<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:45:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309653" ref_strand="+" ref_description="SGN-E309653 [cLEY-26-J8]">
      <seq>acacattcgcagttttcatactggtggttgctaaatttcccaacatgcacaaggttcgaatatttgggatcaatgcagatcaatgaagtacttcattcaatttgaaattttagttccaactttactctcagctatatagtaagtatttgattggttttaacaattttgagtaaacagggaactcctgtacaaatgcaacaacttcaaagggtgaaattatatatatagtaaaaagattaagagccgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="2517" stop="3363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2817" g_stop="3062" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="247" polyA_stop="257"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E309653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2817" e_stop="3062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTCGCAGTTTTCATACTGGTGGTTGCTAAATTTCCCAACATGCACAAGGTTCGAATATTTGGGATCAATGCAGATCAATGAAGTACTTCATTCAATTTGAAATTTTAGTTCCAACTTTACTCTCAGCTATATAGTAAGTATTTGATTGGTTTTAACAATTTTGAGTAAACAGGGAACTCCTGTACAAATGCAACAACTTCAAAGGGTGAAATTATATATATAGTAAAAAGATTAAGAGCCG</genome_strand>
        <mrna_strand>ACACATTCGCAGTTTTCATACTGGTGGTTGCTAAATTTCCCAACATGCACAAGGTTCGAATATTTGGGATCAATGCAGATCAATGAAGTACTTCATTCAATTTGAAATTTTAGTTCCAACTTTACTCTCAGCTATATAGTAAGTATTTGATTGGTTTTAACAATTTTGAGTAAACAGGGAACTCCTGTACAAATGCAACAACTTCAAAGGGTGAAATTATATATATAGTAAAAAGATTAAGAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543346" ref_strand="+" ref_description="SGN-E543346 [TUS-65-B21](-)">
      <seq>ggaaaggatcctccgtcttggaagtggtggcagcctttgagaaggcctcaggaaagaaaattcccctggtgatgtctggtcgaagacctggggacgctgaaattgtttacgccgcaccagagaaaccagaacgagaattgaattggggggctaaatatggcattgaagatatgtgccgggatcagtggaactgggccagtaaaaacccctccggctatgaaggatcgaaggaatcaaagtgatagagttcagtatgctccttttaaccgcatgttttttaatggtcccatcattccccccgtgggttcgattcattttttttgctaatccccaacgtgtaggccatcagttttttttttcagagtaaggattccgcgtatatttctaggatcatagaatgctcggaatatttatatttttctaacttgaagttttgaagcgaggggaatgttttccatcgcgaagaaaaagggatagttgatgaataatagctcatttagctgaaatctaaagggccattttattcgttcttttattcttttggaactagcagccctccaatcatattgtttaaagattctaattcccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="54295" stop="29506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53995" g_stop="53940" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527">
            <donor d_prob="0.936" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53412" g_stop="53321" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="148" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53192" g_stop="52754" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="587" r_length="439" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52753" i_stop="49021" i_length="3733">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49020" g_stop="48965" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="643" r_length="56" r_score="0.679"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E543346" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53995" e_stop="53940"/>
          <exon e_start="53412" e_stop="53321"/>
          <exon e_start="53192" e_stop="52754"/>
          <exon e_start="49020" e_stop="48965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAGGTAGTGTACTTTTACATTCATCCTTGGGCGTCTCTGTGGAAAAGACTTTTATAAATGGAAAGAGAGACATATGACACATTTGAGCAAGAGCCTTTGCTTGTTATCCAAATAGAAGTACCTATTATTTTTTTTATTGCTAATTTTAATAACAGTGAGCCTGATTCTTATCTGAGATTGAATTATAATGAAATAGATTGGCGTGGTGCATATTGAATAGTTTTTTAAGTTAAGCCTCTTTAGTGGAATGCTTGTTGTTTGATTTTCTGATCTGAGAGATGTATGCCTGCACATACGAAAAGAGCCTCTAGAGTTGCTTTCCAGTTCTTCTCATCTGATATGTCTCTTATAATCTGAAAGGCTCCCTTTGGTTCACACATAATTCCGGCTCTGTTTAATCTCCTCACTGTACATTTCTGACCTGTCACTTTCTGCGAAAAGACTTTGCTAACAATGGAACAGACTAATTGTAATTGTAACACTAATTAGTATTCCTGGTGCACTGACTACTTCTTGTTCTGCTTTACTAGAAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAGGTAAGTGATAATTACAAATGTATCACTTTTTCAATTGTCTGATTGCTGCTAACCAATCTAACGACTTAAGAACTTTCCTGCCTCTCATTTCTCTATGACATATACTGATCTACCGGCTTATTTTTCAGGGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCACTGTAATCCTGTTAAGAAGAAGCAATGTGGTGGCTTATTATGTCTTCTTTCTTTTTAGTATATAGTTGGAAAGTGTATGAGAACATGTCTACAACTCACTGTTCATTAGAATATCTTATAAACCCCATGTGCAACTGTAGTATATTATCTGTCACCATTTATTAGTCCACTATCTCGAAAGTTTTCTAAATTATAATAATTTCGGATTTTTTAGAAACCCGTCAATGACTTGTTCCTTCGCCCAATACATAGCGAATGATAGATGAGTTATGTATCAGATACATAATTATAAATTATAATTAAATTAGATAGGGTTATGTATTAATAATAACATTTGTATTAGATTCATCGTATACAAATAAAGTAGTAATGCATCCTATAATGTTGGAGAATGGAAAAGGGATTTTTGTTATTAATTCGAATGATAGAAATTTTTAGAGATTATGTTAATTACATAATTTTTCCAAAAATAATATCTTTTCTTTTACTTGGCTCATGTTTCATCAATTCCTTGTATATATGAGACTCAAAAAAAAATACGTCTCCAACTTAGGATCTGTACACGTACCGTAATTAAGAAAATAAAGAATATTTTTTGAAAAAAATTCGATCTTAAATTAAAGATATATTAATATTCAAATATATTGTAGTCTTTAACTCTTAAAAAATGACAGAGTTATGATTTTTGATAAGGTAAACACACAAACTAACCGAATGAGATTCGATATCTGTAATATATACATATAATTTTAAATATGTATAAATAGTAATATTTTTCGCCGAAGGAAGTTTAGATGAACCATCTAACAGTTTGTTGGCTCCGTCCCTGCTCTTAAACATGTCGCGTCAAAAATTAAAATTAAAGAATCATAAAAAGAAACATGTTTTTATACGAACTACAGTTTATGGTATATCAGTTACTCAAACACTAGTTGTGAATCTTGAGCTTCAGTTGTCAGCACAAAGCTTGGAAACATTTGAGTTATTTCCCTGAAATGTCAACAACAACATCTAGTTATAAAATCTTGTCAATGAACTTTTCGCGAGTTTCACACCCCAACTGTCAGTTGTTCTCGTTAGTACTAGAACTATTACGATCTCTGTATTAAAACACACCTCGAAGCTGATTAGAGTTAGACCAACTATTAATGATAGTAGTTGGTCTAATCAGCTTCGAGGTGTGTTTTAATACATAGATGGTGATAGTTTAGGTAGAAAAAAAGGAGTGACACTCGCGAAGAAACGATGTGTTTTCGACCATTATTTCTTCAATCTTAGATAAACAGAATTTCCAACTTACTTTAGGAATGGTAGAGTCATGTTCTTGATGATAGAAGGATATCTTATGACCAATTCCTTCCACTCTTCTAGATCGATCCTTCCATCTCCTTTCGTATCAGCCTCTACGAATGTCTGTTTATTATATCATCGACATCAGATATCGAAAACTATACAGAATGCATGACTAACAAGAGAGTAAAGTGATCACACTCTTCTGCACCTTATCAACAATTGCCTCGATAGCATCATCTGGAAGTATCAATTTTGATTCCTTCAGTATAGCAAATACCATTTCCTTCAACTACAAGTTCAACAGTATTAATAGTAATGCAGAAGTATAACAATGACTGTAATCAACACTTTGTGTCAAGAGCATTCTGTACTATTAACCGTGCACCACTAGTCCTCGAGGATTTCTGAGTTAAAAACAACAAAAACAAACCCAGTGTGATCCTACAGGTGGGGTCTAGGCAGGGTGTGTGCGTGTGGTGTGTACACAGCCTCACCCTTACCTTGTCAAAGGTAGAGAGATTGTTTCTGATAGACTCTCGACTCAAGTAAAACATATCAAACTTGAGTAGATATGGAAAAGAAATGTAGTAACGAAGAAGTCATGTTAAAAAAGTAACAGTAACAACAACAAACAAGGCGTAACTGAGATAAAGGAAACAACAGGTGAATAATCGAAGAATGGGGGAAACTAGACAACGCTCAAATACCTACTAACATATTTCTATAGAGGTTACTCACCTCATCGCGTTCTATGAATCCAGTGTGCCTCAAGTCGTACAATTTAAATGCAACTGAAACAAAATCATGCCTGAAGTTAGTATCAGCTATACTTAAATGTCTAACATGTTCCTCTACTTTTAAGCACAAGAATATACGGCTTATAAAAGAAATCTCGAACATATTTCTTACATTCAATTTTGTCTGCTTGAGGAGTCCTTGGATGGAATATGCTTAATGACCGAACAAATTCTCCAAACTCAATAACTCCGTTATGCTTAATATCAAACAAATCAAACAACTGCAACAGAAGGAACAGATTCATGTTTGGAGAACGAGAAAGATCAATATAGCAACTGTTGGAACTGCTGATGGAGTAACGGCATTGAGTTTGCAAGTTGTGTGGTACAGATAGTCAAATTTCATCAATCACTGGCAAACAAATGTTCAATAAGTTATATCAAAGAGGATGGAAACACGTACTCTCTGTGCGAAAAGATTCTGCTTAAGGCTACAGTTGAAGAGTGCGAGGAGAAACTCTTCCTGCATAGAAGAAAATAGAATCAAATCTATCTCACAACGGTCTACTGTAAACACAACCTTATCTTGCATTACTGTTTCCACAGCTCGAACCAGTGACCTCCTGTGAATTTAACGCAAAAGTCTAGCTAATGATTGAACTCTTACCTTATGAATAAGACCATCATCAATTATGGAGCTGCTAAGTTTTTCATACAGAACATACAATGCATCCACTTCATTAACAGAAACTGCAACACAAGACCAAAGCACTCTTAAGATTCTTAATTACACAGCTTAACAAACGAAAAAAAGTCATTGACACATACACACACACACTACTATGCTTGAACATAATCAAGTGGTTGTTTTCGATAGACTCTCAGCTCAAGAAAACATAACGAAAGTGAAAAAGCATGGCAAAAACACTACAGAAAAACATGACAACAAAACATTTGTACGTACACAGTAATAACAACAAAATAATATGATAATCGAAGTACAAGAAACTACAGAAGCAATGCTACGACTACTAGTATAGAAGTATACGCGAGAAGTTCAAGGCAAAAGATGCATTCTTTAACTCACATGAAGTCTCAGAAGCTAGTAAGTCATGGTTCTCGAAACCAGGTGGACGTCTTGACGTCAGGGAACGAAAACAGCCCTTTAAAGCAAGCATTGTCCCTGCAGAGGATTCAAAGATATAGAAATATTTAAATGTTCACTTGCCACACATCCAACACCAATATTATAGTGAGGCATTGGTTCTTGAAAAGATTCTGATTCAACTGAGGCAGATCTACAGAGTAAATTCAACTGTATACTTGAACCAAATACCCTATACAACATATCAAAAATTGAAATATATACATACATATTATAACAAAAATTGCTTTTAGCAGCAATAAGTTAATAGAGAAGAGCTTATTATCTTTACCAGTCATTAGATTCAATGTTACTATACACTTTACATTTATAAAATGTGTTAATTTTCTCTAAAAATACATATTTAATCGCAATTAAGCTATTGGTGTTCATTTCTTTTCCATTAAAGATCATTTTTTTTGGAGTAACAAAGGAAAAAACACCCATTGTAGACCACTCAAGCTAAATCAAAAGATGTAGGGACCCAAAAAAGATAAAAAGCACAAAATGTCAAAACCATTTTCACTTAAAAAGTATATACCAAAAATACACCAGAGAAAAAAGAAAAAAAAAACCCTAAT</genome_strand>
        <mrna_strand>GGAAAGGATCCTCCGTCTTGGAAGTGGTGGCAGCCTTTGAGAAGGCCTCAGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCCCTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTTTACGCCGCACCAGAGAAACCAGAACGAGAATTGAATTGGGG................................................................................................................................GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTCCGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACCGCATGTTTTTTAATGGTCCCATCATTCCCCCCGTGGGTTCGATTCATTTTTTTTGCTAATCCCCAACGTGTAGGCCATCAGTTTTTTTTTTCAGAGTAAGGATTCCGCGTATATTTCTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTTTGAAGCGAGGGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTAAAGGGCCATTTTATTCGTTCTTTTATTCTTTTGGAACTAGCAGCCCTCCAATCATATTGTTTAAAGATTCTAATTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572397" ref_strand="-" ref_description="SGN-E572397 [31544]">
      <seq>gaaaagatcatcagtcttggaattgttgcagcatttgagaaggcatcaggaaagaaattccactggtgatgtctggtcgaagacctggggatgctgaaattgtatacgcagcaacagagaaagcagaacgagaattgaattggagggctaaatatggcattgaagatatgtgccgggatcagtggaactgggccagtaaaaacccctacggctatgaaggagtcgaaggaatcaaagtgatagttcagtatgctccttttaactgcatgtttttttaatggtctcatcattccacctgttggttcgactgctaatcaacaacgtgtagaccatcaatcttttctttctggggtaaggattccgcgtatattactaggatcatagaatggtcggaatatttatatttttctaactggagttctgaagcgagtggaatgttttccgtcgtgaagaaaaagggatagttgatgaataatagctcatttagctgaaacctatagtgacattttattcgttcttttattctttgtaactagcagcagtgcaatcatattgtttaaagattctaattacattatttatgcttttgattattctatgttggttcactgtaaaacctgttaagaagaagcaatgtgatggcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="54294" stop="52380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53994" g_stop="53940" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53412" g_stop="53321" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="145" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53192" g_stop="52680" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="649" r_length="504" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E572397" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53994" e_stop="53940"/>
          <exon e_start="53412" e_stop="53321"/>
          <exon e_start="53192" e_stop="52680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAGGTAGTGTACTTTTACATTCATCCTTGGGCGTCTCTGTGGAAAAGACTTTTATAAATGGAAAGAGAGACATATGACACATTTGAGCAAGAGCCTTTGCTTGTTATCCAAATAGAAGTACCTATTATTTTTTTTATTGCTAATTTTAATAACAGTGAGCCTGATTCTTATCTGAGATTGAATTATAATGAAATAGATTGGCGTGGTGCATATTGAATAGTTTTTTAAGTTAAGCCTCTTTAGTGGAATGCTTGTTGTTTGATTTTCTGATCTGAGAGATGTATGCCTGCACATACGAAAAGAGCCTCTAGAGTTGCTTTCCAGTTCTTCTCATCTGATATGTCTCTTATAATCTGAAAGGCTCCCTTTGGTTCACACATAATTCCGGCTCTGTTTAATCTCCTCACTGTACATTTCTGACCTGTCACTTTCTGCGAAAAGACTTTGCTAACAATGGAACAGACTAATTGTAATTGTAACACTAATTAGTATTCCTGGTGCACTGACTACTTCTTGTTCTGCTTTACTAGAAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAGGTAAGTGATAATTACAAATGTATCACTTTTTCAATTGTCTGATTGCTGCTAACCAATCTAACGACTTAAGAACTTTCCTGCCTCTCATTTCTCTATGACATATACTGATCTACCGGCTTATTTTTCAGGGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGA-TCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATG-TTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTC-AGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGC-TTTGATTGATTAATTTTGGTTCACTGT-AATCCTGTTAAGAAGAAGCAATGTGGTGGCTTATTA</genome_strand>
        <mrna_strand>GAAAAGATCATCAGTCTTGGAA-TTGTTGCAGCATTTGAGAAGGCATCAGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGATGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAG................................................................................................................................GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGAGTCGAAGGAATCAAAGTGAT--AGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTTAATGGTCTCATCATTCCACCTGTTGGTTCG----A------CTGCTAATCAACAACGTGTAGACCATCAATCTTTTCTTTCTGGGGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGGTCGGAATATTTATATTTTTCTAAC-TGGAGTTCTGAAGCGAGTGGAATGTTTTCCGTCGTGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAACCTATAGTGACATTTTATTCGTTCTTTTATTC-TTTGTAACTAGCAGCAGTGCAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTTGATTATTCTATGTTGGTTCACTGTAAAACCTGTTAAGAAGAAGCAATGTGATGGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236884" ref_strand="+" ref_description="SGN-E236884 [cLEL-7-C2](-)">
      <seq>gctaaatatggcattgaagatatgtgccgggatcagtggaactgggccagtaaaaacccctacggctatgaaggatcgaaggaatcaaagtgatagagttcagtatgctccttttaactgcatgttttttaatggtcccatcattccacctgttggttcgattcatcttctctgctaatcaccaacgtgtagaccatcagtcttttctttcagagtaaggattccgcgtatattactaggatcatagaatgctcggaatatttatatttttctaacttgaagttctgaagcgagtggaatgttttccatcgcgaagaaaaagggatagttgatgaataatagctcatttagctgaaatctatagcgacattttattcgttcttttattcttttgtaactagcagcactacaatcatattgtttaaagattctaattacattatttatgctttgattgattaattttggttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="53491" stop="52420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53191" g_stop="52720" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="488"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E236884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53191" e_stop="52720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCA</genome_strand>
        <mrna_strand>GCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237109" ref_strand="+" ref_description="SGN-E237109 [cLEL-7-E18](-)">
      <seq>aatcaaagtgatagagttcagtatgctccttttaactgcatgttttttaatggtcccatcattccacctgttggttcgattcatcttctctgctaatcaccaacgtgtagaccatcagtcttttctttcagagtaaggattccgcgtatattactaggatcatagaatgctcggaatatttatatttttctaacttgaagttctgaagcgagtggaatgttttccatcgcgaagaaaaagggatagttgatgaataatagctcatttagctgaaatctatagcgacattttattcgttcttttattcttttgtaactagcagcactacaatcatattgtttaaagattctaattacattatttatgctttgattgattaattttggttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="53409" stop="52420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53109" g_stop="52720" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="406"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E237109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53109" e_stop="52720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCA</genome_strand>
        <mrna_strand>AATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409849" ref_strand="+" ref_description="SGN-E409849 [PPI-15-A22]">
      <seq>tgacagtttatggaactgattatccaacaaaggatggcactgcggtacgtgattacattcatgttgttgatttagcggatggccatattgctgccttgcgtaagctgtttgatccttcgacaggttgtgaagtttacaacctgggaactgggaaaggatcatcagtcttggaagtggtggcagcatttgagaaggcatcaggaaagaaaattccgctggtgatgtctggtcgaagacctggggatgctgaaattgtatacgcagcaacagagaaagctgaacgagaattgaattggagggctaaatatggcattgaagatatgtgccgggatcagtggaactgggccagtaaaaacccctacggctatgaaggatcgaaggaatcaaagtgatagttcagtatgctccttttaactgcatgttttttaatggtcctatcattccacctgttggttcgactgctaatcaccaacgtgtagaccatcaatcttttctttctggggtaaggattccgcgtatattactaggatcatagaatggtcggaatatttatatttttctaactggagttctgaagcgagtggaatgttttccatcgtggagaaaaagggatagttgatgaataatagctcatttagctgaaacctatagtgacattttattcgttcttttattctttgtaactagcagcagtacaatcatattggttaaagattctaattacattatttatgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="55437" stop="52438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55137" g_stop="55094" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55093" i_stop="54673" i_length="421">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54672" g_stop="54594" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="123" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54593" i_stop="54023" i_length="571">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54022" g_stop="53940" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="206" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53412" g_stop="53321" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53192" g_stop="52738" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="740" r_length="442" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E409849" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55137" e_stop="55094"/>
          <exon e_start="54672" e_stop="54594"/>
          <exon e_start="54022" e_stop="53940"/>
          <exon e_start="53412" e_stop="53321"/>
          <exon e_start="53192" e_stop="52738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCGGTATGGCCAAACTTTCATTAGCCAACACTTGGTGATAATTATTAATGTTTTAACTTTTGATAAGACTATTATGAGACAAGTATTTTTTGACTGTCAGAGTTGTTTGTTATCAGTGTTCTAGATTACGACAAAATTAGCTCACTTAAATTTAGAAATCTTTGACTAGCTACATGAAACTATGAATCCAAATGAATGTGGACTCATTGTCATCTTACAATTTTCCTGCTCTTTCTCACCCACGTACCTTGCAACAAAAATAGAAAAAGGATGTAAACTTTCTTTCTTACTCAACCATTAGTTAGCTTGTCGGAAAAAAACATCAAATCAAGGTGCACCAAGAGTTCTGTAGTTAAACTAATAGGAAGAAAACGTGGTTGTCTTTTGCCTGAACATGTGAGTGATCATTTACTGATATTTTCAGGTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTCGATCCTTCGACCGGTGAGTATTTGTTACTTCTTATGATTGTTACTTCTCTGTTTAAGTTATCTGGTGCTAATTTTCCCAGCAGCTTCGGAATCCATTACCACAAAGCTCTCGAACTTTTCGTTCTTGAAGACTGTTTTCCCTGATGTATATTTTTCAATTCTGCTGTTGGATTCTTGTTCTTACATTGGTGAAAGCACAAAGTTGTACTTTTCTATGTCGCCTTTCGTCCTTGTGTTCTCTAGACGTGGTTAAACATGACAGTGTCACTAATATCCCCAGACAAATATTATTATGTTAGAAATATCAAGTTTTGGTATTACATGGGGTATGATGTTGTTGTTGTAAGCATCAAGTTTTGATCATGATGTGATCAAATTCTTCTTCTAGGATGTTTCTGTTTAACTAGATCATGTTAGTTCTAGTGTGGCTTGTCTTTGCATTTCTGGAGCTATATCATTTGGATGTCTTTAAAGACACTTCTATTCTTGTTGGATGATAAAGTGATCATGACCTATCTAAGTGTAGGGGTAAAAGTTCTCTCTGCTTGATGTTGACTCTACCTATGTTTGCTTTAACATTTCAGGTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAGGTAGTGTACTTTTACATTCATCCTTGGGCGTCTCTGTGGAAAAGACTTTTATAAATGGAAAGAGAGACATATGACACATTTGAGCAAGAGCCTTTGCTTGTTATCCAAATAGAAGTACCTATTATTTTTTTTATTGCTAATTTTAATAACAGTGAGCCTGATTCTTATCTGAGATTGAATTATAATGAAATAGATTGGCGTGGTGCATATTGAATAGTTTTTTAAGTTAAGCCTCTTTAGTGGAATGCTTGTTGTTTGATTTTCTGATCTGAGAGATGTATGCCTGCACATACGAAAAGAGCCTCTAGAGTTGCTTTCCAGTTCTTCTCATCTGATATGTCTCTTATAATCTGAAAGGCTCCCTTTGGTTCACACATAATTCCGGCTCTGTTTAATCTCCTCACTGTACATTTCTGACCTGTCACTTTCTGCGAAAAGACTTTGCTAACAATGGAACAGACTAATTGTAATTGTAACACTAATTAGTATTCCTGGTGCACTGACTACTTCTTGTTCTGCTTTACTAGAAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAGGTAAGTGATAATTACAAATGTATCACTTTTTCAATTGTCTGATTGCTGCTAACCAATCTAACGACTTAAGAACTTTCCTGCCTCTCATTTCTCTATGACATATACTGATCTACCGGCTTATTTTTCAGGGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTC-AGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGA</genome_strand>
        <mrna_strand>TGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGTAAGCTGTTTGATCCTTCGACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCGCTGGTGATGTCTGGTCGAAGACCTGGGGATGCTGAAATTGTATACGCAGCAACAGAGAAAGCTGAACGAGAATTGAATTGGAG................................................................................................................................GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGAT--AGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCTATCATTCCACCTGTTGGTTCG----A------CTGCTAATCACCAACGTGTAGACCATCAATCTTTTCTTTCTGGGGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGGTCGGAATATTTATATTTTTCTAAC-TGGAGTTCTGAAGCGAGTGGAATGTTTTCCATCGTGGAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAACCTATAGTGACATTTTATTCGTTCTTTTATTC-TTTGTAACTAGCAGCAGTACAATCATATTGGTTAAAGATTCTAATTACATTATTTATGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467695" ref_strand="-" ref_description="SGN-E467695 [cSTB-1-F1]">
      <seq>aatcaaagtgatagttcagtatgctccttttaactgcatgttttttaatggtcctatcattccacctgttggttcgactgctaatcaccaacgtgtagaccatcaatcttttctttctggggtaaggattccgcgtatattactaggatcatagaatggtcggaatatttatatttttctaactggagttctgaagcgagtggaatgttttccatcgtggagaaaaagggatagttgatgaataatagctcatttagctgaaacctatagtgacattttattcgttcttttattctttgtaactagcagcagtacaatcatattgtttaaagattctaattacattaaaaaaaaaaaaaaaggaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="53397" stop="52450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53109" g_stop="52751" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="362"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E467695" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467695" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53109" e_stop="52751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTC-AGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATT</genome_strand>
        <mrna_strand>AATCAAAGTGAT--AGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCTATCATTCCACCTGTTGGTTCG----A------CTGCTAATCACCAACGTGTAGACCATCAATCTTTTCTTTCTGGGGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGGTCGGAATATTTATATTTTTCTAAC-TGGAGTTCTGAAGCGAGTGGAATGTTTTCCATCGTGGAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAACCTATAGTGACATTTTATTCGTTCTTTTATTC-TTTGTAACTAGCAGCAGTACAATCATATTGTTTAAAGATTCTAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367973" ref_strand="+" ref_description="SGN-E367973 [TUS-22-N7](-)">
      <seq>attacattcatgttgttgatttagcggatggccatattgctgccttgcggaagctgttcgatccttcgaccggttgtgaagtttacaacctgggaactgggaaaggatcatcagtcttggaagtggtggcagcatttgagaaggcatcaggaaagaaaattccactggtgatgtctggtcgaagacctggggacgctgaaattgtatacgcagcaacagagaaagcagaacgagaattgaattggagggctaaatatggcattgaagatatgtgccgggatcagtggaactgggccagtaaaaacccctacggctatgaaggatcgaaggaatcaaagtgatagagttcagtatgctccttttaactgcatgttttttaatggtcccatcattccacctgttggttcgattcatcttctctgctaatcaccaacgtgtagaccatcagtcttttctttcagagtaaggattccgcgtatattactaggatcatagaatgctcggaatatttatatttttctaacttgaagttctgaagcgagtggaatgttttccatcgcgaagaaaaagggatagttgatgaataatagctcatttagctgaaatctatagcgacattttattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="54965" stop="52516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54665" g_stop="54594" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54593" i_stop="54023" i_length="571">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54022" g_stop="53940" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="155" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53412" g_stop="53321" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="247" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53192" g_stop="52815" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="625" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E367973" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54665" e_stop="54594"/>
          <exon e_start="54022" e_stop="53940"/>
          <exon e_start="53412" e_stop="53321"/>
          <exon e_start="53192" e_stop="52815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTCGATCCTTCGACCGGTGAGTATTTGTTACTTCTTATGATTGTTACTTCTCTGTTTAAGTTATCTGGTGCTAATTTTCCCAGCAGCTTCGGAATCCATTACCACAAAGCTCTCGAACTTTTCGTTCTTGAAGACTGTTTTCCCTGATGTATATTTTTCAATTCTGCTGTTGGATTCTTGTTCTTACATTGGTGAAAGCACAAAGTTGTACTTTTCTATGTCGCCTTTCGTCCTTGTGTTCTCTAGACGTGGTTAAACATGACAGTGTCACTAATATCCCCAGACAAATATTATTATGTTAGAAATATCAAGTTTTGGTATTACATGGGGTATGATGTTGTTGTTGTAAGCATCAAGTTTTGATCATGATGTGATCAAATTCTTCTTCTAGGATGTTTCTGTTTAACTAGATCATGTTAGTTCTAGTGTGGCTTGTCTTTGCATTTCTGGAGCTATATCATTTGGATGTCTTTAAAGACACTTCTATTCTTGTTGGATGATAAAGTGATCATGACCTATCTAAGTGTAGGGGTAAAAGTTCTCTCTGCTTGATGTTGACTCTACCTATGTTTGCTTTAACATTTCAGGTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAGGTAGTGTACTTTTACATTCATCCTTGGGCGTCTCTGTGGAAAAGACTTTTATAAATGGAAAGAGAGACATATGACACATTTGAGCAAGAGCCTTTGCTTGTTATCCAAATAGAAGTACCTATTATTTTTTTTATTGCTAATTTTAATAACAGTGAGCCTGATTCTTATCTGAGATTGAATTATAATGAAATAGATTGGCGTGGTGCATATTGAATAGTTTTTTAAGTTAAGCCTCTTTAGTGGAATGCTTGTTGTTTGATTTTCTGATCTGAGAGATGTATGCCTGCACATACGAAAAGAGCCTCTAGAGTTGCTTTCCAGTTCTTCTCATCTGATATGTCTCTTATAATCTGAAAGGCTCCCTTTGGTTCACACATAATTCCGGCTCTGTTTAATCTCCTCACTGTACATTTCTGACCTGTCACTTTCTGCGAAAAGACTTTGCTAACAATGGAACAGACTAATTGTAATTGTAACACTAATTAGTATTCCTGGTGCACTGACTACTTCTTGTTCTGCTTTACTAGAAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAGGTAAGTGATAATTACAAATGTATCACTTTTTCAATTGTCTGATTGCTGCTAACCAATCTAACGACTTAAGAACTTTCCTGCCTCTCATTTCTCTATGACATATACTGATCTACCGGCTTATTTTTCAGGGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTC</genome_strand>
        <mrna_strand>ATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTCGATCCTTCGACCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAG................................................................................................................................GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408662" ref_strand="+" ref_description="SGN-E408662 [PPI-11-F20]">
