R  P  S  L  S  D  S  K  A  L  A  T  N  N  W  Y  N  S  G  I  G  F  G  I  S  R  P  C  F  F  L  A  S  A  S  N  N  S </second_frame>
            <third_frame>   S  S  S  T  N  F  S  F  S  I  A  V  K  C  I  L  T  R  V  S  L  T  D  S  S  S  P  K  L  T  I  S  V  S  S  R  L  G  F  L  L  S  A  R  F  L  K  S  L  V  R  C  S  G  I  I  V  S  S  S  Y  S  S  H  S  S  S  L  T  L  L  S  S  S  C  S  *  H  V  M  T  L  A  S  L  D  S  F  L  L  K  R  K  *  S  N  H  V  R  *  K  E  F  K  C  I  Y  Q  K  V  I  C  R  G  K  I  K  N  K  R  G  F  S  L  E  K  R  C  T  N  F  D  H  D  S  C  Q  C  E  S  F  L  F  *  T  L  R  *  K  *  S  D  I  K  V  Y  F  G  P  R  P  N  Y  T  D  F  Q  K  *  N  F  K  F  L  S  L  S  T  K  Q  F  D  E  S  *  V  E  W  P  P  N  S  V  A  S  L  Q  V  W  H  L  G  W  W  V  S  Q  C  I  L  P  R  S  Q  H  N  L  L  H  Q  K  I  I  P  S  L  P  L  D  H  H  S  R  T  L  K  L  *  Q  Q  I  T  G  T  I  L  E  *  A  L  V  Y  Q  G  H  V  S  S  L  L  L  L  R  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46279" stop="46527"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISGVATQFCSISSGLASRMVGVAVHSSKITAQSPSSKNHPIPSTRPSLSDSKALATNNWYNSGIGFGISRPCFFLASASNNS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45731" stop="45961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSTNFSFSIAVKCILTRVSLTDSSSPKLTISVSSRLGFLLSARFLKSLVRCSGIIVSSSYSSHSSSLTLLSSSCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45736" stop="45945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNQFFLFYCCQMYTDSGFSNRLVISKVDYLCLIQVGIFIICKVPQVVSKVFRHHSFLIIFFTFIFIDFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="102888" PGL_stop="104704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102888" e_stop="103052"/>
            <exon e_start="103432" e_stop="103522"/>
            <exon e_start="103602" e_stop="103785"/>
            <exon e_start="104386" e_stop="104704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.885"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="102888" e_stop="103052" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103053" i_stop="103431" i_length="379"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103432" e_stop="103522" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103523" i_stop="103601" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103602" e_stop="103785" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="103786" i_stop="104385" i_length="600"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104386" e_stop="104704" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102888" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102901" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102927" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102934" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102934" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102936" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102938" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102940" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102940" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102940" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102941" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102942" stop="103052"/>
              <exon start="103432" stop="103522"/>
              <exon start="103602" stop="103785"/>
              <exon start="104386" stop="104629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102943" stop="103052"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103632" stop="103785"/>
