<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:45:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330573" ref_strand="+" ref_description="SGN-U330573        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G05990.1 | Symbol: None | calcium-binding protein, putative, strong similarity to calcium-binding protein (Lotus japonicus) GI:18413495; contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr1:1818446-1819039 FORWARD | Aliases: T21E18.4, T21E18_4 (evalue: 8e-17, score=84) genbank/nr: gi|15221358|ref|NP_172089.1| calcium-binding protein, putative [Arabidopsis thaliana] gi|25295760|pir||H86194 hypothetical protein [imported] - Arabidopsis thaliana gi|8810461|gb|AAF80122.1| Contains similarity to a calcium-binding protein from Lotus japonicus gi|6580549 and contains a EF hand PF|00036 domain.  EST gb|T46471 comes from this gene. [Arabidopsis thaliana] gi|12083340|gb|AAG48829.1| putative calcium-binding protein [Arabidopsis thaliana](evalue: 5e-15, score=84)">
      <seq>caaaacaaaagatgttgacactattaaccattcttttcttagcatttctcttcattattggccttatcacaacaattttcaatttcccaactaacaagttccactctttaattcaatcaatctcactagaatctcaacctctccaagaaaggaccataacaacacccccatcatcatcatcaacaacaacatccatggttgatcaaaagaaggtgaaatgaatgaagaagaagttgctaataaagagagagatcttaaagaagcttttgatgtgtttgatcatgataaagatggattaatatcagaagaagaattgagtaagatactttcatctttaggaatgaaagaaggtaagaaattggatcattgtaaagaaatgataaagaaagttgatgttgatggtgatggaatggtgaactttgatgagttcaagaagatgatgaaagcttgtggaactcttgttccattttcttaaagcaaccatataccaattgaagaaaattaaccttttgttacaagctatacaaattactagtattctttttgtaatctctctcttgttataaactcgagatgataaactcgttctttctattcttctccattttaatactgaacttagttcgcttgatgcagaacttggatttgtactgcctaatgttatgatgatatactagtattcattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="9362" stop="10903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9662" g_stop="9858" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9859" i_stop="10108" i_length="250">
            <donor d_prob="0.658" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10109" g_stop="10603" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="689" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U330573" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9662" e_stop="9858"/>
          <exon e_start="10109" e_stop="10603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAAAAGATGTTGACACTATTAACCATTCTTTTCTTAGCATTTCTCTTCATTATTGGCCTTATCACAACAATTTTCAATTTCCCAACTAACAAGTTCCACTCTTTAATTCAATCAATCTCACTAGAATCTCAACCTCTCCAAGAAAGGACCATAACAACACCCCCATCATCATCATCAACAACAACATCCATGGTTGATCAAAAGAAGGCAAAAAGCTTTAACAATTACAACAAAGTTGAACTAAGGGGTATATTTGCAACTTTTGACAAGAACAATGATGGTTACATAACAAAGCAAGAATTGAAGCTATCTCTAAAGAATATTGGGATATTAATGGAGGATAAAGATATTGTTGATATGGTTGAGAAAGTTGATACAAACAAAGATGGTTTAATTGATCTTGATGAGTTTTGTGAACTTTGTCATACTTTCTTGGGAATAGATGGAGTGGAACAAGAAGGTGAAATGAATGAAGAAGAAGTTGCTAATAAAGAGAGAGATCTTAAAGAAGCTTTTGATGTGTTTGATCATGATAAAGATGGATTAATATCAGAAGAAGAATTGAGTAAGATACTTTCATCTTTAGGAATGAAAGAAGGTAAGAAATTGGATCATTGTAAAGAAATGATAAAGAAAGTTGATGTTGATGGTGATGGAATGGTGAACTTTGATGAGTTCAAGAAGATGATGAAAGCTTGTGGAACTCTTGTTCCATTTTCTTAAAGCAACCATATACCAATTGAAGAAAATTAACCTTTTGTTACAAGCTATACAAATTACTAGTATTCTTTTTGTAATCTCTCTCTTGTTATAAACTCGAGATGATAAACTCGTTCTTTCTATTCTTCTCCATTTTAATACTGAACTTAGTTCGCTTGATGCAGAACTTGGATTTGTACTGCCTAATGTTATGATGATATACTAGTATTCATTCATT</genome_strand>
        <mrna_strand>CAAAACAAAAGATGTTGACACTATTAACCATTCTTTTCTTAGCATTTCTCTTCATTATTGGCCTTATCACAACAATTTTCAATTTCCCAACTAACAAGTTCCACTCTTTAATTCAATCAATCTCACTAGAATCTCAACCTCTCCAAGAAAGGACCATAACAACACCCCCATCATCATCATCAACAACAACATCCATG..........................................................................................................................................................................................................................................................GTTGA-T-CAA-AAGAAGGTGAAATGAATGAAGAAGAAGTTGCTAATAAAGAGAGAGATCTTAAAGAAGCTTTTGATGTGTTTGATCATGATAAAGATGGATTAATATCAGAAGAAGAATTGAGTAAGATACTTTCATCTTTAGGAATGAAAGAAGGTAAGAAATTGGATCATTGTAAAGAAATGATAAAGAAAGTTGATGTTGATGGTGATGGAATGGTGAACTTTGATGAGTTCAAGAAGATGATGAAAGCTTGTGGAACTCTTGTTCCATTTTCTTAAAGCAACCATATACCAATTGAAGAAAATTAACCTTTTGTTACAAGCTATACAAATTACTAGTATTCTTTTTGTAATCTCTCTCTTGTTATAAACTCGAGATGATAAACTCGTTCTTTCTATTCTTCTCCATTTTAATACTGAACTTAGTTCGCTTGATGCAGAACTTGGATTTGTACTGCCTAATGTTATGATGATATACTAGTATTCATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318370" ref_strand="+" ref_description="SGN-U318370        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:12094126-12095787 FORWARD | Aliases: F18O9.50, F18O9_50(evalue: 1e-67, score=254) genbank/nr: gi|18421340|ref|NP_568521.1| expressed protein [Arabidopsis thaliana] gi|23297090|gb|AAN13090.1| unknown protein [Arabidopsis thaliana](evalue: 1e-65, score=254)">
      <seq>aagctgtaatctctctcgtgaagagagagaatttaagagaaaaattattattttttttctttttatttacaaaatattattcatagattcatagcaaattttagcaattcgaccatatttttttttctttatttttttgattttttaatttttttttgaatttataaatctgcatgatcggaacgggaaaagaggaacttttgatcggagaaatctgaaagaggaatttttttccggcacatcatgtctgctatattgtgcgggaagagatcgaatttgtttgaggattttcagtcgtcgtcgtctgcgtcaacgccggtttcgaagaggattcgccgtaatttttctccggcgaggtctaattctgattccgatcgtgttttgtgtggtaatttgattgcatcgtcggcactcgatcatcttctcatgattttctctgacacggacaagcagttggttgagagagcacttgaagaatccggtgatgatctagattctgctatcaaacgcctgaatgagctctgcttgggatctggtgataatctgaggcctgtggcaggaagctctggtgctacacatgagttcagcagccaggtttttcctcaaggtgtggctacaactaatggtgagaccccatctgcagaggatttatcttctgcagaagtggtgcatttgcagggtacagaatgggtggatctttttgttggagagatgatgagtgcatcaaacatagatgatgctaaagcgcgtgcttcacgagctctggaggcttttgagaagaccatatgtgctcgtgcaacagaggcagcctgccgtttccagaaggagaatatgatgctcaagcagcagttagaagctcttgtacaagagaatgctattttcaagcgagcagttgccatccagcatgagcgtcaaaaggaattcgagaatagagggaacgagttgaatcagctgaagcagtcggtggctcagtaccaggagcagcttagaacccttgaggtcaataactatgctctcacgatgcacctcaagcaagctcaacaaagcaacaactccattccagggcgtttcaaccccgatgtcttttagtatgtgtcatgtccctattggctgtgtaacatacataggtagcaacagtagtatcctatcgtcatagtagcagcaagtgtttcctagagatgaatgacgatattaagctagaacttctgtctattgatcaaagtgcccttctgcagttactagacaaagggtactttgttctgttcatacaagtttttatttgtttttctgctgttgtttcaattagagtatccaaagttcatacagttctattcttcttcttctgcttttaagaagatgttcaacacatgattgttatgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccgggggggggggcgggaacccatttcccccaaaagggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="18239" stop="10599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17939" g_stop="17487" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17486" i_stop="14446" i_length="3041">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14445" g_stop="14292" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="607" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14291" i_stop="12471" i_length="1821">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12470" g_stop="12253" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="825" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12252" i_stop="11668" i_length="585">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11667" g_stop="11494" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="999" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11493" i_stop="11284" i_length="210">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11283" g_stop="10900" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1383" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U318370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1383</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17939" e_stop="17487"/>
          <exon e_start="14445" e_stop="14292"/>
          <exon e_start="12470" e_stop="12253"/>
          <exon e_start="11667" e_stop="11494"/>
          <exon e_start="11283" e_stop="10900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGTAATCTCTCTCGTGAAGAGAGAGAATTTAAGAGAAAAATTATTATTTTTTTTCTTTTTATTTACAAAATATTATTCATAGATTCATAGCAAATTTTAGCAATTCGACCATATTTTTTTTTCTTAATTTTTTTGATTTTTTAATTTTTTTTTGAATTTATAAATCTGCATGATCGGAACGGGAAAAGAGGAACTTTTGATCGGAGAAATCTGAAAGAGGAATTTTTTTCCGGCACATCATGTCTGCTATATTGTGCGGGAAGAGATCGAATTTGTTTGAGGATTTTCAGTCGTCGTCGTCTGCGTCAACGCCGGTTTCGAAGAGGATTCGCCGTAATTTTTCTCCGGCGAGGTCTAATTCTGATTCCGATCGTGTTTTGTGTGGTAATTTGATTGCATCGTCGGCACTCGATCATCTTCTCATGATTTTCTCTGACACGGACAAGCAGGTTTACTTCTTCATCTTTTTTTAATTGTTTCAATCAATTGTTTAGAGTTTCATATTGTTTATGAGATTTTTCGTTGTAAAATTATATAATCTGTTGGGCAAAAGTATCGGATAAGCTTGATTTATCTGTTTTTTTGGCTTTTGATATGGCAAGAGTAAAGCAATTGTAAAAATCCTTTAGTCTGATTGTACTTGACAAGCAATGTTTCCATAAAAATATTGGATTTGTGAGTTATTCAGTATCTGTGCTGATAGTTGGAGGTAGCAGGTACCGGTGGAATCAGTCTAGGTGCGTGCAAGTTGGCATTATAAAAAAGAAGAAGCTAGTTTTGAACTTGTCTTTATAGAAAAATAAAAGTTACTATTTTGTAGAAGCTCTGTTCGAAAAAATGCTTACTGCATCCTTCATTTCGCTATTTTGGGGTACGGAGGGTACCTTTTGAGTGATCTGGTTTGTTTGTTGATGTATTTCTTATGATGTTGTAAGTGGGAACTAGAGGAATGTGCTTTTGATTAATGAGTTAGCTGATGCTGATTTCCGGGCACACCTTTTGCATAAACTGGACGAGGTGTGTAACTAAAGGGGTAGCTTCATGTACTTCCTTGTTGAGGATTATGGTGGTTTTGTAATTGAATTCGCTAGATGAATATTTGCCTATAATTAGCTGTCTGAAGTCCTATTTTATGATTGTTTTTATCCTTTTAGTGTTGAACTTCTTGCTGACTTCTCATGGCATACAACCAGCATAATTATTTCAAGATTGTCTTCCGTCTGCTCCTTATTGTTTTAAGTTAGACTCCTGGAGATCTATCACTTTACACTGTAGGAATTTGTGCTTTCATTTGTGAGGCTAACATATTGTCCTAGTCTTTGAACCGGGCCGATAAGTTGATTGATTAACTGCACTTTCTCTGCAAGTCTCCTCCAATGGAGGAAGAGGGAAGGGAGCAGAAGAGTTAGCTAGCTTTTAGTTAGATTTCAGTATATGAATTGAAGCCCTTTTGTTTGATATGTTCTGTAATTTCAACAACTTATATATGTCATGAAGTTTCTCTTCTGGCCTGTAACTTTGAATTTACAAATAAAAATGAGTAAATGAAAAAGGGAAGATAGGCTTTGCAAATACTTAACAAATTTATAGCAGTGCTGTATATCGAGTCTCCTGTAATCAAGTTAAAGAACATCTTTAGATAAAAGTAGAAGATTGTTTTAAGGAACAGACTAAACTAACATAATTTTTTCTATATAAAGTAATAATTTACTGAAGTAGGTACAAAACAATGAGTGTAGCAAGTAGTATACCAAAAATTAGAAAACCTTATAAAAGATATGGTTCTCCCGAAACAACACCTAATCATCTATACATATGGGAACCTCCTGGGTGCACTAAACTAACATAATATAGAATTGGAAAAGTAAAAGTGGCCTAAGCGATGCCACATTATTATTTTTTGGTTCTTGTAACTTCATGTGGTGTGTTAATACACGGTGTGAAGTGCTGGATATTTGTAGGAAATAAACATGGAATTCGGTGGAGAAAACACACACGAAAAATCAGTTAAACTTTGTTGGGTCTATCTGTACCTCGTTACCAGGTATTTTTTGTTCATTTGGATGGAATTCCTAACATCCATCAAGGACTTAATTTTTGACAAGTGGTAGGTTCTAGAACCTCTTAGTGAGAAAAAACCAAAATTGTCCCTTAAGTTTGGACTCTGAATCAAAATCATCCCTATTCTATTATATGGAGCAGAAATAGTCCCTTAAGTATGTATAATTAGCACATTTTTAGAATGACGACACAAAGAGATAGGAAAGAAAGAGTGTGGTGTGAACAACACGTGAGTATGCTTATATAATTAGCACACTTTTACAATGACGACACGAAGAGGTAGGAAAGAAAGAGAGTGGTGTAAACAACACGTGAGTATGCATAATTAGCACACAATTTTTGAACATCAGCAGTGGCAAAGTAGTTGTGTTCTTTACTTTTGTTATTATTATCATCGTTGTCATTATTTATTTTTTGTTCTCAATCAATCAACTATACCTTTAATTTTATATTATTCCAAATTAGTCGGAGTCGGTTGTATGAGTCTTGTATCCATTCACTCAGGTCTATTTCATTCAAATGATAAATAATTCGTCTTTGAAGGTAAATTAGGGGGTTTCTCTAGAGCTAGAGGTTCTTTAGGCCTCACACTTCTTATCCCATATAGTTTTACAAGTCTATGACTAGGATAAAAAGAACTTTGACACAAATTATGTGGTTTTAATCACTCATTTGCTAAAAGTGTTGCAAAATTAATGAATGCTTACTAGAGTTGCTAATCCACCTACTTTAGGTGTGACAATAATAAAAGAATGATGGAAATGATATAAGGGTGTCAAAACCAATAAAAGTTCATAGGGTGAAAAAAGATTAGCGTTTGTTCGAAAAGAACAAGCGTCATGTTTTATCTTGTAACATAACATGATATATTGAGGAACCGTCAAGTACAACATTCCAAATTTCCTTTTCACTTAAGAAGAATAGAAAAAGTGCATCCTTCTCAGGGATACTGTTAATGCATATCATATATGATTTTGTCGGTCGACTCTTTAGCTTACGTTACAAAATAGAAGGCAAATACCAATAAGGGAGAAGAAGTTGTTTCTTTTGTTTCCTGCTGGTGGAGTCAATTTTACTTCAGTTGATCTCTCGCCGTGCAATTTCAAAACTCCTCTTTGCATTTCTTTTGATGACATAAGTTGTTGATTTTTGAATGTGCATTCTGGTTGATTTTTGAATGTGCATTCTGGTAGTCTAGGAGGATTGCTATCAATTTTGCGTTCCAAATGGTATGTGATCTGCTTACCGTCATCTTGTGATATCACTGATGCATCTAACATTTGTTGTTGTTTTTTTATTTAAAAGAATTTCCATGTTTAACTCTTCAATTTCGGGCATGAAAACATTTATTTGCATTAGATATCTCGCATTTTATCTTCTTTATTTACCTTAAAAAGAGAAAACTTAAGCTAGAGATTTGATTTTTTAGTTGGTTGAGAGAGCACTTGAAGAATCCGGTGATGATCTAGATTCTGCTATCAAACGCCTGAATGAGCTCTGCTTGGGATCTGGTGATAATCTGAGGCCTGTGGCAGGAAGCTCTGGTGCTACACATGAGTTCAGCAGCCAGGTTTTTCCTCAAGGTGCACATTGATTTTTTTTTGTTTGTTTTTGATTGGTGATTGATTATTCCCCCTTTTGGTGTTGTTGCCTTGACTGAGATCATTTTAGAGATCACTTTTTCAACTTCCTACCCATTGTAGTATGCTTTAGTGTTGATCTTTTTGTAATGCTCAGCAAATCCATATGTTAATTCTTTGGTGTAAGCAGCCACTATTGGAGTGCCGTCCTGCTCCCTGCTAACTCAGGTGCTTTGTGCACTGAATTTCCTTTTTTTAAACATTCTTGTATAAGGTATAATAATCCCAGGATAATATGCAGGATTATTTCTGTGTTTGGTTGGAGGTATTAGGTAGTCCTTGGATTATTTATCCACCAATTACCATAATGATGTGATAATCTATTCCATATACATGGTGGGATAACTTATCCCAGGATAACATGTTCCCAACCAAATGACCCTTGAATCTTTTGTAATTACTTTTTTGATGTAATCATGACACTTCTAAGTGTTGGTTTTGACATCAATAATACTTAGAATTTTAACAAACAAAAAACTCCACATGATGTCATCATTCATCTATTTTAAATTCTGCCCTTTCTTACGCCAAGTACTGCACTTTATTGATTTTTCCATTTTCTAAAATGTTTGTCAGTGTCCTGTCAACTCACCTACTTGACTACTTCTGCTCTATAACATGTAGCAATTTTGGAGATATTTCAATTGCGAATGTTCAAGTAGCTTATTATCATTTTAATGTTTCACAATTTGTGGTTTTTGTTCTTAAATTTAGCATGTGGTCACTTGTGGTCCATATTATTAACTTGTCATCTTGCTTTGTTTCGGCAATTTCATACTTGTAAAGTTGCTTGATATTTATGGTGGAGCTTTATCTGCTTCTTTGCTTGCGCTAACAAACCACCATTTTATGTATCTTAACCCAACTAACTGCTGAAGTATCTAATAGCATGGTCGTTCTTGTGATAGCTTCATCTCTTTAAAATTTCTACCTTTAATGATTATTCTTTGTATAAGCTTATACAGACATTACTCAGTTACTTTTTTTTTCTGCTCGTGGTAAAGGGCCAATTTTACTTGAGCCGAGGATCTACCAGAAACAACTTCTCTACCTGCACAAGGTAGGGTAAGGCTACATACATACTACTCTCCCCAGACCCCACTTGTGTAATTACACTGGGTATTATGTTGTTGTTAGGTGGTGAAAGGCCAATTAGTATTGTGTCATTGAGTGGAAGTACAAGGGAAAGAATTAGTAGTAATATAGGAAATTAAACAATGAAAGTGCCTTATTTATGGTTGTGATTCAACTAAAAAAGATTGAGTAGTCAATAAGGGAATCAGAGTTTTGGTTAAAGACCGGCACACTCTTTTCATGACACAGTTAAGTTTGGTCAGAGTAAGCTGTTCAGTTTATTGGAATATAAAGGTCTTGTTTCTTGAAAACTATTGCTGCTAATCCGCTTACTTTTTGTCTCGTGATCAGACAATAAGAGGTAAATTCATCGTTTAACTATTCTCTGTGTGATCTCTACTGCTAAATAATTACACCAGACAACCTTGTAATGAAAAGATGGGAGGACTTAAAAGAAATTGCTTCTCTACCATAAAATATAACTGTTTCCAACCTTGCTTTGCTGAATGTATTTGAAAACTGTGTAACTTATGTCTCCATCTTGATTTACTTGTGACGAGTGATCTTCACCACTGATATTAAGCTATTAATATTACATTCATTTTTTGTTTTTTAAAGCATTGGATGTAGATTTGCTGGCACAATTCTGATTTCCTCTTACATTGACATAGTTCCTTCACCTTGTTGCAGGTGTGGCTACAACTAATGGTGAGACCCCATCTGCAGAGGATTTATCTTCTGCAGAAGTGGTGCATTTGCAGGGTACAGAATGGGTGGATCTTTTTGTTGGAGAGATGATGAGTGCATCAAACATAGATGATGCTAAAGCGCGTGCTTCACGAGCTCTGGAGGCTTTTGAGAAGACCATATGTGCTCGTGCAACAGAGGCAGCCTGCCGTTTCCAGAAGGTGGGCCCCAAGTTCTTTTACGTATTTATTTCCTGCATTATAAACACCCTGACATCTCTTTTTATTTTGTATGCGTTACAAACACCCTGTCATATTTCATTCTTATTTTCTTTTTCATGTCTACACTTACTATGGTCATATAGTGCACAGTTACTTTTGGGGGACCTTAATAAGAGGTAAATGAAGGAATGCAACAAAGAACAAATTGCTTAAATACGAGAAAAAGGAAAATAAGTATTATATAGAACTGGGAAGTGTGCTTTTTTACTTCAATGTCAACGTAAAGAAAATAGTTATTCTGAAAGGGTGAGATTTTATATGTTGAGTGCTTGTGTCTCATTGGGCAATAAGCTAGTAATATTCGGTCATTGTGACCTTCTTGTGTCCCCCTTCCCCCATCCCTTTTTTTTAAAAAAAAAACAATGTTCGTTAACATTGGGTTTCTGCTGGCATAGCCCCATAGGACAGACTGATTATCTTGTTTATTTTGGTTTGTTACTCGTACATCTTATTTTGATGAAGTTTGTTACTCAAAGAGCAAATTGTTATCCATATCCATATGCTTATAGTTTAGTTGTGATACAGGAGAATATGATGCTCAAGCAGCAGTTAGAAGCTCTTGTACAAGAGAATGCTATTTTCAAGCGAGCAGTTGCCATCCAGCATGAGCGTCAAAAGGAATTCGAGAATAGAGGGAACGAGTTGAATCAGCTGAAGCAGTCGGTGGCTCAGTACCAGGAGCAGCTTAGAACCCTTGAGGTCAAATTTCTCTTAGAACTGCTGATATTTTTGTGGTTCATTTATTTTGCTGGAAATTGCATATTGCTTCTCATTCTGTCCATGCTTTCACTATAACCGAATGAAATAAGATGCTTGTCGGGGTTTACGATCACAAGTTTCATCATTTTCTTGTCTTACTATTCTGGACACCGCTTATCATTGGTTGTTTTGGCCTTTCTGTGTCATCAGGTCAATAACTATGCTCTCACGATGCACCTCAAGCAAGCTCAACAAAGCAACAACTCCATTCCAGGGCGTTTCAACCCCGATGTCTTTTAGTATGTGTCATGTCCCTATTGGCTGTGTAACATACATAGGTAGCAACAGTAGTATCCTATCGTCACAGTAGCAGCAAGTGTTTCCTAGAGATGAATGACGATATTAAGCTAGAACTTCTGTCTATTGATCAAAGTGCCCTTCTGCAGTTACTAGACAAAGGGTACTTTGTTCTGTTCATACAAGTTTTTATTTGTTTTTCTGCTGTTGTTTCAATTAGAGTATCCAAAGTTCATACAGTTCTATTCTTCTTCTTCTGCTTTTAAGAAGATGTTCAACACATGATTGTTATGCTTT</genome_strand>
        <mrna_strand>AAGCTGTAATCTCTCTCGTGAAGAGAGAGAATTTAAGAGAAAAATTATTATTTTTTTTCTTTTTATTTACAAAATATTATTCATAGATTCATAGCAAATTTTAGCAATTCGACCATATTTTTTTTTCTTTATTTTTTTGATTTTTTAATTTTTTTTTGAATTTATAAATCTGCATGATCGGAACGGGAAAAGAGGAACTTTTGATCGGAGAAATCTGAAAGAGGAATTTTTTTCCGGCACATCATGTCTGCTATATTGTGCGGGAAGAGATCGAATTTGTTTGAGGATTTTCAGTCGTCGTCGTCTGCGTCAACGCCGGTTTCGAAGAGGATTCGCCGTAATTTTTCTCCGGCGAGGTCTAATTCTGATTCCGATCGTGTTTTGTGTGGTAATTTGATTGCATCGTCGGCACTCGATCATCTTCTCATGATTTTCTCTGACACGGACAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGAGAGAGCACTTGAAGAATCCGGTGATGATCTAGATTCTGCTATCAAACGCCTGAATGAGCTCTGCTTGGGATCTGGTGATAATCTGAGGCCTGTGGCAGGAAGCTCTGGTGCTACACATGAGTTCAGCAGCCAGGTTTTTCCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCTACAACTAATGGTGAGACCCCATCTGCAGAGGATTTATCTTCTGCAGAAGTGGTGCATTTGCAGGGTACAGAATGGGTGGATCTTTTTGTTGGAGAGATGATGAGTGCATCAAACATAGATGATGCTAAAGCGCGTGCTTCACGAGCTCTGGAGGCTTTTGAGAAGACCATATGTGCTCGTGCAACAGAGGCAGCCTGCCGTTTCCAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATGATGCTCAAGCAGCAGTTAGAAGCTCTTGTACAAGAGAATGCTATTTTCAAGCGAGCAGTTGCCATCCAGCATGAGCGTCAAAAGGAATTCGAGAATAGAGGGAACGAGTTGAATCAGCTGAAGCAGTCGGTGGCTCAGTACCAGGAGCAGCTTAGAACCCTTGAG..................................................................................................................................................................................................................GTCAATAACTATGCTCTCACGATGCACCTCAAGCAAGCTCAACAAAGCAACAACTCCATTCCAGGGCGTTTCAACCCCGATGTCTTTTAGTATGTGTCATGTCCCTATTGGCTGTGTAACATACATAGGTAGCAACAGTAGTATCCTATCGTCATAGTAGCAGCAAGTGTTTCCTAGAGATGAATGACGATATTAAGCTAGAACTTCTGTCTATTGATCAAAGTGCCCTTCTGCAGTTACTAGACAAAGGGTACTTTGTTCTGTTCATACAAGTTTTTATTTGTTTTTCTGCTGTTGTTTCAATTAGAGTATCCAAAGTTCATACAGTTCTATTCTTCTTCTTCTGCTTTTAAGAAGATGTTCAACACATGATTGTTATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329790" ref_strand="+" ref_description="SGN-U329790        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21355278-21357204 FORWARD | Aliases: F6N7.6, F6N7_6(evalue: 5e-27, score=117) genbank/nr: gi|15237205|ref|NP_200071.1| hypothetical protein [Arabidopsis thaliana] gi|8953713|dbj|BAA98076.1| gene_id:F6N7.6~unknown protein [Arabidopsis thaliana](evalue: 3e-25, score=117)">
      <seq>gaggttctctgtttatgacttggattccatataaaggacaaagctcgagtgcaaggttgtctgaaaaagaaaagagtctttacactatacgagcagttccattttcggatgttagatcaattcgacgaaacactccgaccctggggtggcaatatgttattgtagttttgtcatcaggactagcatttcctccgctttatttctacaatggcggtgtgcgggagtttcttgcaacaattaagcagcatgcttatcttgtgaggtgaacttaatttgttctcttatgcatcgtcttcgtcattgtcatgactaggcaattcaactaataaatcagattcatctcttcctttttcttttttggcagaattcataagatgagaatagnnaagtaaactagatagtccgctaatgaatgatactgatctcagtaaaaaatcaaaagctatgtcgtataaaagatctnaaaagttgctccttttctttggtgactgagagatagttttcgaaaaatgtaaggacgtggtacatggaaggtttacctctggctgacattcaatggtaatccagctgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="29474" stop="31229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29775" g_stop="29826" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="69" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29827" i_stop="29927" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29928" g_stop="30035" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="177" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30036" i_stop="30529" i_length="494">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30530" g_stop="30929" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="575" r_length="398" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U329790" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29775" e_stop="29826"/>
          <exon e_start="29928" e_stop="30035"/>
          <exon e_start="30530" e_stop="30929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGATTCCATATAAAGGACAAAGCTCGAGTGCAAGGTTGTCTGAAAAAGGTTGGGGTCAATTATCTATTAAATAACAGAGGAAAGAGTAGCTCTGTGCAATAAATTTTCCGCTGTTGTGTAATGGTTGTCCTTTTTATATCTTGGTGCAGATAAGAGTCTTTACACTATACGAGCAGTTCCATTTTCGGATGTTAGATCAATTCGACGACACACTCCGACCCTGGGGTGGCAATATGTTATTGTAGTTTTGTCATCAGGTATTTTACGGGGCTGTATTTCACTAGTGATTCTGTTTTATCTTAGTAAATGAGAAATCCTGTTTTTGTAGAATGTGGAGCACGCAACAAATTCATTTTAGTGGTTGGCATGTATGAAATATCAATTTGAATGAATTTTACTCTTTTCGAAGATCCTCTCTAATCATCATTGTTTCAGAATAGCTTAATTGGCGGTTTCTTGTTTCAGAAAAAGGCTATGATATCATCATGAATTCTGTCTTGTTCCGTGTAGTTTACTACCCAACATCCTCCCCCCCCCCCCCCCCCCCCGAGGAAATCATGATGATGGAAGTAGATTCTTCTTAGAATTTAATATGTATGTCTTCTTGATGGATAGATTCTTGTATGTTACCTACCTTATGATACTTCCCCTTAGAGTTCTAGTGGATTCTTTATTATTTATCATCATATTTTCAGTTTGTTGTATGCCCGTTGTTGCATATTGTGTTTACTTTCTACATCCACACTTGCAGGACTAGCATTTCCTCCGCTTTATTTCTACAATGGCGGTGTGCGGGAGTTTCTTGCAACAATTAAGCAGCATGCTTATCTTGTGAGGTGAACTTAATTTGTTCTCTTATGCATCGTCTTCGTCATTGTCATGACTAGGCAATTCAACTAATAAATCAGATTCATCTCTTCCTTTTTCTTTTTGGGCAGAATTCATAAGATGAGAATAG-AAAGTAAAACTAGATAGTCCGCTAATGAATGATACTGATCTCAGTAAAAAAATCAAAAGCTATGTCGTATAAAAGATCTAAAAAGTTGCTCCTTTCTTTTGGTGACTGAGAGATAGTTTCGGAAAAAATGTAAGGACGTGGTACATGGAAGGTTTACCTCTGGCTGACATTCAATGGTAATCCAGCTGAATTG</genome_strand>
        <mrna_strand>ACTTGGATTCCATATAAAGGACAAAGCTCGAGTGCAAGGTTGTCTGAAAAAG.....................................................................................................AAAAGAGTCTTTACACTATACGAGCAGTTCCATTTTCGGATGTTAGATCAATTCGACGAAACACTCCGACCCTGGGGTGGCAATATGTTATTGTAGTTTTGTCATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGCATTTCCTCCGCTTTATTTCTACAATGGCGGTGTGCGGGAGTTTCTTGCAACAATTAAGCAGCATGCTTATCTTGTGAGGTGAACTTAATTTGTTCTCTTATGCATCGTCTTCGTCATTGTCATGACTAGGCAATTCAACTAATAAATCAGATTCATCTCTTCCTTTTTCTTTTTTGGCAGAATTCATAAGATGAGAATAGNNAAGT-AAACTAGATAGTCCGCTAATGAATGATACTGATCTCAGT-AAAAAATCAAAAGCTATGTCGTATAAAAGATCTNAAAAGTTGCTCCTTTTCTTTGGTGACTGAGAGATAGTTTTCG-AAAAATGTAAGGACGTGGTACATGGAAGGTTTACCTCTGGCTGACATTCAATGGTAATCCAGCTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339405" ref_strand="+" ref_description="SGN-U339405        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21355278-21357204 FORWARD | Aliases: F6N7.6, F6N7_6(evalue: 5e-26, score=115) genbank/nr: gi|50912017|ref|XP_467416.1| GTPase activating protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-34, score=150)">