      <seq>ggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaaccttttgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgttcagaaacctttgatgtactataacaacaatattacagggacaattaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcatcatcatctactgtctatggttggccaaaagaggttccttgtactgaggaatctcccataagtgctgcaaatccttatggaaggacaaagctcttcgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcatattgttgcggtacttcaatcctattggtgcacatccaagtggctgtattggtgatgatccacgtggaattccaaacaacctcatgccctttgttcaacaagttgctgttggcaggagaccagcactgacagtttatggaactgattatccaacaaaggatggcactgcggtacgtgattacattcatgttgttgatttagcggatggccatattgctgccttgcggaagctgttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56943" stop="54308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56643" g_stop="56514" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="180" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="316" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="418" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.809" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55094" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="646" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55093" i_stop="54673" i_length="421">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54672" g_stop="54601" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="719" r_length="73" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E408662" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56643" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55094"/>
          <exon e_start="54672" e_stop="54601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAACAAGTTGCTGTTGGCAGGAGACCAGCACTGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCGGTATGGCCAAACTTTCATTAGCCAACACTTGGTGATAATTATTAATGTTTTAACTTTTGATAAGACTATTATGAGACAAGTATTTTTTGACTGTCAGAGTTGTTTGTTATCAGTGTTCTAGATTACGACAAAATTAGCTCACTTAAATTTAGAAATCTTTGACTAGCTACATGAAACTATGAATCCAAATGAATGTGGACTCATTGTCATCTTACAATTTTCCTGCTCTTTCTCACCCACGTACCTTGCAACAAAAATAGAAAAAGGATGTAAACTTTCTTTCTTACTCAACCATTAGTTAGCTTGTCGGAAAAAAACATCAAATCAAGGTGCACCAAGAGTTCTGTAGTTAAACTAATAGGAAGAAAACGTGGTTGTCTTTTGCCTGAACATGTGAGTGATCATTTACTGATATTTTCAGGTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTG-TTCGATCCT</genome_strand>
        <mrna_strand>GGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTTTTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTTCAGAAACCTTTGATGTACTATAACAACAATATTACAGGGACAATTACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCATCATCATCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAATCTCCCATAAGTGCTGCAAATCCTTATGGAAGGACAAAG........................................................................................................................................................................................................................................................................................CTCTTCGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAACAAGTTGCTGTTGGCAGGAGACCAGCACTGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267440" ref_strand="+" ref_description="SGN-E267440 [cLEI-8-K18]">
      <seq>tgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcatattgttgcggtacttcaatcctattggtgcacatccaagtggctgtattggtgatgatccacgtggaattccaaaacaacctcatgccctttgttcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56955" stop="54864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56655" g_stop="56514" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="192" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="328" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="430" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55164" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="589" r_length="159" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E267440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56655" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCC-AAACAACCTCATGCCCTTTGTTCAACA</genome_strand>
        <mrna_strand>TGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCCAAAACAACCTCATGCCCTTTGTTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367974" ref_strand="+" ref_description="SGN-E367974 [TUS-22-N7]">
      <seq>ttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcatattgttgcggtacttcaatcctattggtgcacatccaagtggctgtattggtgatgatccacgtggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56894" stop="54894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56594" g_stop="56514" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="131" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="267" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55194" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="497" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E367974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56594" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAAT</genome_strand>
        <mrna_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356028" ref_strand="+" ref_description="SGN-E356028 [cLHT-21-F24]">
      <seq>ggacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccacaagcctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgagtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggaatctcccataagtgctgcaaatccttatggaaggacaaagctcttcgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcatattgttgcggtacttcaatcctataggtgcacatccaagtggctgtattggtgatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56913" stop="54904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56614" g_stop="56514" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="151" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="287" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="389" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.809" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55204" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="507" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E356028" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56614" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATC</genome_strand>
        <mrna_strand>GGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCACAAGCCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGAGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAATCTCCCATAAGTGCTGCAAATCCTTATGGAAGGACAAAG........................................................................................................................................................................................................................................................................................CTCTTCGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATAGGTGCACATCCAAGTGGCTGTATTGGTGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241798" ref_strand="+" ref_description="SGN-E241798 [cLED-27-A5]">
      <seq>ttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctggtatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtggtctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56894" stop="54960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56594" g_stop="56514" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="131" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="267" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55260" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="431" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E241798" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56594" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATT</genome_strand>
        <mrna_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGGTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGGTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236000" ref_strand="+" ref_description="SGN-E236000 [cLED-16-I4]">
      <seq>ttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattctgactttcaatggaaagtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56894" stop="54962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56594" g_stop="56514" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="131" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="267" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55262" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E236000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56594" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATA</genome_strand>
        <mrna_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTTTCAATGGAAAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240723" ref_strand="+" ref_description="SGN-E240723 [cLED-24-E11]">
      <seq>ttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattctgactctcaatggaaagtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56894" stop="54962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56594" g_stop="56514" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="131" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="267" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55262" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E240723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56594" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATA</genome_strand>
        <mrna_strand>TTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267397" ref_strand="+" ref_description="SGN-E267397 [cLEI-8-K7]">
      <seq>tgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaatcttgtgttctcttcatcgtctactgtctatggttggccaaaagaggttccttgtactgaggagtctcccataagtgctgcaaatccttatggaagaacaaagctctttgctgaagatatttgccgagatgtctaccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="56955" stop="54983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56655" g_stop="56514" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="192" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="328" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55703" g_stop="55602" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="430" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55321" g_stop="55283" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="469" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E267397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56655" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
          <exon e_start="55703" e_stop="55602"/>
          <exon e_start="55321" e_stop="55283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAATGTATTTCTTCTATACCCTTTTGCTTATCTTAATAATGCATTTTTTTTTCTTTGTTGCAACTTGTTATATTTACTGGTTTTATGTCTTCAACTATTCAGCTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAGGTATCTTTTTTGAGTTGTCTCGTCTGGTCATTTCAGTGTTCGGCCGGTTTAATGAAGCGGATATCTATGATTCTAAAATCTAAAAAGGGTATCTCATTGACTGCCCCCTCTATGTTGAGGCTGTTGAGCAGCCAAGTCTTATACCTTCCCTTGTCTTTTTCTTTTAACGGAGGGTGGGGCGTGGGGGGTGTTTGTGTTCTGTCTTTCCTGAATAACCAGAATTCTGGTTACATGTATGCTGTGTGTTTATTCTTAAAAGCTAAATAGATTCAATTTTCAGCTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCT</genome_strand>
        <mrna_strand>TGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT..................................................................................................CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG........................................................................................................................................................................................................................................................................................CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330139" ref_strand="+" ref_description="SGN-E330139 [cTOD-5-J9]">
      <seq>gaaacttccttcccacatggccatttttttcttccttaaaactattcgttgatttggtttctttacacccaatgacagagaagagctgacaatcttttttttttttctctctcacacaaatcatcattatataaagtagactttggactctgttacaagtccgaaaatatcagattttcattctctaacctcaaatcgaaccttttttttctttaatttttgggtttttttgttgtgatttggatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctggaagtcatggcaacgcgtggatgcaaaaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57243" stop="55500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56943" g_stop="56514" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="480" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55802" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="617" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E330139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56943" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGC-AAAAAT</genome_strand>
        <mrna_strand>GAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548863" ref_strand="+" ref_description="SGN-E548863 [TUS-65-B21]">
      <seq>agtcactgtagtataaacagccgccgatgcaaaacttttttttcttgacagactgccgacgtgatgaaacttccttcccacatggccatttttttcttccttaaaactattcgttgatttggtttctttacacccaatgacagagaagagctgacaatcttttttttttttctctctcacacaaatcatcattatataaagtagactttggactctgttacaagtccgaaaatatcagattttcattctctaacctcaaatcgaaccttttttttctttaatttttgggtttttttgttgtgatttggatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgtccagaaacctttgatgtactataacaacaatattacaggtacaataaccctgctgggagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57308" stop="55524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57008" g_stop="56514" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="545" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55824" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="659" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E548863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57008" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACTGTAGTATAAACAGCCGCCGATGCAAAACTTTTTTTTCTTGACAGACTGCCGACGTGATGAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCAT</genome_strand>
        <mrna_strand>AGTCACTGTAGTATAAACAGCCGCCGATGCAAAACTTTTTTTTCTTGACAGACTGCCGACGTGATGAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGGAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358765" ref_strand="+" ref_description="SGN-E358765 [cLHT-24-A12]">
      <seq>agaagagctgacatcttttctttttttttttctctcacaaatcatcattatataaagtagactttggactctgtttcaagtccgaaaatatcagattttcattctctaacctcaaatcgaaccttttttttcttgaattttttgtttttttttttgtgatttagatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaacctattgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaaagcagtgggtgaaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57165" stop="55587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56514" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="401" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55887" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="452" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E358765" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGT</genome_strand>
        <mrna_strand>AGAAGAGCTGAC-ATCTTTTCTTTTTTTTTTTCTCTCACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTTCAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTGAATTTTTTGTTTTTTTTTTTGTGATTTAGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444079" ref_strand="+" ref_description="SGN-E444079 [cSTA-41-E12]">
      <seq>cttccttcccacatggccatttttctcttccttaaaattattctttgatttgtattctttacacccaatgacagagaagagctgacatcattctttttctcacaaatcatcattatttaaagtagactttggactctgtttcaagtccgaaaacatcagattttcattctctaacctcaaatcgaacctctttttcttgaatttttggtttttttttttattgtgatttggatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaggaacttgcgggtcgatttgggtctaaccttttgttttacaatattgatctgcgtgataagcctgcagttgaaaagcttttcgagtctaacaagtttgatgctgttatacattttgctggactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57239" stop="55853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56939" g_stop="56514" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="468" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55937" g_stop="55905" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="501" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E444079" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56939" e_stop="56514"/>
          <exon e_start="56233" e_stop="56184"/>
          <exon e_start="55937" e_stop="55905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGG---GTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTAAGTTCTGTACAACCTTCTTCTTTATTGATTACTGTTGTGTTGTTATTCTAGCTCGTGTTGTTTTTGTACACAGTGCAGTATGCTGAAAACTTGATAATCATGATGAATTGTGTACTTGTTTATCGGAAAATTTGGTCTTGTCTGGCATTTTCCAACATGATAGTTGTGTGTTTATATTTGGGTATCGGCTTCCTTGCTTTGCTTTCTTTCTTTAGTTCAGCATCTATTACATATGTAATGCAGGTTTGATGCTGTTATACATTTTGCTGGACTAAA</genome_strand>
        <mrna_strand>CTTCCTTCCCACATGGCCATTTTTCTCTTCCTTAAAATTATTCTTTGATTTGTATTCTTTACACCCAATGACAGAGAAGAGCTGAC-ATC--ATTCT-TTTT--CTC--ACA-A-ATCATCATTATTTAAAGTAGACTTTGGACTCTGTTTCAAGTCCGAAAACATCAGATTTTCATTCTCTAACCTCAAATCGAACC-TCTTTTTCTTGAATTTTTGGTTTTTTTTTTTATTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTTTTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA......................................................................................................................................................................................................................................................GTTTGATGCTGTTATACATTTTGCTGGACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439046" ref_strand="+" ref_description="SGN-E439046 [cSTA-10-P15]">
      <seq>aaacttccttcccacatggccattattctcttccttaaaactattctttgatttgtattctttacacccaatgacagagaagagctgacatcattctttttctcacaaatcatcattatataaagtagactttggactctgtttcaagtccgaaaacatcagattttcattctctaacctcaaatcgaacctctttttcttgaatttttggttttttttttattgtgatttggatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcacacggtgttacagttgctgttgggtggttataagacagtggtggttgataatttggataattcatctgcaattgcaatcaaaagggttcaagaacttgcgggtcgatttgggtctaaccttttgttttacaatattgatctgcgtgataagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57242" stop="55912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56942" g_stop="56514" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280">
            <donor d_prob="0.545" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56233" g_stop="56212" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="442" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E439046" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56942" e_stop="56514"/>
          <exon e_start="56233" e_stop="56212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGG--GTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAATGTGGGTTCTTTTTCTCTTTTGAATCGATGATTTTATTTGGTGTGTCTGGATGTAAAGATTGGGTTGGAAATTGTTGCATCTGTGTTCTTATAATGGGTGTTGATTTGGGTCTATCGTGATTTTTTTTCTTTCGATGTGAACTTTTGAATTCAGATATGTGGTAGGATTTGGTACTTTTCTGCTCTGTGATATGTTTGTAGAGTGTTTCGTAGTGTCAAGCTTTTGATTGCTGTTTCATTCTGTTCCTGATTTCTATGGTTTTTGTTGTTTTGAACGTCAGATTGATCTGCGTGATAAGCCTG</genome_strand>
        <mrna_strand>AAACTTCCTTCCCACATGGCCATTATTCTCTTCCTTAAAACTATTCTTTGATTTGTATTCTTTACACCCAATGACAGAGAAGAGCTGAC-ATC---AT-TCTTTT-TC--TCAC--AAATCATCATTATATAAAGTAGACTTTGGACTCTGTTTCAAGTCCGAAAACATCAGATTTTCATTCTCTAACCTCAAATCGAACC-TCTTTTTCTTGAATTTTTGGTTTTTTTTTTATTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAAGAACTTGCGGGTCGATTTGGGTCTAACCTTTTGTTTTACAAT........................................................................................................................................................................................................................................................................................ATTGATCTGCGTGATAAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467694" ref_strand="+" ref_description="SGN-E467694 [cSTB-1-F1]">
      <seq>ttccttcccacatggccatttttttcttccttaaaaatattctttgatttgtattctttacacccaatgacagagaagagctgacatcattctttttctcacaaatcatcattatataaagtagactttggactctgtttcaagtccgaaaacatcagattttcattctctaacctcaaatcgaacctctttttcttgaatttttggtttttttttattgtgatttggatcaatgtcgaagaatatattggtgacgggtggagctgggtatattgggagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="57238" stop="56345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56938" g_stop="56645" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E467694" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56938" e_stop="56645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGG-GTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACA</genome_strand>
        <mrna_strand>TTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAAATATTCTTTGATTTGTATTCTTTACACCCAATGACAGAGAAGAGCTGAC-ATC--AT-TCTT-TT-TCTC--ACA-A-ATCATCATTATATAAAGTAGACTTTGGACTCTGTTTCAAGTCCGAAAACATCAGATTTTCATTCTCTAACCTCAAATCGAACC-TCTTTTTCTTGAATTTTTGGTTTTTTTTTATTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227439" ref_strand="+" ref_description="SGN-E227439 [cLEL-30-A5](-)">
      <seq>aatttaagtagtgatgataagtttttcagattctcctctcacatacaacttttactacacatagctgatcatgttaccgtgtgggttatgtataaacaaaaaaattccatcagtcttatggaatactaaacgacctcaactttatgatagggtctccacttttaacttcaatgtgcttcttgtattttatttctgctacatgacataagaaaacccacttctgcaggttgtatcctgttcaaaatgccgttaccagtatgagctcctttcaggcaatattgttagtatagagtcggaagattttaggttggttttctttaactactgtgtgatccagtagtcgtttgattgaagtggttttactttgttaaatcctcgattctgtaccaattatttcaatcatttcaccaaaaaagaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="67541" stop="66505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67241" g_stop="66805" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E227439" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67241" e_stop="66805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGTAGTGATGATAAGTTTTTCAGATTCTCCTCTCACATACAACTTTTACTACACATAGCTGATCATGTTACCGTGTGGGTTATGTATAAACAAAAATATTCCATCAGTCTTATGGAATACTAAACGACCTCAACTTTATGATAGGGTCTCCACTTTTAACTTCAATGTGCTTCTTGTATTTTATTTCTGCTACATGACATAAGAAAACCCACTTCTGCAGGTTGTATCCTGTTCAAAATGCCGTTACCAGTATGAGCTCCTTTCAGGCAATATTGTTAGTATAGAGTCGGAAGATTTTAGGTTGGTTTTCTTTAACTACTGTGTGATCCAGTAGTCGTTTGATTGAAGTGGTTTTACTTTGTTAAATCCTCGATTCTGTACCAATTATTTCAATCATTTCACCAAAAAAGAAACAAAAACTAAAAGAAAAA</genome_strand>
        <mrna_strand>AATTTAAGTAGTGATGATAAGTTTTTCAGATTCTCCTCTCACATACAACTTTTACTACACATAGCTGATCATGTTACCGTGTGGGTTATGTATAAACAAAAAAATTCCATCAGTCTTATGGAATACTAAACGACCTCAACTTTATGATAGGGTCTCCACTTTTAACTTCAATGTGCTTCTTGTATTTTATTTCTGCTACATGACATAAGAAAACCCACTTCTGCAGGTTGTATCCTGTTCAAAATGCCGTTACCAGTATGAGCTCCTTTCAGGCAATATTGTTAGTATAGAGTCGGAAGATTTTAGGTTGGTTTTCTTTAACTACTGTGTGATCCAGTAGTCGTTTGATTGAAGTGGTTTTACTTTGTTAAATCCTCGATTCTGTACCAATTATTTCAATCATTTCACCAAAAAAGAAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413308" ref_strand="+" ref_description="SGN-E413308 [STM-17-N21]">
      <seq>cacaaattactctttcctcttctcttctacttcccatttctccaaaaacctcactttttcctactattgttcctctaaaacgtctaacttcaaggtgaaagcttcgttgagtgaagctgaaggtgagaaaaaggtgtcggagttgttagatgatggattgattagtttggtttccgctgcgaaggatgcgagtgaggtattggatgtgatagctcaaaagactgggagaagtggtggagttgttagttgttctgattgttgtttgattatcgcttccgcacttgatcggagcaatgctgacttggcaatctctgtgtttgatgctatgcgttccacttttgattctgggacgactgttttagacagaggcccatcctatgatagatggaggtggtcaaggcctgatgttactacatataccttgttagttcgaggacttgcaacactgctgagggtttcagatgcccttaaaatcattgccaatgtttgtcgagtgagcatttctcctaatgaagaggttctctttggcaaagttgtccgatgtccaagttgcgagattgctgttactgttgctcagccacaagatggtatccaggttgtgtcctgttcaaaatgccgttaccagtatgagctcgtttcaagcaatattgttagtatagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="70526" stop="66649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70199" g_stop="69896" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="347" r_length="310" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69895" i_stop="68797" i_length="1099">
            <donor d_prob="0.532" d_score="0.88"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68796" g_stop="68627" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="517" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68626" i_stop="67666" i_length="961">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67665" g_stop="67588" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="595" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67587" i_stop="67016" i_length="572">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67015" g_stop="66949" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="662" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E413308" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70199" e_stop="69896"/>
          <exon e_start="68796" e_stop="68627"/>
          <exon e_start="67665" e_stop="67588"/>