              <exon start="104386" stop="104690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104467" stop="104693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACTATAAACCCTAGCATCCATTCTGAGTAATTCTCTTAGGAACCCTTGCTGGAGAGTGGAGAAAGATCTGCAGCGAAGATGGAGGCAGCAAGAAGTGTGAAAGATGTTTCCCCCCATGATTTTGTCAAGGCTTATGCCGCTCATCTCAAGCGCTCCGGAAAG : ATGGAGCTTCCTGAATGGACTGATATAGTTAAGACTGGTAAGCTAAAGGAGCTTGCCCCATATGATGCTGATTGGTACTACATCAGAGCTG : CTTCCATGGCAAGGAAGATCTATTTGAGAGGAGGTATTGGTGTTGGTGGTTTCCGAAGAATCTATGGTGGAAACCAGAGGAATGGAAGCCGTCCACGTCACTTTTGCAAGAGCAGTGGTTCAGTTGCACGCCACATTCTTCAACAGTTGCAGAACATGAACATCATTGACTTTGAGCCTAAGGG : CGGAAGGAGGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAGAGATGAGTTCATTCAATTTTATGAATACATGAGTTAGCTCAAACTTATTGTTTCTGTTTGGACCTAAATAGATTTAGGGTATTGTTGAATTAAATTGTGGATGTTTTGCCTTTTCAGAATTGTCTTTCTCAGTATGTCAAGTTTTGCCCTTTTAGTACCCTGAAGTGTGTATTGTGGCATATGTTGCATTCAATGCATCATTACTTCATAATTATACATAAATCCCTGAGATTCAGTGCTT</gDNA_template>
            <first_frame> N  T  I  N  P  S  I  H  S  E  *  F  S  *  E  P  L  L  E  S  G  E  R  S  A  A  K  M  E  A  A  R  S  V  K  D  V  S  P  H  D  F  V  K  A  Y  A  A  H  L  K  R  S  G  K  :  M  E  L  P  E  W  T  D  I  V  K  T  G  K  L  K  E  L  A  P  Y  D  A  D  W  Y  Y  I  R  A   : A  S  M  A  R  K  I  Y  L  R  G  G  I  G  V  G  G  F  R  R  I  Y  G  G  N  Q  R  N  G  S  R  P  R  H  F  C  K  S  S  G  S  V  A  R  H  I  L  Q  Q  L  Q  N  M  N  I  I  D  F  E  P  K  G :   G  R  R  I  T  S  S  G  Q  R  D  L  D  Q  V  A  G  R  I  A  V  A  C  *  E  R  D  E  F  I  Q  F  Y  E  Y  M  S  *  L  K  L  I  V  S  V  W  T  *  I  D  L  G  Y  C  *  I  K  L  W  M  F  C  L  F  R  I  V  F  L  S  M  S  S  F  A  L  L  V  P  *  S  V  Y  C  G  I  C  C  I  Q  C  I  I  T  S  *  L  Y  I  N  P  *  D  S  V  L </first_frame>
            <second_frame>  T  L  *  T  L  A  S  I  L  S  N  S  L  R  N  P  C  W  R  V  E  K  D  L  Q  R  R  W  R  Q  Q  E  V  *  K  M  F  P  P  M  I  L  S  R  L  M  P  L  I  S  S  A  P  E  R :   W  S  F  L  N  G  L  I  *  L  R  L  V  S  *  R  S  L  P  H  M  M  L  I  G  T  T  S  E  L  :  L  P  W  Q  G  R  S  I  *  E  E  V  L  V  L  V  V  S  E  E  S  M  V  E  T  R  G  M  E  A  V  H  V  T  F  A  R  A  V  V  Q  L  H  A  T  F  F  N  S  C  R  T  *  T  S  L  T  L  S  L  R   : A  E  G  G  S  H  P  V  V  S  G  I  L  T  K  L  P  E  E  L  L  L  L  V  K  R  E  M  S  S  F  N  F  M  N  T  *  V  S  S  N  L  L  F  L  F  G  P  K  *  I  *  G  I  V  E  L  N  C  G  C  F  A  F  S  E  L  S  F  S  V  C  Q  V  L  P  F  *  Y  P  E  V  C  I  V  A  Y  V  A  F  N  A  S  L  L  H  N  Y  T  *  I  P  E  I  Q  C   </second_frame>
            <third_frame>   H  Y  K  P  *  H  P  F  *  V  I  L  L  G  T  L  A  G  E  W  R  K  I  C  S  E  D  G  G  S  K  K  C  E  R  C  F  P  P  *  F  C  Q  G  L  C  R  S  S  Q  A  L  R  K   : D  G  A  S  *  M  D  *  Y  S  *  D  W  *  A  K  G  A  C  P  I  *  C  *  L  V  L  H  Q  S  C :   F  H  G  K  E  D  L  F  E  R  R  Y  W  C  W  W  F  P  K  N  L  W  W  K  P  E  E  W  K  P  S  T  S  L  L  Q  E  Q  W  F  S  C  T  P  H  S  S  T  V  A  E  H  E  H  H  *  L  *  A  *  G  :  R  K  E  D  H  I  Q  W  S  A  G  S  *  P  S  C  R  K  N  C  C  C  L  L  R  E  R  *  V  H  S  I  L  *  I  H  E  L  A  Q  T  Y  C  F  C  L  D  L  N  R  F  R  V  L  L  N  *  I  V  D  V  L  P  F  Q  N  C  L  S  Q  Y  V  K  F  C  P  F  S  T  L  K  C  V  L  W  H  M  L  H  S  M  H  H  Y  F  I  I  I  H  K  S  L  R  F  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0144B17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102930" stop="103052"/>
                    <exon start="103432" stop="103522"/>
                    <exon start="103602" stop="103785"/>
                    <exon start="104386" stop="104458"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLLESGERSAAKMEAARSVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTGKLKELAPYDADWYYIRAASMARKIYLRGGIGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLQNMNIIDFEPKGGRRITSSGQRDLDQVAGRIAVAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 221 chains have been computed
$ 
$ memory statistics:
$ 165816 bytes spliced alignments in total
$ 81 spliced alignments have been stored
$ 2047 bytes was the average size of a spliced alignment
$ 10240 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 240 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 02:48:21
-->