      <seq>aaagtatatcttatcatactactagaaatttgggatctcaatgttttctcgttccagtatctcttgttgcaatgaactagtagtgggagagataacttgattttaggctgaaggcctttccattcttactggtgagttatatttttccagatcagccgatgatgctaatgtatttcttgtcaacgactttcaagatccactccagagaactctctcctccttggaacttcctagggctgtttctgtaactaacagtccatcatcagctgcacctagcgaatccccatctagctggacagagggggaaacttttgatagaaattctgcacttgctcaacaaaatgccaggcaaagacaaaaacataatgatcctgctcgagatttgtcaattcaagtactagagaaattttctcttgtgaccagatttgctcgtgaaacgacatcacaactttttggtgaagctcagggagatagttttgtctctaatgacaggaggaatcacgatggaaaaacatatgattatcctcgcattgccgaatctaatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="30733" stop="31993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31033" g_stop="31237" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31238" i_stop="31347" i_length="110">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31348" g_stop="31693" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="551" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U339405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31033" e_stop="31237"/>
          <exon e_start="31348" e_stop="31693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATATCTTATCATACTACTAGAAATTTGGGATCTCAATGTTTTCTCGTTCCAGTATCTCTTGTTGCAATGAACTAGTAGTGGGAGAGATAACTTGATTTTAGGCTGAAGGCCTTTCCATTCTTACTGGTGAGTTATATTTTTCCAGATCAGCCGATGATGCTAATGTATTTCTTGTCAACGACTTTCAAGATCCACTCCAGGTGGGACCAGTTTGATCTATCATTTGTTAAACCAGTTAAACAGCTTCTCTGAGGATCTTCATCATTCATGAATCGTCACTTTTGCTCATGCATTAATTTGCTTCTTACAGAGAACTCTCTCCTCCTTGGAACTTCCTAGGGCTGTTTCTGTAACTAACAGTCCATCATCAGCTGCACCTAGCGAATCCCCATCTAGCTGGACAGAGGGGGAAACTTTTGATAGAAATTCTGCACTTGCTCAACAAAATGCCAGGCAAAGACAAAAACATAATGATCCTGCTCGAGATTTGTCAATTCAAGTACTAGAGAAATTTTCTCTTGTGACCAGATTTGCTCGTGAAACGACATCACAACTTTTTGGTGAAGCTCAGGGAGATAGTTTTGTCTCTAATGACAGGAGGAATCACGATGGAAAAACATATGATTATCCTCGCATTGCCGAATCTAATGATGCTC</genome_strand>
        <mrna_strand>AAAGTATATCTTATCATACTACTAGAAATTTGGGATCTCAATGTTTTCTCGTTCCAGTATCTCTTGTTGCAATGAACTAGTAGTGGGAGAGATAACTTGATTTTAGGCTGAAGGCCTTTCCATTCTTACTGGTGAGTTATATTTTTCCAGATCAGCCGATGATGCTAATGTATTTCTTGTCAACGACTTTCAAGATCCACTCCAG..............................................................................................................AGAACTCTCTCCTCCTTGGAACTTCCTAGGGCTGTTTCTGTAACTAACAGTCCATCATCAGCTGCACCTAGCGAATCCCCATCTAGCTGGACAGAGGGGGAAACTTTTGATAGAAATTCTGCACTTGCTCAACAAAATGCCAGGCAAAGACAAAAACATAATGATCCTGCTCGAGATTTGTCAATTCAAGTACTAGAGAAATTTTCTCTTGTGACCAGATTTGCTCGTGAAACGACATCACAACTTTTTGGTGAAGCTCAGGGAGATAGTTTTGTCTCTAATGACAGGAGGAATCACGATGGAAAAACATATGATTATCCTCGCATTGCCGAATCTAATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322086" ref_strand="+" ref_description="SGN-U322086        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G52590.1 | Symbol: None | RabGAP/TBC domain-containing protein, contains similarity to SP:P48365 GTPase-activating protein GYP7 {Saccharomyces cerevisiae}; contains Pfam profile PF00566: TBC domain | chr5:21356854-21360210 FORWARD | Aliases: F6N7.7, F6N7_7 (evalue: 2e-162, score=568) genbank/nr: gi|15237206|ref|NP_200072.1| expressed protein [Arabidopsis thaliana] gi|8953714|dbj|BAA98077.1| contains similarity to GTPase activating protein~gene_id:F6N7.7 [Arabidopsis thaliana] gi|26450726|dbj|BAC42472.1| unknown protein [Arabidopsis thaliana](evalue: 1e-160, score=568)">
      <seq>aactgtcactagtatggggaaaaccacggcaaccccccttgggaacagaagagtggtctgctttcctggacaccgaagggagagtcacagactcagaagcagtaagaaagagaatattttatggtggagtggaaccagatctacgtaaagaggtgtggcaatttctgttgggataccattcatatgattcaacttatgcagagagggaataccttgtgtccgtcaaaaagtcagaatatgaaacgataaaaaaccaatggaagagcatctctaaggagcaggcaaaaagatttacaaaattccgagagaggagaggcctcattgaaaaagatgtggtgaggactgataggtcagtttcattctatgaagaggatgacaacccaaacattaaatgtttgcgtgatatactgctgacatactcattctacaactttgatttgggttactgtcagggtatgagcgatctcctttcaccaatattgtttattatgggagatgaatcagaaacattttggtgctttgtggcgttgatggaacgacttggaccaaactttaaccgtgaccaaaatggaatgcactctcagctttttgcattatcaaagttggtcgagttgttggacatccctctgcataattacttcaaacagaaggactgtttgaattatttcttctgcttccgatgggttcttattcaattcaaaagggagtttgaatttgaacaaacgatgcgattgtgggaggtattatggacgcattatgggagcgagcaccttcatctgtatgtgtgtgtcgcgattctgaaaagacatcgcagcaaaataataggagaggggatggatttcgacacactactgaaatttatcaacgagctgagtggtcatattgacctagatgctatcctcagggatgcagaggctctgtgtatatgtgccggcgaaaatggtgaatcctgcatccctcctggaactccaccttcattaccagttgacgatgcttcaatgtattaccaacaagatgatgatgatcatatgttataatataagtaggaagatcaccattttgtccctctactacaagtaaaatctgattaaatataaatattttaattacataatgatagactttgaagttcttttaataattaaattatcattttcttgataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="32581" stop="50241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32881" g_stop="32933" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32934" i_stop="34403" i_length="1470">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34404" g_stop="34502" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="152" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34503" i_stop="34579" i_length="77">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34580" g_stop="34690" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34691" i_stop="35025" i_length="335">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35026" g_stop="35097" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="335" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35098" i_stop="35228" i_length="131">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35229" g_stop="35345" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="452" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35346" i_stop="35722" i_length="377">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35723" g_stop="35872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="602" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35873" i_stop="36780" i_length="908">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36781" g_stop="36881" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="703" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36882" i_stop="37415" i_length="534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37416" g_stop="37872" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="1160" r_length="457" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37873" i_stop="39261" i_length="1389">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39262" g_stop="39286" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1185" r_length="25" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U322086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32881" e_stop="32933"/>
          <exon e_start="34404" e_stop="34502"/>
          <exon e_start="34580" e_stop="34690"/>
          <exon e_start="35026" e_stop="35097"/>
          <exon e_start="35229" e_stop="35345"/>
          <exon e_start="35723" e_stop="35872"/>
          <exon e_start="36781" e_stop="36881"/>
          <exon e_start="37416" e_stop="37872"/>
          <exon e_start="39262" e_stop="39286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTCACTAGTATGGGGAAAACCACGGCAACCCCCCTTGGGAACAGAAGAGGTAGAGGACTATCTTTTTATCTATTTTTCAGCTTGCACTTATTAAATGCTAAGACAATGGCTGCTAGGCCCAAGAATTTTTTTTGACTTTCATCTCATGTCTATCTCATTTTGTTCTAATTGCCAATGGCCATGATCACTTGCCTTGAAGCAACTAAAATCATTGAGTTTTAAGCAGACTGACACTTAACTGCGTCATAGATTCTCAATTTTTTTATCGGAGTATCCAAATGTCCAGATTCGTGACAGGTCCCAGGGTGATCAATTTTTCCACTTGTATATCTCTGTTTTGTAACCATTGTTTTAGAAGGGATTCCTATTTGATCTAGAAGTAGCATTAGTAAACTAACTCATTTCTGTATTTTTTCTATTTTATCATGTAGAAACTTCTTTGCTTAAGTAAAGAAATTCTCTCTGTGAAGTTCAAGTCAATTATATCGTTTGGAATCCCATGAATTCTTCATTGAAGGCGTGATATAGATAAACTGATTATTGGGGCTTCTTCCAGGGAATGTGTTTCAGAAATAGAATTTACAGCTCTAAACATCAGATCAATTTATGAGTAGCTGATCAGTGTTTGGCCACTGTGTCACTAATTATAAAGAGGGGGGGGGGGGGATGTTGTGTCTCTAAGCTAATCATATAGTGACTCACTTTAGAATTCACTTTTATGACATTTATGGCATTGGTTTAAACTAAGCTATATTAGAAGTTAGAACATTGAACTAGTTTTGAGATAGACGATCTCTTGCAAGATTGCATCTATATAAAATTTTGCGGAGGTTATGTTGTCCATGTTCAAAGCTAGTCTTTCAAACACTTTTAATTAGTGATATTTGTTGCAATTCAGAATGTTCTCAAATATTTTGGGAGAACCTATGTGTTTTTAGATGTATGGTCCATTGAAATGCAAAATGCAAAAAATATATTGGTTCTTGTGATTTTCTTTTGAGATCGTTATGTTTTTGCTTCTTTTAACTTTCAATAATTTTATGTGTTTATGCACGTGTGTATACTATTTGTACAACAAATCTTATCAAGAAAGACGGTTCACCTAATTGTTAATGTTGCATCATAAGTTAGAAGAAAATTTATGATGTCTAATAAGTCGTCATTCAGTGAGTGTACTTATTGTCCGAGATCAATTGTATATCAAATTAGGAAGTCAAGTTTATATGATCTAGGCACATATTTGTGTTCAATGGGGCAGATATATGTCCTAATACAATTTTAAATTCTATCTTGATGTGTATTATTTTCTTAGCATGATTGTTCTAAGTTCTAACAATGGTTAATCCAGAGGCAAGGTTTATCTCGTCATTGTCAATTACTGCACATCTGGTTTATCTTCAACGACATCTATATTTTCAATTTTTTGCATTGATTTTAACAAATTGTATGTTTTCTGATGTTATCCTATTGTTGTGATTACATTCACGACTAAGTTCCAAATGTTTTGTTCCTTATGCAGTGGTCTGCTTTCCTGGACACCGAAGGGAGAGTCACAGACTCAGAAGCAGTAAGAAAGAGAATATTTTATGGTGGAGTGGAACCAGATCTACGTAAAGAGGTTTGTTCTTGTAAATATCTACACTGCTCCTCATCTGTTTCTCTGAGCATGAATGTACTTATGTGTCCTTATGGCAGGTGTGGCAATTTCTGTTGGGATACCATTCATATGATTCAACTTATGCAGAGAGGGAATACCTTGTGTCCGTCAAAAAGTCAGAATATGAAACGATAAAAAACCAATGGAAGGTTTGTCATATTCTCAGCTTGGACAGGGTTGGTTGAAAAGTAAAATGTTTCTGATTCTTCATTTACTCAATCTTTCTAGGTGTTTTCCTTCAATTAGCAAAATGTTTTCACTTGTAACAGCGATAATTTAATTCTAGATCTGTTAAGGTGCTATAAGATCCTTTTCTTTCCTACTTCTATTTTGATGCTCTTGTAATTTTAATGTTTCATTTGGGAAGTCTATCCCTATGTTTTCCTTTTGTCTAGAAGGCTCCCATGACAAGAAGATTGTCTTTGAGATAATTGTGTTAAAAGTGTTAATTTAATTCTAATGTTTATCGATGTCTCTGTAACAGAGCATCTCTAAGGAGCAGGCAAAAAGATTTACAAAATTCCGAGAGAGGAGAGGCCTCATTGAAAAAGATGTGGTATGTGTCAAATTTGTCCATTTCGCGGGCCTATAAGTTATTTTGTTTGAGAACCAAGATGCACGTTTACATCCTTGCAATTCACAACCAGTGATACTATTATTTGGTTATTAATATGTTTGATATGTAAGGTGAGGACTGATAGGTCAGTTTCATTCTATGAAGAGGATGACAACCCAAACATTAAATGTTTGCGTGATATACTGCTGACATACTCATTCTACAACTTTGATTTGGGTTACTGTCAGGTAAGTTCTTCCTTTAAGCTTAACATGTGTGCTTCTTCGCTGATCAATATGTTCATGCTGTATTACAAACAATTTGATCATATGTGACATCTCTGTTTTATTGATCATTGGAAGACACTGTCGTTCAGATCCGATGTAATTTATGTTACATGTCCTATCTGATATTACCAAGCCTATCTTATTCATTATCATTTGATTTTTCATCTTTCCAAAAAAACAGTTCATTGGTGTGATATGATCATGGTACCACTCTCTATCTTATTATGGAAGCCCTTTTTGCTCAAATATTCTCTGTGCAACTTAACACCTTTCCTTTATTTTCGTGGTTTCTCACTGATTGGTAAATGAAAATTTGTTTCTGTCGAATTAAATTGCAGGGTATGAGCGATCTCCTTTCACCAATATTGTTTATTATGGGAGATGAATCAGAAACATTTTGGTGCTTTGTGGCGTTGATGGAACGACTTGGACCAAACTTTAACCGTGACCAAAATGGAATGCACTCTCAGCTTTTTGCATTATCAAAGGTTCTCTCTCTCCTCCCTTCTCTTTCCTCCTCTCCGCTCTCTTGTTGCTAGTCTGTTAAGGTTCTAGCATTAGCATTTACCTCCCAGTGAACCCCAGACAGATTGTACGCAACAGTTAACCAGAGATCTATTCCAAGGGGACAGAAGAGAGTGACCTGTATTATTCCGACTTTGTTCCTTGTCTCTGGAATAATTGTTTTGAAGAGTAAACCCAAATAGGAGTTGTTGGCATGTGTTTATGTCCCAAGCACCTCTAAGAAAGCCATAGAGTAAAATGAAGTGCTGATAATTCCTAGTTTATTTTGACCGTCTCTTTGGTGTTACTCCTCCACTTTGAGTATGCTCTGTTCTTAGTTGTAAAATAGCACTTGCCTTTCAAAATTGAGTTCTATTGAAATAAACTATCGAGTTTTGGTTGTCAAATGGAGGATTAGTTTGATTGCTTTTTACATGCTCTAAGAAGGCCTAACTATTGCTGATACACATCCATTGTATTTATGATAAATATGTCTGCCTGTTTATCTGGATCTTGTAGCAAATGATTGATCAGCGAGTGCATAGTCCCATGCCATCACCAGTTCTTTCTTGTTTCCATTCCTTCCAATTCTTTCCAGTTATATTATATACTTCTCCATCCCAATTTATGAGGCACCGTTTGACTTGACCCGAAGTTAAGAAACAAAGAAAGATGTTTGAGACTTGTGGTCTAAAACAAACCTAAGATTTTTGTGTGGCTATAAAATCATCTCAATGAGAACTGCAGACATTCTTAATGGGGACAAATTAAAAATGGAATTGTGCCACATAAATGGAGATAAAGGGAGCACTTGTGTAGTATATTTTTACATTTTGGGCTGATAAATGTTTGCTTTCTTACAAAAAATGGTGTTCTTACTATGTTTTTGCAGTTGGTCGAGTTGTTGGACATCCCTCTGCATAATTACTTCAAACAGAAGGACTGTTTGAATTATTTCTTCTGCTTCCGATGGGTTCTTATTCAATTCAAAAGGCAAGTAGTAGTAATCCTTAAAAAAATTATATTTTATTGGCCATCCTCTATATGATTTACTTTGGTATATACGAGTATGCTCTGGTTTCTTCTTTAACACAAACTCATACCATTGATTATCTGTTAAATTATGCTGATGTGAGTAATTAGATTCAAAGGCCCATTTCAGATTTCCATAGACTTGCTATTAGTTCTGGTTTTGTGCATATATTTCTCATAACTATTTTCTATGACCTTGTGACATTTTAAGATTTCAAAAGGTTAGTTACAGACACTGTTTTCATCATTTTTTTATATTCCTTTTGCTTGGATCTGTACCTACCATTTTAAAAAGAATCTTATAATTTTGTAGTGTTCCATTTGATAAAGTGGAAATCAGAAAAGAACTTTAGCTTCTCTTTCAAGTTGTTTGTCCCATTTCTTCCTTCCTCTTTCTTTCAATGTGCAACGCCACTTACTGTTGTTCCCTTTGTCTTACTATGTTTATCAGGTATTTGTTTAGTAGTTTATTTATCGATACCTTGTCTGTTGTAGGGAGTTTGAATTTGAACAAACGATGCGATTGTGGGAGGTATTATGGACGCATTATGGGAGCGAGCACCTTCATCTGTATGTGTGTGTCGCGATTCTGAAAAGACATCGCAGCAAAATAATAGGAGAGGGGATGGATTTCGACACACTACTGAAATTTATCAACGAGCTGAGTGGTCATATTGACCTAGATGCTATCCTCAGGGATGCAGAGGCTCTGTGTATATGTGCCGGCGAAAATGGTGAATCCTGCATCCCTCCTGGAACTCCACCTTCATTACCAGTTGACGATGCTTCAATGTATTACCAACAAGATGATGATGATCATATGTTATAATATAAGTAGGAAGATCACCATTTTGTCCCTCTACTACAAGTAAAATCTGATTAAATATAAATATTTTAATTACATAATGATAGACTTTGAAGTTCTTTTAATAATTAAATTATCATTTTCTTGATAAATGAGTACATTCATATTGCTTTTAATCGTAACCATAGATTTTATCATGAAATTTTTTAAAAATTATGATATGGAAAGTCATTCATTACTTTAACGTAGAGGTCAATTTTAGAATTAGAAGGGTCATTTATTAATACTCTCTTCGTTTAAAAAAAGGTGATCTAGTTTGACTTGGAACGGAGTTTAAGAAAATGAAGAAGACTTTTTAATCTTGTAGTTCTAAATTAAAGTTATATCAAATGTATCAAAACGCCTTTTAATTTTGTGGTCTTAAGCATGTCACATGAAAAATTAAAGTTAAAGTATTGCTCAAAAAGAAAAGGGGATATTTTTTTTGAAACAAACTAAAAAGAAAAATAGAGACATTGTTTTTTAAACGGAGGAAATACTATTTAAGAATCAACTTACAAAATGAAAGCTCACAATATGTAATTGAATAATGAAAATTGCACAATTCAACATGAAAAGATAATAGAGTTTTTAGGAGATAAATGAGGAAACACAATTTTTCACTTAACGAAATTATTTTCAAAAAATGTTTCATTCCCTTAGATAAGTGGGGATAACTAATGGTTATTTTGTTTTTTTAAACTCCTTCTGTCCCTATTTACTTGTTCATATTTCTTTTTATATTTGTCCCTATTACTTGTCCATTTTAATAAATCAAGAAAAGACAATAAATTTTTTCCTAATATGCCCTCATTTAATTCTAGAAAATTTCTAGTACTACTAAGTTGTAATGTATGCTTTTTGGAACCAGAAAATACATTTATTATATTTGGAAAGTTACATAATCTTTTTAAGTTAATGGTAAAATTGTATCTAACATATGATAATAATTGGTGCCTTAATATGTGTGTCACTTCTAAAGTGGACAACTAAATAGGAACAGAGAGAGTACTTCTTACGTGTTATTTTTTTTTAAAAAAATACATATAATTTTAAGTTATAGGTATAAGTATTCTTTAAAAAATTGGGTTCCCAAAAAAAAAATATGTGGTCCTAAGCGATGACTTTAGTGGCCTAGTGGTTAAGACGGCCCTGTATATCTTACAATTCCCATGTTGGATACATTTCTATTGAGCCGAAGCTCTATTATAAACGACCTCTTTGCCCCTTAGGATCCTTAGGGGTAAGATTTGCGTACATCCTATTCTTTTTAGACTCCATTTATATAATTATACTGAATATGTTATTATTATTACACGGTCTAACCCAATGCATCACCTACTATACTTCAAGTTTTTATCTTTGCTGAAATGACCAAAATACCCTCAACATTTTAGTGACATGAGAATGGTTATGATATGAGGGAAATCTTGTAATCTTATCCTCTATAGTCCAACTTGTCACAATGCCACCATATTAACAAGAAAAAATAAACAGATAAAAAATAAAAAGAAAAAAAAAT</genome_strand>
        <mrna_strand>AACTGTCACTAGTATGGGGAAAACCACGGCAACCCCCCTTGGGAACAGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCTGCTTTCCTGGACACCGAAGGGAGAGTCACAGACTCAGAAGCAGTAAGAAAGAGAATATTTTATGGTGGAGTGGAACCAGATCTACGTAAAGAG.............................................................................GTGTGGCAATTTCTGTTGGGATACCATTCATATGATTCAACTTATGCAGAGAGGGAATACCTTGTGTCCGTCAAAAAGTCAGAATATGAAACGATAAAAAACCAATGGAAG...............................................................................................................................................................................................................................................................................................................................................AGCATCTCTAAGGAGCAGGCAAAAAGATTTACAAAATTCCGAGAGAGGAGAGGCCTCATTGAAAAAGATGTG...................................................................................................................................GTGAGGACTGATAGGTCAGTTTCATTCTATGAAGAGGATGACAACCCAAACATTAAATGTTTGCGTGATATACTGCTGACATACTCATTCTACAACTTTGATTTGGGTTACTGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................GGTATGAGCGATCTCCTTTCACCAATATTGTTTATTATGGGAGATGAATCAGAAACATTTTGGTGCTTTGTGGCGTTGATGGAACGACTTGGACCAAACTTTAACCGTGACCAAAATGGAATGCACTCTCAGCTTTTTGCATTATCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCGAGTTGTTGGACATCCCTCTGCATAATTACTTCAAACAGAAGGACTGTTTGAATTATTTCTTCTGCTTCCGATGGGTTCTTATTCAATTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTTGAATTTGAACAAACGATGCGATTGTGGGAGGTATTATGGACGCATTATGGGAGCGAGCACCTTCATCTGTATGTGTGTGTCGCGATTCTGAAAAGACATCGCAGCAAAATAATAGGAGAGGGGATGGATTTCGACACACTACTGAAATTTATCAACGAGCTGAGTGGTCATATTGACCTAGATGCTATCCTCAGGGATGCAGAGGCTCTGTGTATATGTGCCGGCGAAAATGGTGAATCCTGCATCCCTCCTGGAACTCCACCTTCATTACCAGTTGACGATGCTTCAATGTATTACCAACAAGATGATGATGATCATATGTTATAATATAAGTAGGAAGATCACCATTTTGTCCCTCTACTACAAGTAAAATCTGATTAAATATAAATATTTTAATTACATAATGATAGACTTTGAAGTTCTTTTAATAATTAAATTATCATTTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337524" ref_strand="+" ref_description="SGN-U337524        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G52590.1 | Symbol: None | RabGAP/TBC domain-containing protein, contains similarity to SP:P48365 GTPase-activating protein GYP7 {Saccharomyces cerevisiae}; contains Pfam profile PF00566: TBC domain | chr5:21356854-21360210 FORWARD | Aliases: F6N7.7, F6N7_7 (evalue: 4e-45, score=176) genbank/nr: gi|55773891|dbj|BAD72476.1| GTPase activating protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 2e-42, score=176)">
      <seq>atctacctaaagaggtgtggttatttctgttgggataccattcatatgatttaatttatgcagatagggaacaccttgagttcgtcataaagacagattattaaacgatagaaaaccaatggaagatcatctctaaggagcatgcaaaaagatttatagaattccgagagaggagaggcctcattgaaaaagatgtggtgaggactgataagttagattcattctatgaagaggatgacaacccaaacattaattgtttgcgtgatatactgctgacatactcattctacaactttgatttgggttactgtcagggtatgagcgatcttctttcaccaatatttgtttattatgggagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="34266" stop="36069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34489" g_stop="34502" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34503" i_stop="34579" i_length="77">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34580" g_stop="34690" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="0.883"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34691" i_stop="35025" i_length="335">
            <donor d_prob="0.611" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35026" g_stop="35097" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="197" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35098" i_stop="35228" i_length="131">
            <donor d_prob="0.843" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35229" g_stop="35345" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="314" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35346" i_stop="35722" i_length="377">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35723" g_stop="35769" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="362" r_length="48" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U337524" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34489" e_stop="34502"/>
          <exon e_start="34580" e_stop="34690"/>
          <exon e_start="35026" e_stop="35097"/>
          <exon e_start="35229" e_stop="35345"/>
          <exon e_start="35723" e_stop="35769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACGTAAAGAGGTTTGTTCTTGTAAATATCTACACTGCTCCTCATCTGTTTCTCTGAGCATGAATGTACTTATGTGTCCTTATGGCAGGTGTGGCAATTTCTGTTGGGATACCATTCATATGATTCAACTTATGCAGAGAGGGAATACCTTGTGTCCGTCAAAAAGTCAGAATATGAAACGATAAAAAACCAATGGAAGGTTTGTCATATTCTCAGCTTGGACAGGGTTGGTTGAAAAGTAAAATGTTTCTGATTCTTCATTTACTCAATCTTTCTAGGTGTTTTCCTTCAATTAGCAAAATGTTTTCACTTGTAACAGCGATAATTTAATTCTAGATCTGTTAAGGTGCTATAAGATCCTTTTCTTTCCTACTTCTATTTTGATGCTCTTGTAATTTTAATGTTTCATTTGGGAAGTCTATCCCTATGTTTTCCTTTTGTCTAGAAGGCTCCCATGACAAGAAGATTGTCTTTGAGATAATTGTGTTAAAAGTGTTAATTTAATTCTAATGTTTATCGATGTCTCTGTAACAGAGCATCTCTAAGGAGCAGGCAAAAAGATTTACAAAATTCCGAGAGAGGAGAGGCCTCATTGAAAAAGATGTGGTATGTGTCAAATTTGTCCATTTCGCGGGCCTATAAGTTATTTTGTTTGAGAACCAAGATGCACGTTTACATCCTTGCAATTCACAACCAGTGATACTATTATTTGGTTATTAATATGTTTGATATGTAAGGTGAGGACTGATAGGTCAGTTTCATTCTATGAAGAGGATGACAACCCAAACATTAAATGTTTGCGTGATATACTGCTGACATACTCATTCTACAACTTTGATTTGGGTTACTGTCAGGTAAGTTCTTCCTTTAAGCTTAACATGTGTGCTTCTTCGCTGATCAATATGTTCATGCTGTATTACAAACAATTTGATCATATGTGACATCTCTGTTTTATTGATCATTGGAAGACACTGTCGTTCAGATCCGATGTAATTTATGTTACATGTCCTATCTGATATTACCAAGCCTATCTTATTCATTATCATTTGATTTTTCATCTTTCCAAAAAAACAGTTCATTGGTGTGATATGATCATGGTACCACTCTCTATCTTATTATGGAAGCCCTTTTTGCTCAAATATTCTCTGTGCAACTTAACACCTTTCCTTTATTTTCGTGGTTTCTCACTGATTGGTAAATGAAAATTTGTTTCTGTCGAATTAAATTGCAGGGTATGAGCGATCTCCTTTCACCAATA-TTGTTTATTATGGGAGATGA</genome_strand>
        <mrna_strand>ATCTACCTAAAGAG.............................................................................GTGTGGTTATTTCTGTTGGGATACCATTCATATGATTTAATTTATGCAGATAGGGAACACCTTGAGTTCGTCATAAAGACAGATTATTAAACGATAGAAAACCAATGGAAG...............................................................................................................................................................................................................................................................................................................................................ATCATCTCTAAGGAGCATGCAAAAAGATTTATAGAATTCCGAGAGAGGAGAGGCCTCATTGAAAAAGATGTG...................................................................................................................................GTGAGGACTGATAAGTTAGATTCATTCTATGAAGAGGATGACAACCCAAACATTAATTGTTTGCGTGATATACTGCTGACATACTCATTCTACAACTTTGATTTGGGTTACTGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................GGTATGAGCGATCTTCTTTCACCAATATTTGTTTATTATGGGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320503" ref_strand="+" ref_description="SGN-U320503        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | chloroplast thylakoid lumen protein, SP:022773 ;TL16_ARATH | chr4:1112146-1114026 REVERSE | Aliases: T10P11.17, T10P11_17(evalue: 3e-50, score=195) genbank/nr: gi|21595571|gb|AAM66113.1| thylakoid lumenal 16.5 kDa protein, chloroplast precursor [Arabidopsis thaliana](evalue: 2e-48, score=195)">