          <exon e_start="67015" e_stop="66949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAAAAACCTCACTTTTTCTTACTATTGTTCGTCTAAAACGTCTAGTAATTTCAAGGTGAAAGCTTCGTTGAGTGAAGCGGAAGGTGAGAAAAA-GT-T----GTT---AGATGATGGATTGATTAGTTTGGTTTCGTCTGTGAAAGATGCGGGTGAGGTGTTGGATGTGATAGCTCAAAACACCGGGAGGAGTGGTGGAGTTGTGAGCGGTTCTGATTGTTGTTTGATTATCGCTGCCGCACTTGAACGGAGCAATGCTGAATTGGCGATATCTGTATTTGATGCTATGCGTTCCACTTTTCATCCTGGTACATTTGCTTTCTCATATGTCGTTAGCGATACTATTAGCTTTGAGATTGCTCACTTATTATGGTCATGAAGAAATGTTAATTGATAGTCTGTCTCGTTTTGAGTAGTTTAAGAAAATAAACAAGTAGTTTAAGAAAATAAAGAAGAGTTTTTGAATATGTGAAATATATCGAAATGTCCTTTTAATGTGGTTTATAATATGTTACATGCAAAAGTTTAGGATTAAAGAGTTGTTGAAGCGGACTAGAAAGGGAAAAGTAGGAGAAACAAATTGAAATTGAAACTGAGAGAGTATTTGAATATGGGTTTTTCCCTCTTTTGTGGGTTGTTGGGGGTAGGGGGTTTGAGTCATAGTGTTTTCGTAAGAAAGGTGAATTCTTTTTCAAGAGTTGAGGATATATGGAAATGATGCAATTGTTTTTGTGTGTTGCTTATGATGTCTAAATAAGTTGAAGAAGTTTGCTTCCGTGGGGTTAAAATTTGTCCATTATTTCCAACTGGAGTTGGAATTTTAGTGATGTATGTGATGCGAAATAACTAAATTTCCGTTTACACTAGCGTATCGAAAGGAAAACAATTATTCTTAAGGAAGTGAATCCACATACATGTTTGATCATTGCCTTTTTGGTATCAAAGGAAAAAGAAATAATCAACTTGTGTGTTGCTTGATTAAAATGTGAATTTGATAAAAGCTTTTTTACTCTCATTAAAAGGTACTCCAGTTGTTTGACACCATTCAGTTGATCAGTTCATATACTTATAACTTTTCAACTTTCAAGACTTAAAGCTGATTAAGTAATTTAAATTTTAAACTATAATGTGAATTTTTCTTTAGCAAACCAGCTCTTCAAACTATGTATCCCTCCATCACCTCACCCACCCCCTATAGGAGTGGCCTCACTGCTTTGAGCAACCTACTTGGGTAATATATTTAAGCTTTCAGATATGATGAATTTGAGATTAATAAAAGATGTAGAACCTGTCATCCTGAGTTTTTATGATATGCAGTACTGCTCTCACTATTATTCTCTTGTATATTGTGACGAGATTTCATTGATATCCCCCAATTTTGATCTACTTGACTTGCCCATATTTAAGGGACGACTGTTTTAGACAGAGGCCCATCCTATGATAGATGGAGGTGGTCAAGGCCAGATGTTAACACATATACCTTGTTAGTTCGAGGACTTGCAACACTGCTGAGGGTTTCGGATGCCCTTAAAATCATTGCCAATGTTTGTCGAGTGAGCATTTCTCCTAATGAAGAGGTCAGTATTCCTTCACTCACCTCAACTTGCTTTTGTATTAGTCTGCTCTAAGTATCTTATGTATTAGAGTTGTATACTTCTCTCTATATGAGCACCAATGCCAATATGAAGAATTTTCTGCAGTGAATTAAATTTATTACTGAGTATACGTAGTTTATTTAGAATCTGTAGTGTAATTACTTTCAGAACTTGTAAAACACTATTGGAATTTTGGACAAGCAAACTGCCACTAATGGACTATGTATTTGTAAGTTTGTTGATAGGTATTAATATGATATACAAGAACAGTATGGATCATTTAACTTTCAACTCTACCCTAGACAGTGTACTATATGAATCATCATTCTATCGTGTTAAATTTGTTTACTTAATCAAGATATGAGTTTGAATTAATAATTTCTTTTTCTTCATTTGTACTTGTGGTATATTAACATACAAACTCATGTATGACCGACTGGCTGAAGGAAAAGTACATGCGCAGTTTCTCTTTATTTATCTCAATGTTCTGGTGAATTATGTTCCAATTTCAGTTCTTAATTTACATGGAAGTGTCATGTATTCAAATGTCTTCCGCACTAGACAATCCTATATTCGGTTTGGGGTGTAAATGATTTTGTCCTTTAAGGTCTGTGGTATGACATCAATGCAGTCGGAGCAAATTCAAGCCCATTTAGTAACAAAGTCCACTAGAAATCTCAGCACTTAAGTCGAATATAGGCTATACCCAAATTGCACATCTTCTCCCATTAGGGAAAAGGAACTTGCTGCAATCTCACCGATATACTCAATATCTAATAGTGGTAACTTTGTCGTCATCAGTTTACTTACCGAAATGTGTGATGGTATAAGAAGACTCGTGAAGATTCTTTTTTAGAAATAATCTGAACCTGGATGCTTTAGTTAGCTTTCTTATTGTTGTTCGATTGCACATAAAGTAACATGCAGCTTGGTGTTTGGGCAGGTTCTCTTTGGCAAAGTTGTCCGATGTCCAAGTTGTGAGATTGCTGTTACTGTTGCTCAGCCACAAGATGGTATCCAGGTATGCACAAATGGCTTGCTGTTGGTTGGCCTGTTTATTTCTGTTTTATATCTTCTTTTCTGTACAGTGTGAACACGCAATGGCTGAAAGAAAGTGCTCTTGTTAAAGGACTACACTTATCTTGCCAAGATAAAGTGTTCTTGTTAAAGGACTACACTTATTTTCCTTTTACTGGCCAAGATAAAGAGATGATGTCTTGAGGTCTAAGTTGCGTGAACTCTTGACTTTCGATTCCGCAACGCTGTCGAATTCTCCAAAATACACTACTTTTGGAGAATCCAACGCGCATCCATTGATATTTTTGAAGAGTCCGAGCTACATAGCTTGAGGTGGTTTAAGAAAAGGCAATTTAAGTAGTGATGATAAGTTTTTCAGATTCTCCTCTCACATACAACTTTTACTACACATAGCTGATCATGTTACCGTGTGGGTTATGTATAAACAAAAATATTCCATCAGTCTTATGGAATACTAAACGACCTCAACTTTATGATAGGGTCTCCACTTTTAACTTCAATGTGCTTCTTGTATTTTATTTCTGCTACATGACATAAGAAAACCCACTTCTGCAGGTTGTATCCTGTTCAAAATGCCGTTACCAGTATGAGCTCCTTTCAGGCAATATTGTTAGTATAGAGT</genome_strand>
        <mrna_strand>TTCTCCAAAAACCTCACTTTTTCCTACTATTGTTCCTCTAAAACGTC---TAACTTCAAGGTGAAAGCTTCGTTGAGTGAAGCTGAAGGTGAGAAAAAGGTGTCGGAGTTGTTAGATGATGGATTGATTAGTTTGGTTTCCGCTGCGAAGGATGCGAGTGAGGTATTGGATGTGATAGCTCAAAAGACTGGGAGAAGTGGTGGAGTTGTTAGTTGTTCTGATTGTTGTTTGATTATCGCTTCCGCACTTGATCGGAGCAATGCTGACTTGGCAATCTCTGTGTTTGATGCTATGCGTTCCACTTTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGACTGTTTTAGACAGAGGCCCATCCTATGATAGATGGAGGTGGTCAAGGCCTGATGTTACTACATATACCTTGTTAGTTCGAGGACTTGCAACACTGCTGAGGGTTTCAGATGCCCTTAAAATCATTGCCAATGTTTGTCGAGTGAGCATTTCTCCTAATGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTTTGGCAAAGTTGTCCGATGTCCAAGTTGCGAGATTGCTGTTACTGTTGCTCAGCCACAAGATGGTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTCCTGTTCAAAATGCCGTTACCAGTATGAGCTCGTTTCAAGCAATATTGTTAGTATAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688001" ref_strand="+" ref_description="SGN-E688001 [T3_tus_85_B01]">
      <seq>gctgtctctattatgtcaagccacttttctccttctccttcccctgcaaaataacttggtttgatcaaatatcaattcccaacaagttcagttttaaagttgctggcaaacataaacatcatgggtgatggtcctcgaggaatagaggtgtttgaagatcattttcaagcttcaacttctggtgaagaccccatgcatagcccagatttatctaaatatattggaagtaatgattctttaagatccattagtagatcgtggactagaagaaaattgaaaggggctgcttcaattttgaatatgtttagcctcaacaagctaccttggatgtctggcacagatggtcaagaaaaggtagtcttaactgctgcagaagtagaatctcttcgatcagaactcggtgctttggaagaaagagaagctcattgcaaagctcaattagaacacattgatgaagtagtaagggctgcacgactttcggggtatttggacatgagaatgagatgggcaactttacccggagaacctcttccagttgatgacactgacgttgatgattggctgcctagattttttgtccttcagggatcgtgtatcttctggtattcgtcatgcacagatctaagcccccaagattcaacccttctatctgatgtagttgaagttggaaccttaccttgcctgatacgagacaatgaggacaaacgatattgcttttatatctcaactcgttatggactgaaatatgaatgctctagtattttctaagataaaggttgattcatggttggaagcattacagagtgattgcaagctgcggtctgactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="78822" stop="71364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78522" g_stop="78432" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78431" i_stop="76982" i_length="1450">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76981" g_stop="76831" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="242" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76724" g_stop="76613" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="354" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76480" g_stop="76398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="437" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76397" i_stop="74952" i_length="1446">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74951" g_stop="74888" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="501" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74887" i_stop="74773" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74772" g_stop="74655" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="619" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74654" i_stop="72131" i_length="2524">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72130" g_stop="71976" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="775" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71975" i_stop="71720" i_length="256">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71719" g_stop="71664" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="831" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E688001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78522" e_stop="78432"/>
          <exon e_start="76981" e_stop="76831"/>
          <exon e_start="76724" e_stop="76613"/>
          <exon e_start="76480" e_stop="76398"/>
          <exon e_start="74951" e_stop="74888"/>
          <exon e_start="74772" e_stop="74655"/>
          <exon e_start="72130" e_stop="71976"/>
          <exon e_start="71719" e_stop="71664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAGGTATTTTCAGATTATATACTATTTTCTTGAAGTGAATTTGGGTTTTTCTTTTCTTGTTGTTGTGATTAAAAACAAGATCAAAGTTTTGAGTTTTGAAGCTTTTTTGGGTTTTCAGTTTTTGTATAGATAATTAACAATATATTAGTAAAGACTTGAACTTTTTAGCTTTGGTGGAAGTTTACTGTACTTTGTGTTAGAGTTTATGCTTCTTCTGTACGGTCATTCAAGTTTGTGCTTTTTTTTTATTTAATTCGAAATAAGATTCTTGAATTTATTGGGATGTGTATGCTTTGGATTTTTTAAAATGATTTATGGGTATCTGCTAGTTCCCATTGGTATAAGTAGTTGGTAACTCTGTCTATTAAGGCTGGGATAGAAGAGAATAAATAGCCTAGTGTTTTTGCTTCTGTTGTGATTTGAACATGAGACTACAGGTTGACTTAGTGGTTTAGTGGTTCAAAATTCATCTGGGGTTACAAGTTCAAATTCCGTGAACTGCATATTTACATTTCGAAACCCTTGAGTGACTGAAAATTCTGGATCCGCTATTGCTAGGCTATACCCTTGGGTTTATGTTGTTTAGGATTCTGAATTGTGTTTTACCTCTATTACTAGTAAGGGCTGCTTGTTGTATTGTGCGGTGTGCTAGTGGATAGAACAATTGAATTGAAATCACCAATGACAGATAGGTTGAGGATAATTGTGTTGGCTACCTCTGTCCCTTTCTCCTGTTCCATGGACTTAAAACGATGGAAATCTTACAATTATAAAGTGGTTATCAGGCTTACATACTAACATTCTGTATTCATAAGAGATTCTAGTCATTGACAGGGTGCTTTTGGTTACGTTAATAGTGGGATTTTAGGTGCCACAGGGTACTCTTGGAGTTTTTATTTTGAATAAAGAGGTTGTGGTCCATTCATGTATTTCATCCTAGAAGTGGCTTTGTTTACAAGGAAAATAAGTGATCTTACTTTAATAAGTGTTTCCAAGATGATCAAATTCAAATACCTTTTTTCTAGCTGGATAGCAGTCTTTTAATGCAGAATCTGATGTCAAAGTTGGTTATCATACATAATTTATTTGAAATGGCATTTAAAATCTTGATGTTGCACAAATCTCGTCATGGTAGCCTGGTGAGAGGGATTGAATATGTAGGAAGCTATGGTAACACATAATAAACTTGAAACCATATGGGAAGTGGTTTGCAAAAGGGAAGAAAGAAGCAACACAGGAAAATATCAGGCAAACCCTGCAGTGGTTTGAGCAATAAATCTCAATACACTGCTGATGACATGTCATCTTTGAACCATAAACAACTGTCATTCTTCTGAATCTTTAAACATAATTAGCAATAATCATAGAAAAGTATTTTTTTTCTTATTATGAGGTTGAAATCTGTGAAGTTGGGAATGCTGATTATACATTGTAATTCTGGTTTCACTTCCAGTTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAGGTATATCTTCTAAAGGACATTTGAGGTGAAGAGGAGTTGCACATTTTTATTTTAAGGAATTCACTTTTTTAATTTGTTTTATTTGGCTTCTCCCGTATTAGAATAGATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAGGTACATGTTATTTGTAGTTGCCCGCTAACTGTTTAGCTTGCTATTTCTTACTTAATTGTTCTGAAGGTCATCATTGTCTTTGAGTTGGGGAAGGGAAAGATTACTCATTACGGATATTATCACATCTTGCAGGTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAACAGTGTATAAGACTGCTTCCCCTTTGATAGTATTCTGCTTTTAATTTCTTATTGTGAGACTTAGGGTCTCCTAGGCATTTAGTAGGTTGGTTCGGTTATAGTTATTTCTAGCTCATATGGTTACATTAGTTTATCATCACTATGTTCAATCCCTAATGCGTGTGAGGATCTTCTTAGGTCATCATGTGCGATCACTGTGAATATCAATTTGAGAACTAAAATGCATAAGTACTCATCTCTGTTTTAAGTGTATCATCAGTGTAATATGAACATGTTCACTGATTCATATCTTTTCAACTTTAACAAAAGTGACCCCAAGAATTTGAGGCCAAAGCATGCTTTGGTTCAATGGCAAAGGTAGTACGACATGGGATGTGCTGTTGGTTCAGGTCACGAGTTCGCTGCTGCTGAATTAAGTTTGGCCTTTAAGTGGAGTAGGCTAGTGGAACGACCTGAAAATGTAAATAGAATATGGCCAAATTAGCTGCACCATTTTTTATTTAGTTTATTTTTCATAAGTTGAATTGTGTTTTAAACAATGAATATTGCTGCAGTTTCGTTTTCCTTTCAAACAAAGCATTTCTTAAAGGTAGAAAATGATGGTTAACCTATGGAAAAACAGCTTAATGTATCTCCAAATCCTAAATGGGTTCAGAAAGTCCAATTATGAAACACCTCGGCAAGAGGAATCAATTTTGGGTTGCTGCATCAAATCTGGTTGCTGCGATCTAGCTAGAATAATTGAATGGATAATTCAAAAACAAAAATTGAAAAAGGAGCCAGAGATGTGAATGTAATTTAGGATAAAGGCCTCCTCACTGGGACTGTTCCCTGATTCTAAAACTAGAAAATACTAGGTGTAATTGAAAACATGACTCTGTAATTATTACATTTCTAAGCATAGGGAAATCTGTATCAAATTTCACCAGTAGAAAACTTCATATAGTATGACTGGCGTCCCCAAAAAATGAGAAGACATGATTCATCTATGTAATGCTTTCTCTAACAGTCTCCAAAATCCCTTATTGGAAAATAATCTTGAGTAAATATTCGTATTCTTAATTTTGTTATGATATTATCACCTAATAATGAACAAAACATTATATAAACAGTTGCAATTCCCTATTTGAAGAAAAAAAGAGAGATCTTCTTTCACAAATGTGAAGTACTGTTCAAGGATCATCCACTAGTCCAACACAATATCACAACGAAATTGTTACAAAGAGGACAAGAGCCTCACTAAGAGTAATTCTACTAGCTATTCTTAGCTTATACTTGCAAATACTTTGAAAATAACATTTTCAATCCTGAAAGGTGATTGATCTGTCAAAAGAGTATTGTCTTTTGATTTTCATTTTTTTCCTTTTTCACAGATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATGGTATTAATAGGCCAACAGCTTTCGTCATCTTGACATTGTTTGGATTTCAGACAGTACTACACTGGATTTACATATTTGTTCCACAATTTTATTCTGTTTTTTTTCCAATTAATAGAGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAGGTGAATTTTTCAACAGTTAAAGATTCTACTAGCATGCCTTTCAGGATACTCTCCAACTACTGTATAAATATGTTATTCCAAGCCTTTTGGCATACTTCACCCTGTATTTTTTTTGCCGAGACCGTCCATTAGACAACTTTGAATGTTACATTATAAGAAGATTTCCTTAAATGATATCTTAGAAGTTTATGCTGATTTCGTTGGTATTTACTACAACCTAATGGACCACCTTGAATTACTTGGTATCTCCTAGACGTTTTTGTTGAGTCAAGATTTACTGGTTTGAGATAATAGGAACTAGAGATCACGATTTTTAGTGTTTTACTAAATCCCACACCTTTCTACCAGGTGGTGAAATACTCATATATTATGTCAACAATGTTTCAAGTTCAACTAAACATTTTGCTAAATAGACTGAATGGAGAGTAACAGATACAACAAGAAAAATTAAAAATGGTAGAAGCAGTATATGACTGGAGATGGTGAAAAAAATGAAAGAAGAATGGAAGACTAGACAAACCTATCTTTTGGAGGGGTCCATTCAAATGGCTCGCACTTAACAGTACCAGACTTACTACCAACAAATGTGATGTTGCTATTTCCTATGTCTGTTGAGGAGGAGAGGAAGTTTTGGATAAACTTGGAAGAGATTTTCTATGGTAGGACAGCAAGGAAATGAAAACTTATCACTTGGTAACATAAAGCATTGTTGCAACAACAAAAGTGAAGGGACCGAATGGGATTTAGATATGTGAGGCTGCTGATAAGACCTTCTTGTGTAAATGGTTATGAAAGTATGGTTGAGAGAAGTATATCTATTGAAGATATGGTTATCCTGGAATACAAGAGACACCTACTTTTAGGTGTAATAAAATATCCACATCTTATATTTCGACCAGATACTAATTTCATTCTAGCACTCAGACATTTCTAAGATTCTGACAAGATGGGATCTCCATATTTAGAGGGTGTTTGGATTGACATATTTTTAGGTGATTTTGGCTTTTAAGCACTTTTAAGTTTTTAGAGGTGTTTGGCAAAGACACAAAGTGCTTAAAAGCACATCACTTTAGGCTTAAAAAGTGACCTACTTTGACTTTTAAGTCACTTAAAAAAAAAGCTTATTCAAACACCCTTAGTCAGTCTGATCCTGATCACTGATTTAAAATTGGCAATGGTTGGACTTTGGAGCATAATGTTTAAGAGAAACTAAAACAACTCGAATATGAAGAGGATGAAAGAAAACCACCAAAACTTGGAGGCATTTCAAGGACTTCCTAGTGCAGCAGATAATTTGATTTGAAAAGATTGCGGGACAAGTGGTATATACTTTCTATAAATCACTGATAGCAAGTGAAAACTAGAGCCTCTTGGAGAACAAATATGGAAAACTAGAACACTACAAAAAGTAGCCTGCTTCTTTTGGTGACACAACAGAATGTCCAAAGGAGAGGCATTCATCTTCTTTTTTTTGAAACTGGTAACATAAAGAGATATATATGTTTCTCTATTACGAGATGCCCATATTTCCTCTACACGAGATGTATAAACTTGTGAGATGAGGATATAAGGATACAACAACATATTCCTTCAACCAATATGGGATATTCTGAAAAAACAAAATCTCAGTTTGAATGTGGTGTATATTTTGGAGAAAAAGGAATCTGAGATGCTTCAAGGGCAACGAACTCCACCTTGAAAATTAAGTTGAATTGCATCATTTTGCTCTCTATTTTGGTGTATATCTACTTGATGTTGAAACTTTGGTGGATTTTATAGACTCCATACACTAGAAGGGAATATACTTTGGCTTTTAGATGTACATGTCATAGTCTTACTGCTATATGTCATAATAAAATTCCTTTATCTAATGGTAAAAAGAATCTATAGCCTAAGAATAGGGGGGAAAAGTCAGGTGAAATAATACGAAATTACACCATTAAGGGGGATCAAAGTAATCATATATTAAAGTTTATTGGTTGTTGGAAGTATAGTTTGATTCAAACCAAAGTCCTTTGGTTTACTAGAAGAGTTTTCTTCTGTTTCATGGAGAACAAATGTGTTTTCACCAAAAAAAGAACTCTGCTTTAAAAAGCTAAAGGGTTCTTAAGAAAACCTATTGGGGCCAAACATGGCCTAAATTTCCTTTCCTCGGTCCTTACATCTGCTACTGCAGATAGAGCAGGGGAAAACATCTGTGGTTGGGGTAGCAATTACCTTACCTATTCGGAATAGCTCAATCTTGAATTATCCCACCTTATATTGGCATCTGCTGTTTCTTGATGATCTGCTATGTGTTCCTATTATTTTCTCTTGATTTAATGGCTTCGCTTTTTTTCCATTAACTTCATTCCAAAATACTTCCACAGTTTAGCTGCAGTCTGTATTGTATCTCCTCTTCGTTTATCTTTTTAAAGTATTTCTGATTCTGTTCTATTCTATTTTGATAAATTTGGATGTTCCGATGCTTCCTGATGTAACAGATATGCTATTTCTTGATTAATTTTGAATAACATGTTTGCAGATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATACGAGACAATGAGGACAAACGATATTGCTTTTATATCTCAACTCGTTATGGACTGAAATATGAATGCTCTAGTA-TTTCTAAGATAAAGGTAATGTTTTTTTTTTTCTGTATACTTTATTGCAAGTAACTATTCTGAATCTGTCTTGAATTTGTTGCAAGTTTAAGTTCCCGAATTGATCAAGTGTGGAAGTTGAGCATTTCTAAATGAACCCTGCTTGTTCATATGCTTTATATGCACCTCTCTTTGGATGTTAACTTTGTTTCAACTTTCAACACACCTAGTGCCTTTCGGGTAGTATTGAAAGTATTTCATGATTTGTCTTGCTATCCTTTTTTTGTCCCAGGTTGATTCATGGTTGGAAGCATTACAGAGTGATTGCAAGCTGCGGTCTGACTGAAA</genome_strand>
        <mrna_strand>GCTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG..........................................................................................................ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG....................................................................................................................................GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATG...................................................................................................................AGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATACGAGACAATGAGGACAAACGATATTGCTTTTATATCTCAACTCGTTATGGACTGAAATATGAATGCTCTAGTATTTTCTAAGATAAAG................................................................................................................................................................................................................................................................GTTGATTCATGGTTGGAAGCATTACAGAGTGATTGCAAGCTGCGGTCTGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334517" ref_strand="+" ref_description="SGN-E334517 [cTOD-23-N17]">
      <seq>ctgtctctattatgtcaagccacttttctccttctccttcccctgcaaaataacttggtttgatcaaatatcaattcccaacaagttcagttttaaagttgctggcaaacataaacatcatgggtgatggtcctcgaggaatagaggtgtttgaagatcattttcaagcttcaacttctggtgaagaccccatgcatagcccagatttatctaaatatattggaagtaatgattctttaagatccattagtagatcgtggactagaagaaaattgaaaggggctgcttcaattttgaatatgtttagcctcaacaagctaccttggatgtctggcacagatggtcaagaaaaggtagtcttaactgctgcagaagtagaatctcttcgatcagaactcggtgctttggaagaaagagaagctcattgcaaagctcaattagaacacattgatgaagtagtaagggctgcacgactttcggggtatttggacatgagaatgagatgggcaactttacccggagaacctcttccagttgatgacactgacgttgatgattggctgcctagattttttgtccttcagggatcgtgtatcttctggtattcgtcatgcacagatctaagcccccaagattcaacccttctatctgatgtagttgaagttggaaccttaccttgcctgatacgagacaatgaggacaaacgatattgcttttatatctcaactcgttatggactgaaatatgaatgctctagtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="78821" stop="71686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78521" g_stop="78432" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78431" i_stop="76982" i_length="1450">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76981" g_stop="76831" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="241" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76724" g_stop="76613" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="353" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76480" g_stop="76398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="436" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76397" i_stop="74952" i_length="1446">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74951" g_stop="74888" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="500" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74887" i_stop="74773" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74772" g_stop="74655" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="618" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74654" i_stop="72131" i_length="2524">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72130" g_stop="71986" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="763" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E334517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78521" e_stop="78432"/>
          <exon e_start="76981" e_stop="76831"/>
          <exon e_start="76724" e_stop="76613"/>
          <exon e_start="76480" e_stop="76398"/>
          <exon e_start="74951" e_stop="74888"/>
          <exon e_start="74772" e_stop="74655"/>
          <exon e_start="72130" e_stop="71986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAGGTATTTTCAGATTATATACTATTTTCTTGAAGTGAATTTGGGTTTTTCTTTTCTTGTTGTTGTGATTAAAAACAAGATCAAAGTTTTGAGTTTTGAAGCTTTTTTGGGTTTTCAGTTTTTGTATAGATAATTAACAATATATTAGTAAAGACTTGAACTTTTTAGCTTTGGTGGAAGTTTACTGTACTTTGTGTTAGAGTTTATGCTTCTTCTGTACGGTCATTCAAGTTTGTGCTTTTTTTTTATTTAATTCGAAATAAGATTCTTGAATTTATTGGGATGTGTATGCTTTGGATTTTTTAAAATGATTTATGGGTATCTGCTAGTTCCCATTGGTATAAGTAGTTGGTAACTCTGTCTATTAAGGCTGGGATAGAAGAGAATAAATAGCCTAGTGTTTTTGCTTCTGTTGTGATTTGAACATGAGACTACAGGTTGACTTAGTGGTTTAGTGGTTCAAAATTCATCTGGGGTTACAAGTTCAAATTCCGTGAACTGCATATTTACATTTCGAAACCCTTGAGTGACTGAAAATTCTGGATCCGCTATTGCTAGGCTATACCCTTGGGTTTATGTTGTTTAGGATTCTGAATTGTGTTTTACCTCTATTACTAGTAAGGGCTGCTTGTTGTATTGTGCGGTGTGCTAGTGGATAGAACAATTGAATTGAAATCACCAATGACAGATAGGTTGAGGATAATTGTGTTGGCTACCTCTGTCCCTTTCTCCTGTTCCATGGACTTAAAACGATGGAAATCTTACAATTATAAAGTGGTTATCAGGCTTACATACTAACATTCTGTATTCATAAGAGATTCTAGTCATTGACAGGGTGCTTTTGGTTACGTTAATAGTGGGATTTTAGGTGCCACAGGGTACTCTTGGAGTTTTTATTTTGAATAAAGAGGTTGTGGTCCATTCATGTATTTCATCCTAGAAGTGGCTTTGTTTACAAGGAAAATAAGTGATCTTACTTTAATAAGTGTTTCCAAGATGATCAAATTCAAATACCTTTTTTCTAGCTGGATAGCAGTCTTTTAATGCAGAATCTGATGTCAAAGTTGGTTATCATACATAATTTATTTGAAATGGCATTTAAAATCTTGATGTTGCACAAATCTCGTCATGGTAGCCTGGTGAGAGGGATTGAATATGTAGGAAGCTATGGTAACACATAATAAACTTGAAACCATATGGGAAGTGGTTTGCAAAAGGGAAGAAAGAAGCAACACAGGAAAATATCAGGCAAACCCTGCAGTGGTTTGAGCAATAAATCTCAATACACTGCTGATGACATGTCATCTTTGAACCATAAACAACTGTCATTCTTCTGAATCTTTAAACATAATTAGCAATAATCATAGAAAAGTATTTTTTTTCTTATTATGAGGTTGAAATCTGTGAAGTTGGGAATGCTGATTATACATTGTAATTCTGGTTTCACTTCCAGTTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAGGTATATCTTCTAAAGGACATTTGAGGTGAAGAGGAGTTGCACATTTTTATTTTAAGGAATTCACTTTTTTAATTTGTTTTATTTGGCTTCTCCCGTATTAGAATAGATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAGGTACATGTTATTTGTAGTTGCCCGCTAACTGTTTAGCTTGCTATTTCTTACTTAATTGTTCTGAAGGTCATCATTGTCTTTGAGTTGGGGAAGGGAAAGATTACTCATTACGGATATTATCACATCTTGCAGGTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAACAGTGTATAAGACTGCTTCCCCTTTGATAGTATTCTGCTTTTAATTTCTTATTGTGAGACTTAGGGTCTCCTAGGCATTTAGTAGGTTGGTTCGGTTATAGTTATTTCTAGCTCATATGGTTACATTAGTTTATCATCACTATGTTCAATCCCTAATGCGTGTGAGGATCTTCTTAGGTCATCATGTGCGATCACTGTGAATATCAATTTGAGAACTAAAATGCATAAGTACTCATCTCTGTTTTAAGTGTATCATCAGTGTAATATGAACATGTTCACTGATTCATATCTTTTCAACTTTAACAAAAGTGACCCCAAGAATTTGAGGCCAAAGCATGCTTTGGTTCAATGGCAAAGGTAGTACGACATGGGATGTGCTGTTGGTTCAGGTCACGAGTTCGCTGCTGCTGAATTAAGTTTGGCCTTTAAGTGGAGTAGGCTAGTGGAACGACCTGAAAATGTAAATAGAATATGGCCAAATTAGCTGCACCATTTTTTATTTAGTTTATTTTTCATAAGTTGAATTGTGTTTTAAACAATGAATATTGCTGCAGTTTCGTTTTCCTTTCAAACAAAGCATTTCTTAAAGGTAGAAAATGATGGTTAACCTATGGAAAAACAGCTTAATGTATCTCCAAATCCTAAATGGGTTCAGAAAGTCCAATTATGAAACACCTCGGCAAGAGGAATCAATTTTGGGTTGCTGCATCAAATCTGGTTGCTGCGATCTAGCTAGAATAATTGAATGGATAATTCAAAAACAAAAATTGAAAAAGGAGCCAGAGATGTGAATGTAATTTAGGATAAAGGCCTCCTCACTGGGACTGTTCCCTGATTCTAAAACTAGAAAATACTAGGTGTAATTGAAAACATGACTCTGTAATTATTACATTTCTAAGCATAGGGAAATCTGTATCAAATTTCACCAGTAGAAAACTTCATATAGTATGACTGGCGTCCCCAAAAAATGAGAAGACATGATTCATCTATGTAATGCTTTCTCTAACAGTCTCCAAAATCCCTTATTGGAAAATAATCTTGAGTAAATATTCGTATTCTTAATTTTGTTATGATATTATCACCTAATAATGAACAAAACATTATATAAACAGTTGCAATTCCCTATTTGAAGAAAAAAAGAGAGATCTTCTTTCACAAATGTGAAGTACTGTTCAAGGATCATCCACTAGTCCAACACAATATCACAACGAAATTGTTACAAAGAGGACAAGAGCCTCACTAAGAGTAATTCTACTAGCTATTCTTAGCTTATACTTGCAAATACTTTGAAAATAACATTTTCAATCCTGAAAGGTGATTGATCTGTCAAAAGAGTATTGTCTTTTGATTTTCATTTTTTTCCTTTTTCACAGATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATGGTATTAATAGGCCAACAGCTTTCGTCATCTTGACATTGTTTGGATTTCAGACAGTACTACACTGGATTTACATATTTGTTCCACAATTTTATTCTGTTTTTTTTCCAATTAATAGAGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAGGTGAATTTTTCAACAGTTAAAGATTCTACTAGCATGCCTTTCAGGATACTCTCCAACTACTGTATAAATATGTTATTCCAAGCCTTTTGGCATACTTCACCCTGTATTTTTTTTGCCGAGACCGTCCATTAGACAACTTTGAATGTTACATTATAAGAAGATTTCCTTAAATGATATCTTAGAAGTTTATGCTGATTTCGTTGGTATTTACTACAACCTAATGGACCACCTTGAATTACTTGGTATCTCCTAGACGTTTTTGTTGAGTCAAGATTTACTGGTTTGAGATAATAGGAACTAGAGATCACGATTTTTAGTGTTTTACTAAATCCCACACCTTTCTACCAGGTGGTGAAATACTCATATATTATGTCAACAATGTTTCAAGTTCAACTAAACATTTTGCTAAATAGACTGAATGGAGAGTAACAGATACAACAAGAAAAATTAAAAATGGTAGAAGCAGTATATGACTGGAGATGGTGAAAAAAATGAAAGAAGAATGGAAGACTAGACAAACCTATCTTTTGGAGGGGTCCATTCAAATGGCTCGCACTTAACAGTACCAGACTTACTACCAACAAATGTGATGTTGCTATTTCCTATGTCTGTTGAGGAGGAGAGGAAGTTTTGGATAAACTTGGAAGAGATTTTCTATGGTAGGACAGCAAGGAAATGAAAACTTATCACTTGGTAACATAAAGCATTGTTGCAACAACAAAAGTGAAGGGACCGAATGGGATTTAGATATGTGAGGCTGCTGATAAGACCTTCTTGTGTAAATGGTTATGAAAGTATGGTTGAGAGAAGTATATCTATTGAAGATATGGTTATCCTGGAATACAAGAGACACCTACTTTTAGGTGTAATAAAATATCCACATCTTATATTTCGACCAGATACTAATTTCATTCTAGCACTCAGACATTTCTAAGATTCTGACAAGATGGGATCTCCATATTTAGAGGGTGTTTGGATTGACATATTTTTAGGTGATTTTGGCTTTTAAGCACTTTTAAGTTTTTAGAGGTGTTTGGCAAAGACACAAAGTGCTTAAAAGCACATCACTTTAGGCTTAAAAAGTGACCTACTTTGACTTTTAAGTCACTTAAAAAAAAAGCTTATTCAAACACCCTTAGTCAGTCTGATCCTGATCACTGATTTAAAATTGGCAATGGTTGGACTTTGGAGCATAATGTTTAAGAGAAACTAAAACAACTCGAATATGAAGAGGATGAAAGAAAACCACCAAAACTTGGAGGCATTTCAAGGACTTCCTAGTGCAGCAGATAATTTGATTTGAAAAGATTGCGGGACAAGTGGTATATACTTTCTATAAATCACTGATAGCAAGTGAAAACTAGAGCCTCTTGGAGAACAAATATGGAAAACTAGAACACTACAAAAAGTAGCCTGCTTCTTTTGGTGACACAACAGAATGTCCAAAGGAGAGGCATTCATCTTCTTTTTTTTGAAACTGGTAACATAAAGAGATATATATGTTTCTCTATTACGAGATGCCCATATTTCCTCTACACGAGATGTATAAACTTGTGAGATGAGGATATAAGGATACAACAACATATTCCTTCAACCAATATGGGATATTCTGAAAAAACAAAATCTCAGTTTGAATGTGGTGTATATTTTGGAGAAAAAGGAATCTGAGATGCTTCAAGGGCAACGAACTCCACCTTGAAAATTAAGTTGAATTGCATCATTTTGCTCTCTATTTTGGTGTATATCTACTTGATGTTGAAACTTTGGTGGATTTTATAGACTCCATACACTAGAAGGGAATATACTTTGGCTTTTAGATGTACATGTCATAGTCTTACTGCTATATGTCATAATAAAATTCCTTTATCTAATGGTAAAAAGAATCTATAGCCTAAGAATAGGGGGGAAAAGTCAGGTGAAATAATACGAAATTACACCATTAAGGGGGATCAAAGTAATCATATATTAAAGTTTATTGGTTGTTGGAAGTATAGTTTGATTCAAACCAAAGTCCTTTGGTTTACTAGAAGAGTTTTCTTCTGTTTCATGGAGAACAAATGTGTTTTCACCAAAAAAAGAACTCTGCTTTAAAAAGCTAAAGGGTTCTTAAGAAAACCTATTGGGGCCAAACATGGCCTAAATTTCCTTTCCTCGGTCCTTACATCTGCTACTGCAGATAGAGCAGGGGAAAACATCTGTGGTTGGGGTAGCAATTACCTTACCTATTCGGAATAGCTCAATCTTGAATTATCCCACCTTATATTGGCATCTGCTGTTTCTTGATGATCTGCTATGTGTTCCTATTATTTTCTCTTGATTTAATGGCTTCGCTTTTTTTCCATTAACTTCATTCCAAAATACTTCCACAGTTTAGCTGCAGTCTGTATTGTATCTCCTCTTCGTTTATCTTTTTAAAGTATTTCTGATTCTGTTCTATTCTATTTTGATAAATTTGGATGTTCCGATGCTTCCTGATGTAACAGATATGCTATTTCTTGATTAATTTTGAATAACATGTTTGCAGATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATACGAGACAATGAGGACAAACGATATTGCTTTTATATCTCAACTCGTTATGGACTGAAATATGAATGCTCTAGTATTTC</genome_strand>
        <mrna_strand>CTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG..........................................................................................................ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG....................................................................................................................................GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATG...................................................................................................................AGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATACGAGACAATGAGGACAAACGATATTGCTTTTATATCTCAACTCGTTATGGACTGAAATATGAATGCTCTAGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688002" ref_strand="+" ref_description="SGN-E688002 [T3_tus_85_B02]">