      <seq>gatcccccgggctgcaggcaactgtgtgtctctcaaatcctaaatcttttcttccatcatcttcattttccactagaaaacaaataattttgtgcaaagcagagaataatgtatgtaattttagttcaattattagcaagagaagtctatcaattagccttgcatcaagtttgttgctttctttaactggaaatggaacttttaatgcaaatgctgcaattttagaagctgatgaggatgatgagttgatggaaaaagttaaaaaggatagaaaaaaaaggcttgaaagacaaggcattgtcaattcctcctcaaaggaaaaaggatacttgcaagatttggtatacaagctcagtaaagtaggccaagctatagagaaaaatgatttatctgcagcaagttcagttcttggccaaaacactgatgcagattggttgcagaaagttaattcagcactcaacaagtttagtggtagcgatgaggagaagtcagagatcgattccttcaattcttcgctatcttctcttgtttcatcagttactaagaatgacattgaaggatcaaaaacagcttttgtggcatcagctagtgcatttgagaaatggacaacattaacagggttgattgaagagctaaaagggctttgaagcgaaaaaagaaattagtatattatatgagaatttggtctatatcaacatgtttttaccttttaactttcttttactgtttgtgtaaccacaaagtaataattcttttacattgtctttttttcctatgtcaaatgaatcatttgagttatacaatgtaatttgaacaacagttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="38987" stop="41746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39287" g_stop="39594" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="324" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39595" i_stop="40332" i_length="738">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40333" g_stop="40472" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="464" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40473" i_stop="40553" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40554" g_stop="40626" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="537" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40627" i_stop="41156" i_length="530">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41157" g_stop="41453" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="834" r_length="297" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U320503" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39287" e_stop="39594"/>
          <exon e_start="40333" e_stop="40472"/>
          <exon e_start="40554" e_stop="40626"/>
          <exon e_start="41157" e_stop="41453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTGTGTGTCTCTCAAATCCTAAATCTTTTCTTCCATCATCTTCATTTTCCACTAGAAAACAAATAATTTTGTGCAAAGCAGAGAATAATGTATGTAATTTTAGTTCAATTATTAGCAAGAGAAGTCTATCAATTAGCCTTGCATCAAGTTTGTTGCTTTCTTTAACTGGAAATGGAACTTTTAATGCAAATGCTGCAATTTTAGAAGCTGATGAGGATGATGAGTTGATGGAAAAAGTTAAAAAGGATAGAAAAAAAAGGCTTGAAAGACAAGGCATTGTCAATTCCTCCTCAAAGGAAAAAGGTAAAAATAAAATAAAATTATTTTATTGTTTTTTAAATAAATTTCTCTAGTTGTGAAATCAAGAAAAGATCAACTATATGTATGGTAAATACCTTCCAGGCTCGAATCGAGACCCTCTGGTTAAGGATGAAGGCGTACTTATCGCTTCACTACAAACCTAATAAGTTATGAGTTGCCTTTGTTTCATCTTATGAATCATTATGTTGTAATTTCAGTGAAGTACCTCTTACCACACAATTTAGTGAATTAAGAACAGTATTTGGTACTGTCAAAGTGTCGGAGGCATGATTTTCAATAAAGGATTCATCATTTACTATTATATATAATAAAAAAAAGAGATGAACCCCTTCTTTCCTAACTGTTATCTCCGGGGAAGACTCACACCCTGAGGAATGTGTTGTAGACAGTCTATCCTAATACAATCATTAGTAACTGCTTCCACAGTTCAAACTCGTAACCTGACACAATCACACGAATGTGTATGGCAAAATAATTAGCACATTATTCTTGTATTAGCTATCATGATACTAAATATTGACAAACCACCCTTATTGGTCAGTTCCGCTTTTTGATTAGATTTAACTTATATACACTAAATAGCATAAAAACAATTTACACCATCACCACAATTTCTCCTGTTGTTGCAAGTTACTTGTCTACTAATTCCACTTATTATGAAAATTTAGTTACATGATATCATGTTTAATAACTTTCATATTGTTAAATTCAATGGTGAAGGATACTTGCAAGATTTGGTATACAAGCTCAGTAAAGTAGGCCAAGCTATAGAGAAAAATGATTTATCTGCAGCAAGTTCAGTTCTTGGCCAAAACACTGATGCAGATTGGTTGCAGAAAGTTAATTCAGCACTCAACAAGGTAGTTTTTTTTTTAATCCTTTCAAGCACATTTTTTCTTTCACATTGGTCTATGTCTACTGAATATTTCGCGTTGTTACAGTTTAGTGGTAGCGATGAGGAGAAGTCAGAGATCGATTCCTTCAATTCTTCGCTATCTTCTCTTGTTTCATCAGGTAATGTTTTCCTTGACACTCAAAAGATGACTATGGTTGCCAACTTGTCTCATGTTTAGCCTCCCTAGATCACAAACTAGGACTTTCTAAAGATAAAAGTAAACAAGAATTTCGAGCTAGGTTCAAGATAATGCCCAAAGGTATGCGATTTGATGTAAAAAGAAACTCAACTTTCATCTATGTTGCTTGGACTCTACAAAGATGTTGCTACACCTGCATCGGATCCTCCAAAAATGCATCACTTTAGAGGATCCGACATGCACCTGTCCACATTTTTGCAGAGTTCAACTAACATAGCCTTTCAAAGAAAAGCACAGATACCAAATTCCATAGGTTTGATAGAGAGGTGGCTGCTAAAGTTGCAGCCATTTGACCAGGTTCGAGATATGGTAACAGCCTCTTGCAAAAATAGAGAGTAAGATTGTGTACAATAGACCCTTGTCAAAGCACATAGTGGGCGAGTCTTCACTTAACTCGGCTTGTCAAAAGCAAAATTAACTAATCGTCTCTGTTTAATGTGTGTTATGCAGTTACTAAGAATGACATTGAAGGATCAAAAACAGCTTTTGTGGCATCAGCTAGTGCATTTGAGAAATGGACAACATTAACAGGGTTGATTGAAGAGCTAAAAGGGCTTTGAAGCGAAAAAAGAAATTAGTATATTATATGAGAATTTGGTCTATATCAACATGTTTTTACCTTTTAACTTTCTTTTACTGTTTGTGTAACCACAAAGTAATAATTCTTTTACATTGTCTTTTTTTCCTATGTCAAATGAATCATTTGAGTTATACAATGTAATTTGAACAACAGTTATGAAGCTAAAT</genome_strand>
        <mrna_strand>GGCAACTGTGTGTCTCTCAAATCCTAAATCTTTTCTTCCATCATCTTCATTTTCCACTAGAAAACAAATAATTTTGTGCAAAGCAGAGAATAATGTATGTAATTTTAGTTCAATTATTAGCAAGAGAAGTCTATCAATTAGCCTTGCATCAAGTTTGTTGCTTTCTTTAACTGGAAATGGAACTTTTAATGCAAATGCTGCAATTTTAGAAGCTGATGAGGATGATGAGTTGATGGAAAAAGTTAAAAAGGATAGAAAAAAAAGGCTTGAAAGACAAGGCATTGTCAATTCCTCCTCAAAGGAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTTGCAAGATTTGGTATACAAGCTCAGTAAAGTAGGCCAAGCTATAGAGAAAAATGATTTATCTGCAGCAAGTTCAGTTCTTGGCCAAAACACTGATGCAGATTGGTTGCAGAAAGTTAATTCAGCACTCAACAAG.................................................................................TTTAGTGGTAGCGATGAGGAGAAGTCAGAGATCGATTCCTTCAATTCTTCGCTATCTTCTCTTGTTTCATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTAAGAATGACATTGAAGGATCAAAAACAGCTTTTGTGGCATCAGCTAGTGCATTTGAGAAATGGACAACATTAACAGGGTTGATTGAAGAGCTAAAAGGGCTTTGAAGCGAAAAAAGAAATTAGTATATTATATGAGAATTTGGTCTATATCAACATGTTTTTACCTTTTAACTTTCTTTTACTGTTTGTGTAACCACAAAGTAATAATTCTTTTACATTGTCTTTTTTTCCTATGTCAAATGAATCATTTGAGTTATACAATGTAATTTGAACAACAGTTAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321624" ref_strand="+" ref_description="SGN-U321624        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | methyl-CpG-binding domain-containing protein, contains Pfam profile PF01429: Methyl-CpG binding domain | chr1:5275672-5277657 REVERSE | Aliases: F9L1.28, F9L1_28(evalue: 2e-35, score=147) genbank/nr: gi|56382007|gb|AAV85722.1| At1g15340 [Arabidopsis thaliana] >gi|20453139|gb|AAM19811.1| At1g15340/F9L1_28 [Arabidopsis thaliana] >gi|18394229|ref|NP_563971.1| methyl-CpG-binding domain-containing protein [Arabidopsis thaliana] >gi|5103831|gb|AAD39661.1| ESTs gb|H37032, gb|R6425, gb|Z34651, gb|N37268, gb|AA713172 and gb|Z34241 come from this gene. [Arabidopsis thaliana] (evalue: 1e-33, score=147)">
      <seq>ttttctattttttttttttttttgggaaattttggttaggtgggaaatggcgaaatcagtggagaaaaatgaagttgtgtctattgagcttccagctccttctggttggagcaagaagtttctgcctaaaaaaggaggtactcccaagaagaatgatatcgtatttactgcaccaacaggagaggagatcaccacaagaaaacagttggaacagtacctgaagtcacaccctggtggtccaccagtagcggagtttgattggggaactggtgaaaccccaagaagatcggcgaggatcactggaaaggcaaaggcaactcaatctcctacagaaagtgaacctgctaagaaacgaggcagaaagtcttcagcttcgaagaaggattccaaagacaaagaagtcactaaagaaactgaagcagcaaaggatgatgacatggaggaagctgaaaagcacgagaaggacactgcagcaatggaatctgaggaagatgttgaaaaaaaagaaaatgagaacccaaatgaaactcaagatggagaaagcgaagtggagaagaaagatgaaatccaatcttctgagaaggatgttgtgaaggagaacttagatgaaggccaaaatgttcatgacaaagtagaagatgctcaagttgagaaagacgttcagatggctgataatgttggaccttctcaagatgttgaagaggctcctgttgttaaagcagctgatggtcctgacgctactaaaattaacgaggaggaaaaggatgtacaggttcaagaagtagaaaaggtacctactgaagaagctcacatcgagaaagatgttaagatggctgataatgatgttgaagaggagacccctgctgataaaacagctgttggtcctgaagctactaatattaacgaggagggaaaggatgtacaggttcaagaagtggaaatattacctaccgaggaagctcaggttgagaaagatgtcaaaatgactgataacattggacatccagacgttgttgaagaaacccctgctgatgttcctgaagctactaaactaaatgaggaggaaaaggatgtacagattcaagaatcagaaaacaaacctaatgaagaagctcaggttgaaaaagatgtcaacaatgttgaagaggctcttgctgaaaaagcagcggaggaaaaggatgtacaggttcaagaagcagaaaaagtagatcctagcgctgctgaggagttgaagcatcaagcagaaggaaagagtactgatgatcaagataatttgatgaacattgaaataagtaaggtggagggagaagtaactgagaatggcagcaatgccaacgaggccaagccttgagcagtggttctctctaactctaacattttgctctttttgcttcatttggatgactgtagtgttgtcaattatagatactctgattgttcatgagagacatctgtatgcaaaaccatagatttaggtcctaaatattgctctgtaaggattttatcgcctgtaccagtactactgtatgccatagatttagactttcagcagagacactagtgctgaggtaatttgtagttgtccagatctgcaaaactattgttagtactcagtatgtaagcttataaaaagcctgtgttttcttgactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="50052" stop="41409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49752" g_stop="49636" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49635" i_stop="43243" i_length="6393">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43242" g_stop="41710" g_length="1533"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="1651" r_length="1533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1652" polyA_stop="1666"/>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U321624" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1650</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49752" e_stop="49636"/>
          <exon e_start="43242" e_stop="41710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTA-TTTTTTTTTTTTTTTGGGAAATTTTGGTTAGGTGGGAAATGGCGAAATCAGTGGAGAAAAATGAAGTTGTGTCTATTGAGCTTCCAGCTCCTTCTGGTTGGAGCAAGAAGGTATCTTTTTTTATCCTCAGACTTTAAGTTTATGTTCAGTTCTTGAAGTTTTTTTTAAGTAAAGTTGCAATTTTTATGTTGAGTTTATGTAAAGTTTGTTTCTTTAGCTTTGTTGTTTGCAAATTTTCAGCAATGGGTTTTGTGGGTGTTGTTTAAATTTGCTTAATTTGATGTTATCAAGGTAGAATTTTTGGTTTTGGTGAGTGAGGGTGAAGATAGGGTTTTAGCTTGTTTAGTTCTGATGAAAAGTTATAATTTTTTTTGTTGAGTTTATGTAAAGTTTGGTTCTTTAGCTTTGCTGTTTGCAGTTTTTCTACAATGGGGTTTGTTGGTGTTGTTTAATTTTGCTTATTTTTGTGGTTCTCAGGTTGAATTTTTGGTTTGGTTAGTAAGGGTCGTTTAGGAGATAGGGTTATTCTCAGTATTTTTCATGTTCAGTTCTCCAGAAAAATTACAATTTTGTGAAAGTATGTTTCTTTAGCTTTGTTATTTGTAGTTTTTCTACAGTGGCGTTTGGTTAATTTGCTTATTTTGTGGTTCTGAGGTTGAATTTTTTGTTTTGATTATTAAGGCTCCTTAGGAGATAAAGTTTTGCTCAGTCTCTAGTTTGTTTTGATGAGTAAGGGTCCTTAGGAGATAAGGTTTCGCTCAGCCTCTAATTTCTTAAAAAGTTGCAATATTTGTTGATTCCATGTGAAGTTCGATTCTTTAGCTTTGATACTAGCAGTTTTTTTAATGAGTTTTGTCTAATTTTGTGTAGTTATGTGGTTTAGATGTTGGAAATTTTGGTTTGGATTAAGTAAGGGTAGTTTAATACATAGAGTTTTATCTTAGGTTAGGTATTATTGATGAACAGAAAGCACCAAAGAACTGCTATGGAGGTTTAAGAGAGGGGTTTTCTCCGGCTTTTGGATTTTCCAAAGTTAACTCCCCATGCTATCTTGAAAAGTTCCATCTTTTTTGTTATTTTGAGTGAAGTTTGTTTCTTAGCTCTGGTTTTTGCAGTTATTCAAAAACTGGTTTTGTGGGTATGGTTTACTTTTTATTTTTTTAGTTTGGAGGTTGAATTTTTTGGGTTTGAAGAGCTAAGTTGCTTGGACTCCGGTGCGGATCTAGAGGCTGGATCCTTCATGATCTAACTTTTAAGATTCAGGGTACATATCCAGGTATGTATTGCGGCCCAAATCTATATGACCTGCACTCGAAGCTCTACCCGACTCGAGGGAACCAATCTTAAAATCAAAGCATGAATACAATCTTTAAACCAACCACCTTTCATTTAAAAGAAAATGCACATGGTAAAGAGTTTCTTGAGACTGAACACTGGTGGGGGTGGCTGCTCTAAGGATAATCCAAGGGCCTAGTGGTGCTGGAGGGATTGTTAGAATGAGCATGGTCAAATAATCAGTGCCTTTGTGATGCCTCTAGAAATTATGTCCAACAAGGCAACAACATGTGAGAAGCTATGGCCCTTAAATCTGGGATCGAGTGGTGTGTTTCAAAAGGGATAAAAACATTGTGATGGAATGTCATTCTTAGTTGCACACTGACTAGGTTATGAACCACCTTCAAACTTATGGGAGACCATTGATGAAATACAGAAGCAAACTTTTAAATTTGACAACTGGAGTAGTTATCACTGTTATAGGGAAGGAAACAAAGTGGCTGACATTTTGGCTAATTGGGGTCTCAGGCGCAAAGAAAAGGTTCAGTTTTTTACTACAACAGGCTGCCTAAAGATGTTAGAGGTGAATTGCGAATGGACAAAGCTCAACTTCCCTCTTTTAGAAGGAAAATGCATAGGAATTCTCTCTCTGGAAAGATACATGTATAGCATTCATAATTTTGATGTCCCTTGACTGTTTTATCTTGCTAAATGATTTTTTTTGTACCTCATAATGCCATCTTATTTTTCTAGCTGATTTGAAATCCTACTAGTCCCATAGAATGGAGGGTTTCCCATTCTTAGTAGGTACAGAGGATTTATTCTCTTCTGTTTTCAACATTTTGTTATATATCTATATATTTGCTTCCACTCTCTAGTTGTAGGGATGGAGGAGATTTAACGAAAAAGGGTGAGGAGTTCCATTCATGCATGTACATGAGTAGCCATAGAAAGACAGCCCAAAATAACCACAACTATCTATGGAATCTCTATGACACAAAATGAAATAATTAACCAAGACAAGCGCTGGTGACCAAAAGAATAATAATAGATGGCCTCCACAACTACAAGTTTGGAGCCTCACCAAAGTATTGACATGGGATGTGGAACAATACTATCCACGAGGCCCAGTCCTTGAAAATTGAAATGGGAGTTGATAAAATATGATACATGCATAACAATTGATATAAGAAGGAACATTTATATCAATTAACGACTGAGCGGGAAAAATTATAAATAATGCAATACATGTCCCTAATCATTCTTTAAACACCACACTTTACGTCTATGTTGCTTGGACTCTTCAAACAGGTACATGTTGAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCAGACATGGTTGCGGCAACAAATTTGGAGAGTTCGAGCAATCTTAACTTTATGTAATCAAGACAAGTTATTCATTTACAAGGATATCACACTATAACCGACACAATTGAAAAGTCAATTAGGTTATGTACCTAGCGGCAATTATCATATGCCCCACTTATTCAAGTCGTCTCATCGTAGTGCCGCACATAACGATTCAAGTCATGCTAAGTAGCACAATAGTATCCTATCATGGAGGCACTCTGTCGAAGTTCCAAACCATAAGTTCAGCTCTATGCCTACACCAACACGTGTAGTTTCATGACCTAACAAGGAAAATATCCAAGGCCAATCTTGGCGAACTCGAGCAACTCCAAAGTAGTTTATATGTTACCATTTCGGCATTTATAGCCAATCCAACCATTTATGAAAGGTTAAGTAATGATAGGTTTAACAATTCATGAAATTCATTTAATAAAAGTAGGTAAAAATTTCACTTCTTCCTTACTTAGCTTTAAGAACCAAAACGACATTTCATTTCAAGAAATGAAATGGTGAAATCCCAACCCACTTGTACCCACAAGTTAGGATTCACACTTATAACGCATTGCAATATGTGTTTGGGGGAAAAGCTCTGAAGTGTAGTAGGTTTCAACATATCTCGGACCACTTTCCAAATCTTTTCCCAATGGATCCAATGATGCTAACAATCCACAATCTACATATCCGAGCTTACATAAATCATTAACACGTCGCAATAAGACCACATAAGTCAGCCAAGTGACTAGCACTTAAATTAAGAAGGTCTGGGAGCAATCTTTATTATACAATTTGAAAGTCAACTCTCTGAGTTTTAACTCCAATTCATCCACTAAACGTGTTGTGGAATCTAGTCGCTTCACTAGATACCCAAACCTATCGCTATTCAACATCTTTACCAACAAACGTCCAATTCCAAGAACAAGTAGAGGGAAACTATCCATTGTGTAATGCATATGTGCTATACTACTGAATAAGAATTTGAAATCGGTCATCATTCATCTTAAGACATCCCGTCAACAATTTGACTCCTCCTTGAATAGTTAGTTCTATAGAGTTCCTTCAACGTGAAATTCCTGATAGCTATTTATGTGAACATATTTTCTCCTGAGTGTGATCTTCTACCTTTTTTTGTAGCTTCCCCTCTCTTGTCCTCTTGTTGTTATGCATTATTTGTCATTGGGTGGAATTGGAAGAAGACCATCGAGACAAGGCTTGTTCTACTTAATCTTTAACATAAAGTGGATGAATCTGTGTGAAAGCACGCGAGGGGAGGAGGAGGGGAAGGGGTAAATTTTTGATGATCGAAACTTAGTTGAGTTAAGCTGAATGCAGTTTCTGCTTAGATAGAAAAAAGATAGCCATGTATCACCTATAATTTAGAAAGAGAATGTGAATAAATTAAGGACAAAACATAAAATGACATCAAATGTTTTTATACTAGTTTGCGCACCAATGTGGTGCCTTTAATCTCTTTGCAAATGTTTTCAACGTAGTACAATCACTAGTGTTTTTACGCATTCACCACATAATGTTTATCAACTAGCTTTTCTCACACACTTAACAACCAATTACAGATTCTAGTGTGCTTGATGTCTTCACATTACTTCAAATTTATAGGGAGCTTGATTTGTAGCCACTGAACCTTCTCTTGATACTTGTTGTGTCTTTGACTGTTGTTGATCATTACCAAGTAACTAATGGCTCCTTTCTTGAATTCAATTAGAGATGTTGTTGTGTAATCCAAGGGACTCTTAAATGTTAGCTGGCCTTTCTGAAATAGAGACTTCTTTTAATTGTTGATTTGTGGGCTTTCTTCCTTGTGGGCTTCAAAATTTGATCTCTGAGTTATTCTTCTTGTGTTGGCTTTGTATGCTTTTGTCTTCATATGATCTTTGGGCTTCGTGTTTTGTTCAACCATGGATTGAACCAAGCTTTGTCCGGGCAATCTTTCAATGGGATGTTTTTATTCATCTTTATCAACTATTCTGTCTTTTTCTGCTTCAATCAAGATGTACTAGGGCTTTACCTGCCTCACATTCTCCCTTTTCTTTCTTAAATTTTTTGTTTCTAAGAAATGAAGGGTGTCTTCAGTATGAAGGGAAATGTTTTCTTGGAAAATAAGAGAGTTTTTACTTATTATCTTGTGTTCGGTATGTAAGCAAAAAATATAATCCTAAAATCATTTGCATTTAATCTAGACAAATACTCTGCTATGGGAGGTGGGAATGGGGTAGGGGTGTGGGGTGGTGGGGATAGAGACTACGGGGGATCGAGGTGACGATGAGGTATGTTGTGGAGGGTTGGGATGACACAATTAATATGAAATGCCACTAGTGGAATTTGTTTTCCCTCCGTCCACTAGGGAAGTCATTTGCCTCATTTTTAAGCAACTTGTTTCCTAGATAATGTTCTCCAAAAAATTTGACCCACTGAGCATGAGAAAATTTGAAAAATTTTCCTCCATACCAAACACCCGAAGTGTGTTCGTTTTCTTATACCCTTCACCCTCAGGCCTGTTATCTGTAGAAATGAAGCGTGTATCAGATGTTTCTAGATATGAGATTTTCTTTAAGCTGAGAAGTGAGTATCATGGCACATGTCTATGTGACAGGTTAGGTTCCATTGTTCATCATTTCAGCACAGTAGCTTTGACAGAGTTTTATTGTTAAGATCTTGTTTGGCATCTTTGAGGAACACCTTTTTCCAGGAAAAAATTGTTAAAAGATATGTTCATCTCGTACGAGATTCGGACTATGTTGTAGATATGCTAGAACATTTTCCAGAGATGTTAAAAAATTGTTGAAAGGTATGCCCTTCTCATATGAGAGTCAGACTATGTTGTCGCAAGCTGGAAGATTTTTCAGAGATGTTGTGCAACGGCATTACTTTGATATGCATGGGTTGGGTAGTTGGATGAGAACACAATTTCCAGTATGAGAAGACAGTTGTTTGATTTGGTGACTTTTAGCATAAAGCAACAGGGCTATACCATTTTACGGGTGCTTGATGTGCTAAGGGGTTGTTTGGTTCACGGTGTAGTTATGCAAGGATTGTAATGTAGGGGCTGTTATGTGGTAAATAATAATGTAAGGATTGTGGTGAATGATTTATGCATGAATTTTCATAAATATTATTACTATAGGCACTGCTTTATACCTGATTTTGATTTTCTACTGAAACTGCTGTTTGAATGCAGCTAAAAATCTGTGTTCTAACATATCTGGATCTTCAGGGATATAAGTTTAGCAGGAGATTTAAGCCTTTTGATGCTCGTTTGTGTTTCAGAAAGACTTCCTAGATTACTTGCAACACTTTTGAGACTTCTTTATTTCTTTTCCACCTGAACCAAGGACATTTTGAGGAACTCAAAAAAAGAGATTGGAGAAGATATTTCAGGAGAGGTAGAGGTAGACCTAAGAAGTATTGGGAAGAGGTGATTAGGCAGGACATGATACATTTTCGCTTATGAACGACATGACCTTAGATGGAGAATGTCGAACGGATTAGAGTAGAAGGGAAGTAGGTAGCAGTACATTTTCTTGCTGGCCGTTCATATCAGTAGTAGTAGTATTGCTCCTGTTGTTTCTTGTCCTTCGGTTTCTATTACTATCTGTTGATTTTTTGTACCCTAACTATTGTATTCTTTTGTTGTACTTTCTGTTTGTTTAGTTACTGTATATGTTGTTTTTTGTATCATTGGTTGTGAGCCGAGTCTATCTGAAACAACCTCTCTACCTCTAAGTGGGGGTATGGTCTGTGTGGACTCTACCCTCCCCAGGTTCACTTTGTGGGACTTCACCGGCTATGTTGTTTTTATTTCTTTTTAAATATGACTCTCTTTCTGTTCCTTTGCAGTTTCTGCCTAAAAAAGGAGGTACTCCCAAGAAGAATGATATCGTATTTACTGCACCAACAGGAGAGGAGATCACCACAAGAAAACAGTTGGAACAGTACCTGAAGTCACACCCTGGTGGTCCACCAGTAGCGGAGTTTGATTGGGGAACTGGTGAAACCCCAAGAAGATCGGCGAGGATCACTGGAAAGGCAAAGGCAACTCAATCTCCTACAGAAAGTGAACCTGCTAAGAAACGAGGCAGAAAGTCTTCAGCTTCGAAGAAGGATTCCAAAGACAAAGAAGTCACTAAAGAAACTGAAGCAGCAAAGGATGATGACATGGAGGAAGCTGAAAAGCACGAGAAGGACACTGCAGCAATGGAATCTGAGGAAGATGTTGAAAAAAAAGAAAATGAGAACCCAAATGAAACTCAAGATGGAGAAAGCGAAGTGGAGAAGAAAGATGAAATCCAATCTTCTGAGAAGGATGTTGTGAAGGAGAACTTAGATGAAGGCCAAAATGTTCATGACAAAGTAGAAGATGCTCAAGTTGAGAAAGACGTTCAGATGGCTGATAATGTTGGACCTTCTCAAGATGTTGAAGAGGCTCCTGTTGTTAAAGCAGCTGATGGTCCTGACGCTACTAAAATTAACGAGGAGGAAAAGGATGTACAGGTTCAAGAAGTAGAAAAGGTACCTACTGAAGAAGCTCACATCGAGAAAGATGTTAAGATGGCTGATAATGATGTTGAAGAGGAGACCCCTGCTGATAAAACAGCTGTTGGTCCTGAAGCTACTAATATTAACGAGGAGGGAAAGGATGTACAGGTTCAAGAAGTGGAAATATTACCTACCGAGGAAGCTCAGGTTGAGAAAGATGTCAAAATGACTGATAACATTGGACATCCAGACGTTGTTGAAGAAACCCCTGCTGATGTTCCTGAAGCTACTAAACTAAATGAGGAGGAAAAGGATGTACAGATTCAAGAATCAGAAAACAAACCTAATGAAGAAGCTCAGGTTGAAAAAGATGTCAACAATGTTGAAGAGGCTCTTGCTGAAAAAGCAGCGGAGGAAAAGGATGTACAGGTTCAAGAAGCAGAAAAAGTAGATCCTAGCGCTGCTGAGGAGTTGAAGCATCAAGCAGAAGGAAAGAGTACTGATGATCAAGATAATTTGATGAACATTGAAATAAGTAAGGTGGAGGGAGAAGTAACTGAGAATGGCAGCAATGCCAACGAGGCCAAGCCTTGAGCAGTGGTTCTCTCTAACTCTAACATTTTGCTCTTTTTGCTTCATTTGGATGACTGTAGTGTTGTCAATTATAGATACTCTGATTGTTCATGAGAGACATCTGTATGCAAAACCATAGATTTAGGTCCTAAATATTGCTCTGTAAGGATTTTATCGCCTGTACCAGTACTACTGTATGCCATAGATTTAGACTTTCAGCAGAGACACTAGTGCTGAGGTAATTTGTAGTTGTCCAGATCTGCAAAACTATTGTTAGTACTCAGTATGTAAGCTTATAAAAAGCCTGTGTTTTCTTGACTA</genome_strand>
        <mrna_strand>TTTTCTATTTTTTTTTTTTTTTTGGGAAATTTTGGTTAGGTGGGAAATGGCGAAATCAGTGGAGAAAAATGAAGTTGTGTCTATTGAGCTTCCAGCTCCTTCTGGTTGGAGCAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGCCTAAAAAAGGAGGTACTCCCAAGAAGAATGATATCGTATTTACTGCACCAACAGGAGAGGAGATCACCACAAGAAAACAGTTGGAACAGTACCTGAAGTCACACCCTGGTGGTCCACCAGTAGCGGAGTTTGATTGGGGAACTGGTGAAACCCCAAGAAGATCGGCGAGGATCACTGGAAAGGCAAAGGCAACTCAATCTCCTACAGAAAGTGAACCTGCTAAGAAACGAGGCAGAAAGTCTTCAGCTTCGAAGAAGGATTCCAAAGACAAAGAAGTCACTAAAGAAACTGAAGCAGCAAAGGATGATGACATGGAGGAAGCTGAAAAGCACGAGAAGGACACTGCAGCAATGGAATCTGAGGAAGATGTTGAAAAAAAAGAAAATGAGAACCCAAATGAAACTCAAGATGGAGAAAGCGAAGTGGAGAAGAAAGATGAAATCCAATCTTCTGAGAAGGATGTTGTGAAGGAGAACTTAGATGAAGGCCAAAATGTTCATGACAAAGTAGAAGATGCTCAAGTTGAGAAAGACGTTCAGATGGCTGATAATGTTGGACCTTCTCAAGATGTTGAAGAGGCTCCTGTTGTTAAAGCAGCTGATGGTCCTGACGCTACTAAAATTAACGAGGAGGAAAAGGATGTACAGGTTCAAGAAGTAGAAAAGGTACCTACTGAAGAAGCTCACATCGAGAAAGATGTTAAGATGGCTGATAATGATGTTGAAGAGGAGACCCCTGCTGATAAAACAGCTGTTGGTCCTGAAGCTACTAATATTAACGAGGAGGGAAAGGATGTACAGGTTCAAGAAGTGGAAATATTACCTACCGAGGAAGCTCAGGTTGAGAAAGATGTCAAAATGACTGATAACATTGGACATCCAGACGTTGTTGAAGAAACCCCTGCTGATGTTCCTGAAGCTACTAAACTAAATGAGGAGGAAAAGGATGTACAGATTCAAGAATCAGAAAACAAACCTAATGAAGAAGCTCAGGTTGAAAAAGATGTCAACAATGTTGAAGAGGCTCTTGCTGAAAAAGCAGCGGAGGAAAAGGATGTACAGGTTCAAGAAGCAGAAAAAGTAGATCCTAGCGCTGCTGAGGAGTTGAAGCATCAAGCAGAAGGAAAGAGTACTGATGATCAAGATAATTTGATGAACATTGAAATAAGTAAGGTGGAGGGAGAAGTAACTGAGAATGGCAGCAATGCCAACGAGGCCAAGCCTTGAGCAGTGGTTCTCTCTAACTCTAACATTTTGCTCTTTTTGCTTCATTTGGATGACTGTAGTGTTGTCAATTATAGATACTCTGATTGTTCATGAGAGACATCTGTATGCAAAACCATAGATTTAGGTCCTAAATATTGCTCTGTAAGGATTTTATCGCCTGTACCAGTACTACTGTATGCCATAGATTTAGACTTTCAGCAGAGACACTAGTGCTGAGGTAATTTGTAGTTGTCCAGATCTGCAAAACTATTGTTAGTACTCAGTATGTAAGCTTATAAAAAGCCTGTGTTTTCTTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327364" ref_strand="+" ref_description="SGN-U327364        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G35410.1 | Symbol: None | CBL-interacting protein kinase 24 (CIPK24) / serine/threonine protein kinase (SOS2), identical to CBL-interacting protein kinase 24 (Arabidopsis thaliana) GP:14701910:gb:AAK72257, serine/threonine protein kinase SOS2 (Arabidopsis thaliana) GI:7453645 | chr5:13651769-13655421 FORWARD | Aliases: K21B8.3, K21B8_3 (evalue: 0, score=662) genbank/nr: gi|66765941|emb|CAG30526.1| calcineurin B-like interacting protein kinase [Lycopersicon esculentum] (evalue: 0, score=876)">