      <seq>cccttatgtctctattatgtcaagccacttttctccttctccttctcctgcaaaataacttggtttgatcaaatatcaattcccaacaagttcagttttaaagttgctggcaaacatcaacatcatgggtgatggtcctcgaggaatagaggtgtttgaagatcattttcaagcttcaacttctggtgaagaccccatgcatagcccagatttatctaaatatattggaagtaatgattctttaagatccattagtagatcgtggactagaagaaaattgaaaggggctgcttcaattttgaatatgtttagcctcaacaaactaccttggatgtctggcacagatggtcaagaaaaggtagtcttaactgctgcagaagtagaatctcttcgatcagaactcggtgctttggaagaaagagaagctcattgcaaagctcaattagaacacattgatgaagtagtaagggctgcacgactttcggggtatttggacatgagaatgaaatgggcaactttacccggagaacctcttccagttgatgacactgacgttgatgattaggctgcctagattttttgtccttcagggatcgagtatcttctggtattcgtcatgcacagatctaagcccccaagattcaacccttctatctgatgtagttgaagttggaaccttaccttgcctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="78820" stop="71763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78526" g_stop="78432" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78431" i_stop="76982" i_length="1450">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76981" g_stop="76831" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76724" g_stop="76613" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="358" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76480" g_stop="76398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="441" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76397" i_stop="74952" i_length="1446">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74951" g_stop="74888" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="505" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74887" i_stop="74773" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74772" g_stop="74655" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="624" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74654" i_stop="72131" i_length="2524">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72130" g_stop="72062" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="693" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E688002" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78526" e_stop="78432"/>
          <exon e_start="76981" e_stop="76831"/>
          <exon e_start="76724" e_stop="76613"/>
          <exon e_start="76480" e_stop="76398"/>
          <exon e_start="74951" e_stop="74888"/>
          <exon e_start="74772" e_stop="74655"/>
          <exon e_start="72130" e_stop="72062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAGGTATTTTCAGATTATATACTATTTTCTTGAAGTGAATTTGGGTTTTTCTTTTCTTGTTGTTGTGATTAAAAACAAGATCAAAGTTTTGAGTTTTGAAGCTTTTTTGGGTTTTCAGTTTTTGTATAGATAATTAACAATATATTAGTAAAGACTTGAACTTTTTAGCTTTGGTGGAAGTTTACTGTACTTTGTGTTAGAGTTTATGCTTCTTCTGTACGGTCATTCAAGTTTGTGCTTTTTTTTTATTTAATTCGAAATAAGATTCTTGAATTTATTGGGATGTGTATGCTTTGGATTTTTTAAAATGATTTATGGGTATCTGCTAGTTCCCATTGGTATAAGTAGTTGGTAACTCTGTCTATTAAGGCTGGGATAGAAGAGAATAAATAGCCTAGTGTTTTTGCTTCTGTTGTGATTTGAACATGAGACTACAGGTTGACTTAGTGGTTTAGTGGTTCAAAATTCATCTGGGGTTACAAGTTCAAATTCCGTGAACTGCATATTTACATTTCGAAACCCTTGAGTGACTGAAAATTCTGGATCCGCTATTGCTAGGCTATACCCTTGGGTTTATGTTGTTTAGGATTCTGAATTGTGTTTTACCTCTATTACTAGTAAGGGCTGCTTGTTGTATTGTGCGGTGTGCTAGTGGATAGAACAATTGAATTGAAATCACCAATGACAGATAGGTTGAGGATAATTGTGTTGGCTACCTCTGTCCCTTTCTCCTGTTCCATGGACTTAAAACGATGGAAATCTTACAATTATAAAGTGGTTATCAGGCTTACATACTAACATTCTGTATTCATAAGAGATTCTAGTCATTGACAGGGTGCTTTTGGTTACGTTAATAGTGGGATTTTAGGTGCCACAGGGTACTCTTGGAGTTTTTATTTTGAATAAAGAGGTTGTGGTCCATTCATGTATTTCATCCTAGAAGTGGCTTTGTTTACAAGGAAAATAAGTGATCTTACTTTAATAAGTGTTTCCAAGATGATCAAATTCAAATACCTTTTTTCTAGCTGGATAGCAGTCTTTTAATGCAGAATCTGATGTCAAAGTTGGTTATCATACATAATTTATTTGAAATGGCATTTAAAATCTTGATGTTGCACAAATCTCGTCATGGTAGCCTGGTGAGAGGGATTGAATATGTAGGAAGCTATGGTAACACATAATAAACTTGAAACCATATGGGAAGTGGTTTGCAAAAGGGAAGAAAGAAGCAACACAGGAAAATATCAGGCAAACCCTGCAGTGGTTTGAGCAATAAATCTCAATACACTGCTGATGACATGTCATCTTTGAACCATAAACAACTGTCATTCTTCTGAATCTTTAAACATAATTAGCAATAATCATAGAAAAGTATTTTTTTTCTTATTATGAGGTTGAAATCTGTGAAGTTGGGAATGCTGATTATACATTGTAATTCTGGTTTCACTTCCAGTTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAGGTATATCTTCTAAAGGACATTTGAGGTGAAGAGGAGTTGCACATTTTTATTTTAAGGAATTCACTTTTTTAATTTGTTTTATTTGGCTTCTCCCGTATTAGAATAGATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAGGTACATGTTATTTGTAGTTGCCCGCTAACTGTTTAGCTTGCTATTTCTTACTTAATTGTTCTGAAGGTCATCATTGTCTTTGAGTTGGGGAAGGGAAAGATTACTCATTACGGATATTATCACATCTTGCAGGTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAACAGTGTATAAGACTGCTTCCCCTTTGATAGTATTCTGCTTTTAATTTCTTATTGTGAGACTTAGGGTCTCCTAGGCATTTAGTAGGTTGGTTCGGTTATAGTTATTTCTAGCTCATATGGTTACATTAGTTTATCATCACTATGTTCAATCCCTAATGCGTGTGAGGATCTTCTTAGGTCATCATGTGCGATCACTGTGAATATCAATTTGAGAACTAAAATGCATAAGTACTCATCTCTGTTTTAAGTGTATCATCAGTGTAATATGAACATGTTCACTGATTCATATCTTTTCAACTTTAACAAAAGTGACCCCAAGAATTTGAGGCCAAAGCATGCTTTGGTTCAATGGCAAAGGTAGTACGACATGGGATGTGCTGTTGGTTCAGGTCACGAGTTCGCTGCTGCTGAATTAAGTTTGGCCTTTAAGTGGAGTAGGCTAGTGGAACGACCTGAAAATGTAAATAGAATATGGCCAAATTAGCTGCACCATTTTTTATTTAGTTTATTTTTCATAAGTTGAATTGTGTTTTAAACAATGAATATTGCTGCAGTTTCGTTTTCCTTTCAAACAAAGCATTTCTTAAAGGTAGAAAATGATGGTTAACCTATGGAAAAACAGCTTAATGTATCTCCAAATCCTAAATGGGTTCAGAAAGTCCAATTATGAAACACCTCGGCAAGAGGAATCAATTTTGGGTTGCTGCATCAAATCTGGTTGCTGCGATCTAGCTAGAATAATTGAATGGATAATTCAAAAACAAAAATTGAAAAAGGAGCCAGAGATGTGAATGTAATTTAGGATAAAGGCCTCCTCACTGGGACTGTTCCCTGATTCTAAAACTAGAAAATACTAGGTGTAATTGAAAACATGACTCTGTAATTATTACATTTCTAAGCATAGGGAAATCTGTATCAAATTTCACCAGTAGAAAACTTCATATAGTATGACTGGCGTCCCCAAAAAATGAGAAGACATGATTCATCTATGTAATGCTTTCTCTAACAGTCTCCAAAATCCCTTATTGGAAAATAATCTTGAGTAAATATTCGTATTCTTAATTTTGTTATGATATTATCACCTAATAATGAACAAAACATTATATAAACAGTTGCAATTCCCTATTTGAAGAAAAAAAGAGAGATCTTCTTTCACAAATGTGAAGTACTGTTCAAGGATCATCCACTAGTCCAACACAATATCACAACGAAATTGTTACAAAGAGGACAAGAGCCTCACTAAGAGTAATTCTACTAGCTATTCTTAGCTTATACTTGCAAATACTTTGAAAATAACATTTTCAATCCTGAAAGGTGATTGATCTGTCAAAAGAGTATTGTCTTTTGATTTTCATTTTTTTCCTTTTTCACAGATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATGGTATTAATAGGCCAACAGCTTTCGTCATCTTGACATTGTTTGGATTTCAGACAGTACTACACTGGATTTACATATTTGTTCCACAATTTTATTCTGTTTTTTTTCCAATTAATAGAGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATT-GGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAGGTGAATTTTTCAACAGTTAAAGATTCTACTAGCATGCCTTTCAGGATACTCTCCAACTACTGTATAAATATGTTATTCCAAGCCTTTTGGCATACTTCACCCTGTATTTTTTTTGCCGAGACCGTCCATTAGACAACTTTGAATGTTACATTATAAGAAGATTTCCTTAAATGATATCTTAGAAGTTTATGCTGATTTCGTTGGTATTTACTACAACCTAATGGACCACCTTGAATTACTTGGTATCTCCTAGACGTTTTTGTTGAGTCAAGATTTACTGGTTTGAGATAATAGGAACTAGAGATCACGATTTTTAGTGTTTTACTAAATCCCACACCTTTCTACCAGGTGGTGAAATACTCATATATTATGTCAACAATGTTTCAAGTTCAACTAAACATTTTGCTAAATAGACTGAATGGAGAGTAACAGATACAACAAGAAAAATTAAAAATGGTAGAAGCAGTATATGACTGGAGATGGTGAAAAAAATGAAAGAAGAATGGAAGACTAGACAAACCTATCTTTTGGAGGGGTCCATTCAAATGGCTCGCACTTAACAGTACCAGACTTACTACCAACAAATGTGATGTTGCTATTTCCTATGTCTGTTGAGGAGGAGAGGAAGTTTTGGATAAACTTGGAAGAGATTTTCTATGGTAGGACAGCAAGGAAATGAAAACTTATCACTTGGTAACATAAAGCATTGTTGCAACAACAAAAGTGAAGGGACCGAATGGGATTTAGATATGTGAGGCTGCTGATAAGACCTTCTTGTGTAAATGGTTATGAAAGTATGGTTGAGAGAAGTATATCTATTGAAGATATGGTTATCCTGGAATACAAGAGACACCTACTTTTAGGTGTAATAAAATATCCACATCTTATATTTCGACCAGATACTAATTTCATTCTAGCACTCAGACATTTCTAAGATTCTGACAAGATGGGATCTCCATATTTAGAGGGTGTTTGGATTGACATATTTTTAGGTGATTTTGGCTTTTAAGCACTTTTAAGTTTTTAGAGGTGTTTGGCAAAGACACAAAGTGCTTAAAAGCACATCACTTTAGGCTTAAAAAGTGACCTACTTTGACTTTTAAGTCACTTAAAAAAAAAGCTTATTCAAACACCCTTAGTCAGTCTGATCCTGATCACTGATTTAAAATTGGCAATGGTTGGACTTTGGAGCATAATGTTTAAGAGAAACTAAAACAACTCGAATATGAAGAGGATGAAAGAAAACCACCAAAACTTGGAGGCATTTCAAGGACTTCCTAGTGCAGCAGATAATTTGATTTGAAAAGATTGCGGGACAAGTGGTATATACTTTCTATAAATCACTGATAGCAAGTGAAAACTAGAGCCTCTTGGAGAACAAATATGGAAAACTAGAACACTACAAAAAGTAGCCTGCTTCTTTTGGTGACACAACAGAATGTCCAAAGGAGAGGCATTCATCTTCTTTTTTTTGAAACTGGTAACATAAAGAGATATATATGTTTCTCTATTACGAGATGCCCATATTTCCTCTACACGAGATGTATAAACTTGTGAGATGAGGATATAAGGATACAACAACATATTCCTTCAACCAATATGGGATATTCTGAAAAAACAAAATCTCAGTTTGAATGTGGTGTATATTTTGGAGAAAAAGGAATCTGAGATGCTTCAAGGGCAACGAACTCCACCTTGAAAATTAAGTTGAATTGCATCATTTTGCTCTCTATTTTGGTGTATATCTACTTGATGTTGAAACTTTGGTGGATTTTATAGACTCCATACACTAGAAGGGAATATACTTTGGCTTTTAGATGTACATGTCATAGTCTTACTGCTATATGTCATAATAAAATTCCTTTATCTAATGGTAAAAAGAATCTATAGCCTAAGAATAGGGGGGAAAAGTCAGGTGAAATAATACGAAATTACACCATTAAGGGGGATCAAAGTAATCATATATTAAAGTTTATTGGTTGTTGGAAGTATAGTTTGATTCAAACCAAAGTCCTTTGGTTTACTAGAAGAGTTTTCTTCTGTTTCATGGAGAACAAATGTGTTTTCACCAAAAAAAGAACTCTGCTTTAAAAAGCTAAAGGGTTCTTAAGAAAACCTATTGGGGCCAAACATGGCCTAAATTTCCTTTCCTCGGTCCTTACATCTGCTACTGCAGATAGAGCAGGGGAAAACATCTGTGGTTGGGGTAGCAATTACCTTACCTATTCGGAATAGCTCAATCTTGAATTATCCCACCTTATATTGGCATCTGCTGTTTCTTGATGATCTGCTATGTGTTCCTATTATTTTCTCTTGATTTAATGGCTTCGCTTTTTTTCCATTAACTTCATTCCAAAATACTTCCACAGTTTAGCTGCAGTCTGTATTGTATCTCCTCTTCGTTTATCTTTTTAAAGTATTTCTGATTCTGTTCTATTCTATTTTGATAAATTTGGATGTTCCGATGCTTCCTGATGTAACAGATATGCTATTTCTTGATTAATTTTGAATAACATGTTTGCAGATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATAC</genome_strand>
        <mrna_strand>CCCTTATGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCTCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGCTGGCAAACATCAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG..........................................................................................................ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAACTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG....................................................................................................................................GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATG...................................................................................................................AAATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTAGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGAGTATCTTCTGGTATTCGTCATGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359205" ref_strand="+" ref_description="SGN-E359205 [cLHT-11-L3]">
      <seq>tcctatatggctgtctccattatgtcaagccacttttctccttctccttcccctgcaaaataacttggtttgatcaaatatcaatacccaacaagttcagttttaaagttgctggcaaatataaacatcatgggtgatggtcctcgaggaatagaggtgtttgaagatcattttcaagcttcaacatctggtgaagaccccatgcatagcccaaatttatctaaatatattggaagtaatgattctttaagatccattagtagatcggggactagaagaaaattgaaaggggctgcttcaattttgaatatgtttagcctcaacaagctaccttggatgtctggcacagatggtcaacaaaaggtagtcttaactgctgcagaagtagaatctcttcgatcagaactcggtgctttgcaagaaagagaagctcattgcgaagctcaattagaacacattgatgaagtcgtacgggctgcacgactttcggggtatttggacatgagaatgagatgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="78831" stop="74584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78531" g_stop="78432" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78431" i_stop="76982" i_length="1450">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76981" g_stop="76831" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="251" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.502" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76724" g_stop="76613" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="363" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76480" g_stop="76398" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="446" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76397" i_stop="74952" i_length="1446">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74951" g_stop="74888" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="510" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74887" i_stop="74773" i_length="115">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74772" g_stop="74764" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="519" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E359205" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78531" e_stop="78432"/>
          <exon e_start="76981" e_stop="76831"/>
          <exon e_start="76724" e_stop="76613"/>
          <exon e_start="76480" e_stop="76398"/>
          <exon e_start="74951" e_stop="74888"/>
          <exon e_start="74772" e_stop="74764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATATGGCTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAGGTATTTTCAGATTATATACTATTTTCTTGAAGTGAATTTGGGTTTTTCTTTTCTTGTTGTTGTGATTAAAAACAAGATCAAAGTTTTGAGTTTTGAAGCTTTTTTGGGTTTTCAGTTTTTGTATAGATAATTAACAATATATTAGTAAAGACTTGAACTTTTTAGCTTTGGTGGAAGTTTACTGTACTTTGTGTTAGAGTTTATGCTTCTTCTGTACGGTCATTCAAGTTTGTGCTTTTTTTTTATTTAATTCGAAATAAGATTCTTGAATTTATTGGGATGTGTATGCTTTGGATTTTTTAAAATGATTTATGGGTATCTGCTAGTTCCCATTGGTATAAGTAGTTGGTAACTCTGTCTATTAAGGCTGGGATAGAAGAGAATAAATAGCCTAGTGTTTTTGCTTCTGTTGTGATTTGAACATGAGACTACAGGTTGACTTAGTGGTTTAGTGGTTCAAAATTCATCTGGGGTTACAAGTTCAAATTCCGTGAACTGCATATTTACATTTCGAAACCCTTGAGTGACTGAAAATTCTGGATCCGCTATTGCTAGGCTATACCCTTGGGTTTATGTTGTTTAGGATTCTGAATTGTGTTTTACCTCTATTACTAGTAAGGGCTGCTTGTTGTATTGTGCGGTGTGCTAGTGGATAGAACAATTGAATTGAAATCACCAATGACAGATAGGTTGAGGATAATTGTGTTGGCTACCTCTGTCCCTTTCTCCTGTTCCATGGACTTAAAACGATGGAAATCTTACAATTATAAAGTGGTTATCAGGCTTACATACTAACATTCTGTATTCATAAGAGATTCTAGTCATTGACAGGGTGCTTTTGGTTACGTTAATAGTGGGATTTTAGGTGCCACAGGGTACTCTTGGAGTTTTTATTTTGAATAAAGAGGTTGTGGTCCATTCATGTATTTCATCCTAGAAGTGGCTTTGTTTACAAGGAAAATAAGTGATCTTACTTTAATAAGTGTTTCCAAGATGATCAAATTCAAATACCTTTTTTCTAGCTGGATAGCAGTCTTTTAATGCAGAATCTGATGTCAAAGTTGGTTATCATACATAATTTATTTGAAATGGCATTTAAAATCTTGATGTTGCACAAATCTCGTCATGGTAGCCTGGTGAGAGGGATTGAATATGTAGGAAGCTATGGTAACACATAATAAACTTGAAACCATATGGGAAGTGGTTTGCAAAAGGGAAGAAAGAAGCAACACAGGAAAATATCAGGCAAACCCTGCAGTGGTTTGAGCAATAAATCTCAATACACTGCTGATGACATGTCATCTTTGAACCATAAACAACTGTCATTCTTCTGAATCTTTAAACATAATTAGCAATAATCATAGAAAAGTATTTTTTTTCTTATTATGAGGTTGAAATCTGTGAAGTTGGGAATGCTGATTATACATTGTAATTCTGGTTTCACTTCCAGTTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAGGTATATCTTCTAAAGGACATTTGAGGTGAAGAGGAGTTGCACATTTTTATTTTAAGGAATTCACTTTTTTAATTTGTTTTATTTGGCTTCTCCCGTATTAGAATAGATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAGGTACATGTTATTTGTAGTTGCCCGCTAACTGTTTAGCTTGCTATTTCTTACTTAATTGTTCTGAAGGTCATCATTGTCTTTGAGTTGGGGAAGGGAAAGATTACTCATTACGGATATTATCACATCTTGCAGGTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAACAGTGTATAAGACTGCTTCCCCTTTGATAGTATTCTGCTTTTAATTTCTTATTGTGAGACTTAGGGTCTCCTAGGCATTTAGTAGGTTGGTTCGGTTATAGTTATTTCTAGCTCATATGGTTACATTAGTTTATCATCACTATGTTCAATCCCTAATGCGTGTGAGGATCTTCTTAGGTCATCATGTGCGATCACTGTGAATATCAATTTGAGAACTAAAATGCATAAGTACTCATCTCTGTTTTAAGTGTATCATCAGTGTAATATGAACATGTTCACTGATTCATATCTTTTCAACTTTAACAAAAGTGACCCCAAGAATTTGAGGCCAAAGCATGCTTTGGTTCAATGGCAAAGGTAGTACGACATGGGATGTGCTGTTGGTTCAGGTCACGAGTTCGCTGCTGCTGAATTAAGTTTGGCCTTTAAGTGGAGTAGGCTAGTGGAACGACCTGAAAATGTAAATAGAATATGGCCAAATTAGCTGCACCATTTTTTATTTAGTTTATTTTTCATAAGTTGAATTGTGTTTTAAACAATGAATATTGCTGCAGTTTCGTTTTCCTTTCAAACAAAGCATTTCTTAAAGGTAGAAAATGATGGTTAACCTATGGAAAAACAGCTTAATGTATCTCCAAATCCTAAATGGGTTCAGAAAGTCCAATTATGAAACACCTCGGCAAGAGGAATCAATTTTGGGTTGCTGCATCAAATCTGGTTGCTGCGATCTAGCTAGAATAATTGAATGGATAATTCAAAAACAAAAATTGAAAAAGGAGCCAGAGATGTGAATGTAATTTAGGATAAAGGCCTCCTCACTGGGACTGTTCCCTGATTCTAAAACTAGAAAATACTAGGTGTAATTGAAAACATGACTCTGTAATTATTACATTTCTAAGCATAGGGAAATCTGTATCAAATTTCACCAGTAGAAAACTTCATATAGTATGACTGGCGTCCCCAAAAAATGAGAAGACATGATTCATCTATGTAATGCTTTCTCTAACAGTCTCCAAAATCCCTTATTGGAAAATAATCTTGAGTAAATATTCGTATTCTTAATTTTGTTATGATATTATCACCTAATAATGAACAAAACATTATATAAACAGTTGCAATTCCCTATTTGAAGAAAAAAAGAGAGATCTTCTTTCACAAATGTGAAGTACTGTTCAAGGATCATCCACTAGTCCAACACAATATCACAACGAAATTGTTACAAAGAGGACAAGAGCCTCACTAAGAGTAATTCTACTAGCTATTCTTAGCTTATACTTGCAAATACTTTGAAAATAACATTTTCAATCCTGAAAGGTGATTGATCTGTCAAAAGAGTATTGTCTTTTGATTTTCATTTTTTTCCTTTTTCACAGATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATGGTATTAATAGGCCAACAGCTTTCGTCATCTTGACATTGTTTGGATTTCAGACAGTACTACACTGGATTTACATATTTGTTCCACAATTTTATTCTGTTTTTTTTCCAATTAATAGAGATGGGCA</genome_strand>
        <mrna_strand>TCCTATATGGCTGTCTCCATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATACCCAACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGTTGCTGGCAAATATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACATCTGGTGAAGACCCCATGCATAGCCCAAATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG..........................................................................................................ATCCATTAGTAGATCGGGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAACAAAAG....................................................................................................................................GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGCAAGAAAGAGAAGCTCATTGCGAAGCTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAACACATTGATGAAGTCGTACGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATG...................................................................................................................AGATGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367350" ref_strand="+" ref_description="SGN-E367350 [cLPT-7-K19]">
      <seq>tttaaagttgctggcaaacataaacatcatgggtgatggtcctcgaggaatagaggtgtttgaagatcattttcaagcttcaacatctggtgaagaccccatgcatagcccagatttatctaaatatattggaagtaatgattctttaagatccattagtagatcgtggactagaagaaaattgaaaggggctgcttcaattttgaatatgtttagcctcaacaagctaccttggatgtctggcacagatggtcaagaaaaggtagtcttaactgctgcagaagtagaatctcttcgatcagaactcggtgctttggaagaaagagaagctcattgcaaagctcagtaagatttgatacccccttttgtgggctcgcttgtgccttatgtgacctattctgtttttccttatatataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="77280" stop="76024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76980" g_stop="76831" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76724" g_stop="76613" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="262" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76480" g_stop="76324" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="419" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E367350" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76980" e_stop="76831"/>
          <exon e_start="76724" e_stop="76613"/>
          <exon e_start="76480" e_stop="76324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAGGTATATCTTCTAAAGGACATTTGAGGTGAAGAGGAGTTGCACATTTTTATTTTAAGGAATTCACTTTTTTAATTTGTTTTATTTGGCTTCTCCCGTATTAGAATAGATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAGGTACATGTTATTTGTAGTTGCCCGCTAACTGTTTAGCTTGCTATTTCTTACTTAATTGTTCTGAAGGTCATCATTGTCTTTGAGTTGGGGAAGGGAAAGATTACTCATTACGGATATTATCACATCTTGCAGGTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAAC</genome_strand>
        <mrna_strand>TTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACATCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG..........................................................................................................ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG....................................................................................................................................GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623208" ref_strand="+" ref_description="SGN-E623208 [88298]">
      <seq>cttactacagatactcagcaatagtaactaacaagtcttctaagacattgaagaacttgaagctttcagtatcccagctctatggttctctctggggtctttcaaagtacggtgactcctacatgtttccagcctggatcaactcgttaccagctggaaaaagcctcgagtttgtttacattcacactgctaattctcctgcagtggtctccgtatcaagctacactcttgactaaaacgcgagaattttcacttttcaagggtttaaatgtaagatttgtgcagcttgtttgtgatttttcaacttctggttgctttgtagtttgagttattagtgctttagctgatgaagtaaggcggatatttggatgaagaaaggagcgaagagacgaattaaaacaagtgctcatcctctttcttctccatttcattttgtcacaagatccatagtcatgtatttgaaagaaagttgcttctccacagagagttcatagatggaagtcttcatttcctttgtaatttacgcaactcaaggttttcgtgtttataatattttcttctctgattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="85927" stop="84751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85627" g_stop="85052" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="579"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E623208" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85627" e_stop="85052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTACAGATACTCAGCAATAGTAACTAACAAGTCTTCTAAGACATTGAAGAACTTGAAGCTTTCAGTATCCCAGCTTTATGGTTCGCTCTGGGGTCTTTCAAAGTACGGTGACTCCTACGTGTTTCCAGCCTGGATCAACTCGTTACCAACTGGAAAAAGCCTCGAGTTTGTTTACATTCACACTGCTAATTCTCCTGCAGTGGTCTCAGTATCAAGCTACACTCTTGACTAAAACGAGAGAATATTCACTTTTCGAGGGGTTTAAATGTAAGATTTGTGCAGCTTGTTTGTAATTTTTCAACTTCTAGTTGCTTTGTAGTTTGGTTATTACTTATCAGTGTTTTAGTTGATGAAGTAAGGCGGATATTTGGACGAAGAAAGGAGCGAAGAGACGAATTAAAACAAGTGCTCATCCTCTTTCTTCTCCACTTCATTTTGTCACAAGATCCATAGTCATGTATTTGAAAGAAAGTTGCTTCTCCACAGAGAGTACATATATGGAAGTCTTCATTTCCTTTGTAACTTATGCAACCTCAACGTTTTCGTGTTTATAATATTTTCTCCTCTGATTC</genome_strand>
        <mrna_strand>CTTACTACAGATACTCAGCAATAGTAACTAACAAGTCTTCTAAGACATTGAAGAACTTGAAGCTTTCAGTATCCCAGCTCTATGGTTCTCTCTGGGGTCTTTCAAAGTACGGTGACTCCTACATGTTTCCAGCCTGGATCAACTCGTTACCAGCTGGAAAAAGCCTCGAGTTTGTTTACATTCACACTGCTAATTCTCCTGCAGTGGTCTCCGTATCAAGCTACACTCTTGACTAAAACGCGAGAATTTTCACTTTTC-AAGGGTTTAAATGTAAGATTTGTGCAGCTTGTTTGTGATTTTTCAACTTCTGGTTGCTTTGTAGTTT-G-----AGTTATTAGTGCTTTAGCTGATGAAGTAAGGCGGATATTTGGATGAAGAAAGGAGCGAAGAGACGAATTAAAACAAGTGCTCATCCTCTTTCTTCTCCATTTCATTTTGTCACAAGATCCATAGTCATGTATTTGAAAGAAAGTTGCTTCTCCACAGAGAGTTCATAGATGGAAGTCTTCATTTCCTTTGTAATTTACGCAA-CTCAAGGTTTTCGTGTTTATAATATTTTCTTCTCTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446896" ref_strand="+" ref_description="SGN-E446896 [cSTA-23-M8]">
      <seq>gagagaactagtctcgagtttttnntnnnnnnnnnncagagaagaaaatattataaacacgaaaaccttgagttgcgtaaattacaaaggaaatgaagacttccatctatgaaaactctgtggagaagcaactttctttcaaatacatgactatggatcttgtgacaaaatgaaatggagaagaaagaggatgagcacttgttttaattcgtctcttcgctcctttcttcgtccaaatatccgccttacttcatcagctaaagcactaataactcaaactacaaagcaaccagaagttgaaaaatcacaaacaagctgcacaaatcttacatttaaacccttgaaaagtgaaaattctcgcgttttagtcaagagtgtagcttgatacggagaccactgcaggagaattagcagtgtgaatgtaaacaaactcgaggctttttccagctggtaacgagttgatccaggctggaaacatgtaggagtcaccgtactttgaaagaccccagagagaaccatagagctgggatactgaaagcttcaagttcttcaatgtcttagaagacttgttagttactattgctgagtatctgtagtaagttttcccctcgcgaacccatgaagttgtttccttttgctcaatagcaatgtcagaagctggagctggagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="84756" stop="85992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85059" g_stop="85671" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="644" r_length="605" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E446896" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85059" e_stop="85671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAAATATTATAAACACGAAAACGTTGAGGTTGCATAAGTTACAAAGGAAATGAAGACTTCCATATATGTACTCTCTGTGGAGAAGCAACTTTCTTTCAAATACATGACTATGGATCTTGTGACAAAATGAAGTGGAGAAGAAAGAGGATGAGCACTTGTTTTAATTCGTCTCTTCGCTCCTTTCTTCGTCCAAATATCCGCCTTACTTCATCAACTAAAACACTGATAAGTAATAACCAAACTACAAAGCAACTAGAAGTTGAAAAATTACAAACAAGCTGCACAAATCTTACATTTAAACCCCTCGAAAAGTGAATATTCTCTCGTTTTAGTCAAGAGTGTAGCTTGATACTGAGACCACTGCAGGAGAATTAGCAGTGTGAATGTAAACAAACTCGAGGCTTTTTCCAGTTGGTAACGAGTTGATCCAGGCTGGAAACACGTAGGAGTCACCGTACTTTGAAAGACCCCAGAGCGAACCATAAAGCTGGGATACTGAAAGCTTCAAGTTCTTCAATGTCTTAGAAGACTTGTTAGTTACTATTGCTGAGTATCTGTAGTAAGTTTTCCCCTCGTGTACCCATGAAGTTGTTTCCTTTTGCTCAATA</genome_strand>
        <mrna_strand>AGAAGAAAATATTATAAACACGAAAACCTTGA-GTTGCGTAAATTACAAAGGAAATGAAGACTTCCATCTATGAAAACTCTGTGGAGAAGCAACTTTCTTTCAAATACATGACTATGGATCTTGTGACAAAATGAAATGGAGAAGAAAGAGGATGAGCACTTGTTTTAATTCGTCTCTTCGCTCCTTTCTTCGTCCAAATATCCGCCTTACTTCATCAGCTAAAGCAC---TAA-T-A-ACTCAAACTACAAAGCAACCAGAAGTTGAAAAATCACAAACAAGCTGCACAAATCTTACATTTAAA-CCCTTGAAAAGTGAAAATTCTCGCGTTTTAGTCAAGAGTGTAGCTTGATACGGAGACCACTGCAGGAGAATTAGCAGTGTGAATGTAAACAAACTCGAGGCTTTTTCCAGCTGGTAACGAGTTGATCCAGGCTGGAAACATGTAGGAGTCACCGTACTTTGAAAGACCCCAGAGAGAACCATAGAGCTGGGATACTGAAAGCTTCAAGTTCTTCAATGTCTTAGAAGACTTGTTAGTTACTATTGCTGAGTATCTGTAGTAAGTTTTCCCCTCGCGAACCCATGAAGTTGTTTCCTTTTGCTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747155" ref_strand="+" ref_description="SGN-E747155 [GI|11139235]">
      <seq>caggtacggtgactcctacgtgtttccagcctggatcaactcgttaccaactggaaaaagcctcgagtttgtttacattcacactgctaattctcctgcagtggtctcagtatcaagctacactcttgactaaaacgagagaatattcacttttcgaggggtttaaatgtaagatttgtgcagcttgtttgtaatttttcaacttctagttgctttgtagtttggttattacttatcagtgttttagttgatgaagtaaggcggatatttggacgaagaaaggagcgaagagacgaattaaaacaagtgctcatcctctttcttctccacttcattttgtcacaagatccatagtcatgtatttgaaagaaagttgcttctccacagagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="85823" stop="84833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85524" g_stop="85133" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E747155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85524" e_stop="85133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTACGGTGACTCCTACGTGTTTCCAGCCTGGATCAACTCGTTACCAACTGGAAAAAGCCTCGAGTTTGTTTACATTCACACTGCTAATTCTCCTGCAGTGGTCTCAGTATCAAGCTACACTCTTGACTAAAACGAGAGAATATTCACTTTTCGAGGGGTTTAAATGTAAGATTTGTGCAGCTTGTTTGTAATTTTTCAACTTCTAGTTGCTTTGTAGTTTGGTTATTACTTATCAGTGTTTTAGTTGATGAAGTAAGGCGGATATTTGGACGAAGAAAGGAGCGAAGAGACGAATTAAAACAAGTGCTCATCCTCTTTCTTCTCCACTTCATTTTGTCACAAGATCCATAGTCATGTATTTGAAAGAAAGTTGCTTCTCCACAGAGAGT</genome_strand>
        <mrna_strand>CAGGTACGGTGACTCCTACGTGTTTCCAGCCTGGATCAACTCGTTACCAACTGGAAAAAGCCTCGAGTTTGTTTACATTCACACTGCTAATTCTCCTGCAGTGGTCTCAGTATCAAGCTACACTCTTGACTAAAACGAGAGAATATTCACTTTTCGAGGGGTTTAAATGTAAGATTTGTGCAGCTTGTTTGTAATTTTTCAACTTCTAGTTGCTTTGTAGTTTGGTTATTACTTATCAGTGTTTTAGTTGATGAAGTAAGGCGGATATTTGGACGAAGAAAGGAGCGAAGAGACGAATTAAAACAAGTGCTCATCCTCTTTCTTCTCCACTTCATTTTGTCACAAGATCCATAGTCATGTATTTGAAAGAAAGTTGCTTCTCCACAGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280355" ref_strand="+" ref_description="SGN-E280355 [cLER-1-E12]">
      <seq>taactcatgcatatcagttattcgagtttgcagacaaatacagaggcaagtatgatagcagtattactgtggcccagaagtactatcgatctgttagtggatacgcggacgaattactgtgggccgctgcttggctgtacaaggcatctaacaagccatattacttgaattacctaggggagaacggcgatgcacttggtggaaccggttggtccatgaccgaatttggttgggacgtcaagtatgctggtgtccagactcttgctgctaagttcctgatgcaaggaaatgctggtaaccatgctgctgtgtttgagaagtaccaagaaaaggctgagaattttatgtgtgcatgtctcggaaagggtaaccaaaacatccacaagagtccaggaggtctcattttcaggcaaagatggaacaacatgcaatttgtcacaagtgcttcattccttgcaactgtttactctgactatttggcatctgctggaaaatccctcaagtgtgcatccggtcctgtatcatcacccgagctcctggactttgccaagtcacaggttgactatctacttggagataatccaagagcgacaagttacatggtgggatacggtaacaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="87943" stop="86182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87815" g_stop="87799" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87798" i_stop="87638" i_length="161">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87548" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="107" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87547" i_stop="87443" i_length="105">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87442" g_stop="87278" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="272" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87277" i_stop="87070" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87069" g_stop="86785" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="557" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86784" i_stop="86548" i_length="237">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86547" g_stop="86482" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="623" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E280355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87815" e_stop="87799"/>
          <exon e_start="87637" e_stop="87548"/>
          <exon e_start="87442" e_stop="87278"/>
          <exon e_start="87069" e_stop="86785"/>
          <exon e_start="86547" e_stop="86482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCATGCATATCAGGTCAGCGCGATTTTTACATGACTTTAAAAGAGTAACATAAACTAAGAATGCAAGAATACTTAACAAATTGCATACTATCAGATCACTTAAAAGATAAGTTATTTACATTACATTATTTGTCTCTTCATTTCCGTAACTTGTGGTTTTGCTGTTGTTTTCAGTTATTCGAGTTTGCAGACAAATACAGAGGCAAGTATGATAGCAGTATTACTGTGGCCCAGAAGTACTATCGATCTGTTAGTGGATACGCGGTATGTGTGATTGTTTCATTAAGAAATACTATGTGTGACTCACATATGTTGTATTCATCTTGTCATTTTCACAACATTTAATCAAGAAACTTTTGATTTTGACAGGACGAATTACTGTGGGCCGCTGCTTGGCTGTACAAGGCATCTAACAAGCCATATTACTTGAATTACCTAGGGGAGAACGGCGATGCACTTGGTGGAACCGGTTGGTCCATGACCGAATTTGGTTGGGACGTCAAGTATGCTGGTGTCCAGACTCTTGCTGCTAAGGTCAATCACCTAAAACCATACACTTCATTTCGTAATATTCTTGAATAATACTCTGTAGGTACACCATGATAAAACGAAAATGAAAATATATAGCATCTGCGTAACCAAAAGGCTATATAGAGTATTTTGGTCCAAATCTTAACGTACACACTAGCTCCGCCCCTATTACTATGCAAATCATTAATGTATTTCGTGGATATTATTGCAGTTCCTGATGCAAGGAAATGCTGGTAACCATGCTGCTGTGTTTGAGAAGTACCAAGAAAAGGCTGAGAATTTTATGTGTGCATGTCTCGGAAAGGGTAACCAAAACATCCACAAGAGTCCAGGAGGTCTCATTTTCAGGCAAAGATGGAACAACATGCAATTTGTCACAAGTGCTTCATTCCTTGCAACTGTTTACTCTGACTATTTGGCATCTGCTGGAAAATCCCTCAAGTGTGCATCCGGTCCTGTATCATCACCCGAGCTCCTGGACTTTGCCAAGTCACAGGTAAATTTATACTCCCTCCGTTTCATTTTTGTGTGTCTTAGTTTGACTGGGCACGAAATTTAGGAAAAGTTAGGAATTCACCTTGGATCATATGGTGCGGAGTTAAAGATCGAGTTACTAAACATAGAAAGTGACACTCTTTTTTAAACAGACTAGAAATTTGTCAGGTGGAATGTTGGAGTTAAAGAGTCACTAAATACAATAAGTGACATTCTCAAGCATGTTTTATCATTTTAGGTTGACTATCTACTTGGAGATAATCCAAGAGCGACAAGTTACATGGTGGGATACGGTAACAATTAC</genome_strand>
        <mrna_strand>TAACTCATGCATATCAG.................................................................................................................................................................TTATTCGAGTTTGCAGACAAATACAGAGGCAAGTATGATAGCAGTATTACTGTGGCCCAGAAGTACTATCGATCTGTTAGTGGATACGCG.........................................................................................................GACGAATTACTGTGGGCCGCTGCTTGGCTGTACAAGGCATCTAACAAGCCATATTACTTGAATTACCTAGGGGAGAACGGCGATGCACTTGGTGGAACCGGTTGGTCCATGACCGAATTTGGTTGGGACGTCAAGTATGCTGGTGTCCAGACTCTTGCTGCTAAG................................................................................................................................................................................................................TTCCTGATGCAAGGAAATGCTGGTAACCATGCTGCTGTGTTTGAGAAGTACCAAGAAAAGGCTGAGAATTTTATGTGTGCATGTCTCGGAAAGGGTAACCAAAACATCCACAAGAGTCCAGGAGGTCTCATTTTCAGGCAAAGATGGAACAACATGCAATTTGTCACAAGTGCTTCATTCCTTGCAACTGTTTACTCTGACTATTTGGCATCTGCTGGAAAATCCCTCAAGTGTGCATCCGGTCCTGTATCATCACCCGAGCTCCTGGACTTTGCCAAGTCACAG.............................................................................................................................................................................................................................................GTTGACTATCTACTTGGAGATAATCCAAGAGCGACAAGTTACATGGTGGGATACGGTAACAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280391" ref_strand="+" ref_description="SGN-E280391 [cLER-1-F11]">
      <seq>taactcatgcatatcagttattcgagtttgcagacaaatacagaggcaagtatgatagcagtattactgtggcccagaagtactatcgatctgttagtggatacgcggacgaattactgtgggccgctgcttggctgtacaaggcatctaacaagccatattacttgaattacctaggggagaacggcgatgcacttggtggaaccggttggtccatgaccgaatttggttgggacgtcaagtatgctggtgtccagactcttgctgctaagttcctgatgcaaggaaatgctggtaaccatgctgctgtgtttgagaagtaccaagaaaaggctgagaattttatgtgtgcatgtctcggaaagggtaaccaaaacatccacaagagtccaggaggtctcattttcaggcaaagatggaacaacatgcaatttggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="-" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="87943" stop="86603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87815" g_stop="87799" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87798" i_stop="87638" i_length="161">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87637" g_stop="87548" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="107" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87547" i_stop="87443" i_length="105">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87442" g_stop="87278" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="272" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87277" i_stop="87070" i_length="208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87069" g_stop="86903" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="439" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="-" ref_id="SGN-E280391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87815" e_stop="87799"/>
          <exon e_start="87637" e_stop="87548"/>
          <exon e_start="87442" e_stop="87278"/>
          <exon e_start="87069" e_stop="86903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCATGCATATCAGGTCAGCGCGATTTTTACATGACTTTAAAAGAGTAACATAAACTAAGAATGCAAGAATACTTAACAAATTGCATACTATCAGATCACTTAAAAGATAAGTTATTTACATTACATTATTTGTCTCTTCATTTCCGTAACTTGTGGTTTTGCTGTTGTTTTCAGTTATTCGAGTTTGCAGACAAATACAGAGGCAAGTATGATAGCAGTATTACTGTGGCCCAGAAGTACTATCGATCTGTTAGTGGATACGCGGTATGTGTGATTGTTTCATTAAGAAATACTATGTGTGACTCACATATGTTGTATTCATCTTGTCATTTTCACAACATTTAATCAAGAAACTTTTGATTTTGACAGGACGAATTACTGTGGGCCGCTGCTTGGCTGTACAAGGCATCTAACAAGCCATATTACTTGAATTACCTAGGGGAGAACGGCGATGCACTTGGTGGAACCGGTTGGTCCATGACCGAATTTGGTTGGGACGTCAAGTATGCTGGTGTCCAGACTCTTGCTGCTAAGGTCAATCACCTAAAACCATACACTTCATTTCGTAATATTCTTGAATAATACTCTGTAGGTACACCATGATAAAACGAAAATGAAAATATATAGCATCTGCGTAACCAAAAGGCTATATAGAGTATTTTGGTCCAAATCTTAACGTACACACTAGCTCCGCCCCTATTACTATGCAAATCATTAATGTATTTCGTGGATATTATTGCAGTTCCTGATGCAAGGAAATGCTGGTAACCATGCTGCTGTGTTTGAGAAGTACCAAGAAAAGGCTGAGAATTTTATGTGTGCATGTCTCGGAAAGGGTAACCAAAACATCCACAAGAGTCCAGGAGGTCTCATTTTCAGGCAAAGATGGAACAACATGCAATTTGTCAC</genome_strand>
        <mrna_strand>TAACTCATGCATATCAG.................................................................................................................................................................TTATTCGAGTTTGCAGACAAATACAGAGGCAAGTATGATAGCAGTATTACTGTGGCCCAGAAGTACTATCGATCTGTTAGTGGATACGCG.........................................................................................................GACGAATTACTGTGGGCCGCTGCTTGGCTGTACAAGGCATCTAACAAGCCATATTACTTGAATTACCTAGGGGAGAACGGCGATGCACTTGGTGGAACCGGTTGGTCCATGACCGAATTTGGTTGGGACGTCAAGTATGCTGGTGTCCAGACTCTTGCTGCTAAG................................................................................................................................................................................................................TTCCTGATGCAAGGAAATGCTGGTAACCATGCTGCTGTGTTTGAGAAGTACCAAGAAAAGGCTGAGAATTTTATGTGTGCATGTCTCGGAAAGGGTAACCAAAACATCCACAAGAGTCCAGGAGGTCTCATTTTCAGGCAAAGATGGAACAACATGCAATTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704998" ref_strand="+" ref_description="SGN-E704998 [FA25DE06]">
      <seq>aagtaaagggacccccaaatgtccacttgctctgtatttttttcataaaaaatggagcaattttggaccattcagccatcggaagttccaataggcgatgcgttttggactctttctgattcacactttgcctattctcaaaaccccaccattgaatttttttttttctttccatttttttggtgggagatgatgaacaatatggaagatgagtactttaggagacaccataggcatgtgctcgaccacaatcagtgtagttcttcacttgttaaacgcatcaaagctcctgttaatcttgtatggccattggtgaaaaggtttgatcaaccacaaaggtacaagccatttgttaaaaaatgtgtcgtgcaaggggaccttgaaattgggagtgtgagaaaagtgaatgttaggtcaggtcttccagctaccaccagcaaggagaggttaaagcttctagatgacgaggaacacatctttggtgtaaaaattgttggtggagatcacaggcttcaaaactattcatcgattatcacggttcatccccaggtcattgacggaagacctggaacaattgtaatcgagtcatttgtagtagacatacccagatgggaatactaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="111873" stop="116481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112173" g_stop="112471" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="516" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.837" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116075" g_stop="116181" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="624" r_length="108" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E704998" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112173" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="116075" e_stop="116181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAAGGGACCCCCAAATGTCCACTTGCTCTGTATTTTTTTCATAAAAAATGGAGCAATTTTGGACCATTCAGCCATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAA-TTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATA-CCAGATGGGAATACTAAGGA</genome_strand>
        <mrna_strand>AAGTAAAGGGACCCCCAAATGTCCACTTGCTCTGTATTTTTTTCATAAAAAATGGAGCAATTTTGGACCATTCAGCCATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTTCTTTCCATTTTTTTGGTGGGAGATGATGAACAATATGGAAGATGAGTACTTTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAAAGCTCCTGTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCATTGGTGAAAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAAAAAATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAAAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAAAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAAATTGTTGGTGGAGATCACAGGCTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCATCGATTATCACGGTTCATCCCCAGGTCATTGACGGAAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCCAGATGGGAATACTAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717722" ref_strand="+" ref_description="SGN-E717722 [FC02CC01]">
      <seq>gggcgattggcggccaatcggccgaattgggaagttccaataggcgatgcgttttggactctttctgattcacactttgccttttctcaaaaccccaccattgaattttttttttctttccatttttttggttggagatgatgaacaatatggaagatgagtactttaggagacaccataggcatgtgctcgaccacaatcagtgtagttcttcacttgttaaacgcatcaaagctcctgttaatcttgtatggtcattggtgaaaaggtttgatcaaccacaaaggtacaagccatttgttagcaaatgtgtcgtgcaaggggaccttgaaattgggagtgtgaaaaaagtgaatgttaggtcaggtcttccagctaccaccagcaaggagaggttagagcttctagatgacgaggaacacatctttggtgtaaagattgttggtggagatcacaggcttcaaaactactcatcgattatcacggttcatcccgaggtcattgacgggagacctggaacaattgtaatcgagtcatttgtagtagacataccaaatgggaatactaaggacgaaacatgcttctttgtggaggccctcatccggtgtaacctcaaatcattagctgatgtatcaaagcgtttggcggtacagggccataccgaccctattgatagaatctagcttcacagtttttgcaaatgcagcagcgtgggcttatacgttttagctgctggagcgtacatggattttgattagattattcttgcaatggctatttctcattgtgaagaaccagtactgattctggccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="111951" stop="116856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112248" g_stop="112471" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="248" r_length="224" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="464" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116075" g_stop="116368" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="758" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116499" g_stop="116556" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="816" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E717722" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112248" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="116075" e_stop="116368"/>
          <exon e_start="116499" e_stop="116556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAGATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGC</genome_strand>
        <mrna_strand>AATTGGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTTTTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACTTTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAAAGCTCCTGTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTCATTGGTGAAAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAAATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAAAAAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAAATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAAAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAAATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG..................................................................................................................................ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718782" ref_strand="+" ref_description="SGN-E718782 [FC05DC01]">
      <seq>gggcgattggcggccaaatcggccgaattgatcggaagttccaataggcgatgcgttttggactctttctgattcacactttgccttttctcaaaaccccaccattgaattttttttttctttccatttttttggttggagatgatgaacaatatggaagatgagtacattaggagacaccataggcatgtgctcgaccacaatcagtgtagttcttcacttgttaaacgcatcaaagctcctgttaatcttgtatggtcattggtgagaaggtttgatcaaccacaaaggtacaagccatttgttagcaaatgtgtcgtgcaaggggaccttgaaattgggagtgtgaaaaaagtgaatgttaggtcaggtcttccagctaccaccagcaaggagaggttagagcttctagatgacgaggaacacatctttggtgtaaagattgttggtggagatcacaggcttcaaaactactcatcgattatcacggttcatcccgaggtcattgacgggagacctggaacaattgtaatcgagtcatttgtagtaaacataccagatgggaatactaaggacgaaacatgcttctttgtggaggccctcatccggtgtaacctcaaatcattagctgatgtatcaaagcgtttggcggtacagggccataccgaccctattgatagaatctagcttcacagtttttgcagatgcagcagcgtgggcttatacgttttagctgctggagcgtacatggattttgattagattattcttgcaatggctatttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="111950" stop="116824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112248" g_stop="112471" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="252" r_length="224" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="468" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116075" g_stop="116368" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="762" r_length="294" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116499" g_stop="116524" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="788" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E718782" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112248" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="116075" e_stop="116368"/>
          <exon e_start="116499" e_stop="116524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAGATTATTCTTGCAATGGCTATTTCTCA</genome_strand>
        <mrna_strand>TGATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTTTTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAAAGCTCCTGTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAAATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAAAAAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAAACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAAAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG..................................................................................................................................ATTATTCTTGCAATGGCTATTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204082" ref_strand="+" ref_description="SGN-E204082 [cLEC-27-K11]">
      <seq>ataggcgatgcgttttggactctttctgattcacactttgcctattctcaaaaccccaccattgaattttttttttctttccatttttttggttggagatgatgaacaatatggaagatgagtacattaggagacaccataggcatgtgctcgaccacaatcagtgtagttcttcacttgttaaacgcatcagagctcctgttaatcttgtatggtcattggtgagaaggtttgatcaaccacaaaggtacaagccatttgttagcagatgtgtcgtgcaaggggaccttgaaattgggagtgtgagagaagtgaatgttaggtcaggtcttccagctaccaccagcaaggagaggttagagcttctagatgacgaggaacacatctttggtgtaaagattgttggtggagatcacaggcttcagaactactcatcgattatcacggttcatcccgaggtcattgacgggagacctggaacaattgtaatcgagtcatttgtagtagacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="111963" stop="116461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112263" g_stop="112471" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="425" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116075" g_stop="116161" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="512" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E204082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112263" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="116075" e_stop="116161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATA</genome_strand>
        <mrna_strand>ATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711079" ref_strand="+" ref_description="SGN-E711079 [FA57DG12]">
      <seq>gcgatgcgttttggactctttctgattcacactttgccttttctcaaaaccccaccattgaattttttttttctttccatttttttggttggagatgatgaacaatatggaagatgagtacattaggagacaccataggcatgtgctcgaccacaatcagtgtagttcttcacttgttaaacgcatcaaagctcctgttaatcttgtatggtcattggtgagaaggtttgatcaaccacaaaggtacaagccatttgttagcagatgtgtcgtgcaaggggaccttgaaattgggagtgtgagagaagtgaatgttaggtcaggtcttccagctaccaccagcaaggagaggttagagcttctaaatgacgaggaacacatctttggtgtaaagattgttggtggagatcacaggcttcagaactactcatcgattatcccccccccccccccccccattgacgggagacctggaacaattgtaatcgagtcatttgtagcagacataccacatgggaatactaaggacgaaacatgcttctttgtggaggccctcctccggtgtaacctcaaatcattagctgatgtatcaaagcgtttggcggtacagggccataccgaccctattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="111967" stop="116584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112267" g_stop="112471" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="421" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116075" g_stop="116284" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="631" r_length="210" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E711079" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112267" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="116075" e_stop="116284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGAT</genome_strand>
        <mrna_strand>GCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTTTTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAAAGCTCCTGTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAAATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCGATTATCCCCCCCCCCCCCCCCCCCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGCAGACATACCACATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCCTCCGGTGTAACCTCAAATCATTAGCTGATGTATCAAAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589151" ref_strand="-" ref_description="SGN-E589151 [42719]">
      <seq>taggagacaccatagggcatgtgcttcaacgaacaaatcagtgtagttctttcacgttgttaaacgcatcagagctcctgtttaatcttgtatggtcatttggtgagaagatttgatcaaccacaaaggtacaagccattcgttagcagatgcgttgtgcaaggggaccttgaaattgggagtgtgagagaagtgaatgttaggtcgggtcttccagctaccaccagcaaggagaggttagagcttctagatgacgaggaacacatctttggcgtaaagattgttggtggagatcacaggcttcaggaaatggagaagtgaatgcctggtcaaccttccctcatagtaagagacgtttctgtggtttcgtttcttgaagagtcatcgatgcagaccttccatgagggtatagcatgggatgtagggatccttttacctgtaactactcatcaattatcactgttcatcccgaggtcattgacggtagacctggaacaattgtaatcgagtcatttgtagtagacataccagatgggaataccaaggacgaaacatgcttctttgtggaggccctcatccggtgtaacctcaaatcgttagctgatgtatcagagcgtttggcggtgcagggccataccgagcctattgatagaatgtagcttcacagtttttaccaatgcagcagcgtgggcttatacgtttttgctgctggagcatacatggattttgattaggtgagtagagcgactggtattatgattgtcttcctcgatctcagacgagtgtgtgtatatatatatttttttgttgatgcttccttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="112090" stop="116757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112390" g_stop="112471" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.805"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574">
            <donor d_prob="0.981" d_score="0.87"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113046" g_stop="113261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="306" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113262" i_stop="114627" i_length="1366">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.291" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114628" g_stop="114705" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="382" r_length="76" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114706" i_stop="115566" i_length="861">
            <donor d_prob="0.683" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115567" g_stop="115616" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="434" r_length="52" r_score="0.580"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115617" i_stop="115708" i_length="92">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115709" g_stop="115715" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="440" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115716" i_stop="116074" i_length="359">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.837" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116075" g_stop="116468" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="831" r_length="391" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E589151" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112390" e_stop="112471"/>
          <exon e_start="113046" e_stop="113261"/>
          <exon e_start="114628" e_stop="114705"/>
          <exon e_start="115567" e_stop="115616"/>
          <exon e_start="115709" e_stop="115715"/>
          <exon e_start="116075" e_stop="116468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAGACACCATA-GGCATGTGC-TCGAC-CACA-ATCAGTGTAGTTCT-TCAC-TTGTTAAACGCATCAGAGCTCCTG-TTAATCTTGTAAGCTTAATCCATTATGTACTTGATCTTTTCATATTTTCTCAGATCTATATGTGATCATCTTGTTACAAAGGCTTTCTAGGATTATTCATATAGGGTTATTTACATTGTAGAAAAATAAGATTTGGGATTTTATCTTTTTGGAAATTTTTTTTGGTTGAATTGTGTAATTTATGATATTGCTGCTATATTGAAATTTGAGGTAAAGAAGAAAAAGAACGTATTTTTATGTGGAAGATAGTGTTGATTGTTTCAATGAAGTGGGTTGATAATTACTAGGGGTATCACGTTGAATTTCTAGAAGAGACAAAAATATTAGGTGATTCTTTCCATCTTGTTCGAGCTTTGGTGGATAGAGTTGCTCCACATATGCTACAGTTATAAAAAGGAATGTGTAAGGTAGTGTTAATTGTTTGGTTACGTAGAATGTTTGCATGGTTTGACTTTGGAGTTGGCCTTGGTAAACCAAATTGCATTATGTTTTTGATTTCATGTGTAGCTAATATCAGATGGGGGACTGATTGTAACATATATTGTTCTTATGGAGGTCTTTCTGATTTGGTATGTTTCATAGGTATGGTCA-TTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAGGTATGCATCTGTTGTTTTCTCATAGAATATACATGGATGCATTGGATGGACTTTATATGTTGGCTAAGTTGTAACATCAGGTGTTTTTTTGTATCTTATGATTATTAATAAGTGAAGTTGTGTTTAATGGTAAGAAACCATGTTTTCCACTAACCTTCTTGGCTCGTGTATCTGCATGTACTTCAATAACACTGACAACTGTATTTCCTTCTCTTGCTGCGGTTGGGTGGGGGACATGCTTTTCATTGTAAAAGATTTATACGTACTTGAATCTTAGCTATTTTCTCTCAGTTACTCCAACTAGAGATGATGTTACACCATTCCACTATGCTGATTATCCTCTTCCTCCTTCTCACCTCTTACCCCTTACTCGTGGAGGTAGAGAGGCTGTTTCTGAAACCACAATACTAACTATCTCAATATACGAGGTAAATTTTTAACATTCTATTTTGATAGAGCTGATTAATATCAAAGACTCCTTATAAGTTAAGCATCCATTATGGGGTGAGAGTCACTAGGTTATATTATTTTATAAATGTGTACAAACAGAATTTGAACTTGAAACTTCATGTGTTTAGCATTCATTAATGTCACCTTTGCTTATTCAAATGCCTTCAAGGTATGTGTATGTGTACGCCTGATAGAGATAGAGAGTTTAAAGTAGGGGTGGGAAAAGCACAAACAATGAAGTTTTGAATTAGAAGTTACCTGAGATGGTTATAGTGATCATAAAGTGTCCATTCAATAAAGAAATTCAAGCTTGAGCCTAAAAAATGTCTGCTGAAGTTTAAATGGAAGTAACTTGAGTTTTACTCGCACCTTGTCTGCTTCTCATGTACAACCATTTTCTTTATTGCGCCAGACTCGTCTTACTAAGTTAATACTTATGTAATTGTGTTTGAATATCAGATGGAAGCTGCTTGCATATTGTGTTCCATACTATTCTTATTACTTTTCTTGAGCAATCATGGACCTCCTATCCCATTTTACATGATGGTGTTTGACTGAATCAGTATGAAATTTTTTGACACAAACTAATTATATCAAATTAGTAAAGTTGACCTTGATAGCAACAATTAAATGGGAGATGACAAGAGTTCCACATATCTCTTCATCTTCTGTTTAATAAAAAAAATCAGTTTTGTTCCAAATAAGTCATGTCAATAGCATTTAAAATGGGATGTCTATCTTTTTACACAAAATGAAGAGAATAGTGTCCCATAAACTGGAATAGAGGAAGTTTTAGTATTTTTTAAGTTAGATCCCAAATGGTTTGTGTTGTGGAACTTTAGCGGCTCAGGAGGTGAGCATGTTGAGCTGTTCCATTCATCAAATATTCTGTTCTTCATTACTGTTCCTAGGTTAGGAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGATGTAGGGATCCTTTTACCTTTATAAGATTTCACAACTTCTATTTCTATCATCTATGAATGTTTAATGCTAATATTTGTCAACTGGAACGATGAAAAGCAAAATGACCTGCTGAATATGAATTCGTATGTATGGTTAGATAATATTCCTCTGGGAGAGGGCAGAGGCTAATACTAAGTCCAAATAATCTACCTCACATCATCTTAACTCCAATTTATTGAGCTTCTGGTGTAATAGTAGTTGGATTGACAATGAAGATCATACTTTTTTTATTTCTTATTCCTTATGGGGGTGAAGATGTAATGCCGTAATCTTTTGCCTTTTCTACTTCCCAGTGCCTTCTGGGTACAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGA--CAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGA</genome_strand>