      <seq>aatcgatcagatttctccgttgctcaatttcccggcgatttctccaccggaatttctccatttccggtttttgatgagctatagttgaaggttgctttgcttttggtgatctgtgggaaatgagtgttcagtgatgaagaaagtgaagagaaagcttgggaagtatgaagttggcagaactattggtgaagggacatttgccaaggttaagtttgcacgaaacaccgagactggagagaatgttgccattaaagtcttggccaaaagtaccattcttaagcatagaatggttgaactgatcaaaagagagatatctataatgaagattgtcagacatccttgcatagttcgacttcatgaggttttagctagccagacaaaaatatatatcgttcaggagtttgtcactggaggagagctttttgataaaattgttcatctaggtaggctttctgaggatgaagcaaggagatacttccaagaactcatagatgcaattgctcactgtcacagcaagggtgtttaccacagagatttgaagcctgaaaatttgcttcttgatttccaagggaacttaaaaatttctgactttgggcttagtgcattgcctcaacaaggagtcgagctcctctataccacttgtgggactccaaattatgttgcacctgaggtgttaggtaaccgaggttatgatggtgctgctgcggatgtgtggtcatgtggtatcatcctttatgttctgatggcaggatatcttccatttgatgagacagaccttcctaccttgtatacaaagatcaaggctgctgaattttcctgtccattttggttttctcctggtgcaacatcgttgattcaaaaaatcattgatccaaatcctcaaactaggatcaagattgatggaataaaacgagacccttggttccggaaaaactacagagctgttaaagctaaagcagatgaagtagtgaatcttgatgatatccatgctgtgttcgacgacattgaggatgcatttgtcagtgaaaaatcagaagatagtgagagtggtcccttggtaatgaatgcatttgagatgataacactatctcagggattaaatctatccgctttgtttgacagacgtcaggattatgtcaagcgtcaaactcgatttatttcccgccaacctgctaaagtcgtcattgaaactattgaagcagctgcagagtcgttgggtcttaaggtccacacacgcgattacaagacaagaattgagggggtaacggcaaatagggctggtcaatttgctgttgtgctggaggttttccaagtagccccttccctttttatggttgatgttagaaaggctgctggggacactcttgaatatcacaagttctacaaaaccttctgcacgaaaattgacgacgtcatttggaaaccgaaggaaggcatgtcaaatgctgttctgcttaggacaaggactcgctgaaccagatttctgggaatgaagtgaatcacttatcaatttgatgtgctccgaagacgttcgttgtgttaggtatagtgtgtgtaactgcatgttgttaatcttttgttcactacatatcttaagtgataaatcatgggctcaaaagcaatacaagtagggttgtaaatgagacggttcgatcagttgtaaccaatttttcggatattatataatgtataaccaaaacctagacttttcaaaaccatcccaataatatcggtttctctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="67159" stop="75175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67459" g_stop="67524" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67525" i_stop="68071" i_length="547">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68072" g_stop="68303" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="298" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68304" i_stop="68926" i_length="623">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.030" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68927" g_stop="68989" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="361" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68990" i_stop="69107" i_length="118">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69108" g_stop="69179" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69180" i_stop="70195" i_length="1016">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70196" g_stop="70303" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="541" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70304" i_stop="70383" i_length="80">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70384" g_stop="70458" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="616" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70459" i_stop="70562" i_length="104">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70563" g_stop="70616" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="670" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70617" i_stop="71498" i_length="882">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71499" g_stop="71624" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="796" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71625" i_stop="72146" i_length="522">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72147" g_stop="72236" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="886" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="72237" i_stop="72618" i_length="382">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="72619" g_stop="72741" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="1009" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="72742" i_stop="72912" i_length="171">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="72913" g_stop="73032" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1129" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="73033" i_stop="73555" i_length="523">
            <donor d_prob="0.715" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="73556" g_stop="73672" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1246" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="73673" i_stop="74188" i_length="516">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="74189" g_stop="74245" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1247" r_stop="1303" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="74246" i_stop="74329" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="74330" g_stop="74404" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1304" r_stop="1378" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="74405" i_stop="74510" i_length="106">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="74511" g_stop="74875" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1379" r_stop="1744" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U327364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1743</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67459" e_stop="67524"/>
          <exon e_start="68072" e_stop="68303"/>
          <exon e_start="68927" e_stop="68989"/>
          <exon e_start="69108" e_stop="69179"/>
          <exon e_start="70196" e_stop="70303"/>
          <exon e_start="70384" e_stop="70458"/>
          <exon e_start="70563" e_stop="70616"/>
          <exon e_start="71499" e_stop="71624"/>
          <exon e_start="72147" e_stop="72236"/>
          <exon e_start="72619" e_stop="72741"/>
          <exon e_start="72913" e_stop="73032"/>
          <exon e_start="73556" e_stop="73672"/>
          <exon e_start="74189" e_stop="74245"/>
          <exon e_start="74330" e_stop="74404"/>
          <exon e_start="74511" e_stop="74875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATCAGATTTCTCCGTTGCTCAATTTCCCGGCGACTTCTCCACCGGAATTTCTCCATTTCCGGTAACGATTCCGCCAGCAACTCGCCATTTTTCTTTCTTATACTGAAATTTATTATTTACTTGAATTCAATTTCATAATTTTGTTTTTCTCTCGTCAATCGCGTTAAATTTAGGTCGAAGATGGAAACTTTGCGGAAATCAGCTTTTATGCTTTTTCTAGTTAATGTAATTTTCCGTTTTAATTTCTGAATTTGGATATATACACAATTGAAAATTGCATTTCGAGTTGTAATGGTAAATATTTTCTGTTCTAGGTCTATGTATTAAGTTTCTTCAATCATATGAGTATGTATATGCGATAAGTTTTTATACCTGTGAAAATTGCATATCCCGGTTTCAATTTATTTGTCTGATTTTTACTTTAACAGAAATAATTTTTTTTTTAAAAAAAGGAAAGAGGCATTCTTTTTTAAATGGATTAAAAAAGTAAGGCAAGCGAATTGAAACGGAGAAAGTATTTATTATATGTGTGCATTTTCACATGTAATACATGATCAGCTTGAGTTGATCTAGATTACTGATTAGTTTTATTGTGATTCAATTGACAGGTTTTTGATGAGCTATAGTTGAAGGTTGCTTTGCTTTTGGTGATCTGTGGGAAATGAGTGTTCAGTGATGAAGAAAGTGAAGAGAAAGCTTGGGAAGTATGAAGTTGGCAGAACTATTGGTGAAGGGACATTTGCCAAGGTTAAGTTTGCACGAAACACCGAGACTGGAGAGAATGTTGCCATTAAAGTCTTGGCCAAAAGTACCATTCTTAAGCATAGAATGGTTGAACAGGTATTAAGATATACTTCCCTTCAAACACTCGAGTATATGCTTTACATGTCCTGCATTTTTGTTATTTTATTTTGATAACAGTGGTGTTCACATATCCCATATTCAAAGGTTGGAGCTTGATAATTAGAAAAGTTATTCTAATCTGTGAAGTGATTATTATTGAACTTAGGTCTGAAATCTTTTCTGTCGAACTTCAGTAGGCTTTTCTGATCTGATGTGAATCAAGGGTAACCATGACAGCTTCAGTGGTGGACTATTAAGCTCACATTGAACGCCGTAGCAATGAACTCTGTTATCAAAATTGAACTATGTGAATGTGCCTGGTATCTGAGCTGAATTCTATTAGTGAACATCAGCATGTTCTCCATTATTGAGTAATTATAGTCAAATTTTAGTTGGTTGATGGATTTTTAAGCCTCTTAACTGATGGTTGGCAATAGTTTAGCTGTGTAAAAGAATTAAGATTTGATCATATTGAATTTTTATTATCTGTTTGCATTTGAAATAGATTTCTGTGTTAATAGAGCACATTCTGGGGTCTGTGTGTGATTATTCTACCGTCCTTGTTATCCATGTCTGGCATTTTGGCTGATCAATGTGCTGTTCTTTGAGATGGTTTCCAGATCAAAAGAGAGATATCTATAATGAAGATTGTCAGACATCCTTGCATAGTTCGACTTCATGAGGTAAAAAGAAAAAAAGAATAAAAAGTATTATATTACAAATACTACTGTGAGTTTGGTTGTTCTATTATCGTTGCTACTTGCTGTTGCTGATGTTTATTGATTTTGTGTTCCCTTGTAGGTTTTAGCTAGCCAGACAAAAATATATATCGTTCAGGAGTTTGTCACTGGAGGAGAGCTTTTTGATAAAATTGTAAGATTCCTTAGAATTTTCAATAAGATTTTTCCTTCTTTAATCAATAACTCTTGCAGACTTCTTGTTCCTTGTATGTGATGATGGATAACTCTCCATCTGATAATGACTAGGAAGGTAATCTGTAAATGAAAATAGAGGCACGATTGAGACATTGTTGCAACTAAGATGTGTGCCCATGACGAATTTCTATGAAGTGATAATCTTCATTTATTAGGATGAGCTGTAGTTTGGGTCAAGATACTTATGGAGGATGGGGAAGTAGATAATGGAGTGAGCAGCAGATATCTTTGGTGCATCCTATACAATATTCACAAAGCAATAGTCTGGTGGAGTAATCTGTATAATGAGAAATAGAGGCATGACCGAGATATCTCTTTTTTATATTTGAAAAATAGAGGCATGCTGAGATATCCGTAGAAAAAGACATTCTGTATTTGGATAAAGTAATTCCAGTCCATGCTTTTTATGTGGAGAGCTTGGAGATCATTTTCTTTACTCTCAAAGCAGTTAAGAGTGTGTTGAGTTACCTTCTAGTAAGTCAAAAATTCCATCTGATCAAGAGGTTCCTCTGGATAGGTGTTACCAGTCTTATTTAAGCACAAGATAGTGATCGGAAATGCTTAATTTGTCAGTGACGATTTAGCTTTAAATCAGTTTTTCTCTGTCAGAGATGAACTCTATCGAGAAGGATTATTTTCGCTTATGAACTTTGTACATTTTTTTCAGTATTCCTGAATAGTTGGTATGAAATGCATGATCCAGCCTGGTTCTGATCAACTAAATCTCATCCTCATCAAACATATAAATTGTTGGGTTACTTAGGTATAAGCTGGTTCATTGATAGTAGTCCAGTTTCCAATTAGGCACTTGCGTCTTTACTAGTTTACTTCAGCTCATGGAGCTTTAACCCTTTATGGTTTATTTTGTCCTTCTCCCTATGAGTTATCAAGGTTTGATTTTCAAGATTTAGTAATGTATCTGTCTCTTCAATTCTATATTCGTTCAATTTATAGGTTCATCTAGGTAGGCTTTCTGAGGATGAAGCAAGGAGATACTTCCAAGAACTCATAGATGCAATTGCTCACTGTCACAGCAAGGGTGTTTACCACAGAGATTTGAAGGTTCGCAATTGCTGATTGGAAGAGATATTTTGTGAAAATTATATATCTTAATCTTTTAACTATTGCTCCTTGTTCCCCAGCCTGAAAATTTGCTTCTTGATTTCCAAGGGAACTTAAAAATTTCTGACTTTGGGCTTAGTGCATTGCCTCAACAAGTAAGCAACATCTGATGTTAGTTGCATTAGATTGTATATCTATTTTTGTTTCTTTCCTTGTTCATTAGAGCTTCTAAATGGGAATTTACTCAAATCTCTAACAGGGAGTCGAGCTCCTCTATACCACTTGTGGGACTCCAAATTATGTTGCACCTGAGGTATGATGCATATATATTTTGAATGTTCTTCTTGTTTTGTACATGCAACCCTTCATTCTTCATTTGATTGGCTTGCTATCCCAAAACCCTTTGTTGAGAATATAATTGAGTAATAAAAAATGTACTCTCTCTAACACCTTAAGCTTTTAGATGAGATGGTCACACACTTCAACATGGTATCAGTGCCAAGCAGAGGTCTTGAGATCGAATCTCACCACCACCCAAAATTAAGAAGAATTTCCACGTGTTTGGCCTGAATTTATTCATGACAGTTTCTTATCATTAATATGTAACTTGCACCAGCTATACTTATTGTTTGGTTCTGCCTAGATTTAAGTTATATCATTAATATGTCACTGAGTATTGTTTGATTCTGCCGTGCTAGCTCCGACTTTCAGGTTCATTGATTAGAAACTTAGGTCCTCTTATCTATTTTCCCATTCCTCATACATCCTCAATGATGTCCACAATAATAAGCACCGTGTGTATTTGTTTTATCTGCAAGGAGCTTGAATCAGAAAGAAGCGAAGCAGAGGGGTGGTTGTCTTTCATTTTAATTCATTGCTATCCCTTTTACCTAGCATGATCAATTGGCTTTTGATTAGTCATCAAATGAGAGAGAATCAGAATTTATTTCCCTTCCATGAGCTCTGTAGTAATATACCTTCAAATCATTGCAGTAACTGTCAGTTACCTTTCTTTGGGTAACATCATAACCTTGTGCTGAATTGTTTAATATAAGAGGTTTGCATCAAGTTGAATTTGTCTGAACTATGTCAATTGCTGAACATATGTTAATTTGCTTACTATGTTTTCTTATATTCGAATGTGTTTGGACTCTTTCTGTGGTAGCTGGCTTATTACTCTTAGTTACTTCTTCAGGTGTTAGGTAACCGAGGTTATGATGGTGCTGCTGCGGATGTGTGGTCATGTGGTATCATCCTTTATGTTCTGATGGCAGGATATCTTCCATTTGATGAGACAGACCTTCCTACCTTGTATACAAAGGTTAGATGCAGTCATCATGCATTTGTAATGTGTTAAATGGAAGCATAGATAATTCTGTCAAATGATTCTCTTTTTCTTCTTATATAGTGACAAATGCTAAGGATCATAGGTCATATGAGGGACAATATTTGTTCTTTTCTCATATGTATATTATTCATTTCTGATTAGGATTGAGGTGTAATGAGTTGATTGATATATTTATTCAGCTCTCTGACCTTTGTGTGAAGGATAAGCTCTCTTTCACTTGGCATCGACCACACTGCTCTCATAAAAAATATTGTTCCGTATTTTTAATTTCATCTTCATCTGCATGAGTTTCCTCCTTGTGTTTTTTATTATTACCATTATTTGTTTTTTGTTTGTTTTTTATTAGATTAATTGGGGCTTTAAAAGAACTTGACATTACTTGTACACGGCTTGCTATATGTTAAAGTTATTGTTTGCTCTATGTGTGGCTTACTATATGTTAAATGTTATGGTTTGTTCTGCACAAATTTCTTATTGCTTTTAATATTGACACAGATCAAGGCTGCTGAATTTTCCTGTCCATTTTGGTTTTCTCCTGGTGCAACATCGTTGATTCAAAAAATCATTGATCCAAATCCTCAAACTGTAAGTGCACTATATTTTCAACCCTGAAAACTATGGTGTCCGATTGCCTATTTGTCACTTAATTATTCAATCTACTATAAGCTTATAACATTAAAGTTGTACTGGAAAAACAAATCCCTCATGATGAAATATGAGAAGCCCCGTAACATGGATTAAATTCCTTCCAAATTTCCCGGATTGGTTATAGAAATCCTTTTTGAGGTCATTTTAAATGTGAGAAATGCCTTAAGCATGCCTTCTGCTCATTCTTTGCTTTTGTTCAGTATAAGTGTTCCTTTTCTCATTCCCTCTTTCTTGGTTAATTTGTGAAACTTCAGCATAACATGTACAAAAGTCCTTTTAGTGTTTTCATAGTGATTTACTCAGAACCATGTACATGCAGAGGATCAAGATTGATGGAATAAAACGAGACCCTTGGTTCCGGAAAAACTACAGAGCTGTTAAAGCTAAAGCAGATGAAGTAGTGAATCTTGATGATATCCATGCTGTGTTCGACGACATTGAGGTTGAATCTTTTCACATTCGTCTTCTAGTATGCTAACTAGTATGTCTGTGTGAGGAAGTGATCAAGTTTAAGATAAATTGTACTCTGGATTTAGATTAACTGAAGTGATTGGCCTGATACTTCGATGTTCTCACCCATTATAGGTTTGATATGTTCTATTTTTATGTGCAGGATGCATTTGTCAGTGAAAAATCAGAAGATAGTGAGAGTGGTCCCTTGGTAATGAATGCATTTGAGATGATAACACTATCTCAGGGATTAAATCTATCCGCTTTGTTTGACAGACGTCAGGTACAATGATTAATTTAGTTCATGGACCAAAAAATAAACCATACCCGACGTTTCCAGATTTTAATTCATCACAACGTCATCTGTTTTATCTCTTTCTCCCGCTTCTTCTTGTAAGCTTTTCGTTTCTTGGATAAGGAAGAGAATCTGATGGGATATGTAAATTGATTCTTCCTTGAATTTTTAGTTAGCATGCTCTTATATAGAAGCACGTTAATTTATCTCTCACTATTTTTGGCCTCTTTTTTTTCTCCTTTTTCCTTGTAGTCAAGTGGCTCAGAGCCAATGCTACATAATATCAACTTTTCTAAATCTAATTTTAGATCAAATACGTCGCGATTATTTTTTCGTTTAAAAAAAAAAGTGTCAGATATGATCTGAATAGCTTATATTTTTAATGATTGAGTTATTTATGTTTCTACAAATTTAAAAATGCTGACATGTGTAGTAGGTTGTCTCTTTGCTATTAAGGTTTTGACAACTTCCTTCTTATAACAAAGAGTAATTTCCTCTCTCATTCTTACAGGATTATGTCAAGCGTCAAACTCGATTTATTTCCCGCCAACCTGCTAAAGTCGTCATTGAAACTATTGAAGCAGCTGCAGAGTCGTTGGGTCTTAAGGTCCACACACGCGATTACAAGGTATATTTCTAACTCTCCATATTCAGGGACAAATGATTCTCTTTTATTCAAATTTGAATTCAATCAGAATGAAGCATTGTTGTAACTAAATAATCAGTTTCCCATTGGATCAACTGTAATTTTCAGCATTTTTTTTTACCCTTTTCCCACAATCTATTAAACAGCAATTTCCTTTCAACATCAAAGAAAATGGAATATACAGGAGGAATTCACCCCTTCAATTTTTCCTGCTCTTTATAAGGAGCAAAATCGTAACTGTGCCACATAAGCTTTAGTCGCATTTTGCTTAACACTGAATGAATGATGGTTGTAAATTTATCTGTTGCTTAAGATGCAAACATCTTGGAACTAGGGGCAGATCTATAATTTTATAACACAGAGCGAGGAGTACCACTCCTTTTTGTCACTGGATACAAACTAATGGTAATTCTATCGTGTTCTTAAACGAGAATACCCTGGGTAAGTTTCTCGTTATTGAGTGGGAATTGATTTATTGAACCACTCTTCTCATTGCAGACAAGAATTGAGGGGGTAACGGCAAATAGGGCTGGTCAATTTGCTGTTGTGCTGGAGGTAACTTTAAACTTAATAAACCGATTCATCTTAAGATCGGTGTTTCTTATTTTCATTTGACCACTCTTTCTATAATTTGTGAAGGTTTTCCAAGTAGCCCCTTCCCTTTTTATGGTTGATGTTAGAAAGGCTGCTGGGGACACTCTTGAATATCACAAGGTTGCTTCTACACTCAACTTTGACTGATTTTTTTTTTTTCACTATAGCTTGCATTACATACTTATATTTAGCTTCTGCACGAAAATGACGTTATGTGCATTTGCAGTTCTACAAAACCTTCTGCACGAAAATTGACGACGTCATTTGGAAACCGAAGGAAGGCATGTCAAATGCTGTTCTGCTTAGGACAAGGACTCGCTGAACCAGATTTCTGGGAATGAAGTGAATCACTTATCAATTTGATGTGCTCCGAAGACGTTCGTTGTGTTAGGTATAGTGTGTGTAACTGCATGTTGTTAATCTTTTGTTCACTACATATCTTAAGTGATAAATCATGGGCTCAAAAGCAATACAAGTAGGGTTGTAAATGAGACGGTTCGATCAGTTGTAACCAATTTTTCGGATATTATATAATGTATAACCAAAA-CTAGACTTTTCAAAACCATCCCAATAATATCGGTTTCTCTTTGG</genome_strand>
        <mrna_strand>AATCGATCAGATTTCTCCGTTGCTCAATTTCCCGGCGATTTCTCCACCGGAATTTCTCCATTTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGATGAGCTATAGTTGAAGGTTGCTTTGCTTTTGGTGATCTGTGGGAAATGAGTGTTCAGTGATGAAGAAAGTGAAGAGAAAGCTTGGGAAGTATGAAGTTGGCAGAACTATTGGTGAAGGGACATTTGCCAAGGTTAAGTTTGCACGAAACACCGAGACTGGAGAGAATGTTGCCATTAAAGTCTTGGCCAAAAGTACCATTCTTAAGCATAGAATGGTTGAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGAGAGATATCTATAATGAAGATTGTCAGACATCCTTGCATAGTTCGACTTCATGAG......................................................................................................................GTTTTAGCTAGCCAGACAAAAATATATATCGTTCAGGAGTTTGTCACTGGAGGAGAGCTTTTTGATAAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTAGGTAGGCTTTCTGAGGATGAAGCAAGGAGATACTTCCAAGAACTCATAGATGCAATTGCTCACTGTCACAGCAAGGGTGTTTACCACAGAGATTTGAAG................................................................................CCTGAAAATTTGCTTCTTGATTTCCAAGGGAACTTAAAAATTTCTGACTTTGGGCTTAGTGCATTGCCTCAACAA........................................................................................................GGAGTCGAGCTCCTCTATACCACTTGTGGGACTCCAAATTATGTTGCACCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGGTAACCGAGGTTATGATGGTGCTGCTGCGGATGTGTGGTCATGTGGTATCATCCTTTATGTTCTGATGGCAGGATATCTTCCATTTGATGAGACAGACCTTCCTACCTTGTATACAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGGCTGCTGAATTTTCCTGTCCATTTTGGTTTTCTCCTGGTGCAACATCGTTGATTCAAAAAATCATTGATCCAAATCCTCAAACT..............................................................................................................................................................................................................................................................................................................................................................................................AGGATCAAGATTGATGGAATAAAACGAGACCCTTGGTTCCGGAAAAACTACAGAGCTGTTAAAGCTAAAGCAGATGAAGTAGTGAATCTTGATGATATCCATGCTGTGTTCGACGACATTGAG...........................................................................................................................................................................GATGCATTTGTCAGTGAAAAATCAGAAGATAGTGAGAGTGGTCCCTTGGTAATGAATGCATTTGAGATGATAACACTATCTCAGGGATTAAATCTATCCGCTTTGTTTGACAGACGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGTCAAGCGTCAAACTCGATTTATTTCCCGCCAACCTGCTAAAGTCGTCATTGAAACTATTGAAGCAGCTGCAGAGTCGTTGGGTCTTAAGGTCCACACACGCGATTACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAATTGAGGGGGTAACGGCAAATAGGGCTGGTCAATTTGCTGTTGTGCTGGAG....................................................................................GTTTTCCAAGTAGCCCCTTCCCTTTTTATGGTTGATGTTAGAAAGGCTGCTGGGGACACTCTTGAATATCACAAG..........................................................................................................TTCTACAAAACCTTCTGCACGAAAATTGACGACGTCATTTGGAAACCGAAGGAAGGCATGTCAAATGCTGTTCTGCTTAGGACAAGGACTCGCTGAACCAGATTTCTGGGAATGAAGTGAATCACTTATCAATTTGATGTGCTCCGAAGACGTTCGTTGTGTTAGGTATAGTGTGTGTAACTGCATGTTGTTAATCTTTTGTTCACTACATATCTTAAGTGATAAATCATGGGCTCAAAAGCAATACAAGTAGGGTTGTAAATGAGACGGTTCGATCAGTTGTAACCAATTTTTCGGATATTATATAATGTATAACCAAAACCTAGACTTTTCAAAACCATCCCAATAATATCGGTTTCTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315243" ref_strand="+" ref_description="SGN-U315243        Tomato 200607 #1 [44 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein (FBL6), contains similarity to grr1 GI:2407790 from (Glycine max) | chr2:10854461-10857606 REVERSE | Aliases: F13B15.15, F13B15_15(evalue: 0, score=635) genbank/nr: EIN3-binding(evalue: 0, score=1198)">
      <seq>ctttctttgttctctctttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggcaagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaaaaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgtttgtcttaaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="86517" stop="82187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86217" g_stop="85970" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85969" i_stop="85111" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85110" g_stop="82486" g_length="2625"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="2873" r_length="2625" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2874" polyA_stop="2885"/>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U315243" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2873</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86217" e_stop="85970"/>
          <exon e_start="85110" e_stop="82486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAAC</genome_strand>
        <mrna_strand>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCAAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344873" ref_strand="+" ref_description="SGN-U344873        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 2e-05, score=52.8)">
      <seq>aacactataatacagtatatgaaaaaaatttttagcgatatttagttaacgataattagcatgttttagcaatgctaaatttaataatattttaattaatatgaataaaaattttagcatattttatttatgtgtatattgattatcactaaaaaatatttttattacaataacgtaccatgaattaattaatcggaccaatgaatacgttgattcacattataaaattacaaaaatatagtgtttcgaatgtctaaattaacatggtgccaatttggacttccaattattcatcttccacgcgttcaaatgtggtatttttctcttttcatattaagcgttatcgatgtatttttagattaaatttttaaatttttcaataaatttgagattattttaaaaatatataatattattaaattgttatattttaaagaggataaattagcgagatataatcatttctacatagttatcattaatacacatatgaaataaaattagtactagacgtgagtgacatttcgtgattaaagtctttattaatatatgttttgttaattaaaaattaaaatgtatttaataaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="88517" stop="87329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88217" g_stop="87629" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U344873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88217" e_stop="87629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</genome_strand>
        <mrna_strand>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315286" ref_strand="+" ref_description="SGN-U315286        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="90987" stop="92450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91287" g_stop="92177" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U315286" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91287" e_stop="92177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACGTGTTGAGTTTTATAGTTGA-TTTACGATAATATTTGATATATACTGTTCCCTACTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATATTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGAGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAAGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTA-TTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACAAC</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGT-GTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATA---ATAG-TAGT-TATT-GATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="91651" stop="92536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91951" g_stop="92236" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91951" e_stop="92236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAAGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTATTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACAACTACGCCAACACTAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="92975" stop="91943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92675" g_stop="92243" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92675" e_stop="92243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="94049" stop="92014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93749" g_stop="92314" g_length="1436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93749" e_stop="92314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="92637" stop="94644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92937" g_stop="93109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93110" i_stop="93852" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93853" g_stop="94380" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92937" e_stop="93109"/>