        <mrna_strand>TAGGAGACACCATAGGGCATGTGCTTCAACGAACAAATCAGTGTAGTTCTTTCACGTTGTTAAACGCATCAGAGCTCCTGTTTAATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTCATTTGGTGAGAAGATTTGATCAACCACAAAGGTACAAGCCATTCGTTAGCAGATGCGTTGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCGGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGCGTAAAGATTGTTGGTGGAGATCACAGGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGAGAAGTGAATGCCTGGTCAACCTTCCCTCATAGTAAGAGACGTTTCTGTGGTTTCGTTTCTTGAA-GAG-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATGCAGACCTTCCATGAGGGTATAGCATGGGATGTAGGGATCCTTTT............................................................................................-ACCTGT.......................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCAATTATCACTGTTCATCCCGAGGTCATTGACGGTAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACCAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCGTTAGCTGATGTATCAGAGCGTTTGGCGGTGCAGGGCCATACCGAGCCTATTGATAGAATGTAGCTTCACAGTTTTTACCAATGCAGCAGCGTGGGCTTATACGTTTTTGCTGCTGGAGCATACATGGATTTTGATTAGGTGAGTAGAGCGACTGGTATTATGATTGTCTTCCTCGATCTCAGACGAGTGTGTG--TATATATATAT-TTTTTTGTTGATGCTTCCTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439559" ref_strand="+" ref_description="SGN-E439559 [cSTA-12-L3]">
      <seq>cgagttataatgaaatttaccttaccgtgaaaagaacagtttattgagctttgtgtatactccttttctgtccatggtcttatgacctcttatcatgtgcatgtaccacctcattaggtttggtgtttgtcaggaatcttttgttttgtttagttcctttatataccactagaaaatgtagagaatcttttatggacctctaatttttttttcttaatatatacatttattgagtattagactgaagcatatcaagatggagttattcaagctattttacttccagaaaaaaagaagtgcagatggagtggaatgaatgttgaaaattcttaaagccatcaacaactagttttggattaaggtagtagcagttgtagttgttggactgatagctcagatggttagcatattgaactgttccatggttgctttttggctaagaaatggagaactaagacgtgaatgcaaggatagcttttcctccatgagaagaggggtttctgttgtttcatatcgaagaatcgacagaaattcagtgaaaatgtgtcaagggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="114751" stop="115904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115051" g_stop="115604" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E439559" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115051" e_stop="115604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGA-CTCTTATCATGTGCATGTA-CA-CTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGC</genome_strand>
        <mrna_strand>CGAGTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACCTCTTATCATGTGCATGTACCACCTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611401" ref_strand="+" ref_description="SGN-E611401 [61152]">
      <seq>gttatttcaagctattttacttccagaaaaaaagaggttccagatggagtggaatgaatgttgaaaattcttaaagccatcaacaactagttttggattaaggtagtaacagttgtagttgttggactgattgctcagatgggtagcatattgaactgttccatggttgctttttggctaaaaaatggagaactaagacgtgaatgcaaggatagcttttcctccgtgaaaagaggggtttctgttgtttcatatcagcgaaaatgtggtatgggatggttaggaccatttttccaaaacaagattgtgcagctcctctctaccccttctcttattaaaactactcatcaattatcactgttcatcccgaggtcattgacgggagacctggaacaattgtaatcgagtcatttgtagtagacataccagatgggaataccaaggacgaaacatgcttctttgtggaggccctcatccggtgtaacctcaaatcgttagctgatgtatcagagcgtttggcggtgcagggccataccgagcctattgatagcaatgtcagcttcacagtttttaccaatgcagcagcgtgggccttatacgtatattgctgctggagcataacatggattttgattagcattattcttgcaatggctatttctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="115009" stop="116826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115309" g_stop="115662" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115663" i_stop="116074" i_length="412">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.837" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116075" g_stop="116368" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="637" r_length="299" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="0.81"/>
            <acceptor a_prob="0.647" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116499" g_stop="116526" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="666" r_length="29" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E611401" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115309" e_stop="115662"/>
          <exon e_start="116075" e_stop="116368"/>
          <exon e_start="116499" e_stop="116526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTA-TTCAAGCTATTTTACTTCCAGAAAAAAAGAAG-TGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAAATATGTTATCCAAACATCTGATAATCAAATGATGCAAAATTCACAGGACCTGCCTAGAGTATGAATTGTAAGAATCGATAAATAAGTCCCCTATGCTTGCACATTTCAAGTCTAAGGAACCTACCTTGCATTATCTAAACTCGATTTATTAAGCTCTCTATGAACTCCGTTTCTTTTTTGTCTTTTTCTGTTTCTTTACCAAATACATATAGCTCATCATGAAAATATTGTGCTTCCATTTACATAATGTGAGCTAACTTTTCTTCCACGCTGTGTAGTAAAATTATGGTAGTATGTTTTTGCATCATTTTCTGGAGTGCATATTTTTTGTTGGAAAGCATAAGTATTACTCAATATATATATACTGAACTTGTTAGCAAGTGATTTCTCGTTTTCTATGAAAACATGGCAGAACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAG-AATCT-AGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGG-CTTATACGT-TTTAGCTGCTGGAGCGT-ACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAG-ATTATTCTTGCAATGGCTATTTCTCATT</genome_strand>
        <mrna_strand>GTTATTTCAAGCTATTTTACTTCCAGAAAAAAAGAGGTTCCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAACAGTTGTAGTTGTTGGACTGATTGCTCAGATGGGTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAAAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCGTGAAAAGAGGGGTTTCTGTTGTTTCATATC--AG---CG--A-AAA-T--GTG-GTATG-G--GATGG-T--TAGGACCATTTTTCCAAAACAAGATTGTGCAGCTCCTCTCTACCCCTTCTCTTATTAA............................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTCATCAATTATCACTGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACCAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCGTTAGCTGATGTATCAGAGCGTTTGGCGGTGCAGGGCCATACCGAGCCTATTGATAGCAATGTCAGCTTCACAGTTTTTACCAATGCAGCAGCGTGGGCCTTATACGTATATTGCTGCTGGAGCATAACATGGATTTTGATTAG..................................................................................................................................CATTATTCTTGCAATGGCTATTTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610543" ref_strand="+" ref_description="SGN-E610543 [57706]">
      <seq>ttacaaggacgaaacatgcttctttgtggaggccctcatccggtgctaacctcaattcgttagctgatgtatcagagcgtttggcggtgcagggccataccgagcctattgatagaatgtagcttcacagtttttaccaatgcagcagcgtgggcttatacgtttttgctgctggagcatacatggattttgattagattattcttgcaatggctatttctcattgtgaagaaccagtactgattctggctgtgcaattatattgagccttgtaaatatttgctactggatgagcttttgttgtcataagaatcatatcctactctgctgtggcaaaggtgtgctatacactcgtctcgtctagaggctgatgtgctaatagtattccctagactgtaactgtgccttttttgtttctgtacttgtacaagaaaaaagttccttgtttgttgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="115873" stop="117066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116172" g_stop="116368" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="0.96"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116499" g_stop="116763" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="454" r_length="257" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="466"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E610543" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116172" e_stop="116368"/>
          <exon e_start="116499" e_stop="116763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTG-TAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAGATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAA-GATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAG-ATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTT</genome_strand>
        <mrna_strand>TTAC-AAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGCTAACCTCAATTCGTTAGCTGATGTATCAGAGCGTTTGGCGGTGCAGGGCCATACCGAGCCTATTGATAGAATGTAGCTTCACAGTTTTTACCAATGCAGCAGCGTGGGCTTATACGTTTTTGCTGCTGGAGCATACATGGATTTTGATTAG..................................................................................................................................ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCTGTGCAATTATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTTGT-TGTCATAAGAATCATATCCTACTCTGCTGTGGCAAAGGTGTGCTATACACTCGTCTCGTCTAGAGGCTGATGTGCTAATAG---TA---T-T-CCCTAG-ACTGTAACTGTGCCTTTTTTGTTTCTGTACTTGTACAAGAAAAAAGTTCCTTGTTTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295459" ref_strand="+" ref_description="SGN-E295459 [cLET-23-P2]">
      <seq>ggatcccccgggctgcagggtttggcggtacagggccataccgaccctattgatagaatctagcttcacagtttttgcagatgcagcagcgtgggcttatacgttttagctgctggagcgtacatggattttgattagattattcttgcaatggctatttctcattgtgaagaaccagtactgattctggccgtgcaagatattgagccttgtaaatatttgctactggatgagctttcgtaagtcataagatcatatcctaccctactgtggcaaaggcgtgctatacactcgtctcatctagaggctgatgtgctaatagtattatcttatcccctagaactgtaactgtgccttttttgtttttgtacctgtacaagaaaaaagttccttgtttgttgttgtatcttttatccttcgctctgtgttgtatatgatttcatggtgcattatttgtttacaagaacatgtggatttgtgaagcaatttaattgattatggtatgtgtgctgagcttaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="115944" stop="117178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116247" g_stop="116368" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="138" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116499" g_stop="116891" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="531" r_length="393" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E295459" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116247" e_stop="116368"/>
          <exon e_start="116499" e_stop="116891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAGATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAGATGGGGCAATAT</genome_strand>
        <mrna_strand>AGGGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG..................................................................................................................................ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAANAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541222" ref_strand="+" ref_description="SGN-E541222 [TUS-61-O12](-)">
      <seq>tacagggccataccgcccctattgatagaatctagcttcacagtttttgcagatgcagcagcgtgggcttatacgttttagctgctggagcgtacatggattttgattagattattcttgcaatggctatttctcattgtgaagaaccagtactgattctggccgtgcaagatattgagccttgtaaatatttgctactggatgagctttcgtaagtcataagatcatatcctaccctactgtggcaaaggcgtgctatacactcgtctcatctagaggctgatgtgctaatagtattatcttatcccctagaactgtaactgtgccttttttgtttttgtacctgtacaagaaaaaagttccttgtttgttgttgtatcttttatccttcgctctgtgttgtatatgatttcatggtgcattatttgtttacaagaacatgtggatttgtgaagcaatttaattgattatggtatgtgtgctgagcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165B12-NSXRE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0165B12.1" temp_strand="+" temp_description="C12HBa0165B12.1  AC212767.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0165B12 upload_account_name:italy">
        <position start="115959" stop="117180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116259" g_stop="116368" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.647" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116499" g_stop="116879" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="491" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="526"/>
      <MATCH_line gen_id="C12HBa0165B12.1" gen_strand="+" ref_id="SGN-E541222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165B12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116259" e_stop="116368"/>
          <exon e_start="116499" e_stop="116879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGAAAGTCACCTCTGTTCTTTACATGCAACCAGATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAG</genome_strand>
        <mrna_strand>TACAGGGCCATACCGCCCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG..................................................................................................................................ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2817" PGL_stop="3062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2817" e_stop="3062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2817" e_stop="3062" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2817" stop="3062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACATTCGCAGTTTTCATACTGGTGGTTGCTAAATTTCCCAACATGCACAAGGTTCGAATATTTGGGATCAATGCAGATCAATGAAGTACTTCATTCAATTTGAAATTTTAGTTCCAACTTTACTCTCAGCTATATAGTAAGTATTTGATTGGTTTTAACAATTTTGAGTAAACAGGGAACTCCTGTACAAATGCAACAACTTCAAAGGGTGAAATTATATATATAGTAAAAAGATTAAGAGCCG</gDNA_template>
            <first_frame> T  H  S  Q  F  S  Y  W  W  L  L  N  F  P  T  C  T  R  F  E  Y  L  G  S  M  Q  I  N  E  V  L  H  S  I  *  N  F  S  S  N  F  T  L  S  Y  I  V  S  I  *  L  V  L  T  I  L  S  K  Q  G  T  P  V  Q  M  Q  Q  L  Q  R  V  K  L  Y  I  *  *  K  D  *  E  P </first_frame>
            <second_frame>  H  I  R  S  F  H  T  G  G  C  *  I  S  Q  H  A  Q  G  S  N  I  W  D  Q  C  R  S  M  K  Y  F  I  Q  F  E  I  L  V  P  T  L  L  S  A  I  *  *  V  F  D  W  F  *  Q  F  *  V  N  R  E  L  L  Y  K  C  N  N  F  K  G  *  N  Y  I  Y  S  K  K  I  K  S   </second_frame>
            <third_frame>   T  F  A  V  F  I  L  V  V  A  K  F  P  N  M  H  K  V  R  I  F  G  I  N  A  D  Q  *  S  T  S  F  N  L  K  F  *  F  Q  L  Y  S  Q  L  Y  S  K  Y  L  I  G  F  N  N  F  E  *  T  G  N  S  C  T  N  A  T  T  S  K  G  E  I  I  Y  I  V  K  R  L  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0165B12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="57008" PGL_stop="48965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57008" e_stop="56514"/>
            <exon e_start="56233" e_stop="56184"/>
            <exon e_start="55937" e_stop="55802"/>
            <exon e_start="55703" e_stop="55602"/>
            <exon e_start="55321" e_stop="55094"/>
            <exon e_start="54672" e_stop="54594"/>
            <exon e_start="54022" e_stop="53940"/>
            <exon e_start="53412" e_stop="53321"/>
            <exon e_start="53192" e_stop="52680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57008" e_stop="56514" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56233" e_stop="56184" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55937" e_stop="55802" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.900">
            <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55703" e_stop="55602" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.809">
            <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="55321" e_stop="55094" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55093" i_stop="54673" i_length="421"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54672" e_stop="54594" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54593" i_stop="54023" i_length="571"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54022" e_stop="53940" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53412" e_stop="53321" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128"/>
          </intron>
          <exon e_serial="9" e_score="0.912">
            <gDNA_exon_boundary e_start="53192" e_stop="52680" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57008" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56943" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56942" stop="56514"/>
              <exon start="56233" stop="56212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56939" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56938" stop="56645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56865" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56655" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56655" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56643" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55094"/>
              <exon start="54672" stop="54601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56614" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55137" stop="55094"/>
              <exon start="54672" stop="54594"/>
              <exon start="54022" stop="53940"/>
              <exon start="53412" stop="53321"/>
              <exon start="53192" stop="52738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54665" stop="54594"/>
              <exon start="54022" stop="53940"/>
              <exon start="53412" stop="53321"/>
              <exon start="53192" stop="52815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53994" stop="53940"/>
              <exon start="53412" stop="53321"/>
              <exon start="53192" stop="52680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572397" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53191" stop="52720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53109" stop="52720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53109" stop="52751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467695" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCACTGTAGTATAAACAGCCGCCGATGCAAAACTTTTTTTTCTTGACAGACTGCCGACGTGATGAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT : ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA : GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT : CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG : CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAACAAGTTGCTGTTGGCAGGAGACCAGCACTGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCG : GTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTCGATCCTTCGACCG : GTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAG : AAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAG : GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTACATTATTTATGCTTTGATTGATTAATTTTGGTTCACTGTAATCCTGTTAAGAAGAAGCAATGTGGTGGCTTATTA</gDNA_template>
            <first_frame> S  H  C  S  I  N  S  R  R  C  K  T  F  F  S  *  Q  T  A  D  V  M  K  L  P  S  H  M  A  I  F  F  F  L  K  T  I  R  *  F  G  F  F  T  P  N  D  R  E  E  L  T  I  F  F  F  F  L  S  H  T  N  H  H  Y  I  K  *  T  L  D  S  V  T  S  P  K  I  S  D  F  H  S  L  T  S  N  R  T  F  F  F  F  N  F  W  V  F  L  L  *  F  G  S  M  S  K  N  I  L  V  T  G  G  A  G  Y  I  G  S  H  T  V  L  Q  L  L  L  G  G  Y  K  T  V  V  V  D  N  L  D  N  S  S  A  I  A  I  K  R  V  Q  E  L  A  G  R  F  G  S  N  L  L  F  Y  N  :  I  D  L  R  D  K  P  A  V  E  K  L  F  E  S  N  K :   F  D  A  V  I  H  F  A  G  L  K  A  V  G  E  S  V  Q  K  P  L  M  Y  Y  N  N  N  I  T  G  T  I  T  L  L  E  V  M  A  T  R  G  C  K  N  :  L  V  F  S  S  S  S  T  V  Y  G  W  P  K  E  V  P  C  T  E  E  S  P  I  S  A  A  N  P  Y  G  R  T  K  :  L  F  A  E  D  I  C  R  D  V  Y  H  S  D  S  Q  W  K  V  I  L  L  R  Y  F  N  P  I  G  A  H  P  S  G  C  I  G  D  D  P  R  G  I  P  N  N  L  M  P  F  V  Q  Q  V  A  V  G  R  R  P  A  L  T  V  Y  G  T  D  Y  P  T  K  D  G  T  A  :  V  R  D  Y  I  H  V  V  D  L  A  D  G  H  I  A  A  L  R  K  L  F  D  P  S  T   : G  C  E  V  Y  N  L  G  T  G  K  G  S  S  V  L  E  V  V  A  A  F  E  K  A  S  G  K  :  K  I  P  L  V  M  S  G  R  R  P  G  D  A  E  I  V  Y  A  A  T  E  K  A  E  R  E  L  N  W  R :   A  K  Y  G  I  E  D  M  C  R  D  Q  W  N  W  A  S  K  N  P  Y  G  Y  E  G  S  K  E  S  K  *  *  S  S  V  C  S  F  *  L  H  V  F  *  W  S  H  H  S  T  C  W  F  D  S  S  S  L  L  I  T  N  V  *  T  I  S  L  F  F  Q  S  K  D  S  A  Y  I  T  R  I  I  E  C  S  E  Y  L  Y  F  S  N  L  K  F  *  S  E  W  N  V  F  H  R  E  E  K  G  I  V  D  E  *  *  L  I  *  L  K  S  I  A  T  F  Y  S  F  F  Y  S  F  V  T  S  S  T  T  I  I  L  F  K  D  S  N  Y  I  I  Y  A  L  I  D  *  F  W  F  T  V  I  L  L  R  R  S  N  V  V  A  Y   </first_frame>
            <second_frame>  V  T  V  V  *  T  A  A  D  A  K  L  F  F  L  D  R  L  P  T  *  *  N  F  L  P  T  W  P  F  F  S  S  L  K  L  F  V  D  L  V  S  L  H  P  M  T  E  K  S  *  Q  S  F  F  F  F  S  L  T  Q  I  I  I  I  *  S  R  L  W  T  L  L  Q  V  R  K  Y  Q  I  F  I  L  *  P  Q  I  E  P  F  F  S  L  I  F  G  F  F  C  C  D  L  D  Q  C  R  R  I  Y  W  *  R  V  E  L  G  I  L  G  V  T  R  C  Y  S  C  C  W  V  V  I  R  Q  W  W  L  I  I  W  I  I  H  L  Q  L  Q  S  K  G  F  R  N  L  R  V  D  L  G  L  T  Y  C  F  T  I :   L  I  C  V  I  S  L  Q  L  K  S  F  S  S  L  T   : S  L  M  L  L  Y  I  L  L  D  *  K  Q  W  V  K  V  S  R  N  L  *  C  T  I  T  T  I  L  Q  V  Q  *  P  C  W  K  S  W  Q  R  V  D  A  K  I :   L  C  S  L  H  R  L  L  S  M  V  G  Q  K  R  F  L  V  L  R  S  L  P  *  V  L  Q  I  L  M  E  E  Q  S :   S  L  L  K  I  F  A  E  M  S  T  I  L  T  L  N  G  K  S  Y  C  C  G  T  S  I  L  L  V  H  I  Q  V  A  V  L  V  M  I  H  V  E  F  Q  T  T  S  C  P  L  F  N  K  L  L  L  A  G  D  Q  H  *  Q  F  M  E  L  I  I  Q  Q  R  M  A  L  R :   Y  V  I  T  F  M  L  L  I  *  R  M  A  I  L  L  P  C  G  S  C  S  I  L  R  P  :  V  V  K  F  T  T  W  E  L  G  K  D  H  Q  S  W  K  W  W  Q  H  L  R  R  H  Q  E  R :   K  F  H  W  *  C  L  V  E  D  L  G  T  L  K  L  Y  T  Q  Q  Q  R  K  Q  N  E  N  *  I  G   : G  L  N  M  A  L  K  I  C  A  G  I  S  G  T  G  P  V  K  T  P  T  A  M  K  D  R  R  N  Q  S  D  R  V  Q  Y  A  P  F  N  C  M  F  F  N  G  P  I  I  P  P  V  G  S  I  H  L  L  C  *  S  P  T  C  R  P  S  V  F  S  F  R  V  R  I  P  R  I  L  L  G  S  *  N  A  R  N  I  Y  I  F  L  T  *  S  S  E  A  S  G  M  F  S  I  A  K  K  K  G  *  L  M  N  N  S  S  F  S  *  N  L  *  R  H  F  I  R  S  F  I  L  L  *  L  A  A  L  Q  S  Y  C  L  K  I  L  I  T  L  F  M  L  *  L  I  N  F  G  S  L  *  S  C  *  E  E  A  M  W  W  L  I  </second_frame>
            <third_frame>   S  L  *  Y  K  Q  P  P  M  Q  N  F  F  F  L  T  D  C  R  R  D  E  T  S  F  P  H  G  H  F  F  L  P  *  N  Y  S  L  I  W  F  L  Y  T  Q  *  Q  R  R  A  D  N  L  F  F  F  S  L  S  H  K  S  S  L  Y  K  V  D  F  G  L  C  Y  K  S  E  N  I  R  F  S  F  S  N  L  K  S  N  L  F  F  L  *  F  L  G  F  F  V  V  I  W  I  N  V  E  E  Y  I  G  D  G  W  S  W  V  Y  W  E  S  H  G  V  T  V  A  V  G  W  L  *  D  S  G  G  *  *  F  G  *  F  I  C  N  C  N  Q  K  G  S  G  T  C  G  S  I  W  V  *  P  I  V  L  Q   : Y  *  S  A  *  *  A  C  S  *  K  A  F  R  V  *  Q  :  V  *  C  C  Y  T  F  C  W  T  K  S  S  G  *  K  C  P  E  T  F  D  V  L  *  Q  Q  Y  Y  R  Y  N  N  P  A  G  S  H  G  N  A  W  M  Q  K   : S  C  V  L  F  I  V  Y  C  L  W  L  A  K  R  G  S  L  Y  *  G  V  S  H  K  C  C  K  S  L  W  K  N  K   : A  L  C  *  R  Y  L  P  R  C  L  P  F  *  L  S  M  E  S  H  I  V  A  V  L  Q  S  Y  W  C  T  S  K  W  L  Y  W  *  *  S  T  W  N  S  K  Q  P  H  A  L  C  S  T  S  C  C  W  Q  E  T  S  T  D  S  L  W  N  *  L  S  N  K  G  W  H  C   : G  T  *  L  H  S  C  C  *  F  S  G  W  P  Y  C  C  L  A  E  A  V  R  S  F  D  R :   L  *  S  L  Q  P  G  N  W  E  R  I  I  S  L  G  S  G  G  S  I  *  E  G  I  R  K   : E  N  S  T  G  D  V  W  S  K  T  W  G  R  *  N  C  I  R  S  N  R  E  S  R  T  R  I  E  L  E  :  G  *  I  W  H  *  R  Y  V  P  G  S  V  E  L  G  Q  *  K  P  L  R  L  *  R  I  E  G  I  K  V  I  E  F  S  M  L  L  L  T  A  C  F  L  M  V  P  S  F  H  L  L  V  R  F  I  F  S  A  N  H  Q  R  V  D  H  Q  S  F  L  S  E  *  G  F  R  V  Y  Y  *  D  H  R  M  L  G  I  F  I  F  F  *  L  E  V  L  K  R  V  E  C  F  P  S  R  R  K  R  D  S  *  *  I  I  A  H  L  A  E  I  Y  S  D  I  L  F  V  L  L  F  F  C  N  *  Q  H  Y  N  H  I  V  *  R  F  *  L  H  Y  L  C  F  D  *  L  I  L  V  H  C  N  P  V  K  K  K  Q  C  G  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56705" stop="56514"/>
                    <exon start="56233" stop="56184"/>
                    <exon start="55937" stop="55802"/>
                    <exon start="55703" stop="55602"/>
                    <exon start="55321" stop="55094"/>
                    <exon start="54672" stop="54594"/>
                    <exon start="54022" stop="53940"/>
                    <exon start="53412" stop="53321"/>
                    <exon start="53192" stop="53099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSMSKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNSSAIAIKRVQELAGRFGSNLLFYNIDLRDKPAVEKLFESNKFDAVIHFAGLKAVGESVQKPLMYYNNNITGTITLLEVMATRGCKNLVFSSSSTVYGWPKEVPCTEESPISAANPYGRTKLFAEDICRDVYHSDSQWKVILLRYFNPIGAHPSGCIGDDPRGIPNNLMPFVQQVAVGRRPALTVYGTDYPTKDGTAVRDYIHVVDLADGHIAALRKLFDPSTGCEVYNLGTGKGSSVLEVVAAFEKASGKKIPLVMSGRRPGDAEIVYAATEKAERELNWRAKYGIEDMCRDQWNWASKNPYGYEGSKESK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57008" e_stop="56514"/>
            <exon e_start="56233" e_stop="56184"/>
            <exon e_start="55937" e_stop="55802"/>
            <exon e_start="55703" e_stop="55602"/>
            <exon e_start="55321" e_stop="55094"/>
            <exon e_start="54672" e_stop="54594"/>
            <exon e_start="54022" e_stop="53940"/>
            <exon e_start="53412" e_stop="53321"/>
            <exon e_start="53192" e_stop="52754"/>
            <exon e_start="49020" e_stop="48965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.679"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57008" e_stop="56514" e_length="495"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56513" i_stop="56234" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56233" e_stop="56184" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56183" i_stop="55938" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55937" e_stop="55802" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.900">
            <gDNA_intron_boundary i_start="55801" i_stop="55704" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55703" e_stop="55602" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.809">
            <gDNA_intron_boundary i_start="55601" i_stop="55322" i_length="280"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="55321" e_stop="55094" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55093" i_stop="54673" i_length="421"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54672" e_stop="54594" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54593" i_stop="54023" i_length="571"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54022" e_stop="53940" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53939" i_stop="53413" i_length="527"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53412" e_stop="53321" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53320" i_stop="53193" i_length="128"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="53192" e_stop="52754" e_length="439"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52753" i_stop="49021" i_length="3733"/>
          </intron>
          <exon e_serial="10" e_score="0.679">
            <gDNA_exon_boundary e_start="49020" e_stop="48965" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57008" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56943" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56942" stop="56514"/>
              <exon start="56233" stop="56212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56939" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56938" stop="56645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56865" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56655" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56655" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56643" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55094"/>
              <exon start="54672" stop="54601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56614" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56514"/>
              <exon start="56233" stop="56184"/>
              <exon start="55937" stop="55802"/>
              <exon start="55703" stop="55602"/>
              <exon start="55321" stop="55262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54665" stop="54594"/>
              <exon start="54022" stop="53940"/>
              <exon start="53412" stop="53321"/>
              <exon start="53192" stop="52815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53995" stop="53940"/>
              <exon start="53412" stop="53321"/>
              <exon start="53192" stop="52754"/>
              <exon start="49020" stop="48965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCACTGTAGTATAAACAGCCGCCGATGCAAAACTTTTTTTTCTTGACAGACTGCCGACGTGATGAAACTTCCTTCCCACATGGCCATTTTTTTCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCATCATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTTTTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGCTGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGGTCTAACCTATTGTTTTACAAT : ATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAA : GTTTGATGCTGTTATACATTTTGCTGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGAAGTCATGGCAACGCGTGGATGCAAAAAT : CTTGTGTTCTCTTCATCGTCTACTGTCTATGGTTGGCCAAAAGAGGTTCCTTGTACTGAGGAGTCTCCCATAAGTGCTGCAAATCCTTATGGAAGAACAAAG : CTCTTTGCTGAAGATATTTGCCGAGATGTCTACCATTCTGACTCTCAATGGAAAGTCATATTGTTGCGGTACTTCAATCCTATTGGTGCACATCCAAGTGGCTGTATTGGTGATGATCCACGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAACAAGTTGCTGTTGGCAGGAGACCAGCACTGACAGTTTATGGAACTGATTATCCAACAAAGGATGGCACTGCG : GTACGTGATTACATTCATGTTGTTGATTTAGCGGATGGCCATATTGCTGCCTTGCGGAAGCTGTTCGATCCTTCGACCG : GTTGTGAAGTTTACAACCTGGGAACTGGGAAAGGATCATCAGTCTTGGAAGTGGTGGCAGCATTTGAGAAGGCATCAGGAAAG : AAAATTCCACTGGTGATGTCTGGTCGAAGACCTGGGGACGCTGAAATTGTATACGCAGCAACAGAGAAAGCAGAACGAGAATTGAATTGGAG : GGCTAAATATGGCATTGAAGATATGTGCCGGGATCAGTGGAACTGGGCCAGTAAAAACCCCTACGGCTATGAAGGATCGAAGGAATCAAAGTGATAGAGTTCAGTATGCTCCTTTTAACTGCATGTTTTTTAATGGTCCCATCATTCCACCTGTTGGTTCGATTCATCTTCTCTGCTAATCACCAACGTGTAGACCATCAGTCTTTTCTTTCAGAGTAAGGATTCCGCGTATATTACTAGGATCATAGAATGCTCGGAATATTTATATTTTTCTAACTTGAAGTTCTGAAGCGAGTGGAATGTTTTCCATCGCGAAGAAAAAGGGATAGTTGATGAATAATAGCTCATTTAGCTGAAATCTATAGCGACATTTTATTCGTTCTTTTATTCTTTTGTAACTAGCAGCACTACAATCATATTGTTTAAAGATTCTAATTAC : CTTAAAAAGTATATACCAAAAATACACCAGAGAAAAAAGAAAAAAAAAACCCTAAT</gDNA_template>
            <first_frame> S  H  C  S  I  N  S  R  R  C  K  T  F  F  S  *  Q  T  A  D  V  M  K  L  P  S  H  M  A  I  F  F  F  L  K  T  I  R  *  F  G  F  F  T  P  N  D  R  E  E  L  T  I  F  F  F  F  L  S  H  T  N  H  H  Y  I  K  *  T  L  D  S  V  T  S  P  K  I  S  D  F  H  S  L  T  S  N  R  T  F  F  F  F  N  F  W  V  F  L  L  *  F  G  S  M  S  K  N  I  L  V  T  G  G  A  G  Y  I  G  S  H  T  V  L  Q  L  L  L  G  G  Y  K  T  V  V  V  D  N  L  D  N  S  S  A  I  A  I  K  R  V  Q  E  L  A  G  R  F  G  S  N  L  L  F  Y  N  :  I  D  L  R  D  K  P  A  V  E  K  L  F  E  S  N  K :   F  D  A  V  I  H  F  A  G  L  K  A  V  G  E  S  V  Q  K  P  L  M  Y  Y  N  N  N  I  T  G  T  I  T  L  L  E  V  M  A  T  R  G  C  K  N  :  L  V  F  S  S  S  S  T  V  Y  G  W  P  K  E  V  P  C  T  E  E  S  P  I  S  A  A  N  P  Y  G  R  T  K  :  L  F  A  E  D  I  C  R  D  V  Y  H  S  D  S  Q  W  K  V  I  L  L  R  Y  F  N  P  I  G  A  H  P  S  G  C  I  G  D  D  P  R  G  I  P  N  N  L  M  P  F  V  Q  Q  V  A  V  G  R  R  P  A  L  T  V  Y  G  T  D  Y  P  T  K  D  G  T  A  :  V  R  D  Y  I  H  V  V  D  L  A  D  G  H  I  A  A  L  R  K  L  F  D  P  S  T   : G  C  E  V  Y  N  L  G  T  G  K  G  S  S  V  L  E  V  V  A  A  F  E  K  A  S  G  K  :  K  I  P  L  V  M  S  G  R  R  P  G  D  A  E  I  V  Y  A  A  T  E  K  A  E  R  E  L  N  W  R :   A  K  Y  G  I  E  D  M  C  R  D  Q  W  N  W  A  S  K  N  P  Y  G  Y  E  G  S  K  E  S  K  *  *  S  S  V  C  S  F  *  L  H  V  F  *  W  S  H  H  S  T  C  W  F  D  S  S  S  L  L  I  T  N  V  *  T  I  S  L  F  F  Q  S  K  D  S  A  Y  I  T  R  I  I  E  C  S  E  Y  L  Y  F  S  N  L  K  F  *  S  E  W  N  V  F  H  R  E  E  K  G  I  V  D  E  *  *  L  I  *  L  K  S  I  A  T  F  Y  S  F  F  Y  S  F  V  T  S  S  T  T  I  I  L  F  K  D  S  N  Y  :  L  K  K  Y  I  P  K  I  H  Q  R  K  K  K  K  K  T  L   </first_frame>
            <second_frame>  V  T  V  V  *  T  A  A  D  A  K  L  F  F  L  D  R  L  P  T  *  *  N  F  L  P  T  W  P  F  F  S  S  L  K  L  F  V  D  L  V  S  L  H  P  M  T  E  K  S  *  Q  S  F  F  F  F  S  L  T  Q  I  I  I  I  *  S  R  L  W  T  L  L  Q  V  R  K  Y  Q  I  F  I  L  *  P  Q  I  E  P  F  F  S  L  I  F  G  F  F  C  C  D  L  D  Q  C  R  R  I  Y  W  *  R  V  E  L  G  I  L  G  V  T  R  C  Y  S  C  C  W  V  V  I  R  Q  W  W  L  I  I  W  I  I  H  L  Q  L  Q  S  K  G  F  R  N  L  R  V  D  L  G  L  T  Y  C  F  T  I :   L  I  C  V  I  S  L  Q  L  K  S  F  S  S  L  T   : S  L  M  L  L  Y  I  L  L  D  *  K  Q  W  V  K  V  S  R  N  L  *  C  T  I  T  T  I  L  Q  V  Q  *  P  C  W  K  S  W  Q  R  V  D  A  K  I :   L  C  S  L  H  R  L  L  S  M  V  G  Q  K  R  F  L  V  L  R  S  L  P  *  V  L  Q  I  L  M  E  E  Q  S :   S  L  L  K  I  F  A  E  M  S  T  I  L  T  L  N  G  K  S  Y  C  C  G  T  S  I  L  L  V  H  I  Q  V  A  V  L  V  M  I  H  V  E  F  Q  T  T  S  C  P  L  F  N  K  L  L  L  A  G  D  Q  H  *  Q  F  M  E  L  I  I  Q  Q  R  M  A  L  R :   Y  V  I  T  F  M  L  L  I  *  R  M  A  I  L  L  P  C  G  S  C  S  I  L  R  P  :  V  V  K  F  T  T  W  E  L  G  K  D  H  Q  S  W  K  W  W  Q  H  L  R  R  H  Q  E  R :   K  F  H  W  *  C  L  V  E  D  L  G  T  L  K  L  Y  T  Q  Q  Q  R  K  Q  N  E  N  *  I  G   : G  L  N  M  A  L  K  I  C  A  G  I  S  G  T  G  P  V  K  T  P  T  A  M  K  D  R  R  N  Q  S  D  R  V  Q  Y  A  P  F  N  C  M  F  F  N  G  P  I  I  P  P  V  G  S  I  H  L  L  C  *  S  P  T  C  R  P  S  V  F  S  F  R  V  R  I  P  R  I  L  L  G  S  *  N  A  R  N  I  Y  I  F  L  T  *  S  S  E  A  S  G  M  F  S  I  A  K  K  K  G  *  L  M  N  N  S  S  F  S  *  N  L  *  R  H  F  I  R  S  F  I  L  L  *  L  A  A  L  Q  S  Y  C  L  K  I  L  I  T :   L  K  S  I  Y  Q  K  Y  T  R  E  K  R  K  K  K  P  *  </second_frame>
            <third_frame>   S  L  *  Y  K  Q  P  P  M  Q  N  F  F  F  L  T  D  C  R  R  D  E  T  S  F  P  H  G  H  F  F  L  P  *  N  Y  S  L  I  W  F  L  Y  T  Q  *  Q  R  R  A  D  N  L  F  F  F  S  L  S  H  K  S  S  L  Y  K  V  D  F  G  L  C  Y  K  S  E  N  I  R  F  S  F  S  N  L  K  S  N  L  F  F  L  *  F  L  G  F  F  V  V  I  W  I  N  V  E  E  Y  I  G  D  G  W  S  W  V  Y  W  E  S  H  G  V  T  V  A  V  G  W  L  *  D  S  G  G  *  *  F  G  *  F  I  C  N  C  N  Q  K  G  S  G  T  C  G  S  I  W  V  *  P  I  V  L  Q   : Y  *  S  A  *  *  A  C  S  *  K  A  F  R  V  *  Q  :  V  *  C  C  Y  T  F  C  W  T  K  S  S  G  *  K  C  P  E  T  F  D  V  L  *  Q  Q  Y  Y  R  Y  N  N  P  A  G  S  H  G  N  A  W  M  Q  K   : S  C  V  L  F  I  V  Y  C  L  W  L  A  K  R  G  S  L  Y  *  G  V  S  H  K  C  C  K  S  L  W  K  N  K   : A  L  C  *  R  Y  L  P  R  C  L  P  F  *  L  S  M  E  S  H  I  V  A  V  L  Q  S  Y  W  C  T  S  K  W  L  Y  W  *  *  S  T  W  N  S  K  Q  P  H  A  L  C  S  T  S  C  C  W  Q  E  T  S  T  D  S  L  W  N  *  L  S  N  K  G  W  H  C   : G  T  *  L  H  S  C  C  *  F  S  G  W  P  Y  C  C  L  A  E  A  V  R  S  F  D  R :   L  *  S  L  Q  P  G  N  W  E  R  I  I  S  L  G  S  G  G  S  I  *  E  G  I  R  K   : E  N  S  T  G  D  V  W  S  K  T  W  G  R  *  N  C  I  R  S  N  R  E  S  R  T  R  I  E  L  E  :  G  *  I  W  H  *  R  Y  V  P  G  S  V  E  L  G  Q  *  K  P  L  R  L  *  R  I  E  G  I  K  V  I  E  F  S  M  L  L  L  T  A  C  F  L  M  V  P  S  F  H  L  L  V  R  F  I  F  S  A  N  H  Q  R  V  D  H  Q  S  F  L  S  E  *  G  F  R  V  Y  Y  *  D  H  R  M  L  G  I  F  I  F  F  *  L  E  V  L  K  R  V  E  C  F  P  S  R  R  K  R  D  S  *  *  I  I  A  H  L  A  E  I  Y  S  D  I  L  F  V  L  L  F  F  C  N  *  Q  H  Y  N  H  I  V  *  R  F  *  L   : P  *  K  V  Y  T  K  N  T  P  E  K  K  E  K  K  N  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56705" stop="56514"/>
                    <exon start="56233" stop="56184"/>
                    <exon start="55937" stop="55802"/>
                    <exon start="55703" stop="55602"/>
                    <exon start="55321" stop="55094"/>
                    <exon start="54672" stop="54594"/>
                    <exon start="54022" stop="53940"/>
                    <exon start="53412" stop="53321"/>
                    <exon start="53192" stop="53099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSMSKNILVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNSSAIAIKRVQELAGRFGSNLLFYNIDLRDKPAVEKLFESNKFDAVIHFAGLKAVGESVQKPLMYYNNNITGTITLLEVMATRGCKNLVFSSSSTVYGWPKEVPCTEESPISAANPYGRTKLFAEDICRDVYHSDSQWKVILLRYFNPIGAHPSGCIGDDPRGIPNNLMPFVQQVAVGRRPALTVYGTDYPTKDGTAVRDYIHVVDLADGHIAALRKLFDPSTGCEVYNLGTGKGSSVLEVVAAFEKASGKKIPLVMSGRRPGDAEIVYAATEKAERELNWRAKYGIEDMCRDQWNWASKNPYGYEGSKESK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="70199" PGL_stop="66805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70199" e_stop="69896"/>
            <exon e_start="68796" e_stop="68627"/>
            <exon e_start="67665" e_stop="67588"/>
            <exon e_start="67015" e_stop="66949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.532" acc_prob="0.800" e_score="0.852"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.976"/>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="0.987"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.852">
            <gDNA_exon_boundary e_start="70199" e_stop="69896" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.532" acc_prob="0.800">
            <gDNA_intron_boundary i_start="69895" i_stop="68797" i_length="1099"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="68796" e_stop="68627" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="68626" i_stop="67666" i_length="961"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="67665" e_stop="67588" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="67587" i_stop="67016" i_length="572"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="67015" e_stop="66949" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70199" stop="69896"/>
              <exon start="68796" stop="68627"/>
              <exon start="67665" stop="67588"/>
              <exon start="67015" stop="66949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCAAAAACCTCACTTTTTCTTACTATTGTTCGTCTAAAACGTCTAGTAATTTCAAGGTGAAAGCTTCGTTGAGTGAAGCGGAAGGTGAGAAAAAGTTGTTAGATGATGGATTGATTAGTTTGGTTTCGTCTGTGAAAGATGCGGGTGAGGTGTTGGATGTGATAGCTCAAAACACCGGGAGGAGTGGTGGAGTTGTGAGCGGTTCTGATTGTTGTTTGATTATCGCTGCCGCACTTGAACGGAGCAATGCTGAATTGGCGATATCTGTATTTGATGCTATGCGTTCCACTTTTCATCCTG : GGACGACTGTTTTAGACAGAGGCCCATCCTATGATAGATGGAGGTGGTCAAGGCCAGATGTTAACACATATACCTTGTTAGTTCGAGGACTTGCAACACTGCTGAGGGTTTCGGATGCCCTTAAAATCATTGCCAATGTTTGTCGAGTGAGCATTTCTCCTAATGAAGAG : GTTCTCTTTGGCAAAGTTGTCCGATGTCCAAGTTGTGAGATTGCTGTTACTGTTGCTCAGCCACAAGATGGTATCCAG : GTTGTATCCTGTTCAAAATGCCGTTACCAGTATGAGCTCCTTTCAGGCAATATTGTTAGTATAGAGT</gDNA_template>
            <first_frame> F  S  K  N  L  T  F  S  Y  Y  C  S  S  K  T  S  S  N  F  K  V  K  A  S  L  S  E  A  E  G  E  K  K  L  L  D  D  G  L  I  S  L  V  S  S  V  K  D  A  G  E  V  L  D  V  I  A  Q  N  T  G  R  S  G  G  V  V  S  G  S  D  C  C  L  I  I  A  A  A  L  E  R  S  N  A  E  L  A  I  S  V  F  D  A  M  R  S  T  F  H  P   : G  T  T  V  L  D  R  G  P  S  Y  D  R  W  R  W  S  R  P  D  V  N  T  Y  T  L  L  V  R  G  L  A  T  L  L  R  V  S  D  A  L  K  I  I  A  N  V  C  R  V  S  I  S  P  N  E  E  :  V  L  F  G  K  V  V  R  C  P  S  C  E  I  A  V  T  V  A  Q  P  Q  D  G  I  Q  :  V  V  S  C  S  K  C  R  Y  Q  Y  E  L  L  S  G  N  I  V  S  I  E  </first_frame>
            <second_frame>  S  P  K  T  S  L  F  L  T  I  V  R  L  K  R  L  V  I  S  R  *  K  L  R  *  V  K  R  K  V  R  K  S  C  *  M  M  D  *  L  V  W  F  R  L  *  K  M  R  V  R  C  W  M  *  *  L  K  T  P  G  G  V  V  E  L  *  A  V  L  I  V  V  *  L  S  L  P  H  L  N  G  A  M  L  N  W  R  Y  L  Y  L  M  L  C  V  P  L  F  I  L  :  G  R  L  F  *  T  E  A  H  P  M  I  D  G  G  G  Q  G  Q  M  L  T  H  I  P  C  *  F  E  D  L  Q  H  C  *  G  F  R  M  P  L  K  S  L  P  M  F  V  E  *  A  F  L  L  M  K  R :   F  S  L  A  K  L  S  D  V  Q  V  V  R  L  L  L  L  L  L  S  H  K  M  V  S  R :   L  Y  P  V  Q  N  A  V  T  S  M  S  S  F  Q  A  I  L  L  V  *  S </second_frame>
            <third_frame>   L  Q  K  P  H  F  F  L  L  L  F  V  *  N  V  *  *  F  Q  G  E  S  F  V  E  *  S  G  R  *  E  K  V  V  R  *  W  I  D  *  F  G  F  V  C  E  R  C  G  *  G  V  G  C  D  S  S  K  H  R  E  E  W  W  S  C  E  R  F  *  L  L  F  D  Y  R  C  R  T  *  T  E  Q  C  *  I  G  D  I  C  I  *  C  Y  A  F  H  F  S  S  W :   D  D  C  F  R  Q  R  P  I  L  *  *  M  E  V  V  K  A  R  C  *  H  I  Y  L  V  S  S  R  T  C  N  T  A  E  G  F  G  C  P  *  N  H  C  Q  C  L  S  S  E  H  F  S  *  *  R   : G  S  L  W  Q  S  C  P  M  S  K  L  *  D  C  C  Y  C  C  S  A  T  R  W  Y  P   : G  C  I  L  F  K  M  P  L  P  V  *  A  P  F  R  Q  Y  C  *  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70199" stop="69896"/>
                    <exon start="68796" stop="68627"/>
                    <exon start="67665" stop="67588"/>
                    <exon start="67015" stop="66950"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKNLTFSYYCSSKTSSNFKVKASLSEAEGEKKLLDDGLISLVSSVKDAGEVLDVIAQNTGRSGGVVSGSDCCLIIAAALERSNAELAISVFDAMRSTFHPGTTVLDRGPSYDRWRWSRPDVNTYTLLVRGLATLLRVSDALKIIANVCRVSISPNEEVLFGKVVRCPSCEIAVTVAQPQDGIQVVSCSKCRYQYELLSGNIVSIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67241" e_stop="66805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="67241" e_stop="66805" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67241" stop="66805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAAGTAGTGATGATAAGTTTTTCAGATTCTCCTCTCACATACAACTTTTACTACACATAGCTGATCATGTTACCGTGTGGGTTATGTATAAACAAAAATATTCCATCAGTCTTATGGAATACTAAACGACCTCAACTTTATGATAGGGTCTCCACTTTTAACTTCAATGTGCTTCTTGTATTTTATTTCTGCTACATGACATAAGAAAACCCACTTCTGCAGGTTGTATCCTGTTCAAAATGCCGTTACCAGTATGAGCTCCTTTCAGGCAATATTGTTAGTATAGAGTCGGAAGATTTTAGGTTGGTTTTCTTTAACTACTGTGTGATCCAGTAGTCGTTTGATTGAAGTGGTTTTACTTTGTTAAATCCTCGATTCTGTACCAATTATTTCAATCATTTCACCAAAAAAGAAACAAAAACTAAAAGAAAAA</gDNA_template>
            <first_frame> N  L  S  S  D  D  K  F  F  R  F  S  S  H  I  Q  L  L  L  H  I  A  D  H  V  T  V  W  V  M  Y  K  Q  K  Y  S  I  S  L  M  E  Y  *  T  T  S  T  L  *  *  G  L  H  F  *  L  Q  C  A  S  C  I  L  F  L  L  H  D  I  R  K  P  T  S  A  G  C  I  L  F  K  M  P  L  P  V  *  A  P  F  R  Q  Y  C  *  Y  R  V  G  R  F  *  V  G  F  L  *  L  L  C  D  P  V  V  V  *  L  K  W  F  Y  F  V  K  S  S  I  L  Y  Q  L  F  Q  S  F  H  Q  K  R  N  K  N  *  K  K   </first_frame>
            <second_frame>  I  *  V  V  M  I  S  F  S  D  S  P  L  T  Y  N  F  Y  Y  T  *  L  I  M  L  P  C  G  L  C  I  N  K  N  I  P  S  V  L  W  N  T  K  R  P  Q  L  Y  D  R  V  S  T  F  N  F  N  V  L  L  V  F  Y  F  C  Y  M  T  *  E  N  P  L  L  Q  V  V  S  C  S  K  C  R  Y  Q  Y  E  L  L  S  G  N  I  V  S  I  E  S  E  D  F  R  L  V  F  F  N  Y  C  V  I  Q  *  S  F  D  *  S  G  F  T  L  L  N  P  R  F  C  T  N  Y  F  N  H  F  T  K  K  E  T  K  T  K  R  K  </second_frame>
            <third_frame>   F  K  *  *  *  *  V  F  Q  I  L  L  S  H  T  T  F  T  T  H  S  *  S  C  Y  R  V  G  Y  V  *  T  K  I  F  H  Q  S  Y  G  I  L  N  D  L  N  F  M  I  G  S  P  L  L  T  S  M  C  F  L  Y  F  I  S  A  T  *  H  K  K  T  H  F  C  R  L  Y  P  V  Q  N  A  V  T  S  M  S  S  F  Q  A  I  L  L  V  *  S  R  K  I  L  G  W  F  S  L  T  T  V  *  S  S  S  R  L  I  E  V  V  L  L  C  *  I  L  D  S  V  P  I  I  S  I  I  S  P  K  K  K  Q  K  L  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0165B12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="78531" PGL_stop="71664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78531" e_stop="78432"/>
            <exon e_start="76981" e_stop="76831"/>
            <exon e_start="76724" e_stop="76613"/>
            <exon e_start="76480" e_stop="76398"/>
            <exon e_start="74951" e_stop="74888"/>
            <exon e_start="74772" e_stop="74655"/>
            <exon e_start="72130" e_stop="71976"/>
            <exon e_start="71719" e_stop="71664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78531" e_stop="78432" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78431" i_stop="76982" i_length="1450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76981" e_stop="76831" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.502">
            <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76724" e_stop="76613" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.712">
            <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76480" e_stop="76398" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.923" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76397" i_stop="74952" i_length="1446"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74951" e_stop="74888" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74887" i_stop="74773" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74772" e_stop="74655" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74654" i_stop="72131" i_length="2524"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72130" e_stop="71976" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71975" i_stop="71720" i_length="256"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71719" e_stop="71664" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78531" stop="78432"/>
              <exon start="76981" stop="76831"/>
              <exon start="76724" stop="76613"/>
              <exon start="76480" stop="76398"/>
              <exon start="74951" stop="74888"/>
              <exon start="74772" stop="74764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78526" stop="78432"/>
              <exon start="76981" stop="76831"/>
              <exon start="76724" stop="76613"/>
              <exon start="76480" stop="76398"/>
              <exon start="74951" stop="74888"/>
              <exon start="74772" stop="74655"/>
              <exon start="72130" stop="72062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78522" stop="78432"/>
              <exon start="76981" stop="76831"/>
              <exon start="76724" stop="76613"/>
              <exon start="76480" stop="76398"/>
              <exon start="74951" stop="74888"/>
              <exon start="74772" stop="74655"/>
              <exon start="72130" stop="71976"/>
              <exon start="71719" stop="71664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78521" stop="78432"/>
              <exon start="76981" stop="76831"/>
              <exon start="76724" stop="76613"/>
              <exon start="76480" stop="76398"/>
              <exon start="74951" stop="74888"/>
              <exon start="74772" stop="74655"/>
              <exon start="72130" stop="71986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTATATGGCTGTCTCTATTATGTCAAGCCACTTTTCTCCTTCTCCTTCCCCTGCAAAATAACTTGGTTTGATCAAATATCAATTCCCAACAAGTTCAG : TTTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG : ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG : GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCA : ATTAGAACACATTGATGAAGTAGTAAGGGCTGCACGACTTTCGGGGTATTTGGACATGAGAATG : AGATGGGCAACTTTACCCGGAGAACCTCTTCCAGTTGATGACACTGACGTTGATGATTGGCTGCCTAGATTTTTTGTCCTTCAGGGATCGTGTATCTTCTGGTATTCGTCATGCACAG : ATCTAAGCCCCCAAGATTCAACCCTTCTATCTGATGTAGTTGAAGTTGGAACCTTACCTTGCCTGATACGAGACAATGAGGACAAACGATATTGCTTTTATATCTCAACTCGTTATGGACTGAAATATGAATGCTCTAGTATTTCTAAGATAAAG : GTTGATTCATGGTTGGAAGCATTACAGAGTGATTGCAAGCTGCGGTCTGACTGAAA</gDNA_template>
            <first_frame> S  Y  M  A  V  S  I  M  S  S  H  F  S  P  S  P  S  P  A  K  *  L  G  L  I  K  Y  Q  F  P  T  S  S   : V  L  K  L  L  A  N  I  N  I  M  G  D  G  P  R  G  I  E  V  F  E  D  H  F  Q  A  S  T  S  G  E  D  P  M  H  S  P  D  L  S  K  Y  I  G  S  N  D  S  L  R :   S  I  S  R  S  W  T  R  R  K  L  K  G  A  A  S  I  L  N  M  F  S  L  N  K  L  P  W  M  S  G  T  D  G  Q  E  K  :  V  V  L  T  A  A  E  V  E  S  L  R  S  E  L  G  A  L  E  E  R  E  A  H  C  K  A  Q :   L  E  H  I  D  E  V  V  R  A  A  R  L  S  G  Y  L  D  M  R  M  :  R  W  A  T  L  P  G  E  P  L  P  V  D  D  T  D  V  D  D  W  L  P  R  F  F  V  L  Q  G  S  C  I  F  W  Y  S  S  C  T   : D  L  S  P  Q  D  S  T  L  L  S  D  V  V  E  V  G  T  L  P  C  L  I  R  D  N  E  D  K  R  Y  C  F  Y  I  S  T  R  Y  G  L  K  Y  E  C  S  S  I  S  K  I  K  :  V  D  S  W  L  E  A  L  Q  S  D  C  K  L  R  S  D  *   </first_frame>
            <second_frame>  P  I  W  L  S  L  L  C  Q  A  T  F  L  L  L  L  P  L  Q  N  N  L  V  *  S  N  I  N  S  Q  Q  V  Q  :  F  *  S  C  W  Q  T  *  T  S  W  V  M  V  L  E  E  *  R  C  L  K  I  I  F  K  L  Q  L  L  V  K  T  P  C  I  A  Q  I  Y  L  N  I  L  E  V  M  I  L  *   : D  P  L  V  D  R  G  L  E  E  N  *  K  G  L  L  Q  F  *  I  C  L  A  S  T  S  Y  L  G  C  L  A  Q  M  V  K  K  R :   *  S  *  L  L  Q  K  *  N  L  F  D  Q  N  S  V  L  W  K  K  E  K  L  I  A  K  L   : N  *  N  T  L  M  K  *  *  G  L  H  D  F  R  G  I  W  T  *  E  * :   D  G  Q  L  Y  P  E  N  L  F  Q  L  M  T  L  T  L  M  I  G  C  L  D  F  L  S  F  R  D  R  V  S  S  G  I  R  H  A  Q  :  I  *  A  P  K  I  Q  P  F  Y  L  M  *  L  K  L  E  P  Y  L  A  *  Y  E  T  M  R  T  N  D  I  A  F  I  S  Q  L  V  M  D  *  N  M  N  A  L  V  F  L  R  *  R :   L  I  H  G  W  K  H  Y  R  V  I  A  S  C  G  L  T  E  </second_frame>
            <third_frame>   L  Y  G  C  L  Y  Y  V  K  P  L  F  S  F  S  F  P  C  K  I  T  W  F  D  Q  I  S  I  P  N  K  F  S :   F  K  V  A  G  K  H  K  H  H  G  *  W  S  S  R  N  R  G  V  *  R  S  F  S  S  F  N  F  W  *  R  P  H  A  *  P  R  F  I  *  I  Y  W  K  *  *  F  F  K  :  I  H  *  *  I  V  D  *  K  K  I  E  R  G  C  F  N  F  E  Y  V  *  P  Q  Q  A  T  L  D  V  W  H  R  W  S  R  K   : G  S  L  N  C  C  R  S  R  I  S  S  I  R  T  R  C  F  G  R  K  R  S  S  L  Q  S  S  :  I  R  T  H  *  *  S  S  K  G  C  T  T  F  G  V  F  G  H  E  N   : E  M  G  N  F  T  R  R  T  S  S  S  *  *  H  *  R  *  *  L  A  A  *  I  F  C  P  S  G  I  V  Y  L  L  V  F  V  M  H  R :   S  K  P  P  R  F  N  P  S  I  *  C  S  *  S  W  N  L  T  L  P  D  T  R  Q  *  G  Q  T  I  L  L  L  Y  L  N  S  L  W  T  E  I  *  M  L  *  Y  F  *  D  K   : G  *  F  M  V  G  S  I  T  E  *  L  Q  A  A  V  *  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78468" stop="78432"/>