          <exon e_start="93853" e_stop="94380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="94053" stop="92896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93753" g_stop="93196" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93753" e_stop="93196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="94663" stop="93307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="93606" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="93606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="94260" stop="93334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93960" g_stop="93630" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93960" e_stop="93630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="94732" stop="93474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94432" g_stop="93774" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94432" e_stop="93774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="95252" stop="93940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94952" g_stop="94240" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94952" e_stop="94240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="96643" stop="95866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96343" g_stop="96167" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96343" e_stop="96167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336817" ref_strand="+" ref_description="SGN-U336817        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="108970" stop="109861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109270" g_stop="109561" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U336817" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109270" e_stop="109561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAACTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="116269" stop="114862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115969" g_stop="115162" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115969" e_stop="115162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATTTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTTTACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="-" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="116928" stop="115680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116628" g_stop="115980" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116628" e_stop="115980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336817" ref_strand="+" ref_description="SGN-U336817        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0146I19-KIktC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0146I19.1" temp_strand="+" temp_description="C12HBa0146I19.1  AC209588.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0146I19 upload_account_name:italy">
        <position start="119065" stop="119956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119365" g_stop="119656" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0146I19.1" gen_strand="+" ref_id="SGN-U336817" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0146I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119365" e_stop="119656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTTGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9662" PGL_stop="10603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9662" e_stop="9858"/>
            <exon e_start="10109" e_stop="10603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.658" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9662" e_stop="9858" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.658" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9859" i_stop="10108" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="10109" e_stop="10603" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9662" stop="9858"/>
              <exon start="10109" stop="10603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACAAAAGATGTTGACACTATTAACCATTCTTTTCTTAGCATTTCTCTTCATTATTGGCCTTATCACAACAATTTTCAATTTCCCAACTAACAAGTTCCACTCTTTAATTCAATCAATCTCACTAGAATCTCAACCTCTCCAAGAAAGGACCATAACAACACCCCCATCATCATCATCAACAACAACATCCATG : ATGGAGTGGAACAAGAAGGTGAAATGAATGAAGAAGAAGTTGCTAATAAAGAGAGAGATCTTAAAGAAGCTTTTGATGTGTTTGATCATGATAAAGATGGATTAATATCAGAAGAAGAATTGAGTAAGATACTTTCATCTTTAGGAATGAAAGAAGGTAAGAAATTGGATCATTGTAAAGAAATGATAAAGAAAGTTGATGTTGATGGTGATGGAATGGTGAACTTTGATGAGTTCAAGAAGATGATGAAAGCTTGTGGAACTCTTGTTCCATTTTCTTAAAGCAACCATATACCAATTGAAGAAAATTAACCTTTTGTTACAAGCTATACAAATTACTAGTATTCTTTTTGTAATCTCTCTCTTGTTATAAACTCGAGATGATAAACTCGTTCTTTCTATTCTTCTCCATTTTAATACTGAACTTAGTTCGCTTGATGCAGAACTTGGATTTGTACTGCCTAATGTTATGATGATATACTAGTATTCATTCATT</gDNA_template>
            <first_frame> Q  N  K  R  C  *  H  Y  *  P  F  F  S  *  H  F  S  S  L  L  A  L  S  Q  Q  F  S  I  S  Q  L  T  S  S  T  L  *  F  N  Q  S  H  *  N  L  N  L  S  K  K  G  P  *  Q  H  P  H  H  H  H  Q  Q  Q  H  P  * :   W  S  G  T  R  R  *  N  E  *  R  R  S  C  *  *  R  E  R  S  *  R  S  F  *  C  V  *  S  *  *  R  W  I  N  I  R  R  R  I  E  *  D  T  F  I  F  R  N  E  R  R  *  E  I  G  S  L  *  R  N  D  K  E  S  *  C  *  W  *  W  N  G  E  L  *  *  V  Q  E  D  D  E  S  L  W  N  S  C  S  I  F  L  K  Q  P  Y  T  N  *  R  K  L  T  F  C  Y  K  L  Y  K  L  L  V  F  F  L  *  S  L  S  C  Y  K  L  E  M  I  N  S  F  F  L  F  F  S  I  L  I  L  N  L  V  R  L  M  Q  N  L  D  L  Y  C  L  M  L  *  *  Y  T  S  I  H  S   </first_frame>
            <second_frame>  K  T  K  D  V  D  T  I  N  H  S  F  L  S  I  S  L  H  Y  W  P  Y  H  N  N  F  Q  F  P  N  *  Q  V  P  L  F  N  S  I  N  L  T  R  I  S  T  S  P  R  K  D  H  N  N  T  P  I  I  I  I  N  N  N  I  H   : D  G  V  E  Q  E  G  E  M  N  E  E  E  V  A  N  K  E  R  D  L  K  E  A  F  D  V  F  D  H  D  K  D  G  L  I  S  E  E  E  L  S  K  I  L  S  S  L  G  M  K  E  G  K  K  L  D  H  C  K  E  M  I  K  K  V  D  V  D  G  D  G  M  V  N  F  D  E  F  K  K  M  M  K  A  C  G  T  L  V  P  F  S  *  S  N  H  I  P  I  E  E  N  *  P  F  V  T  S  Y  T  N  Y  *  Y  S  F  C  N  L  S  L  V  I  N  S  R  *  *  T  R  S  F  Y  S  S  P  F  *  Y  *  T  *  F  A  *  C  R  T  W  I  C  T  A  *  C  Y  D  D  I  L  V  F  I  H  </second_frame>
            <third_frame>   K  Q  K  M  L  T  L  L  T  I  L  F  L  A  F  L  F  I  I  G  L  I  T  T  I  F  N  F  P  T  N  K  F  H  S  L  I  Q  S  I  S  L  E  S  Q  P  L  Q  E  R  T  I  T  T  P  P  S  S  S  S  T  T  T  S  M  :  M  E  W  N  K  K  V  K  *  M  K  K  K  L  L  I  K  R  E  I  L  K  K  L  L  M  C  L  I  M  I  K  M  D  *  Y  Q  K  K  N  *  V  R  Y  F  H  L  *  E  *  K  K  V  R  N  W  I  I  V  K  K  *  *  R  K  L  M  L  M  V  M  E  W  *  T  L  M  S  S  R  R  *  *  K  L  V  E  L  L  F  H  F  L  K  A  T  I  Y  Q  L  K  K  I  N  L  L  L  Q  A  I  Q  I  T  S  I  L  F  V  I  S  L  L  L  *  T  R  D  D  K  L  V  L  S  I  L  L  H  F  N  T  E  L  S  S  L  D  A  E  L  G  F  V  L  P  N  V  M  M  I  Y  *  Y  S  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9756" stop="9858"/>
                    <exon start="10109" stop="10389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVPLFNSINLTRISTSPRKDHNNTPIIIINNNIHDGVEQEGEMNEEEVANKERDLKEAFDVFDHDKDGLISEEELSKILSSLGMKEGKKLDHCKEMIKKVDVDGDGMVNFDEFKKMMKACGTLVPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17939" PGL_stop="10900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17939" e_stop="17487"/>
            <exon e_start="14445" e_stop="14292"/>
            <exon e_start="12470" e_stop="12253"/>
            <exon e_start="11667" e_stop="11494"/>
            <exon e_start="11283" e_stop="10900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.998"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17939" e_stop="17487" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="17486" i_stop="14446" i_length="3041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14445" e_stop="14292" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14291" i_stop="12471" i_length="1821"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12470" e_stop="12253" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.984">
            <gDNA_intron_boundary i_start="12252" i_stop="11668" i_length="585"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11667" e_stop="11494" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="11493" i_stop="11284" i_length="210"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="11283" e_stop="10900" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17939" stop="17487"/>
              <exon start="14445" stop="14292"/>
              <exon start="12470" stop="12253"/>
              <exon start="11667" stop="11494"/>
              <exon start="11283" stop="10900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTGTAATCTCTCTCGTGAAGAGAGAGAATTTAAGAGAAAAATTATTATTTTTTTTCTTTTTATTTACAAAATATTATTCATAGATTCATAGCAAATTTTAGCAATTCGACCATATTTTTTTTTCTTAATTTTTTTGATTTTTTAATTTTTTTTTGAATTTATAAATCTGCATGATCGGAACGGGAAAAGAGGAACTTTTGATCGGAGAAATCTGAAAGAGGAATTTTTTTCCGGCACATCATGTCTGCTATATTGTGCGGGAAGAGATCGAATTTGTTTGAGGATTTTCAGTCGTCGTCGTCTGCGTCAACGCCGGTTTCGAAGAGGATTCGCCGTAATTTTTCTCCGGCGAGGTCTAATTCTGATTCCGATCGTGTTTTGTGTGGTAATTTGATTGCATCGTCGGCACTCGATCATCTTCTCATGATTTTCTCTGACACGGACAAGCAG : TTGGTTGAGAGAGCACTTGAAGAATCCGGTGATGATCTAGATTCTGCTATCAAACGCCTGAATGAGCTCTGCTTGGGATCTGGTGATAATCTGAGGCCTGTGGCAGGAAGCTCTGGTGCTACACATGAGTTCAGCAGCCAGGTTTTTCCTCAAG : GTGTGGCTACAACTAATGGTGAGACCCCATCTGCAGAGGATTTATCTTCTGCAGAAGTGGTGCATTTGCAGGGTACAGAATGGGTGGATCTTTTTGTTGGAGAGATGATGAGTGCATCAAACATAGATGATGCTAAAGCGCGTGCTTCACGAGCTCTGGAGGCTTTTGAGAAGACCATATGTGCTCGTGCAACAGAGGCAGCCTGCCGTTTCCAGAAG : GAGAATATGATGCTCAAGCAGCAGTTAGAAGCTCTTGTACAAGAGAATGCTATTTTCAAGCGAGCAGTTGCCATCCAGCATGAGCGTCAAAAGGAATTCGAGAATAGAGGGAACGAGTTGAATCAGCTGAAGCAGTCGGTGGCTCAGTACCAGGAGCAGCTTAGAACCCTTGAG : GTCAATAACTATGCTCTCACGATGCACCTCAAGCAAGCTCAACAAAGCAACAACTCCATTCCAGGGCGTTTCAACCCCGATGTCTTTTAGTATGTGTCATGTCCCTATTGGCTGTGTAACATACATAGGTAGCAACAGTAGTATCCTATCGTCACAGTAGCAGCAAGTGTTTCCTAGAGATGAATGACGATATTAAGCTAGAACTTCTGTCTATTGATCAAAGTGCCCTTCTGCAGTTACTAGACAAAGGGTACTTTGTTCTGTTCATACAAGTTTTTATTTGTTTTTCTGCTGTTGTTTCAATTAGAGTATCCAAAGTTCATACAGTTCTATTCTTCTTCTTCTGCTTTTAAGAAGATGTTCAACACATGATTGTTATGCTTT</gDNA_template>
            <first_frame> K  L  *  S  L  S  *  R  E  R  I  *  E  K  N  Y  Y  F  F  S  F  Y  L  Q  N  I  I  H  R  F  I  A  N  F  S  N  S  T  I  F  F  F  L  N  F  F  D  F  L  I  F  F  *  I  Y  K  S  A  *  S  E  R  E  K  R  N  F  *  S  E  K  S  E  R  G  I  F  F  R  H  I  M  S  A  I  L  C  G  K  R  S  N  L  F  E  D  F  Q  S  S  S  S  A  S  T  P  V  S  K  R  I  R  R  N  F  S  P  A  R  S  N  S  D  S  D  R  V  L  C  G  N  L  I  A  S  S  A  L  D  H  L  L  M  I  F  S  D  T  D  K  Q  :  L  V  E  R  A  L  E  E  S  G  D  D  L  D  S  A  I  K  R  L  N  E  L  C  L  G  S  G  D  N  L  R  P  V  A  G  S  S  G  A  T  H  E  F  S  S  Q  V  F  P  Q   : G  V  A  T  T  N  G  E  T  P  S  A  E  D  L  S  S  A  E  V  V  H  L  Q  G  T  E  W  V  D  L  F  V  G  E  M  M  S  A  S  N  I  D  D  A  K  A  R  A  S  R  A  L  E  A  F  E  K  T  I  C  A  R  A  T  E  A  A  C  R  F  Q  K  :  E  N  M  M  L  K  Q  Q  L  E  A  L  V  Q  E  N  A  I  F  K  R  A  V  A  I  Q  H  E  R  Q  K  E  F  E  N  R  G  N  E  L  N  Q  L  K  Q  S  V  A  Q  Y  Q  E  Q  L  R  T  L  E  :  V  N  N  Y  A  L  T  M  H  L  K  Q  A  Q  Q  S  N  N  S  I  P  G  R  F  N  P  D  V  F  *  Y  V  S  C  P  Y  W  L  C  N  I  H  R  *  Q  Q  *  Y  P  I  V  T  V  A  A  S  V  S  *  R  *  M  T  I  L  S  *  N  F  C  L  L  I  K  V  P  F  C  S  Y  *  T  K  G  T  L  F  C  S  Y  K  F  L  F  V  F  L  L  L  F  Q  L  E  Y  P  K  F  I  Q  F  Y  S  S  S  S  A  F  K  K  M  F  N  T  *  L  L  C  F </first_frame>
            <second_frame>  S  C  N  L  S  R  E  E  R  E  F  K  R  K  I  I  I  F  F  L  F  I  Y  K  I  L  F  I  D  S  *  Q  I  L  A  I  R  P  Y  F  F  F  L  I  F  L  I  F  *  F  F  F  E  F  I  N  L  H  D  R  N  G  K  R  G  T  F  D  R  R  N  L  K  E  E  F  F  S  G  T  S  C  L  L  Y  C  A  G  R  D  R  I  C  L  R  I  F  S  R  R  R  L  R  Q  R  R  F  R  R  G  F  A  V  I  F  L  R  R  G  L  I  L  I  P  I  V  F  C  V  V  I  *  L  H  R  R  H  S  I  I  F  S  *  F  S  L  T  R  T  S  S :   W  L  R  E  H  L  K  N  P  V  M  I  *  I  L  L  S  N  A  *  M  S  S  A  W  D  L  V  I  I  *  G  L  W  Q  E  A  L  V  L  H  M  S  S  A  A  R  F  F  L  K  :  V  W  L  Q  L  M  V  R  P  H  L  Q  R  I  Y  L  L  Q  K  W  C  I  C  R  V  Q  N  G  W  I  F  L  L  E  R  *  *  V  H  Q  T  *  M  M  L  K  R  V  L  H  E  L  W  R  L  L  R  R  P  Y  V  L  V  Q  Q  R  Q  P  A  V  S  R  R :   R  I  *  C  S  S  S  S  *  K  L  L  Y  K  R  M  L  F  S  S  E  Q  L  P  S  S  M  S  V  K  R  N  S  R  I  E  G  T  S  *  I  S  *  S  S  R  W  L  S  T  R  S  S  L  E  P  L  R :   S  I  T  M  L  S  R  C  T  S  S  K  L  N  K  A  T  T  P  F  Q  G  V  S  T  P  M  S  F  S  M  C  H  V  P  I  G  C  V  T  Y  I  G  S  N  S  S  I  L  S  S  Q  *  Q  Q  V  F  P  R  D  E  *  R  Y  *  A  R  T  S  V  Y  *  S  K  C  P  S  A  V  T  R  Q  R  V  L  C  S  V  H  T  S  F  Y  L  F  F  C  C  C  F  N  *  S  I  Q  S  S  Y  S  S  I  L  L  L  L  L  L  R  R  C  S  T  H  D  C  Y  A   </second_frame>
            <third_frame>   A  V  I  S  L  V  K  R  E  N  L  R  E  K  L  L  F  F  F  F  L  F  T  K  Y  Y  S  *  I  H  S  K  F  *  Q  F  D  H  I  F  F  S  *  F  F  *  F  F  N  F  F  L  N  L  *  I  C  M  I  G  T  G  K  E  E  L  L  I  G  E  I  *  K  R  N  F  F  P  A  H  H  V  C  Y  I  V  R  E  E  I  E  F  V  *  G  F  S  V  V  V  V  C  V  N  A  G  F  E  E  D  S  P  *  F  F  S  G  E  V  *  F  *  F  R  S  C  F  V  W  *  F  D  C  I  V  G  T  R  S  S  S  H  D  F  L  *  H  G  Q  A   : V  G  *  E  S  T  *  R  I  R  *  *  S  R  F  C  Y  Q  T  P  E  *  A  L  L  G  I  W  *  *  S  E  A  C  G  R  K  L  W  C  Y  T  *  V  Q  Q  P  G  F  S  S  R :   C  G  Y  N  *  W  *  D  P  I  C  R  G  F  I  F  C  R  S  G  A  F  A  G  Y  R  M  G  G  S  F  C  W  R  D  D  E  C  I  K  H  R  *  C  *  S  A  C  F  T  S  S  G  G  F  *  E  D  H  M  C  S  C  N  R  G  S  L  P  F  P  E   : G  E  Y  D  A  Q  A  A  V  R  S  S  C  T  R  E  C  Y  F  Q  A  S  S  C  H  P  A  *  A  S  K  G  I  R  E  *  R  E  R  V  E  S  A  E  A  V  G  G  S  V  P  G  A  A  *  N  P  *   : G  Q  *  L  C  S  H  D  A  P  Q  A  S  S  T  K  Q  Q  L  H  S  R  A  F  Q  P  R  C  L  L  V  C  V  M  S  L  L  A  V  *  H  T  *  V  A  T  V  V  S  Y  R  H  S  S  S  K  C  F  L  E  M  N  D  D  I  K  L  E  L  L  S  I  D  Q  S  A  L  L  Q  L  L  D  K  G  Y  F  V  L  F  I  Q  V  F  I  C  F  S  A  V  V  S  I  R  V  S  K  V  H  T  V  L  F  F  F  F  C  F  *  E  D  V  Q  H  M  I  V  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17735" stop="17487"/>
                    <exon start="14445" stop="14292"/>
                    <exon start="12470" stop="12253"/>
                    <exon start="11667" stop="11494"/>
                    <exon start="11283" stop="11194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKSERGIFFRHIMSAILCGKRSNLFEDFQSSSSASTPVSKRIRRNFSPARSNSDSDRVLCGNLIASSALDHLLMIFSDTDKQLVERALEESGDDLDSAIKRLNELCLGSGDNLRPVAGSSGATHEFSSQVFPQGVATTNGETPSAEDLSSAEVVHLQGTEWVDLFVGEMMSASNIDDAKARASRALEAFEKTICARATEAACRFQKENMMLKQQLEALVQENAIFKRAVAIQHERQKEFENRGNELNQLKQSVAQYQEQLRTLEVNNYALTMHLKQAQQSNNSIPGRFNPDVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11155" stop="10931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATVVSYRHSSSKCFLEMNDDIKLELLSIDQSALLQLLDKGYFVLFIQVFICFSAVVSIRVSKVHTVLFFFFCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29775" PGL_stop="30929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29775" e_stop="29826"/>
            <exon e_start="29928" e_stop="30035"/>
            <exon e_start="30530" e_stop="30929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.995" e_score="0.981"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29775" e_stop="29826" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29827" i_stop="29927" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="29928" e_stop="30035" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.833" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30036" i_stop="30529" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="30530" e_stop="30929" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29775" stop="29826"/>
              <exon start="29928" stop="30035"/>
              <exon start="30530" stop="30929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGGATTCCATATAAAGGACAAAGCTCGAGTGCAAGGTTGTCTGAAAAAG : ATAAGAGTCTTTACACTATACGAGCAGTTCCATTTTCGGATGTTAGATCAATTCGACGACACACTCCGACCCTGGGGTGGCAATATGTTATTGTAGTTTTGTCATCAG : GACTAGCATTTCCTCCGCTTTATTTCTACAATGGCGGTGTGCGGGAGTTTCTTGCAACAATTAAGCAGCATGCTTATCTTGTGAGGTGAACTTAATTTGTTCTCTTATGCATCGTCTTCGTCATTGTCATGACTAGGCAATTCAACTAATAAATCAGATTCATCTCTTCCTTTTTCTTTTTGGGCAGAATTCATAAGATGAGAATAGAAAGTAAAACTAGATAGTCCGCTAATGAATGATACTGATCTCAGTAAAAAAATCAAAAGCTATGTCGTATAAAAGATCTAAAAAGTTGCTCCTTTCTTTTGGTGACTGAGAGATAGTTTCGGAAAAAATGTAAGGACGTGGTACATGGAAGGTTTACCTCTGGCTGACATTCAATGGTAATCCAGCTGAATTG</gDNA_template>
            <first_frame> T  W  I  P  Y  K  G  Q  S  S  S  A  R  L  S  E  K   : D  K  S  L  Y  T  I  R  A  V  P  F  S  D  V  R  S  I  R  R  H  T  P  T  L  G  W  Q  Y  V  I  V  V  L  S  S   : G  L  A  F  P  P  L  Y  F  Y  N  G  G  V  R  E  F  L  A  T  I  K  Q  H  A  Y  L  V  R  *  T  *  F  V  L  L  C  I  V  F  V  I  V  M  T  R  Q  F  N  *  *  I  R  F  I  S  S  F  F  F  L  G  R  I  H  K  M  R  I  E  S  K  T  R  *  S  A  N  E  *  Y  *  S  Q  *  K  N  Q  K  L  C  R  I  K  D  L  K  S  C  S  F  L  L  V  T  E  R  *  F  R  K  K  C  K  D  V  V  H  G  R  F  T  S  G  *  H  S  M  V  I  Q  L  N   </first_frame>
            <second_frame>  L  G  F  H  I  K  D  K  A  R  V  Q  G  C  L  K  K  :  I  R  V  F  T  L  Y  E  Q  F  H  F  R  M  L  D  Q  F  D  D  T  L  R  P  W  G  G  N  M  L  L  *  F  C  H  Q  :  D  *  H  F  L  R  F  I  S  T  M  A  V  C  G  S  F  L  Q  Q  L  S  S  M  L  I  L  *  G  E  L  N  L  F  S  Y  A  S  S  S  S  L  S  *  L  G  N  S  T  N  K  S  D  S  S  L  P  F  S  F  W  A  E  F  I  R  *  E  *  K  V  K  L  D  S  P  L  M  N  D  T  D  L  S  K  K  I  K  S  Y  V  V  *  K  I  *  K  V  A  P  F  F  W  *  L  R  D  S  F  G  K  N  V  R  T  W  Y  M  E  G  L  P  L  A  D  I  Q  W  *  S  S  *  I  </second_frame>
            <third_frame>   L  D  S  I  *  R  T  K  L  E  C  K  V  V  *  K  R :   *  E  S  L  H  Y  T  S  S  S  I  F  G  C  *  I  N  S  T  T  H  S  D  P  G  V  A  I  C  Y  C  S  F  V  I  R :   T  S  I  S  S  A  L  F  L  Q  W  R  C  A  G  V  S  C  N  N  *  A  A  C  L  S  C  E  V  N  L  I  C  S  L  M  H  R  L  R  H  C  H  D  *  A  I  Q  L  I  N  Q  I  H  L  F  L  F  L  F  G  Q  N  S  *  D  E  N  R  K  *  N  *  I  V  R  *  *  M  I  L  I  S  V  K  K  S  K  A  M  S  Y  K  R  S  K  K  L  L  L  S  F  G  D  *  E  I  V  S  E  K  M  *  G  R  G  T  W  K  V  Y  L  W  L  T  F  N  G  N  P  A  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29775" stop="29826"/>
                    <exon start="29928" stop="30035"/>
                    <exon start="30530" stop="30618"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWIPYKGQSSSARLSEKDKSLYTIRAVPFSDVRSIRRHTPTLGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAYLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="31033" PGL_stop="31693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31033" e_stop="31237"/>
            <exon e_start="31348" e_stop="31693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31033" e_stop="31237" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.853">
            <gDNA_intron_boundary i_start="31238" i_stop="31347" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31348" e_stop="31693" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31033" stop="31237"/>
              <exon start="31348" stop="31693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTATATCTTATCATACTACTAGAAATTTGGGATCTCAATGTTTTCTCGTTCCAGTATCTCTTGTTGCAATGAACTAGTAGTGGGAGAGATAACTTGATTTTAGGCTGAAGGCCTTTCCATTCTTACTGGTGAGTTATATTTTTCCAGATCAGCCGATGATGCTAATGTATTTCTTGTCAACGACTTTCAAGATCCACTCCAG : AGAACTCTCTCCTCCTTGGAACTTCCTAGGGCTGTTTCTGTAACTAACAGTCCATCATCAGCTGCACCTAGCGAATCCCCATCTAGCTGGACAGAGGGGGAAACTTTTGATAGAAATTCTGCACTTGCTCAACAAAATGCCAGGCAAAGACAAAAACATAATGATCCTGCTCGAGATTTGTCAATTCAAGTACTAGAGAAATTTTCTCTTGTGACCAGATTTGCTCGTGAAACGACATCACAACTTTTTGGTGAAGCTCAGGGAGATAGTTTTGTCTCTAATGACAGGAGGAATCACGATGGAAAAACATATGATTATCCTCGCATTGCCGAATCTAATGATGCTC</gDNA_template>
            <first_frame> K  V  Y  L  I  I  L  L  E  I  W  D  L  N  V  F  S  F  Q  Y  L  L  L  Q  *  T  S  S  G  R  D  N  L  I  L  G  *  R  P  F  H  S  Y  W  *  V  I  F  F  Q  I  S  R  *  C  *  C  I  S  C  Q  R  L  S  R  S  T  P   : E  N  S  L  L  L  G  T  S  *  G  C  F  C  N  *  Q  S  I  I  S  C  T  *  R  I  P  I  *  L  D  R  G  G  N  F  *  *  K  F  C  T  C  S  T  K  C  Q  A  K  T  K  T  *  *  S  C  S  R  F  V  N  S  S  T  R  E  I  F  S  C  D  Q  I  C  S  *  N  D  I  T  T  F  W  *  S  S  G  R  *  F  C  L  *  *  Q  E  E  S  R  W  K  N  I  *  L  S  S  H  C  R  I  *  *  C   </first_frame>
            <second_frame>  K  Y  I  L  S  Y  Y  *  K  F  G  I  S  M  F  S  R  S  S  I  S  C  C  N  E  L  V  V  G  E  I  T  *  F  *  A  E  G  L  S  I  L  T  G  E  L  Y  F  S  R  S  A  D  D  A  N  V  F  L  V  N  D  F  Q  D  P  L  Q  :  R  T  L  S  S  L  E  L  P  R  A  V  S  V  T  N  S  P  S  S  A  A  P  S  E  S  P  S  S  W  T  E  G  E  T  F  D  R  N  S  A  L  A  Q  Q  N  A  R  Q  R  Q  K  H  N  D  P  A  R  D  L  S  I  Q  V  L  E  K  F  S  L  V  T  R  F  A  R  E  T  T  S  Q  L  F  G  E  A  Q  G  D  S  F  V  S  N  D  R  R  N  H  D  G  K  T  Y  D  Y  P  R  I  A  E  S  N  D  A  </second_frame>
            <third_frame>   S  I  S  Y  H  T  T  R  N  L  G  S  Q  C  F  L  V  P  V  S  L  V  A  M  N  *  *  W  E  R  *  L  D  F  R  L  K  A  F  P  F  L  L  V  S  Y  I  F  P  D  Q  P  M  M  L  M  Y  F  L  S  T  T  F  K  I  H  S  R :   E  L  S  P  P  W  N  F  L  G  L  F  L  *  L  T  V  H  H  Q  L  H  L  A  N  P  H  L  A  G  Q  R  G  K  L  L  I  E  I  L  H  L  L  N  K  M  P  G  K  D  K  N  I  M  I  L  L  E  I  C  Q  F  K  Y  *  R  N  F  L  L  *  P  D  L  L  V  K  R  H  H  N  F  L  V  K  L  R  E  I  V  L  S  L  M  T  G  G  I  T  M  E  K  H  M  I  I  L  A  L  P  N  L  M  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31139" stop="31237"/>
                    <exon start="31348" stop="31692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEGLSILTGELYFSRSADDANVFLVNDFQDPLQRTLSSLELPRAVSVTNSPSSAAPSESPSSWTEGETFDRNSALAQQNARQRQKHNDPARDLSIQVLEKFSLVTRFARETTSQLFGEAQGDSFVSNDRRNHDGKTYDYPRIAESNDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32881" PGL_stop="39286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32881" e_stop="32933"/>
            <exon e_start="34404" e_stop="34502"/>
            <exon e_start="34580" e_stop="34690"/>
            <exon e_start="35026" e_stop="35097"/>
            <exon e_start="35229" e_stop="35345"/>
            <exon e_start="35723" e_stop="35872"/>
            <exon e_start="36781" e_stop="36881"/>
            <exon e_start="37416" e_stop="37872"/>
            <exon e_start="39262" e_stop="39286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32881" e_stop="32933" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32934" i_stop="34403" i_length="1470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34404" e_stop="34502" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="34503" i_stop="34579" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34580" e_stop="34690" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.611" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34691" i_stop="35025" i_length="335"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35026" e_stop="35097" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.950">
            <gDNA_intron_boundary i_start="35098" i_stop="35228" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35229" e_stop="35345" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35346" i_stop="35722" i_length="377"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35723" e_stop="35872" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35873" i_stop="36780" i_length="908"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36781" e_stop="36881" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36882" i_stop="37415" i_length="534"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37416" e_stop="37872" e_length="457"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37873" i_stop="39261" i_length="1389"/>
          </intron>
          <exon e_serial="9" e_score="0.880">
            <gDNA_exon_boundary e_start="39262" e_stop="39286" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32881" stop="32933"/>
              <exon start="34404" stop="34502"/>
              <exon start="34580" stop="34690"/>
              <exon start="35026" stop="35097"/>
              <exon start="35229" stop="35345"/>
              <exon start="35723" stop="35872"/>
              <exon start="36781" stop="36881"/>
              <exon start="37416" stop="37872"/>
              <exon start="39262" stop="39286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34489" stop="34502"/>
              <exon start="34580" stop="34690"/>
              <exon start="35026" stop="35097"/>
              <exon start="35229" stop="35345"/>
              <exon start="35723" stop="35769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGTCACTAGTATGGGGAAAACCACGGCAACCCCCCTTGGGAACAGAAGAG : TGGTCTGCTTTCCTGGACACCGAAGGGAGAGTCACAGACTCAGAAGCAGTAAGAAAGAGAATATTTTATGGTGGAGTGGAACCAGATCTACGTAAAGAG : GTGTGGCAATTTCTGTTGGGATACCATTCATATGATTCAACTTATGCAGAGAGGGAATACCTTGTGTCCGTCAAAAAGTCAGAATATGAAACGATAAAAAACCAATGGAAG : AGCATCTCTAAGGAGCAGGCAAAAAGATTTACAAAATTCCGAGAGAGGAGAGGCCTCATTGAAAAAGATGTG : GTGAGGACTGATAGGTCAGTTTCATTCTATGAAGAGGATGACAACCCAAACATTAAATGTTTGCGTGATATACTGCTGACATACTCATTCTACAACTTTGATTTGGGTTACTGTCAG : GGTATGAGCGATCTCCTTTCACCAATATTGTTTATTATGGGAGATGAATCAGAAACATTTTGGTGCTTTGTGGCGTTGATGGAACGACTTGGACCAAACTTTAACCGTGACCAAAATGGAATGCACTCTCAGCTTTTTGCATTATCAAAG : TTGGTCGAGTTGTTGGACATCCCTCTGCATAATTACTTCAAACAGAAGGACTGTTTGAATTATTTCTTCTGCTTCCGATGGGTTCTTATTCAATTCAAAAG : GGAGTTTGAATTTGAACAAACGATGCGATTGTGGGAGGTATTATGGACGCATTATGGGAGCGAGCACCTTCATCTGTATGTGTGTGTCGCGATTCTGAAAAGACATCGCAGCAAAATAATAGGAGAGGGGATGGATTTCGACACACTACTGAAATTTATCAACGAGCTGAGTGGTCATATTGACCTAGATGCTATCCTCAGGGATGCAGAGGCTCTGTGTATATGTGCCGGCGAAAATGGTGAATCCTGCATCCCTCCTGGAACTCCACCTTCATTACCAGTTGACGATGCTTCAATGTATTACCAACAAGATGATGATGATCATATGTTATAATATAAGTAGGAAGATCACCATTTTGTCCCTCTACTACAAGTAAAATCTGATTAAATATAAATATTTTAATTACATAATGATAGACTTTGAAGTTCTTTTAATAATTAAATTATCATTTTCTTG : ATAAAAAATAAAAAGAAAAAAAAAT</gDNA_template>
            <first_frame> N  C  H  *  Y  G  E  N  H  G  N  P  P  W  E  Q  K  S :   G  L  L  S  W  T  P  K  G  E  S  Q  T  Q  K  Q  *  E  R  E  Y  F  M  V  E  W  N  Q  I  Y  V  K  R :   C  G  N  F  C  W  D  T  I  H  M  I  Q  L  M  Q  R  G  N  T  L  C  P  S  K  S  Q  N  M  K  R  *  K  T  N  G  R :   A  S  L  R  S  R  Q  K  D  L  Q  N  S  E  R  G  E  A  S  L  K  K  M  W :   *  G  L  I  G  Q  F  H  S  M  K  R  M  T  T  Q  T  L  N  V  C  V  I  Y  C  *  H  T  H  S  T  T  L  I  W  V  T  V  R :   V  *  A  I  S  F  H  Q  Y  C  L  L  W  E  M  N  Q  K  H  F  G  A  L  W  R  *  W  N  D  L  D  Q  T  L  T  V  T  K  M  E  C  T  L  S  F  L  H  Y  Q  S :   W  S  S  C  W  T  S  L  C  I  I  T  S  N  R  R  T  V  *  I  I  S  S  A  S  D  G  F  L  F  N  S  K   : G  S  L  N  L  N  K  R  C  D  C  G  R  Y  Y  G  R  I  M  G  A  S  T  F  I  C  M  C  V  S  R  F  *  K  D  I  A  A  K  *  *  E  R  G  W  I  S  T  H  Y  *  N  L  S  T  S  *  V  V  I  L  T  *  M  L  S  S  G  M  Q  R  L  C  V  Y  V  P  A  K  M  V  N  P  A  S  L  L  E  L  H  L  H  Y  Q  L  T  M  L  Q  C  I  T  N  K  M  M  M  I  I  C  Y  N  I  S  R  K  I  T  I  L  S  L  Y  Y  K  *  N  L  I  K  Y  K  Y  F  N  Y  I  M  I  D  F  E  V  L  L  I  I  K  L  S  F  S  * :   *  K  I  K  R  K  K  N </first_frame>
            <second_frame>  T  V  T  S  M  G  K  T  T  A  T  P  L  G  N  R  R   : V  V  C  F  P  G  H  R  R  E  S  H  R  L  R  S  S  K  K  E  N  I  L  W  W  S  G  T  R  S  T  *  R   : G  V  A  I  S  V  G  I  P  F  I  *  F  N  L  C  R  E  G  I  P  C  V  R  Q  K  V  R  I  *  N  D  K  K  P  M  E   : E  H  L  *  G  A  G  K  K  I  Y  K  I  P  R  E  E  R  P  H  *  K  R  C   : G  E  D  *  *  V  S  F  I  L  *  R  G  *  Q  P  K  H  *  M  F  A  *  Y  T  A  D  I  L  I  L  Q  L  *  F  G  L  L  S   : G  Y  E  R  S  P  F  T  N  I  V  Y  Y  G  R  *  I  R  N  I  L  V  L  C  G  V  D  G  T  T  W  T  K  L  *  P  *  P  K  W  N  A  L  S  A  F  C  I  I  K   : V  G  R  V  V  G  H  P  S  A  *  L  L  Q  T  E  G  L  F  E  L  F  L  L  L  P  M  G  S  Y  S  I  Q  K  :  G  V  *  I  *  T  N  D  A  I  V  G  G  I  M  D  A  L  W  E  R  A  P  S  S  V  C  V  C  R  D  S  E  K  T  S  Q  Q  N  N  R  R  G  D  G  F  R  H  T  T  E  I  Y  Q  R  A  E  W  S  Y  *  P  R  C  Y  P  Q  G  C  R  G  S  V  Y  M  C  R  R  K  W  *  I  L  H  P  S  W  N  S  T  F  I  T  S  *  R  C  F  N  V  L  P  T  R  *  *  *  S  Y  V  I  I  *  V  G  R  S  P  F  C  P  S  T  T  S  K  I  *  L  N  I  N  I  L  I  T  *  *  *  T  L  K  F  F  *  *  L  N  Y  H  F  L   : D  K  K  *  K  E  K  K   </second_frame>
            <third_frame>   L  S  L  V  W  G  K  P  R  Q  P  P  L  G  T  E  E  :  W  S  A  F  L  D  T  E  G  R  V  T  D  S  E  A  V  R  K  R  I  F  Y  G  G  V  E  P  D  L  R  K  E  :  V  W  Q  F  L  L  G  Y  H  S  Y  D  S  T  Y  A  E  R  E  Y  L  V  S  V  K  K  S  E  Y  E  T  I  K  N  Q  W  K  :  S  I  S  K  E  Q  A  K  R  F  T  K  F  R  E  R  R  G  L  I  E  K  D  V  :  V  R  T  D  R  S  V  S  F  Y  E  E  D  D  N  P  N  I  K  C  L  R  D  I  L  L  T  Y  S  F  Y  N  F  D  L  G  Y  C  Q  :  G  M  S  D  L  L  S  P  I  L  F  I  M  G  D  E  S  E  T  F  W  C  F  V  A  L  M  E  R  L  G  P  N  F  N  R  D  Q  N  G  M  H  S  Q  L  F  A  L  S  K  :  L  V  E  L  L  D  I  P  L  H  N  Y  F  K  Q  K  D  C  L  N  Y  F  F  C  F  R  W  V  L  I  Q  F  K  R :   E  F  E  F  E  Q  T  M  R  L  W  E  V  L  W  T  H  Y  G  S  E  H  L  H  L  Y  V  C  V  A  I  L  K  R  H  R  S  K  I  I  G  E  G  M  D  F  D  T  L  L  K  F  I  N  E  L  S  G  H  I  D  L  D  A  I  L  R  D  A  E  A  L  C  I  C  A  G  E  N  G  E  S  C  I  P  P  G  T  P  P  S  L  P  V  D  D  A  S  M  Y  Y  Q  Q  D  D  D  D  H  M  L  *  Y  K  *  E  D  H  H  F  V  P  L  L  Q  V  K  S  D  *  I  *  I  F  *  L  H  N  D  R  L  *  S  S  F  N  N  *  I  I  I  F  L  :  I  K  N  K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32883" stop="32933"/>
                    <exon start="34404" stop="34502"/>
                    <exon start="34580" stop="34690"/>
                    <exon start="35026" stop="35097"/>
                    <exon start="35229" stop="35345"/>
                    <exon start="35723" stop="35872"/>
                    <exon start="36781" stop="36881"/>
                    <exon start="37416" stop="37749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLVWGKPRQPPLGTEEWSAFLDTEGRVTDSEAVRKRIFYGGVEPDLRKEVWQFLLGYHSYDSTYAEREYLVSVKKSEYETIKNQWKSISKEQAKRFTKFRERRGLIEKDVVRTDRSVSFYEEDDNPNIKCLRDILLTYSFYNFDLGYCQGMSDLLSPILFIMGDESETFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDIPLHNYFKQKDCLNYFFCFRWVLIQFKREFEFEQTMRLWEVLWTHYGSEHLHLYVCVAILKRHRSKIIGEGMDFDTLLKFINELSGHIDLDAILRDAEALCICAGENGESCIPPGTPPSLPVDDASMYYQQDDDDHML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39287" PGL_stop="41453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39287" e_stop="39594"/>
            <exon e_start="40333" e_stop="40472"/>
            <exon e_start="40554" e_stop="40626"/>
            <exon e_start="41157" e_stop="41453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39287" e_stop="39594" e_length="308"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.910">
            <gDNA_intron_boundary i_start="39595" i_stop="40332" i_length="738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40333" e_stop="40472" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="40473" i_stop="40553" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40554" e_stop="40626" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40627" i_stop="41156" i_length="530"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="41157" e_stop="41453" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39287" stop="39594"/>
              <exon start="40333" stop="40472"/>
              <exon start="40554" stop="40626"/>
              <exon start="41157" stop="41453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAACTGTGTGTCTCTCAAATCCTAAATCTTTTCTTCCATCATCTTCATTTTCCACTAGAAAACAAATAATTTTGTGCAAAGCAGAGAATAATGTATGTAATTTTAGTTCAATTATTAGCAAGAGAAGTCTATCAATTAGCCTTGCATCAAGTTTGTTGCTTTCTTTAACTGGAAATGGAACTTTTAATGCAAATGCTGCAATTTTAGAAGCTGATGAGGATGATGAGTTGATGGAAAAAGTTAAAAAGGATAGAAAAAAAAGGCTTGAAAGACAAGGCATTGTCAATTCCTCCTCAAAGGAAAAAG : GATACTTGCAAGATTTGGTATACAAGCTCAGTAAAGTAGGCCAAGCTATAGAGAAAAATGATTTATCTGCAGCAAGTTCAGTTCTTGGCCAAAACACTGATGCAGATTGGTTGCAGAAAGTTAATTCAGCACTCAACAAG : TTTAGTGGTAGCGATGAGGAGAAGTCAGAGATCGATTCCTTCAATTCTTCGCTATCTTCTCTTGTTTCATCAG : TTACTAAGAATGACATTGAAGGATCAAAAACAGCTTTTGTGGCATCAGCTAGTGCATTTGAGAAATGGACAACATTAACAGGGTTGATTGAAGAGCTAAAAGGGCTTTGAAGCGAAAAAAGAAATTAGTATATTATATGAGAATTTGGTCTATATCAACATGTTTTTACCTTTTAACTTTCTTTTACTGTTTGTGTAACCACAAAGTAATAATTCTTTTACATTGTCTTTTTTTCCTATGTCAAATGAATCATTTGAGTTATACAATGTAATTTGAACAACAGTTATGAAGCTAAAT</gDNA_template>
            <first_frame> G  N  C  V  S  L  K  S  *  I  F  S  S  I  I  F  I  F  H  *  K  T  N  N  F  V  Q  S  R  E  *  C  M  *  F  *  F  N  Y  *  Q  E  K  S  I  N  *  P  C  I  K  F  V  A  F  F  N  W  K  W  N  F  *  C  K  C  C  N  F  R  S  *  *  G  *  *  V  D  G  K  S  *  K  G  *  K  K  K  A  *  K  T  R  H  C  Q  F  L  L  K  G  K  R :   I  L  A  R  F  G  I  Q  A  Q  *  S  R  P  S  Y  R  E  K  *  F  I  C  S  K  F  S  S  W  P  K  H  *  C  R  L  V  A  E  S  *  F  S  T  Q  Q   : V  *  W  *  R  *  G  E  V  R  D  R  F  L  Q  F  F  A  I  F  S  C  F  I  S :   Y  *  E  *  H  *  R  I  K  N  S  F  C  G  I  S  *  C  I  *  E  M  D  N  I  N  R  V  D  *  R  A  K  R  A  L  K  R  K  K  K  L  V  Y  Y  M  R  I  W  S  I  S  T  C  F  Y  L  L  T  F  F  Y  C  L  C  N  H  K  V  I  I  L  L  H  C  L  F  F  L  C  Q  M  N  H  L  S  Y  T  M  *  F  E  Q  Q  L  *  S  *   </first_frame>
            <second_frame>  A  T  V  C  L  S  N  P  K  S  F  L  P  S  S  S  F  S  T  R  K  Q  I  I  L  C  K  A  E  N  N  V  C  N  F  S  S  I  I  S  K  R  S  L  S  I  S  L  A  S  S  L  L  L  S  L  T  G  N  G  T  F  N  A  N  A  A  I  L  E  A  D  E  D  D  E  L  M  E  K  V  K  K  D  R  K  K  R  L  E  R  Q  G  I  V  N  S  S  S  K  E  K   : G  Y  L  Q  D  L  V  Y  K  L  S  K  V  G  Q  A  I  E  K  N  D  L  S  A  A  S  S  V  L  G  Q  N  T  D  A  D  W  L  Q  K  V  N  S  A  L  N  K  :  F  S  G  S  D  E  E  K  S  E  I  D  S  F  N  S  S  L  S  S  L  V  S  S   : V  T  K  N  D  I  E  G  S  K  T  A  F  V  A  S  A  S  A  F  E  K  W  T  T  L  T  G  L  I  E  E  L  K  G  L  *  S  E  K  R  N  *  Y  I  I  *  E  F  G  L  Y  Q  H  V  F  T  F  *  L  S  F  T  V  C  V  T  T  K  *  *  F  F  Y  I  V  F  F  S  Y  V  K  *  I  I  *  V  I  Q  C  N  L  N  N  S  Y  E  A  K  </second_frame>
            <third_frame>   Q  L  C  V  S  Q  I  L  N  L  F  F  H  H  L  H  F  P  L  E  N  K  *  F  C  A  K  Q  R  I  M  Y  V  I  L  V  Q  L  L  A  R  E  V  Y  Q  L  A  L  H  Q  V  C  C  F  L  *  L  E  M  E  L  L  M  Q  M  L  Q  F  *  K  L  M  R  M  M  S  *  W  K  K  L  K  R  I  E  K  K  G  L  K  D  K  A  L  S  I  P  P  Q  R  K  K  :  D  T  C  K  I  W  Y  T  S  S  V  K  *  A  K  L  *  R  K  M  I  Y  L  Q  Q  V  Q  F  L  A  K  T  L  M  Q  I  G  C  R  K  L  I  Q  H  S  T  S :   L  V  V  A  M  R  R  S  Q  R  S  I  P  S  I  L  R  Y  L  L  L  F  H  Q  :  L  L  R  M  T  L  K  D  Q  K  Q  L  L  W  H  Q  L  V  H  L  R  N  G  Q  H  *  Q  G  *  L  K  S  *  K  G  F  E  A  K  K  E  I  S  I  L  Y  E  N  L  V  Y  I  N  M  F  L  P  F  N  F  L  L  L  F  V  *  P  Q  S  N  N  S  F  T  L  S  F  F  P  M  S  N  E  S  F  E  L  Y  N  V  I  *  T  T  V  M  K  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39288" stop="39594"/>
                    <exon start="40333" stop="40472"/>
                    <exon start="40554" stop="40626"/>
                    <exon start="41157" stop="41266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATVCLSNPKSFLPSSSFSTRKQIILCKAENNVCNFSSIISKRSLSISLASSLLLSLTGNGTFNANAAILEADEDDELMEKVKKDRKKRLERQGIVNSSSKEKGYLQDLVYKLSKVGQAIEKNDLSAASSVLGQNTDADWLQKVNSALNKFSGSDEEKSEIDSFNSSLSSLVSSVTKNDIEGSKTAFVASASAFEKWTTLTGLIEELKGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="49752" PGL_stop="41710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49752" e_stop="49636"/>
            <exon e_start="43242" e_stop="41710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="49752" e_stop="49636" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49635" i_stop="43243" i_length="6393"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43242" e_stop="41710" e_length="1533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49752" stop="49636"/>
              <exon start="43242" stop="41710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTATTTTTTTTTTTTTTTGGGAAATTTTGGTTAGGTGGGAAATGGCGAAATCAGTGGAGAAAAATGAAGTTGTGTCTATTGAGCTTCCAGCTCCTTCTGGTTGGAGCAAGAAG : TTTCTGCCTAAAAAAGGAGGTACTCCCAAGAAGAATGATATCGTATTTACTGCACCAACAGGAGAGGAGATCACCACAAGAAAACAGTTGGAACAGTACCTGAAGTCACACCCTGGTGGTCCACCAGTAGCGGAGTTTGATTGGGGAACTGGTGAAACCCCAAGAAGATCGGCGAGGATCACTGGAAAGGCAAAGGCAACTCAATCTCCTACAGAAAGTGAACCTGCTAAGAAACGAGGCAGAAAGTCTTCAGCTTCGAAGAAGGATTCCAAAGACAAAGAAGTCACTAAAGAAACTGAAGCAGCAAAGGATGATGACATGGAGGAAGCTGAAAAGCACGAGAAGGACACTGCAGCAATGGAATCTGAGGAAGATGTTGAAAAAAAAGAAAATGAGAACCCAAATGAAACTCAAGATGGAGAAAGCGAAGTGGAGAAGAAAGATGAAATCCAATCTTCTGAGAAGGATGTTGTGAAGGAGAACTTAGATGAAGGCCAAAATGTTCATGACAAAGTAGAAGATGCTCAAGTTGAGAAAGACGTTCAGATGGCTGATAATGTTGGACCTTCTCAAGATGTTGAAGAGGCTCCTGTTGTTAAAGCAGCTGATGGTCCTGACGCTACTAAAATTAACGAGGAGGAAAAGGATGTACAGGTTCAAGAAGTAGAAAAGGTACCTACTGAAGAAGCTCACATCGAGAAAGATGTTAAGATGGCTGATAATGATGTTGAAGAGGAGACCCCTGCTGATAAAACAGCTGTTGGTCCTGAAGCTACTAATATTAACGAGGAGGGAAAGGATGTACAGGTTCAAGAAGTGGAAATATTACCTACCGAGGAAGCTCAGGTTGAGAAAGATGTCAAAATGACTGATAACATTGGACATCCAGACGTTGTTGAAGAAACCCCTGCTGATGTTCCTGAAGCTACTAAACTAAATGAGGAGGAAAAGGATGTACAGATTCAAGAATCAGAAAACAAACCTAATGAAGAAGCTCAGGTTGAAAAAGATGTCAACAATGTTGAAGAGGCTCTTGCTGAAAAAGCAGCGGAGGAAAAGGATGTACAGGTTCAAGAAGCAGAAAAAGTAGATCCTAGCGCTGCTGAGGAGTTGAAGCATCAAGCAGAAGGAAAGAGTACTGATGATCAAGATAATTTGATGAACATTGAAATAAGTAAGGTGGAGGGAGAAGTAACTGAGAATGGCAGCAATGCCAACGAGGCCAAGCCTTGAGCAGTGGTTCTCTCTAACTCTAACATTTTGCTCTTTTTGCTTCATTTGGATGACTGTAGTGTTGTCAATTATAGATACTCTGATTGTTCATGAGAGACATCTGTATGCAAAACCATAGATTTAGGTCCTAAATATTGCTCTGTAAGGATTTTATCGCCTGTACCAGTACTACTGTATGCCATAGATTTAGACTTTCAGCAGAGACACTAGTGCTGAGGTAATTTGTAGTTGTCCAGATCTGCAAAACTATTGTTAGTACTCAGTATGTAAGCTTATAAAAAGCCTGTGTTTTCTTGACTA</gDNA_template>
            <first_frame> F  S  I  F  F  F  F  W  E  I  L  V  R  W  E  M  A  K  S  V  E  K  N  E  V  V  S  I  E  L  P  A  P  S  G  W  S  K  K  :  F  L  P  K  K  G  G  T  P  K  K  N  D  I  V  F  T  A  P  T  G  E  E  I  T  T  R  K  Q  L  E  Q  Y  L  K  S  H  P  G  G  P  P  V  A  E  F  D  W  G  T  G  E  T  P  R  R  S  A  R  I  T  G  K  A  K  A  T  Q  S  P  T  E  S  E  P  A  K  K  R  G  R  K  S  S  A  S  K  K  D  S  K  D  K  E  V  T  K  E  T  E  A  A  K  D  D  D  M  E  E  A  E  K  H  E  K  D  T  A  A  M  E  S  E  E  D  V  E  K  K  E  N  E  N  P  N  E  T  Q  D  G  E  S  E  V  E  K  K  D  E  I  Q  S  S  E  K  D  V  V  K  E  N  L  D  E  G  Q  N  V  H  D  K  V  E  D  A  Q  V  E  K  D  V  Q  M  A  D  N  V  G  P  S  Q  D  V  E  E  A  P  V  V  K  A  A  D  G  P  D  A  T  K  I  N  E  E  E  K  D  V  Q  V  Q  E  V  E  K  V  P  T  E  E  A  H  I  E  K  D  V  K  M  A  D  N  D  V  E  E  E  T  P  A  D  K  T  A  V  G  P  E  A  T  N  I  N  E  E  G  K  D  V  Q  V  Q  E  V  E  I  L  P  T  E  E  A  Q  V  E  K  D  V  K  M  T  D  N  I  G  H  P  D  V  V  E  E  T  P  A  D  V  P  E  A  T  K  L  N  E  E  E  K  D  V  Q  I  Q  E  S  E  N  K  P  N  E  E  A  Q  V  E  K  D  V  N  N  V  E  E  A  L  A  E  K  A  A  E  E  K  D  V  Q  V  Q  E  A  E  K  V  D  P  S  A  A  E  E  L  K  H  Q  A  E  G  K  S  T  D  D  Q  D  N  L  M  N  I  E  I  S  K  V  E  G  E  V  T  E  N  G  S  N  A  N  E  A  K  P  *  A  V  V  L  S  N  S  N  I  L  L  F  L  L  H  L  D  D  C  S  V  V  N  Y  R  Y  S  D  C  S  *  E  T  S  V  C  K  T  I  D  L  G  P  K  Y  C  S  V  R  I  L  S  P  V  P  V  L  L  Y  A  I  D  L  D  F  Q  Q  R  H  *  C  *  G  N  L  *  L  S  R  S  A  K  L  L  L  V  L  S  M  *  A  Y  K  K  P  V  F  S  *  L </first_frame>
            <second_frame>  F  L  F  F  F  F  F  G  K  F  W  L  G  G  K  W  R  N  Q  W  R  K  M  K  L  C  L  L  S  F  Q  L  L  L  V  G  A  R  S :   F  C  L  K  K  E  V  L  P  R  R  M  I  S  Y  L  L  H  Q  Q  E  R  R  S  P  Q  E  N  S  W  N  S  T  *  S  H  T  L  V  V  H  Q  *  R  S  L  I  G  E  L  V  K  P  Q  E  D  R  R  G  S  L  E  R  Q  R  Q  L  N  L  L  Q  K  V  N  L  L  R  N  E  A  E  S  L  Q  L  R  R  R  I  P  K  T  K  K  S  L  K  K  L  K  Q  Q  R  M  M  T  W  R  K  L  K  S  T  R  R  T  L  Q  Q  W  N  L  R  K  M  L  K  K  K  K  M  R  T  Q  M  K  L  K  M  E  K  A  K  W  R  R  K  M  K  S  N  L  L  R  R  M  L  *  R  R  T  *  M  K  A  K  M  F  M  T  K  *  K  M  L  K  L  R  K  T  F  R  W  L  I  M  L  D  L  L  K  M  L  K  R  L  L  L  L  K  Q  L  M  V  L  T  L  L  K  L  T  R  R  K  R  M  Y  R  F  K  K  *  K  R  Y  L  L  K  K  L  T  S  R  K  M  L  R  W  L  I  M  M  L  K  R  R  P  L  L  I  K  Q  L  L  V  L  K  L  L  I  L  T  R  R  E  R  M  Y  R  F  K  K  W  K  Y  Y  L  P  R  K  L  R  L  R  K  M  S  K  *  L  I  T  L  D  I  Q  T  L  L  K  K  P  L  L  M  F  L  K  L  L  N  *  M  R  R  K  R  M  Y  R  F  K  N  Q  K  T  N  L  M  K  K  L  R  L  K  K  M  S  T  M  L  K  R  L  L  L  K  K  Q  R  R  K  R  M  Y  R  F  K  K  Q  K  K  *  I  L  A  L  L  R  S  *  S  I  K  Q  K  E  R  V  L  M  I  K  I  I  *  *  T  L  K  *  V  R  W  R  E  K  *  L  R  M  A  A  M  P  T  R  P  S  L  E  Q  W  F  S  L  T  L  T  F  C  S  F  C  F  I  W  M  T  V  V  L  S  I  I  D  T  L  I  V  H  E  R  H  L  Y  A  K  P  *  I  *  V  L  N  I  A  L  *  G  F  Y  R  L  Y  Q  Y  Y  C  M  P  *  I  *  T  F  S  R  D  T  S  A  E  V  I  C  S  C  P  D  L  Q  N  Y  C  *  Y  S  V  C  K  L  I  K  S  L  C  F  L  D   </second_frame>
            <third_frame>   F  Y  F  F  F  F  L  G  N  F  G  *  V  G  N  G  E  I  S  G  E  K  *  S  C  V  Y  *  A  S  S  S  F  W  L  E  Q  E   : V  S  A  *  K  R  R  Y  S  Q  E  E  *  Y  R  I  Y  C  T  N  R  R  G  D  H  H  K  K  T  V  G  T  V  P  E  V  T  P  W  W  S  T  S  S  G  V  *  L  G  N  W  *  N  P  K  K  I  G  E  D  H  W  K  G  K  G  N  S  I  S  Y  R  K  *  T  C  *  E  T  R  Q  K  V  F  S  F  E  E  G  F  Q  R  Q  R  S  H  *  R  N  *  S  S  K  G  *  *  H  G  G  S  *  K  A  R  E  G  H  C  S  N  G  I  *  G  R  C  *  K  K  R  K  *  E  P  K  *  N  S  R  W  R  K  R  S  G  E  E  R  *  N  P  I  F  *  E  G  C  C  E  G  E  L  R  *  R  P  K  C  S  *  Q  S  R  R  C  S  S  *  E  R  R  S  D  G  *  *  C  W  T  F  S  R  C  *  R  G  S  C  C  *  S  S  *  W  S  *  R  Y  *  N  *  R  G  G  K  G  C  T  G  S  R  S  R  K  G  T  Y  *  R  S  S  H  R  E  R  C  *  D  G  *  *  *  C  *  R  G  D  P  C  *  *  N  S  C  W  S  *  S  Y  *  Y  *  R  G  G  K  G  C  T  G  S  R  S  G  N  I  T  Y  R  G  S  S  G  *  E  R  C  Q  N  D  *  *  H  W  T  S  R  R  C  *  R  N  P  C  *  C  S  *  S  Y  *  T  K  *  G  G  K  G  C  T  D  S  R  I  R  K  Q  T  *  *  R  S  S  G  *  K  R  C  Q  Q  C  *  R  G  S  C  *  K  S  S  G  G  K  G  C  T  G  S  R  S  R  K  S  R  S  *  R  C  *  G  V  E  A  S  S  R  R  K  E  Y  *  *  S  R  *  F  D  E  H  *  N  K  *  G  G  G  R  S  N  *  E  W  Q  Q  C  Q  R  G  Q  A  L  S  S  G  S  L  *  L  *  H  F  A  L  F  A  S  F  G  *  L  *  C  C  Q  L  *  I  L  *  L  F  M  R  D  I  C  M  Q  N  H  R  F  R  S  *  I  L  L  C  K  D  F  I  A  C  T  S  T  T  V  C  H  R  F  R  L  S  A  E  T  L  V  L  R  *  F  V  V  V  Q  I  C  K  T  I  V  S  T  Q  Y  V  S  L  *  K  A  C  V  F  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49752" stop="49636"/>
                    <exon start="43242" stop="42010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIFFFFWEILVRWEMAKSVEKNEVVSIELPAPSGWSKKFLPKKGGTPKKNDIVFTAPTGEEITTRKQLEQYLKSHPGGPPVAEFDWGTGETPRRSARITGKAKATQSPTESEPAKKRGRKSSASKKDSKDKEVTKETEAAKDDDMEEAEKHEKDTAAMESEEDVEKKENENPNETQDGESEVEKKDEIQSSEKDVVKENLDEGQNVHDKVEDAQVEKDVQMADNVGPSQDVEEAPVVKAADGPDATKINEEEKDVQVQEVEKVPTEEAHIEKDVKMADNDVEEETPADKTAVGPEATNINEEGKDVQVQEVEILPTEEAQVEKDVKMTDNIGHPDVVEETPADVPEATKLNEEEKDVQIQESENKPNEEAQVEKDVNNVEEALAEKAAEEKDVQVQEAEKVDPSAAEELKHQAEGKSTDDQDNLMNIEISKVEGEVTENGSNANEAKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="67459" PGL_stop="74875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67459" e_stop="67524"/>
            <exon e_start="68072" e_stop="68303"/>
            <exon e_start="68927" e_stop="68989"/>
            <exon e_start="69108" e_stop="69179"/>
            <exon e_start="70196" e_stop="70303"/>
            <exon e_start="70384" e_stop="70458"/>
            <exon e_start="70563" e_stop="70616"/>
            <exon e_start="71499" e_stop="71624"/>
            <exon e_start="72147" e_stop="72236"/>
            <exon e_start="72619" e_stop="72741"/>
            <exon e_start="72913" e_stop="73032"/>
            <exon e_start="73556" e_stop="73672"/>
            <exon e_start="74189" e_stop="74245"/>
            <exon e_start="74330" e_stop="74404"/>
            <exon e_start="74511" e_stop="74875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.991" e_score="0.985"/>
          <exon-intron don_prob="0.986" acc_prob="0.030" e_score="0.996"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.715" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="67459" e_stop="67524" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.991">
            <gDNA_intron_boundary i_start="67525" i_stop="68071" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="68072" e_stop="68303" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.030">
            <gDNA_intron_boundary i_start="68304" i_stop="68926" i_length="623"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68927" e_stop="68989" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68990" i_stop="69107" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69108" e_stop="69179" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69180" i_stop="70195" i_length="1016"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70196" e_stop="70303" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.920">
            <gDNA_intron_boundary i_start="70304" i_stop="70383" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70384" e_stop="70458" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.936">
            <gDNA_intron_boundary i_start="70459" i_stop="70562" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70563" e_stop="70616" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70617" i_stop="71498" i_length="882"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71499" e_stop="71624" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.945">
            <gDNA_intron_boundary i_start="71625" i_stop="72146" i_length="522"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72147" e_stop="72236" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.916">
            <gDNA_intron_boundary i_start="72237" i_stop="72618" i_length="382"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="72619" e_stop="72741" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72742" i_stop="72912" i_length="171"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="72913" e_stop="73032" e_length="120"/>
          </exon>
          <intron i_serial="11" don_prob="0.715" acc_prob="0.943">
            <gDNA_intron_boundary i_start="73033" i_stop="73555" i_length="523"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="73556" e_stop="73672" e_length="117"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73673" i_stop="74188" i_length="516"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="74189" e_stop="74245" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.895">
            <gDNA_intron_boundary i_start="74246" i_stop="74329" i_length="84"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="74330" e_stop="74404" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74405" i_stop="74510" i_length="106"/>
          </intron>
          <exon e_serial="15" e_score="0.995">
            <gDNA_exon_boundary e_start="74511" e_stop="74875" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67459" stop="67524"/>
              <exon start="68072" stop="68303"/>
              <exon start="68927" stop="68989"/>
              <exon start="69108" stop="69179"/>
              <exon start="70196" stop="70303"/>
              <exon start="70384" stop="70458"/>
              <exon start="70563" stop="70616"/>
              <exon start="71499" stop="71624"/>
              <exon start="72147" stop="72236"/>
              <exon start="72619" stop="72741"/>
              <exon start="72913" stop="73032"/>
              <exon start="73556" stop="73672"/>
              <exon start="74189" stop="74245"/>
              <exon start="74330" stop="74404"/>
              <exon start="74511" stop="74875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCGATCAGATTTCTCCGTTGCTCAATTTCCCGGCGACTTCTCCACCGGAATTTCTCCATTTCCG : GTTTTTGATGAGCTATAGTTGAAGGTTGCTTTGCTTTTGGTGATCTGTGGGAAATGAGTGTTCAGTGATGAAGAAAGTGAAGAGAAAGCTTGGGAAGTATGAAGTTGGCAGAACTATTGGTGAAGGGACATTTGCCAAGGTTAAGTTTGCACGAAACACCGAGACTGGAGAGAATGTTGCCATTAAAGTCTTGGCCAAAAGTACCATTCTTAAGCATAGAATGGTTGAACAG : ATCAAAAGAGAGATATCTATAATGAAGATTGTCAGACATCCTTGCATAGTTCGACTTCATGAG : GTTTTAGCTAGCCAGACAAAAATATATATCGTTCAGGAGTTTGTCACTGGAGGAGAGCTTTTTGATAAAATT : GTTCATCTAGGTAGGCTTTCTGAGGATGAAGCAAGGAGATACTTCCAAGAACTCATAGATGCAATTGCTCACTGTCACAGCAAGGGTGTTTACCACAGAGATTTGAAG : CCTGAAAATTTGCTTCTTGATTTCCAAGGGAACTTAAAAATTTCTGACTTTGGGCTTAGTGCATTGCCTCAACAA : GGAGTCGAGCTCCTCTATACCACTTGTGGGACTCCAAATTATGTTGCACCTGAG : GTGTTAGGTAACCGAGGTTATGATGGTGCTGCTGCGGATGTGTGGTCATGTGGTATCATCCTTTATGTTCTGATGGCAGGATATCTTCCATTTGATGAGACAGACCTTCCTACCTTGTATACAAAG : ATCAAGGCTGCTGAATTTTCCTGTCCATTTTGGTTTTCTCCTGGTGCAACATCGTTGATTCAAAAAATCATTGATCCAAATCCTCAAACT : AGGATCAAGATTGATGGAATAAAACGAGACCCTTGGTTCCGGAAAAACTACAGAGCTGTTAAAGCTAAAGCAGATGAAGTAGTGAATCTTGATGATATCCATGCTGTGTTCGACGACATTGAG : GATGCATTTGTCAGTGAAAAATCAGAAGATAGTGAGAGTGGTCCCTTGGTAATGAATGCATTTGAGATGATAACACTATCTCAGGGATTAAATCTATCCGCTTTGTTTGACAGACGTCAG : GATTATGTCAAGCGTCAAACTCGATTTATTTCCCGCCAACCTGCTAAAGTCGTCATTGAAACTATTGAAGCAGCTGCAGAGTCGTTGGGTCTTAAGGTCCACACACGCGATTACAAG : ACAAGAATTGAGGGGGTAACGGCAAATAGGGCTGGTCAATTTGCTGTTGTGCTGGAG : GTTTTCCAAGTAGCCCCTTCCCTTTTTATGGTTGATGTTAGAAAGGCTGCTGGGGACACTCTTGAATATCACAAG : TTCTACAAAACCTTCTGCACGAAAATTGACGACGTCATTTGGAAACCGAAGGAAGGCATGTCAAATGCTGTTCTGCTTAGGACAAGGACTCGCTGAACCAGATTTCTGGGAATGAAGTGAATCACTTATCAATTTGATGTGCTCCGAAGACGTTCGTTGTGTTAGGTATAGTGTGTGTAACTGCATGTTGTTAATCTTTTGTTCACTACATATCTTAAGTGATAAATCATGGGCTCAAAAGCAATACAAGTAGGGTTGTAAATGAGACGGTTCGATCAGTTGTAACCAATTTTTCGGATATTATATAATGTATAACCAAAACTAGACTTTTCAAAACCATCCCAATAATATCGGTTTCTCTTTGG</gDNA_template>
            <first_frame> N  R  S  D  F  S  V  A  Q  F  P  G  D  F  S  T  G  I  S  P  F  P  :  V  F  D  E  L  *  L  K  V  A  L  L  L  V  I  C  G  K  *  V  F  S  D  E  E  S  E  E  K  A  W  E  V  *  S  W  Q  N  Y  W  *  R  D  I  C  Q  G  *  V  C  T  K  H  R  D  W  R  E  C  C  H  *  S  L  G  Q  K  Y  H  S  *  A  *  N  G  *  T   : D  Q  K  R  D  I  Y  N  E  D  C  Q  T  S  L  H  S  S  T  S  *   : G  F  S  *  P  D  K  N  I  Y  R  S  G  V  C  H  W  R  R  A  F  *  *  N   : C  S  S  R  *  A  F  *  G  *  S  K  E  I  L  P  R  T  H  R  C  N  C  S  L  S  Q  Q  G  C  L  P  Q  R  F  E   : A  *  K  F  A  S  *  F  P  R  E  L  K  N  F  *  L  W  A  *  C  I  A  S  T   : R  S  R  A  P  L  Y  H  L  W  D  S  K  L  C  C  T  *   : G  V  R  *  P  R  L  *  W  C  C  C  G  C  V  V  M  W  Y  H  P  L  C  S  D  G  R  I  S  S  I  *  *  D  R  P  S  Y  L  V  Y  K   : D  Q  G  C  *  I  F  L  S  I  L  V  F  S  W  C  N  I  V  D  S  K  N  H  *  S  K  S  S  N   : *  D  Q  D  *  W  N  K  T  R  P  L  V  P  E  K  L  Q  S  C  *  S  *  S  R  *  S  S  E  S  *  *  Y  P  C  C  V  R  R  H  *   : G  C  I  C  Q  *  K  I  R  R  *  *  E  W  S  L  G  N  E  C  I  *  D  D  N  T  I  S  G  I  K  S  I  R  F  V  *  Q  T  S   : G  L  C  Q  A  S  N  S  I  Y  F  P  P  T  C  *  S  R  H  *  N  Y  *  S  S  C  R  V  V  G  S  *  G  P  H  T  R  L  Q   : D  K  N  *  G  G  N  G  K  *  G  W  S  I  C  C  C  A  G   : G  F  P  S  S  P  F  P  F  Y  G  *  C  *  K  G  C  W  G  H  S  *  I  S  Q   : V  L  Q  N  L  L  H  E  N  *  R  R  H  L  E  T  E  G  R  H  V  K  C  C  S  A  *  D  K  D  S  L  N  Q  I  S  G  N  E  V  N  H  L  S  I  *  C  A  P  K  T  F  V  V  L  G  I  V  C  V  T  A  C  C  *  S  F  V  H  Y  I  S  *  V  I  N  H  G  L  K  S  N  T  S  R  V  V  N  E  T  V  R  S  V  V  T  N  F  S  D  I  I  *  C  I  T  K  T  R  L  F  K  T  I  P  I  I  S  V  S  L  W </first_frame>
            <second_frame>  I  D  Q  I  S  P  L  L  N  F  P  A  T  S  P  P  E  F  L  H  F  R :   F  L  M  S  Y  S  *  R  L  L  C  F  W  *  S  V  G  N  E  C  S  V  M  K  K  V  K  R  K  L  G  K  Y  E  V  G  R  T  I  G  E  G  T  F  A  K  V  K  F  A  R  N  T  E  T  G  E  N  V  A  I  K  V  L  A  K  S  T  I  L  K  H  R  M  V  E  Q  :  I  K  R  E  I  S  I  M  K  I  V  R  H  P  C  I  V  R  L  H  E  :  V  L  A  S  Q  T  K  I  Y  I  V  Q  E  F  V  T  G  G  E  L  F  D  K  I  :  V  H  L  G  R  L  S  E  D  E  A  R  R  Y  F  Q  E  L  I  D  A  I  A  H  C  H  S  K  G  V  Y  H  R  D  L  K  :  P  E  N  L  L  L  D  F  Q  G  N  L  K  I  S  D  F  G  L  S  A  L  P  Q  Q  :  G  V  E  L  L  Y  T  T  C  G  T  P  N  Y  V  A  P  E  :  V  L  G  N  R  G  Y  D  G  A  A  A  D  V  W  S  C  G  I  I  L  Y  V  L  M  A  G  Y  L  P  F  D  E  T  D  L  P  T  L  Y  T  K  :  I  K  A  A  E  F  S  C  P  F  W  F  S  P  G  A  T  S  L  I  Q  K  I  I  D  P  N  P  Q  T  :  R  I  K  I  D  G  I  K  R  D  P  W  F  R  K  N  Y  R  A  V  K  A  K  A  D  E  V  V  N  L  D  D  I  H  A  V  F  D  D  I  E  :  D  A  F  V  S  E  K  S  E  D  S  E  S  G  P  L  V  M  N  A  F  E  M  I  T  L  S  Q  G  L  N  L  S  A  L  F  D  R  R  Q  :  D  Y  V  K  R  Q  T  R  F  I  S  R  Q  P  A  K  V  V  I  E  T  I  E  A  A  A  E  S  L  G  L  K  V  H  T  R  D  Y  K  :  T  R  I  E  G  V  T  A  N  R  A  G  Q  F  A  V  V  L  E  :  V  F  Q  V  A  P  S  L  F  M  V  D  V  R  K  A  A  G  D  T  L  E  Y  H  K  :  F  Y  K  T  F  C  T  K  I  D  D  V  I  W  K  P  K  E  G  M  S  N  A  V  L  L  R  T  R  T  R  *  T  R  F  L  G  M  K  *  I  T  Y  Q  F  D  V  L  R  R  R  S  L  C  *  V  *  C  V  *  L  H  V  V  N  L  L  F  T  T  Y  L  K  *  *  I  M  G  S  K  A  I  Q  V  G  L  *  M  R  R  F  D  Q  L  *  P  I  F  R  I  L  Y  N  V  *  P  K  L  D  F  S  K  P  S  Q  *  Y  R  F  L  F   </second_frame>
            <third_frame>   S  I  R  F  L  R  C  S  I  S  R  R  L  L  H  R  N  F  S  I  S   : G  F  *  *  A  I  V  E  G  C  F  A  F  G  D  L  W  E  M  S  V  Q  *  *  R  K  *  R  E  S  L  G  S  M  K  L  A  E  L  L  V  K  G  H  L  P  R  L  S  L  H  E  T  P  R  L  E  R  M  L  P  L  K  S  W  P  K  V  P  F  L  S  I  E  W  L  N  R :   S  K  E  R  Y  L  *  *  R  L  S  D  I  L  A  *  F  D  F  M  R :   F  *  L  A  R  Q  K  Y  I  S  F  R  S  L  S  L  E  E  S  F  L  I  K  L :   F  I  *  V  G  F  L  R  M  K  Q  G  D  T  S  K  N  S  *  M  Q  L  L  T  V  T  A  R  V  F  T  T  E  I  *  S :   L  K  I  C  F  L  I  S  K  G  T  *  K  F  L  T  L  G  L  V  H  C  L  N  K :   E  S  S  S  S  I  P  L  V  G  L  Q  I  M  L  H  L  R :   C  *  V  T  E  V  M  M  V  L  L  R  M  C  G  H  V  V  S  S  F  M  F  *  W  Q  D  I  F  H  L  M  R  Q  T  F  L  P  C  I  Q  R :   S  R  L  L  N  F  P  V  H  F  G  F  L  L  V  Q  H  R  *  F  K  K  S  L  I  Q  I  L  K  L :   G  S  R  L  M  E  *  N  E  T  L  G  S  G  K  T  T  E  L  L  K  L  K  Q  M  K  *  *  I  L  M  I  S  M  L  C  S  T  T  L  R :   M  H  L  S  V  K  N  Q  K  I  V  R  V  V  P  W  *  *  M  H  L  R  *  *  H  Y  L  R  D  *  I  Y  P  L  C  L  T  D  V  R :   I  M  S  S  V  K  L  D  L  F  P  A  N  L  L  K  S  S  L  K  L  L  K  Q  L  Q  S  R  W  V  L  R  S  T  H  A  I  T  R :   Q  E  L  R  G  *  R  Q  I  G  L  V  N  L  L  L  C  W  R :   F  S  K  *  P  L  P  F  L  W  L  M  L  E  R  L  L  G  T  L  L  N  I  T  S :   S  T  K  P  S  A  R  K  L  T  T  S  F  G  N  R  R  K  A  C  Q  M  L  F  C  L  G  Q  G  L  A  E  P  D  F  W  E  *  S  E  S  L  I  N  L  M  C  S  E  D  V  R  C  V  R  Y  S  V  C  N  C  M  L  L  I  F  C  S  L  H  I  L  S  D  K  S  W  A  Q  K  Q  Y  K  *  G  C  K  *  D  G  S  I  S  C  N  Q  F  F  G  Y  Y  I  M  Y  N  Q  N  *  T  F  Q  N  H  P  N  N  I  G  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68115" stop="68303"/>
                    <exon start="68927" stop="68989"/>
                    <exon start="69108" stop="69179"/>
                    <exon start="70196" stop="70303"/>
                    <exon start="70384" stop="70458"/>
                    <exon start="70563" stop="70616"/>
                    <exon start="71499" stop="71624"/>
                    <exon start="72147" stop="72236"/>
                    <exon start="72619" stop="72741"/>
                    <exon start="72913" stop="73032"/>
                    <exon start="73556" stop="73672"/>
                    <exon start="74189" stop="74245"/>
                    <exon start="74330" stop="74404"/>
                    <exon start="74511" stop="74606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVGNECSVMKKVKRKLGKYEVGRTIGEGTFAKVKFARNTETGENVAIKVLAKSTILKHRMVEQIKREISIMKIVRHPCIVRLHEVLASQTKIYIVQEFVTGGELFDKIVHLGRLSEDEARRYFQELIDAIAHCHSKGVYHRDLKPENLLLDFQGNLKISDFGLSALPQQGVELLYTTCGTPNYVAPEVLGNRGYDGAAADVWSCGIILYVLMAGYLPFDETDLPTLYTKIKAAEFSCPFWFSPGATSLIQKIIDPNPQTRIKIDGIKRDPWFRKNYRAVKAKADEVVNLDDIHAVFDDIEDAFVSEKSEDSESGPLVMNAFEMITLSQGLNLSALFDRRQDYVKRQTRFISRQPAKVVIETIEAAAESLGLKVHTRDYKTRIEGVTANRAGQFAVVLEVFQVAPSLFMVDVRKAAGDTLEYHKFYKTFCTKIDDVIWKPKEGMSNAVLLRTRTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="86217" PGL_stop="82486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86217" e_stop="85970"/>
            <exon e_start="85110" e_stop="82486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86217" e_stop="85970" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.932">
            <gDNA_intron_boundary i_start="85969" i_stop="85111" i_length="859"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="85110" e_stop="82486" e_length="2625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86217" stop="85970"/>
              <exon start="85110" stop="82486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG : GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTTGTCTTAAAACAAC</gDNA_template>
            <first_frame> L  S  L  F  S  L  *  P  Q  S  F  F  L  S  L  F  F  A  L  L  C  W  G  S  L  K  I  C  I  F  E  G  S  *  K  K  I  G  F  F  H  L  E  C  E  S  W  L  R  I  *  S  G  L  C  F  S  W  F  K  I  *  S  F  L  L  Y  S  L  G  L  K  N  N  H  A  Y  S  C  *  L  Q  W :   *  *  *  V  L  L  W  W  I  V  L  F  C  R  F  G  S  H  V  V  F  G  S  C  *  C  L  L  S  S  *  E  E  G  *  N  *  W  P  V  C  C  R  R  P  I  K  G  S  I  S  *  G  S  S  *  *  M  P  I  *  D  P  Q  T  I  A  W  R  P  R  K  G  C  S  S  L  C  F  *  A  L  A  Y  S  V  E  *  R  E  K  L  *  N  L  Q  E  Q  E  L  *  Q  S  K  *  R  Y  N  D  L  *  R  *  R  S  *  S  *  M  *  W  I  P  Y  Q  V  C  G  R  E  E  S  Y  *  Y  *  T  C  C  N  C  S  W  D  V  Y  P  W  W  T  R  K  A  F  Y  S  R  E  *  L  S  S  W  Y  Y  *  C  R  S  I  C  C  C  T  W  V  S  F  S  *  G  P  I  I  V  E  C  S  F  Y  R  R  *  R  S  L  G  G  C  K  R  M  P  F  I  R  K  A  R  S  E  P  L  S  F  N  L  Q  Q  G  S  C  C  N  S  R  E  L  P  *  L  D  F  I  D  Y  *  I  L  S  K  Y  W  K  R  R  L  A  S  C  W  K  I  L  H  Q  T  T  V  S  Y  N  *  G  L  P  A  C  R  R  S  G  S  C  *  S  S  V  I  R  C  F  N  V  N  K  S  E  T  T  W  S  K  H  Y  R  F  L  A  C  C  H  W  S  L  R  Q  A  D  Y  Q  S  *  S  L  F  T  S  *  C  E  S  E  G  I  L  G  H  G  *  C  S  R  P  P  V  F  G  F  F  D  N  H  L  M  P  G  S  H  *  C  R  S  *  S  C  G  K  G  M  P  K  S  Q  I  Y  V  H  S  Q  V  L  L  C  F  *  R  W  S  C  C  F  R  *  R  G  W  I  S  R  E  F  N  L  G  G  V  Q  Q  N  Y  P  S  R  Y  P  *  C  S  F  K  L  Q  E  V  K  V  S  F  P  S  E  V  H  G  N  Q  G  S  S  S  T  N  F  H  A  V  S  M  *  I  S  S  V  L  V  Y  P  K  L  S  R  I  R  E  Q  *  L  S  Y  G  W  *  A  L  P  Q  A  A  S  I  R  S  Q  W  A  L  W  N  N  R  C  W  S  S  P  T  L  G  E  L  *  R  T  C  *  G  E  P  *  R  L  P  E  L  D  R  P  S  G  A  F  I  G  Y  A  T  W  R  D  P  *  I  V  E  S  R  R  M  Q  E  G  Y  R  C  K  F  S  G  N  C  R  L  L  P  I  T  Y  *  S  *  C  F  *  E  C  N  N  *  F  W  C  S  C  F  I  P  W  S  A  S  E  F  A  G  P  F  L  I  R  L  L  H  G  I  E  Q  E  C  P  F  S  *  K  V  R  R  E  S  T  R  L  E  S  P  A  L  L  R  *  L  Q  L  S  R  A  S  C  G  G  F  V  E  V  *  H  P  L  L  N  P  Q  R  A  Q  G  N  A  F  E  M  V  K  T  N  K  Q  K  A  K  L  V  H  S  A  W  Q  L  Q  K  Q  T  *  V  F  F  F  *  P  V  Y  I  R  G  Y  L  I  L  Q  C  L  G  C  F  P  G  R  Y  G  I  H  L  F  P  T  I  F  C  R  A  S  S  N  R  N  P  V  S  A  I  F  G  D  L  P  P  S  C  H  G  L  L  R  I  Q  S  P  S  T  E  I  K  I  F  T  H  A  A  P  R  E  P  G  G  L  N  H  S  A  K  T  A  I  D  K  I  H  R  A  F  A  S  F  V  L  S  Y  I  A  G  I  R  H  *  L  C  S  F  F  S  C  S  R  V  F  S  V  F  T  V  S  I  L  L  C  V  F  *  S  L  V  A  L  S  K  F  L  L  L  W  C  L  L  F  P  G  A  W  P  L  Q  P  Y  I  G  C  F  F  N  Q  S  L  V  F  *  *  D  Y  Q  C  P  I  F  L  P  G  S  I  Y  S  D  L  Y  S  L  P  L  C  F  F  F  L  Y  I  M  K  *  *  F  V  C  L  K  T   </first_frame>
            <second_frame>  F  L  C  S  L  F  N  L  N  L  S  F  S  L  Y  F  L  P  Y  S  V  G  V  L  *  K  S  V  F  L  R  V  L  E  K  K  L  D  F  F  I  W  N  A  N  L  G  *  G  Y  N  L  G  C  V  F  L  G  S  K  S  D  L  F  C  F  T  V  W  D  *  R  T  I  M  P  T  L  V  N  Y  S   : G  D  D  E  F  Y  S  G  G  S  F  C  S  A  D  L  G  L  M  L  S  L  G  H  A  D  V  Y  C  P  P  R  K  R  A  R  I  S  G  P  F  V  V  E  D  R  S  K  D  P  S  L  E  V  L  P  D  E  C  L  F  E  I  L  R  R  L  P  G  G  R  E  R  G  A  A  A  C  V  S  K  R  W  L  T  V  L  S  S  V  K  N  S  E  I  C  R  S  K  S  Y  N  N  L  N  D  A  I  M  I  S  K  D  E  D  L  E  V  E  C  D  G  Y  L  T  R  C  V  E  G  K  K  A  T  D  I  R  L  A  A  I  A  V  G  T  S  T  R  G  G  L  G  K  L  S  I  R  G  S  N  S  V  R  G  I  T  N  V  G  L  S  A  V  A  H  G  C  P  S  L  R  V  L  S  L  W  N  V  P  S  I  G  D  E  G  L  L  E  V  A  R  E  C  H  S  L  E  K  L  D  L  S  H  C  R  S  I  S  N  K  G  L  V  A  I  A  E  N  C  P  S  L  T  S  L  T  I  E  S  C  P  N  I  G  N  E  G  L  Q  A  V  G  K  Y  C  T  K  L  Q  S  L  T  I  K  D  C  P  L  V  G  D  Q  G  V  A  S  L  L  S  S  G  A  S  M  L  T  K  V  K  L  H  G  L  N  I  T  D  F  S  L  A  V  I  G  H  Y  G  K  L  I  T  S  L  N  L  C  S  L  R  N  V  S  Q  K  G  F  W  V  M  G  N  A  Q  G  L  Q  S  L  V  S  L  T  I  T  L  C  Q  G  A  T  D  V  G  L  E  A  V  G  K  G  C  P  N  L  K  Y  M  C  I  R  K  C  C  F  V  S  D  G  G  L  V  A  F  A  K  E  A  G  S  L  E  S  L  I  L  E  E  C  N  R  I  T  Q  V  G  I  L  N  A  V  S  N  C  R  K  L  K  S  L  S  L  V  K  C  M  G  I  K  D  L  A  L  Q  T  S  M  L  S  P  C  E  S  L  R  S  L  S  I  R  S  C  P  G  F  G  S  S  S  L  A  M  V  G  K  L  C  P  K  L  H  Q  L  D  L  S  G  L  C  G  I  T  D  A  G  L  L  P  L  L  E  N  C  E  G  L  V  K  V  N  L  S  D  C  L  N  L  T  D  Q  V  V  L  S  L  A  M  R  H  G  E  T  L  E  L  L  N  L  D  G  C  R  K  V  T  D  A  S  L  V  A  I  A  D  Y  C  P  L  L  I  D  L  D  V  S  K  S  A  I  T  D  S  G  V  A  A  L  S  R  G  V  Q  V  N  L  Q  V  L  S  L  S  G  C  S  M  V  S  N  K  S  V  L  S  L  K  K  L  G  E  N  L  L  G  L  N  L  Q  H  C  S  V  S  C  S  S  V  E  L  L  V  E  A  L  W  R  C  D  I  L  S  *  T  H  K  G  H  K  E  M  H  S  K  W  S  K  R  I  S  R  K  L  N  W  F  I  Q  P  G  N  Y  R  S  K  H  E  C  S  F  F  S  P  Y  I  F  V  A  I  *  Y  F  S  V  S  V  V  F  Q  D  A  M  A  Y  I  F  F  P  P  F  F  A  G  L  R  Q  I  E  T  L  F  Q  P  F  L  E  T  Y  L  H  H  A  M  V  S  *  E  Y  S  H  L  V  L  R  L  K  F  S  L  M  L  L  L  E  S  Q  A  V  *  I  I  Q  L  K  L  R  *  T  R  F  I  A  H  L  P  L  L  C  L  A  T  L  Q  E  S  D  T  S  C  V  V  F  F  H  V  Q  E  S  L  V  F  S  L  *  V  F  Y  Y  V  S  F  S  L  *  L  L  *  A  N  F  C  C  C  G  A  C  Y  S  Q  G  L  G  H  Y  N  L  I  *  V  V  F  L  T  S  P  *  F  F  D  R  I  I  N  V  L  F  F  Y  Q  V  P  Y  I  Q  I  C  T  P  C  R  Y  V  F  F  F  Y  I  *  *  S  N  S  L  F  V  L  K  Q  </second_frame>
            <third_frame>   F  F  V  L  S  L  T  S  I  F  L  S  L  S  I  F  C  P  T  L  L  G  F  F  K  N  L  Y  F  *  G  F  L  K  K  N  W  I  F  S  S  G  M  R  I  L  V  K  D  I  I  W  V  V  F  F  L  V  Q  N  L  I  F  F  A  L  Q  F  G  I  E  E  Q  S  C  L  L  L  L  I  T  V  :  V  M  M  S  S  T  L  V  D  R  F  V  L  Q  I  W  V  S  C  C  L  W  V  M  L  M  F  T  V  L  L  G  R  G  L  E  L  V  A  R  L  L  S  K  T  D  Q  R  I  H  L  L  R  F  F  L  M  N  A  Y  L  R  S  S  D  D  C  L  E  A  E  K  G  V  Q  Q  L  V  F  L  S  A  G  L  Q  C  *  V  A  *  K  T  L  K  F  A  G  A  R  A  I  T  I  *  M  T  L  *  *  S  L  K  M  K  I  L  K  L  N  V  M  D  T  L  P  G  V  W  K  G  R  K  L  L  I  L  D  L  L  Q  L  Q  L  G  R  L  P  V  V  D  *  E  S  F  L  F  E  G  V  T  Q  F  V  V  L  L  M  S  V  Y  L  L  L  H  M  G  V  L  L  L  G  S  Y  H  C  G  M  F  L  L  S  E  M  K  V  S  W  R  L  Q  E  N  A  I  H  *  K  S  *  I  *  A  T  V  V  Q  S  P  T  R  V  L  L  Q  *  Q  R  I  A  L  A  *  L  H  *  L  L  N  P  V  Q  I  L  E  T  K  A  C  K  L  L  E  N  T  A  P  N  Y  S  L  L  Q  L  R  T  A  R  L  S  E  I  R  E  L  L  V  F  C  H  Q  V  L  Q  C  *  Q  K  *  N  Y  M  V  *  T  L  P  I  S  R  L  L  S  L  V  T  T  A  S  *  L  P  V  L  I  F  V  H  F  V  M  *  V  R  R  D  F  G  S  W  V  M  L  K  A  S  S  L  W  F  L  *  Q  S  P  Y  A  R  E  P  L  M  S  V  L  K  L  W  E  R  D  A  Q  I  S  N  I  C  A  F  A  S  V  A  L  F  L  T  V  V  L  L  L  S  L  K  R  L  D  L  S  R  V  *  S  W  R  S  A  T  E  L  P  K  *  V  S  L  M  Q  F  Q  T  A  G  S  *  S  L  F  P  *  *  S  A  W  E  S  R  I  *  L  Y  K  L  P  C  C  L  H  V  N  L  F  G  P  C  L  S  E  A  V  Q  D  S  G  A  V  A  *  L  W  L  V  S  S  A  P  S  C  I  N  *  I  S  V  G  F  V  E  *  P  M  L  V  F  S  H  S  W  R  T  V  K  D  L  L  R  *  T  L  A  T  A  *  T  *  Q  T  K  W  C  F  H  W  L  C  D  M  A  R  P  L  N  C  *  I  S  T  D  A  G  R  L  P  M  Q  V  *  W  Q  L  Q  I  I  A  H  Y  L  L  I  L  M  F  L  R  V  Q  *  L  I  L  V  *  L  L  Y  P  V  E  C  K  *  I  C  R  S  F  P  Y  Q  V  A  P  W  Y  R  T  R  V  S  F  L  L  K  S  *  E  R  I  Y  S  A  *  I  S  S  I  A  P  L  V  A  A  Q  S  S  F  L  W  R  L  C  G  G  V  T  S  S  P  K  P  T  K  G  T  R  K  C  I  R  N  G  Q  N  E  *  A  E  S  *  I  G  S  F  S  L  A  I  T  E  A  N  M  S  V  L  F  L  A  R  I  Y  S  W  L  S  N  T  S  V  S  R  L  F  S  R  T  L  W  H  T  S  F  S  H  H  F  L  Q  G  F  V  K  S  K  P  C  F  S  H  F  W  R  L  T  S  I  M  P  W  S  P  E  N  T  V  T  *  Y  *  D  *  N  F  H  S  C  C  S  S  R  A  R  R  F  E  S  F  S  *  N  C  D  R  Q  D  S  S  R  I  C  L  F  C  A  *  L  H  C  R  N  Q  T  L  V  V  *  F  F  F  M  F  K  S  L  *  C  F  H  C  K  Y  S  I  M  C  L  L  V  F  S  C  F  E  Q  I  S  V  V  V  V  P  V  I  P  R  G  L  A  I  T  T  L  Y  R  L  F  F  *  P  V  P  S  F  L  I  G  L  S  M  S  Y  F  F  T  R  F  H  I  F  R  F  V  L  L  A  A  M  F  F  F  S  I  Y  N  E  V  I  V  C  L  S  *  N  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86003" stop="85970"/>
                    <exon start="85110" stop="83222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTIMPTLVNYSGDDEFYSGGSFCSADLGLMLSLGHADVYCPPRKRARISGPFVVEDRSKDPSLEVLPDECLFEILRRLPGGRERGAAACVSKRWLTVLSSVKNSEICRSKSYNNLNDAIMISKDEDLEVECDGYLTRCVEGKKATDIRLAAIAVGTSTRGGLGKLSIRGSNSVRGITNVGLSAVAHGCPSLRVLSLWNVPSIGDEGLLEVARECHSLEKLDLSHCRSISNKGLVAIAENCPSLTSLTIESCPNIGNEGLQAVGKYCTKLQSLTIKDCPLVGDQGVASLLSSGASMLTKVKLHGLNITDFSLAVIGHYGKLITSLNLCSLRNVSQKGFWVMGNAQGLQSLVSLTITLCQGATDVGLEAVGKGCPNLKYMCIRKCCFVSDGGLVAFAKEAGSLESLILEECNRITQVGILNAVSNCRKLKSLSLVKCMGIKDLALQTSMLSPCESLRSLSIRSCPGFGSSSLAMVGKLCPKLHQLDLSGLCGITDAGLLPLLENCEGLVKVNLSDCLNLTDQVVLSLAMRHGETLELLNLDGCRKVTDASLVAIADYCPLLIDLDVSKSAITDSGVAALSRGVQVNLQVLSLSGCSMVSNKSVLSLKKLGENLLGLNLQHCSVSCSSVELLVEALWRCDILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83105" stop="82788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVYIRGYLILQCLGCFPGRYGIHLFPTIFCRASSNRNPVSAIFGDLPPSCHGLLRIQSPSTEIKIFTHAAPREPGGLNHSAKTAIDKIHRAFASFVLSYIAGIRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="88217" PGL_stop="87629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88217" e_stop="87629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88217" e_stop="87629" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88217" stop="87629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATA</gDNA_template>
            <first_frame> N  T  I  I  Q  Y  M  K  K  I  F  S  D  I  *  L  T  I  I  S  M  F  *  Q  C  *  I  *  *  Y  F  N  *  Y  E  *  K  F  *  H  I  L  F  M  C  I  L  I  I  T  K  K  Y  F  Y  Y  N  N  V  P  *  I  N  *  S  D  Q  *  I  R  *  F  T  L  *  N  Y  K  N  I  V  F  R  M  S  K  L  T  W  C  Q  F  G  L  P  I  I  H  L  P  R  V  Q  M  W  Y  F  S  L  F  I  L  S  V  I  D  V  F  L  D  *  I  F  K  F  F  N  K  F  E  I  I  L  K  I  Y  N  I  I  K  L  L  Y  F  K  E  D  K  L  A  R  Y  N  H  F  Y  I  V  I  I  N  T  H  M  K  *  N  *  Y  *  T  *  V  T  F  R  D  *  S  L  Y  *  Y  M  F  C  *  L  K  I  K  M  Y  L  I  N  </first_frame>
            <second_frame>  T  L  *  Y  S  I  *  K  K  F  L  A  I  F  S  *  R  *  L  A  C  F  S  N  A  K  F  N  N  I  L  I  N  M  N  K  N  F  S  I  F  Y  L  C  V  Y  *  L  S  L  K  N  I  F  I  T  I  T  Y  H  E  L  I  N  R  T  N  E  Y  V  D  S  H  Y  K  I  T  K  I  *  C  F  E  C  L  N  *  H  G  A  N  L  D  F  Q  L  F  I  F  H  A  F  K  C  G  I  F  L  F  S  Y  *  A  L  S  M  Y  F  *  I  K  F  L  N  F  S  I  N  L  R  L  F  *  K  Y  I  I  L  L  N  C  Y  I  L  K  R  I  N  *  R  D  I  I  I  S  T  *  L  S  L  I  H  I  *  N  K  I  S  T  R  R  E  *  H  F  V  I  K  V  F  I  N  I  C  F  V  N  *  K  L  K  C  I  *  *  I </second_frame>
            <third_frame>   H  Y  N  T  V  Y  E  K  N  F  *  R  Y  L  V  N  D  N  *  H  V  L  A  M  L  N  L  I  I  F  *  L  I  *  I  K  I  L  A  Y  F  I  Y  V  Y  I  D  Y  H  *  K  I  F  L  L  Q  *  R  T  M  N  *  L  I  G  P  M  N  T  L  I  H  I  I  K  L  Q  K  Y  S  V  S  N  V  *  I  N  M  V  P  I  W  T  S  N  Y  S  S  S  T  R  S  N  V  V  F  F  S  F  H  I  K  R  Y  R  C  I  F  R  L  N  F  *  I  F  Q  *  I  *  D  Y  F  K  N  I  *  Y  Y  *  I  V  I  F  *  R  G  *  I  S  E  I  *  S  F  L  H  S  Y  H  *  Y  T  Y  E  I  K  L  V  L  D  V  S  D  I  S  *  L  K  S  L  L  I  Y  V  L  L  I  K  N  *  N  V  F  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0146I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="91287" PGL_stop="92236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91287" e_stop="92236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="91287" e_stop="92236" e_length="950"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91287" stop="92177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91951" stop="92236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACGTGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTACTTTGAGTTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATATTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGAGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAAGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTATTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATGGTTAGAACTAGAGCAACAACTACGCCAACACTAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> *  Y  T  *  F  P  N  E  Y  G  V  E  A  *  A  L  M  D  E  L  D  G  T  Y  *  *  L  *  Y  L  L  L  L  R  V  E  F  Y  S  *  F  T  I  I  F  D  I  Y  C  S  L  L  *  V  D  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  Y  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  S  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  L  R  H  G  L  A  S  Y  V  F  L  A  F  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  V  D  G  *  N  *  S  N  N  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  N  I  L  N  S  Q  M  S  M  V  L  R  L  E  P  S  W  M  N  L  M  V  L  I  D  D  Y  S  T  C  C  C  Y  V  L  S  F  I  V  D  L  R  *  Y  L  I  Y  T  V  P  Y  F  E  L  T  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  I  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  F  I  N  E  F  K  S  S  A  L  L  S  V  A  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  K  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  I  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  *  M  V  R  T  R  A  T  T  T  P  T  L  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   I  Y  L  I  P  K  *  V  W  C  *  G  L  S  P  H  G  *  T  *  W  Y  L  L  M  I  I  V  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  N  I  *  Y  I  L  F  P  T  L  S  *  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  I  F  F  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  E  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  P  P  A  W  T  S  F  L  C  I  F  S  F  *  K  L  L  E  L  V  V  *  S  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  S  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  F  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  L  R  Q  H  *  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0146I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="94952" PGL_stop="92243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94952" e_stop="92243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="94952" e_stop="92243" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94952" stop="94240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94432" stop="93774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93960" stop="93630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93753" stop="93196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93749" stop="92314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92675" stop="92243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAATCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCTTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  I  H  Q  A  H  E  R  S  R  G  I  R  *  T  K  R  H  H  *  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  I  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  N  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  W  F  E  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  I  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  F  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  *  Y  G  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  R  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  D  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  S  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  N  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  N  L  T  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  K  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  L  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  T  C  P  V  V  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  I  S  L  F  C  T  F  S  V  S  P  S  S  P  S  L  I  T  S  S  V  S  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  Q  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  Q  L  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  K  N  S  *  C  P  Y  L  V  R  K  V  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  T  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  S  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  L  D  A  S  A  S  D  R  P  G  K  G  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  W  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  I  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  A  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  F  P  N  P  A  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  D  E  F  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  T  *  L  A  L  G  S  R  T  H  L  F  F  Y  P  S  K  F  G  G  Y  T  S  P  *  I  S  *  R  R  R  P  K  L  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  I  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  C  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  H  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  P  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  Y  F  A  L  F  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  S  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  N  C  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  L  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  H  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  K  I  R  N  A  H  T  S  F  E  K  *  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  N  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  L  V  R  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  N  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  L  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  I  I  R  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  *  M  P  P  L  Q  T  A  Q  G  K  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  G  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  L  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  R  T  L  P  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  T  N  S  L  L  R  T  K  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  Q  P  N  L  L  *  A  Q  E  L  I  S  F  S  I  P  Q  S  S  G  D  I  L  L  H  K  *  A  R  E  G  G  P  S  Y  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  S  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  M  P  C  S  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  R  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  H  F  L  I  L  H  F  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  Q  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92721" stop="92428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLITCHYMPCSQTRKCAYFQWNIHAGSHSSRMLYLRSLRCWCRKHRGCLALIRQPAKISQNLIDHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93682" stop="93413"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVDPGSNNTEAMQSQTRRLPVMTALDASASDRPGKGNNGPYRSSVRCPYHVVMWWPQFAHYLCRFGDHHYLDHHVLQINGLYHDHLYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93522" stop="93268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGGPSLPITSAVLVTTITSTTTSSRLTASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVKHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94225" stop="93980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKSKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92441" stop="92244"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGISLFCTFSVSPSSPSLITSSVSGGVTALVSDGLGARPLPLEDVLPRPLPQPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94756" stop="94559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITKNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93212" stop="93018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFNVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="92937" PGL_stop="94380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92937" e_stop="93109"/>
            <exon e_start="93853" e_stop="94380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="92937" e_stop="93109" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93110" i_stop="93852" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="93853" e_stop="94380" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92937" stop="93109"/>
              <exon start="93853" stop="94380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  S  *  V  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  S  R  A  N  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  R  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  R  T  R  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  V  R  L  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  V  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  L  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  L  V  L  K  S  E  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  K  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  S  N  Q  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  F  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92938" stop="93109"/>
                    <exon start="93853" stop="94379"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVRLSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLDFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGVPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96343" PGL_stop="96167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96343" e_stop="96167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="96343" e_stop="96167" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96343" stop="96167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  *  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  L  L  K  V  G  N  Y  L  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  L  F  A  Q  T  D  R   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  C  *  R  *  E  T  I  S  M  A  T  K  L  Y  H  T  C  M  K  H  I  L  Q  H  L  N  C  S  L  R  L  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0146I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="109270" PGL_stop="109561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109270" e_stop="109561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="109270" e_stop="109561" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109270" stop="109561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAACTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  N  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  D  Q  R  Q  R  Q  F  T  R  N  C  *  D  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  I  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  T  *  T  C  M  V  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  I  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  F  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  F  T  C  G  L  R  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  L  R  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0146I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115969" PGL_stop="115162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115969" e_stop="115162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="115969" e_stop="115162" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115969" stop="115162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATTTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTTTACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  Y  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  F  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  F  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  L  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115967" stop="115164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSFKPIDTPSAANIHLTAMFALQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="116628" PGL_stop="115980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116628" e_stop="115980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="116628" e_stop="115980" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116628" stop="115980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0146I19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116627" stop="115980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="119365" PGL_stop="119656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119365" e_stop="119656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="119365" e_stop="119656" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119365" stop="119656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGATTTTGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGATCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAGATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  F  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  D  Q  R  Q  R  Q  F  T  R  N  C  *  D  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  I  L  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  V  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  I  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  F  W  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  F  T  C  G  L  R  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  L  R  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0146I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 77568 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2983 bytes was the average size of a spliced alignment
$ 26672 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1481 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:46:37
-->