                    <exon start="76981" stop="76831"/>
                    <exon start="76724" stop="76613"/>
                    <exon start="76480" stop="76398"/>
                    <exon start="74951" stop="74888"/>
                    <exon start="74772" stop="74655"/>
                    <exon start="72130" stop="71976"/>
                    <exon start="71719" stop="71666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLIKYQFPTSSVLKLLANINIMGDGPRGIEVFEDHFQASTSGEDPMHSPDLSKYIGSNDSLRSISRSWTRRKLKGAASILNMFSLNKLPWMSGTDGQEKVVLTAAEVESLRSELGALEEREAHCKAQLEHIDEVVRAARLSGYLDMRMRWATLPGEPLPVDDTDVDDWLPRFFVLQGSCIFWYSSCTDLSPQDSTLLSDVVEVGTLPCLIRDNEDKRYCFYISTRYGLKYECSSISKIKVDSWLEALQSDCKLRSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76980" e_stop="76831"/>
            <exon e_start="76724" e_stop="76613"/>
            <exon e_start="76480" e_stop="76324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.502" e_score="0.993"/>
          <exon-intron don_prob="0.992" acc_prob="0.712" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="76980" e_stop="76831" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.502">
            <gDNA_intron_boundary i_start="76830" i_stop="76725" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76724" e_stop="76613" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.712">
            <gDNA_intron_boundary i_start="76612" i_stop="76481" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76480" e_stop="76324" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76980" stop="76831"/>
              <exon start="76724" stop="76613"/>
              <exon start="76480" stop="76324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAAGTTGCTGGCAAACATAAACATCATGGGTGATGGTCCTCGAGGAATAGAGGTGTTTGAAGATCATTTTCAAGCTTCAACTTCTGGTGAAGACCCCATGCATAGCCCAGATTTATCTAAATATATTGGAAGTAATGATTCTTTAAG : ATCCATTAGTAGATCGTGGACTAGAAGAAAATTGAAAGGGGCTGCTTCAATTTTGAATATGTTTAGCCTCAACAAGCTACCTTGGATGTCTGGCACAGATGGTCAAGAAAAG : GTAGTCTTAACTGCTGCAGAAGTAGAATCTCTTCGATCAGAACTCGGTGCTTTGGAAGAAAGAGAAGCTCATTGCAAAGCTCAGTAAGATTTGATACCCCCTTTTGTGGGCTCGCTTGTGCCTTATGTGACCTATTCTGTTTTTCCTTATATATAAC</gDNA_template>
            <first_frame> F  K  V  A  G  K  H  K  H  H  G  *  W  S  S  R  N  R  G  V  *  R  S  F  S  S  F  N  F  W  *  R  P  H  A  *  P  R  F  I  *  I  Y  W  K  *  *  F  F  K  :  I  H  *  *  I  V  D  *  K  K  I  E  R  G  C  F  N  F  E  Y  V  *  P  Q  Q  A  T  L  D  V  W  H  R  W  S  R  K   : G  S  L  N  C  C  R  S  R  I  S  S  I  R  T  R  C  F  G  R  K  R  S  S  L  Q  S  S  V  R  F  D  T  P  F  C  G  L  A  C  A  L  C  D  L  F  C  F  S  L  Y  I   </first_frame>
            <second_frame>  L  K  L  L  A  N  I  N  I  M  G  D  G  P  R  G  I  E  V  F  E  D  H  F  Q  A  S  T  S  G  E  D  P  M  H  S  P  D  L  S  K  Y  I  G  S  N  D  S  L  R :   S  I  S  R  S  W  T  R  R  K  L  K  G  A  A  S  I  L  N  M  F  S  L  N  K  L  P  W  M  S  G  T  D  G  Q  E  K  :  V  V  L  T  A  A  E  V  E  S  L  R  S  E  L  G  A  L  E  E  R  E  A  H  C  K  A  Q  *  D  L  I  P  P  F  V  G  S  L  V  P  Y  V  T  Y  S  V  F  P  Y  I  *  </second_frame>
            <third_frame>   *  S  C  W  Q  T  *  T  S  W  V  M  V  L  E  E  *  R  C  L  K  I  I  F  K  L  Q  L  L  V  K  T  P  C  I  A  Q  I  Y  L  N  I  L  E  V  M  I  L  *   : D  P  L  V  D  R  G  L  E  E  N  *  K  G  L  L  Q  F  *  I  C  L  A  S  T  S  Y  L  G  C  L  A  Q  M  V  K  K  R :   *  S  *  L  L  Q  K  *  N  L  F  D  Q  N  S  V  L  W  K  K  E  K  L  I  A  K  L  S  K  I  *  Y  P  L  L  W  A  R  L  C  L  M  *  P  I  L  F  F  L  I  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76979" stop="76831"/>
                    <exon start="76724" stop="76613"/>
                    <exon start="76480" stop="76394"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLLANINIMGDGPRGIEVFEDHFQASTSGEDPMHSPDLSKYIGSNDSLRSISRSWTRRKLKGAASILNMFSLNKLPWMSGTDGQEKVVLTAAEVESLRSELGALEEREAHCKAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="85627" PGL_stop="85052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85627" e_stop="85052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="85627" e_stop="85052" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85627" stop="85052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85524" stop="85133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACTACAGATACTCAGCAATAGTAACTAACAAGTCTTCTAAGACATTGAAGAACTTGAAGCTTTCAGTATCCCAGCTTTATGGTTCGCTCTGGGGTCTTTCAAAGTACGGTGACTCCTACGTGTTTCCAGCCTGGATCAACTCGTTACCAACTGGAAAAAGCCTCGAGTTTGTTTACATTCACACTGCTAATTCTCCTGCAGTGGTCTCAGTATCAAGCTACACTCTTGACTAAAACGAGAGAATATTCACTTTTCGAGGGGTTTAAATGTAAGATTTGTGCAGCTTGTTTGTAATTTTTCAACTTCTAGTTGCTTTGTAGTTTGGTTATTACTTATCAGTGTTTTAGTTGATGAAGTAAGGCGGATATTTGGACGAAGAAAGGAGCGAAGAGACGAATTAAAACAAGTGCTCATCCTCTTTCTTCTCCACTTCATTTTGTCACAAGATCCATAGTCATGTATTTGAAAGAAAGTTGCTTCTCCACAGAGAGTACATATATGGAAGTCTTCATTTCCTTTGTAACTTATGCAACCTCAACGTTTTCGTGTTTATAATATTTTCTCCTCTGATTC</gDNA_template>
            <first_frame> L  T  T  D  T  Q  Q  *  *  L  T  S  L  L  R  H  *  R  T  *  S  F  Q  Y  P  S  F  M  V  R  S  G  V  F  Q  S  T  V  T  P  T  C  F  Q  P  G  S  T  R  Y  Q  L  E  K  A  S  S  L  F  T  F  T  L  L  I  L  L  Q  W  S  Q  Y  Q  A  T  L  L  T  K  T  R  E  Y  S  L  F  E  G  F  K  C  K  I  C  A  A  C  L  *  F  F  N  F  *  L  L  C  S  L  V  I  T  Y  Q  C  F  S  *  *  S  K  A  D  I  W  T  K  K  G  A  K  R  R  I  K  T  S  A  H  P  L  S  S  P  L  H  F  V  T  R  S  I  V  M  Y  L  K  E  S  C  F  S  T  E  S  T  Y  M  E  V  F  I  S  F  V  T  Y  A  T  S  T  F  S  C  L  *  Y  F  L  L  *  F </first_frame>
            <second_frame>  L  L  Q  I  L  S  N  S  N  *  Q  V  F  *  D  I  E  E  L  E  A  F  S  I  P  A  L  W  F  A  L  G  S  F  K  V  R  *  L  L  R  V  S  S  L  D  Q  L  V  T  N  W  K  K  P  R  V  C  L  H  S  H  C  *  F  S  C  S  G  L  S  I  K  L  H  S  *  L  K  R  E  N  I  H  F  S  R  G  L  N  V  R  F  V  Q  L  V  C  N  F  S  T  S  S  C  F  V  V  W  L  L  L  I  S  V  L  V  D  E  V  R  R  I  F  G  R  R  K  E  R  R  D  E  L  K  Q  V  L  I  L  F  L  L  H  F  I  L  S  Q  D  P  *  S  C  I  *  K  K  V  A  S  P  Q  R  V  H  I  W  K  S  S  F  P  L  *  L  M  Q  P  Q  R  F  R  V  Y  N  I  F  S  S  D   </second_frame>
            <third_frame>   Y  Y  R  Y  S  A  I  V  T  N  K  S  S  K  T  L  K  N  L  K  L  S  V  S  Q  L  Y  G  S  L  W  G  L  S  K  Y  G  D  S  Y  V  F  P  A  W  I  N  S  L  P  T  G  K  S  L  E  F  V  Y  I  H  T  A  N  S  P  A  V  V  S  V  S  S  Y  T  L  D  *  N  E  R  I  F  T  F  R  G  V  *  M  *  D  L  C  S  L  F  V  I  F  Q  L  L  V  A  L  *  F  G  Y  Y  L  S  V  F  *  L  M  K  *  G  G  Y  L  D  E  E  R  S  E  E  T  N  *  N  K  C  S  S  S  F  F  S  T  S  F  C  H  K  I  H  S  H  V  F  E  R  K  L  L  L  H  R  E  Y  I  Y  G  S  L  H  F  L  C  N  L  C  N  L  N  V  F  V  F  I  I  F  S  P  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85567" stop="85331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQYPSFMVRSGVFQSTVTPTCFQPGSTRYQLEKASSLFTFTLLILLQWSQYQATLLTKTREYSLFEGFKCKICAACL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85625" stop="85392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYRYSAIVTNKSSKTLKNLKLSVSQLYGSLWGLSKYGDSYVFPAWINSLPTGKSLEFVYIHTANSPAVVSVSSYTLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85395" stop="85171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKRENIHFSRGLNVRFVQLVCNFSTSSCFVVWLLLISVLVDEVRRIFGRRKERRDELKQVLILFLLHFILSQDP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85270" stop="85070"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKADIWTKKGAKRRIKTSAHPLSSPLHFVTRSIVMYLKESCFSTESTYMEVFISFVTYATSTFSCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="85059" PGL_stop="85671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85059" e_stop="85671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="85059" e_stop="85671" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85059" stop="85671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGAAAATATTATAAACACGAAAACGTTGAGGTTGCATAAGTTACAAAGGAAATGAAGACTTCCATATATGTACTCTCTGTGGAGAAGCAACTTTCTTTCAAATACATGACTATGGATCTTGTGACAAAATGAAGTGGAGAAGAAAGAGGATGAGCACTTGTTTTAATTCGTCTCTTCGCTCCTTTCTTCGTCCAAATATCCGCCTTACTTCATCAACTAAAACACTGATAAGTAATAACCAAACTACAAAGCAACTAGAAGTTGAAAAATTACAAACAAGCTGCACAAATCTTACATTTAAACCCCTCGAAAAGTGAATATTCTCTCGTTTTAGTCAAGAGTGTAGCTTGATACTGAGACCACTGCAGGAGAATTAGCAGTGTGAATGTAAACAAACTCGAGGCTTTTTCCAGTTGGTAACGAGTTGATCCAGGCTGGAAACACGTAGGAGTCACCGTACTTTGAAAGACCCCAGAGCGAACCATAAAGCTGGGATACTGAAAGCTTCAAGTTCTTCAATGTCTTAGAAGACTTGTTAGTTACTATTGCTGAGTATCTGTAGTAAGTTTTCCCCTCGTGTACCCATGAAGTTGTTTCCTTTTGCTCAATA</gDNA_template>
            <first_frame> R  R  K  Y  Y  K  H  E  N  V  E  V  A  *  V  T  K  E  M  K  T  S  I  Y  V  L  S  V  E  K  Q  L  S  F  K  Y  M  T  M  D  L  V  T  K  *  S  G  E  E  R  G  *  A  L  V  L  I  R  L  F  A  P  F  F  V  Q  I  S  A  L  L  H  Q  L  K  H  *  *  V  I  T  K  L  Q  S  N  *  K  L  K  N  Y  K  Q  A  A  Q  I  L  H  L  N  P  S  K  S  E  Y  S  L  V  L  V  K  S  V  A  *  Y  *  D  H  C  R  R  I  S  S  V  N  V  N  K  L  E  A  F  S  S  W  *  R  V  D  P  G  W  K  H  V  G  V  T  V  L  *  K  T  P  E  R  T  I  K  L  G  Y  *  K  L  Q  V  L  Q  C  L  R  R  L  V  S  Y  Y  C  *  V  S  V  V  S  F  P  L  V  Y  P  *  S  C  F  L  L  L  N  </first_frame>
            <second_frame>  G  E  N  I  I  N  T  K  T  L  R  L  H  K  L  Q  R  K  *  R  L  P  Y  M  Y  S  L  W  R  S  N  F  L  S  N  T  *  L  W  I  L  *  Q  N  E  V  E  K  K  E  D  E  H  L  F  *  F  V  S  S  L  L  S  S  S  K  Y  P  P  Y  F  I  N  *  N  T  D  K  *  *  P  N  Y  K  A  T  R  S  *  K  I  T  N  K  L  H  K  S  Y  I  *  T  P  R  K  V  N  I  L  S  F  *  S  R  V  *  L  D  T  E  T  T  A  G  E  L  A  V  *  M  *  T  N  S  R  L  F  P  V  G  N  E  L  I  Q  A  G  N  T  *  E  S  P  Y  F  E  R  P  Q  S  E  P  *  S  W  D  T  E  S  F  K  F  F  N  V  L  E  D  L  L  V  T  I  A  E  Y  L  *  *  V  F  P  S  C  T  H  E  V  V  S  F  C  S  I </second_frame>
            <third_frame>   E  K  I  L  *  T  R  K  R  *  G  C  I  S  Y  K  G  N  E  D  F  H  I  C  T  L  C  G  E  A  T  F  F  Q  I  H  D  Y  G  S  C  D  K  M  K  W  R  R  K  R  M  S  T  C  F  N  S  S  L  R  S  F  L  R  P  N  I  R  L  T  S  S  T  K  T  L  I  S  N  N  Q  T  T  K  Q  L  E  V  E  K  L  Q  T  S  C  T  N  L  T  F  K  P  L  E  K  *  I  F  S  R  F  S  Q  E  C  S  L  I  L  R  P  L  Q  E  N  *  Q  C  E  C  K  Q  T  R  G  F  F  Q  L  V  T  S  *  S  R  L  E  T  R  R  S  H  R  T  L  K  D  P  R  A  N  H  K  A  G  I  L  K  A  S  S  S  S  M  S  *  K  T  C  *  L  L  L  L  S  I  C  S  K  F  S  P  R  V  P  M  K  L  F  P  F  A  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85091" stop="85378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCISYKGNEDFHICTLCGEATFFQIHDYGSCDKMKWRRKRMSTCFNSSLRSFLRPNIRLTSSTKTLISNNQTTKQLEVEKLQTSCTNLTFKPLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="87815" PGL_stop="86482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87815" e_stop="87799"/>
            <exon e_start="87637" e_stop="87548"/>
            <exon e_start="87442" e_stop="87278"/>
            <exon e_start="87069" e_stop="86785"/>
            <exon e_start="86547" e_stop="86482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87815" e_stop="87799" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87798" i_stop="87638" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87637" e_stop="87548" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87547" i_stop="87443" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87442" e_stop="87278" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87277" i_stop="87070" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87069" e_stop="86785" e_length="285"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="86784" i_stop="86548" i_length="237"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86547" e_stop="86482" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87815" stop="87799"/>
              <exon start="87637" stop="87548"/>
              <exon start="87442" stop="87278"/>
              <exon start="87069" stop="86785"/>
              <exon start="86547" stop="86482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87815" stop="87799"/>
              <exon start="87637" stop="87548"/>
              <exon start="87442" stop="87278"/>
              <exon start="87069" stop="86903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCATGCATATCAG : TTATTCGAGTTTGCAGACAAATACAGAGGCAAGTATGATAGCAGTATTACTGTGGCCCAGAAGTACTATCGATCTGTTAGTGGATACGCG : GACGAATTACTGTGGGCCGCTGCTTGGCTGTACAAGGCATCTAACAAGCCATATTACTTGAATTACCTAGGGGAGAACGGCGATGCACTTGGTGGAACCGGTTGGTCCATGACCGAATTTGGTTGGGACGTCAAGTATGCTGGTGTCCAGACTCTTGCTGCTAAG : TTCCTGATGCAAGGAAATGCTGGTAACCATGCTGCTGTGTTTGAGAAGTACCAAGAAAAGGCTGAGAATTTTATGTGTGCATGTCTCGGAAAGGGTAACCAAAACATCCACAAGAGTCCAGGAGGTCTCATTTTCAGGCAAAGATGGAACAACATGCAATTTGTCACAAGTGCTTCATTCCTTGCAACTGTTTACTCTGACTATTTGGCATCTGCTGGAAAATCCCTCAAGTGTGCATCCGGTCCTGTATCATCACCCGAGCTCCTGGACTTTGCCAAGTCACAG : GTTGACTATCTACTTGGAGATAATCCAAGAGCGACAAGTTACATGGTGGGATACGGTAACAATTAC</gDNA_template>
            <first_frame> *  L  M  H  I  S :   Y  S  S  L  Q  T  N  T  E  A  S  M  I  A  V  L  L  W  P  R  S  T  I  D  L  L  V  D  T  R :   T  N  Y  C  G  P  L  L  G  C  T  R  H  L  T  S  H  I  T  *  I  T  *  G  R  T  A  M  H  L  V  E  P  V  G  P  *  P  N  L  V  G  T  S  S  M  L  V  S  R  L  L  L  L  S :   S  *  C  K  E  M  L  V  T  M  L  L  C  L  R  S  T  K  K  R  L  R  I  L  C  V  H  V  S  E  R  V  T  K  T  S  T  R  V  Q  E  V  S  F  S  G  K  D  G  T  T  C  N  L  S  Q  V  L  H  S  L  Q  L  F  T  L  T  I  W  H  L  L  E  N  P  S  S  V  H  P  V  L  Y  H  H  P  S  S  W  T  L  P  S  H  R :   L  T  I  Y  L  E  I  I  Q  E  R  Q  V  T  W  W  D  T  V  T  I   </first_frame>
            <second_frame>  N  S  C  I  S   : V  I  R  V  C  R  Q  I  Q  R  Q  V  *  *  Q  Y  Y  C  G  P  E  V  L  S  I  C  *  W  I  R   : G  R  I  T  V  G  R  C  L  A  V  Q  G  I  *  Q  A  I  L  L  E  L  P  R  G  E  R  R  C  T  W  W  N  R  L  V  H  D  R  I  W  L  G  R  Q  V  C  W  C  P  D  S  C  C  *   : V  P  D  A  R  K  C  W  *  P  C  C  C  V  *  E  V  P  R  K  G  *  E  F  Y  V  C  M  S  R  K  G  *  P  K  H  P  Q  E  S  R  R  S  H  F  Q  A  K  M  E  Q  H  A  I  C  H  K  C  F  I  P  C  N  C  L  L  *  L  F  G  I  C  W  K  I  P  Q  V  C  I  R  S  C  I  I  T  R  A  P  G  L  C  Q  V  T   : G  *  L  S  T  W  R  *  S  K  S  D  K  L  H  G  G  I  R  *  Q  L  </second_frame>
            <third_frame>   T  H  A  Y  Q  :  L  F  E  F  A  D  K  Y  R  G  K  Y  D  S  S  I  T  V  A  Q  K  Y  Y  R  S  V  S  G  Y  A  :  D  E  L  L  W  A  A  A  W  L  Y  K  A  S  N  K  P  Y  Y  L  N  Y  L  G  E  N  G  D  A  L  G  G  T  G  W  S  M  T  E  F  G  W  D  V  K  Y  A  G  V  Q  T  L  A  A  K  :  F  L  M  Q  G  N  A  G  N  H  A  A  V  F  E  K  Y  Q  E  K  A  E  N  F  M  C  A  C  L  G  K  G  N  Q  N  I  H  K  S  P  G  G  L  I  F  R  Q  R  W  N  N  M  Q  F  V  T  S  A  S  F  L  A  T  V  Y  S  D  Y  L  A  S  A  G  K  S  L  K  C  A  S  G  P  V  S  S  P  E  L  L  D  F  A  K  S  Q  :  V  D  Y  L  L  G  D  N  P  R  A  T  S  Y  M  V  G  Y  G  N  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87813" stop="87799"/>
                    <exon start="87637" stop="87548"/>
                    <exon start="87442" stop="87278"/>
                    <exon start="87069" stop="86785"/>
                    <exon start="86547" stop="86482"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THAYQLFEFADKYRGKYDSSITVAQKYYRSVSGYADELLWAAAWLYKASNKPYYLNYLGENGDALGGTGWSMTEFGWDVKYAGVQTLAAKFLMQGNAGNHAAVFEKYQEKAENFMCACLGKGNQNIHKSPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGKSLKCASGPVSSPELLDFAKSQVDYLLGDNPRATSYMVGYGNNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="112173" PGL_stop="116891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112173" e_stop="112471"/>
            <exon e_start="113046" e_stop="113261"/>
            <exon e_start="116075" e_stop="116368"/>
            <exon e_start="116499" e_stop="116891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="0.814" acc_prob="0.647" e_score="0.993"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="112173" e_stop="112471" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113046" e_stop="113261" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.837">
            <gDNA_intron_boundary i_start="113262" i_stop="116074" i_length="2813"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="116075" e_stop="116368" e_length="294"/>
          </exon>
          <intron i_serial="3" don_prob="0.814" acc_prob="0.647">
            <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="116499" e_stop="116891" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112173" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="116075" stop="116181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112248" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="116075" stop="116368"/>
              <exon start="116499" stop="116556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112248" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="116075" stop="116368"/>
              <exon start="116499" stop="116524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112263" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="116075" stop="116161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112267" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="116075" stop="116284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116172" stop="116368"/>
              <exon start="116499" stop="116763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116247" stop="116368"/>
              <exon start="116499" stop="116891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116259" stop="116368"/>
              <exon start="116499" stop="116879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTAAAGGGACCCCCAAATGTCCACTTGCTCTGTATTTTTTTCATAAAAAATGGAGCAATTTTGGACCATTCAGCCATCGGAAGTTCCAATAGGCGATGCGTTTTGGACTCTTTCTGATTCACACTTTGCCTATTCTCAAAACCCCACCATTGAATTTTTTTTTTCTTTCCATTTTTTTGGTTGGAGATGATGAACAATATGGAAGATGAGTACATTAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTT : GTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAG : AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG : ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAGATGGGGCAATAT</gDNA_template>
            <first_frame> K  *  R  D  P  Q  M  S  T  C  S  V  F  F  S  *  K  M  E  Q  F  W  T  I  Q  P  S  E  V  P  I  G  D  A  F  W  T  L  S  D  S  H  F  A  Y  S  Q  N  P  T  I  E  F  F  F  S  F  H  F  F  G  W  R  *  *  T  I  W  K  M  S  T  L  G  D  T  I  G  M  C  S  T  T  I  S  V  V  L  H  L  L  N  A  S  E  L  L  L  I  L :   Y  G  H  W  *  E  G  L  I  N  H  K  G  T  S  H  L  L  A  D  V  S  C  K  G  T  L  K  L  G  V  *  E  K  *  M  L  G  Q  V  F  Q  L  P  P  A  R  R  G  *  S  F  *  M  T  R  N  T  S  L  V  *  R  L  L  V  E  I  T  G  F  R :   T  T  H  R  L  S  R  F  I  P  R  S  L  T  G  D  L  E  Q  L  *  S  S  H  L  *  *  T  Y  Q  M  G  I  L  R  T  K  H  A  S  L  W  R  P  S  S  G  V  T  S  N  H  *  L  M  Y  Q  S  V  W  R  Y  R  A  I  P  T  L  L  I  E  S  S  F  T  V  F  A  D  A  A  A  W  A  Y  T  F  *  L  L  E  R  T  W  I  L  I  R :   L  F  L  Q  W  L  F  L  I  V  K  N  Q  Y  *  F  W  P  C  K  I  L  S  L  V  N  I  C  Y  W  M  S  F  R  K  S  *  D  H  I  L  P  Y  C  G  K  G  V  L  Y  T  R  L  I  *  R  L  M  C  *  *  Y  Y  L  I  P  *  N  C  N  C  A  F  F  V  F  V  P  V  Q  E  K  S  S  L  F  V  V  V  S  F  I  L  R  S  V  L  Y  M  I  S  W  C  I  I  C  L  Q  E  H  V  D  L  *  S  N  L  I  D  Y  G  M  C  A  E  L  R  W  G  N   </first_frame>
            <second_frame>  S  K  G  T  P  K  C  P  L  A  L  Y  F  F  H  K  K  W  S  N  F  G  P  F  S  H  R  K  F  Q  *  A  M  R  F  G  L  F  L  I  H  T  L  P  I  L  K  T  P  P  L  N  F  F  F  L  S  I  F  L  V  G  D  D  E  Q  Y  G  R  *  V  H  *  E  T  P  *  A  C  A  R  P  Q  S  V  *  F  F  T  C  *  T  H  Q  S  S  C  *  S   : C  M  V  I  G  E  K  V  *  S  T  T  K  V  Q  A  I  C  *  Q  M  C  R  A  R  G  P  *  N  W  E  C  E  R  S  E  C  *  V  R  S  S  S  Y  H  Q  Q  G  E  V  R  A  S  R  *  R  G  T  H  L  W  C  K  D  C  W  W  R  S  Q  A  S   : E  L  L  I  D  Y  H  G  S  S  R  G  H  *  R  E  T  W  N  N  C  N  R  V  I  C  S  R  H  T  R  W  E  Y  *  G  R  N  M  L  L  C  G  G  P  H  P  V  *  P  Q  I  I  S  *  C  I  R  A  F  G  G  T  G  P  Y  R  P  Y  *  *  N  L  A  S  Q  F  L  Q  M  Q  Q  R  G  L  I  R  F  S  C  W  S  V  H  G  F  *  L   : D  Y  S  C  N  G  Y  F  S  L  *  R  T  S  T  D  S  G  R  A  R  Y  *  A  L  *  I  F  A  T  G  *  A  F  V  S  H  K  I  I  S  Y  P  T  V  A  K  A  C  Y  T  L  V  S  S  R  G  *  C  A  N  S  I  I  L  S  P  R  T  V  T  V  P  F  L  F  L  Y  L  Y  K  K  K  V  P  C  L  L  L  Y  L  L  S  F  A  L  C  C  I  *  F  H  G  A  L  F  V  Y  K  N  M  W  I  C  E  A  I  *  L  I  M  V  C  V  L  S  L  D  G  A  I  </second_frame>
            <third_frame>   V  K  G  P  P  N  V  H  L  L  C  I  F  F  I  K  N  G  A  I  L  D  H  S  A  I  G  S  S  N  R  R  C  V  L  D  S  F  *  F  T  L  C  L  F  S  K  P  H  H  *  I  F  F  F  F  P  F  F  W  L  E  M  M  N  N  M  E  D  E  Y  I  R  R  H  H  R  H  V  L  D  H  N  Q  C  S  S  S  L  V  K  R  I  R  A  P  V  N  L  :  V  W  S  L  V  R  R  F  D  Q  P  Q  R  Y  K  P  F  V  S  R  C  V  V  Q  G  D  L  E  I  G  S  V  R  E  V  N  V  R  S  G  L  P  A  T  T  S  K  E  R  L  E  L  L  D  D  E  E  H  I  F  G  V  K  I  V  G  G  D  H  R  L  Q  :  N  Y  S  S  I  I  T  V  H  P  E  V  I  D  G  R  P  G  T  I  V  I  E  S  F  V  V  D  I  P  D  G  N  T  K  D  E  T  C  F  F  V  E  A  L  I  R  C  N  L  K  S  L  A  D  V  S  E  R  L  A  V  Q  G  H  T  D  P  I  D  R  I  *  L  H  S  F  C  R  C  S  S  V  G  L  Y  V  L  A  A  G  A  Y  M  D  F  D  *  :  I  I  L  A  M  A  I  S  H  C  E  E  P  V  L  I  L  A  V  Q  D  I  E  P  C  K  Y  L  L  L  D  E  L  S  *  V  I  R  S  Y  P  T  L  L  W  Q  R  R  A  I  H  S  S  H  L  E  A  D  V  L  I  V  L  S  Y  P  L  E  L  *  L  C  L  F  C  F  C  T  C  T  R  K  K  F  L  V  C  C  C  I  F  Y  P  S  L  C  V  V  Y  D  F  M  V  H  Y  L  F  T  R  T  C  G  F  V  K  Q  F  N  *  L  W  Y  V  C  *  A  *  M  G  Q  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112328" stop="112471"/>
                    <exon start="113046" stop="113261"/>
                    <exon start="116075" stop="116293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFFFPFFWLEMMNNMEDEYIRRHHRHVLDHNQCSSSLVKRIRAPVNLVWSLVRRFDQPQRYKPFVSRCVVQGDLEIGSVREVNVRSGLPATTSKERLELLDDEEHIFGVKIVGGDHRLQNYSSIITVHPEVIDGRPGTIVIESFVVDIPDGNTKDETCFFVEALIRCNLKSLADVSERLAVQGHTDPIDRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115051" e_stop="115662"/>
            <exon e_start="116075" e_stop="116368"/>
            <exon e_start="116499" e_stop="116891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.837" e_score="0.986"/>
          <exon-intron don_prob="0.814" acc_prob="0.647" e_score="0.922"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="115051" e_stop="115662" e_length="612"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.837">
            <gDNA_intron_boundary i_start="115663" i_stop="116074" i_length="412"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="116075" e_stop="116368" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.814" acc_prob="0.647">
            <gDNA_intron_boundary i_start="116369" i_stop="116498" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="116499" e_stop="116891" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115051" stop="115604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115309" stop="115662"/>
              <exon start="116075" stop="116368"/>
              <exon start="116499" stop="116526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116172" stop="116368"/>
              <exon start="116499" stop="116763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116247" stop="116368"/>
              <exon start="116499" stop="116891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116259" stop="116368"/>
              <exon start="116499" stop="116879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTATAATGAAATTTACCTTACCGTGAAAAGAACAGTTTATTGAGCTTTGTGTATACTCCTTTTCTGTCCATGGTCTTATGACTCTTATCATGTGCATGTACACTCATTAGGTTTGGTGTTTGTCAGGAATCTTTTGTTTTGTTTAGTTCCTTTATATACCACTAGAAAATGTAGAGAATCTTTTATGGACCTCTAATTTTTTTTTCTTAATATATACATTTATTGAGTATTAGACTGAAGCATATCAAGATGGAGTTATTCAAGCTATTTTACTTCCAGAAAAAAAGAAGTGCAGATGGAGTGGAATGAATGTTGAAAATTCTTAAAGCCATCAACAACTAGTTTTGGATTAAGGTAGTAGCAGTTGTAGTTGTTGGACTGATAGCTCAGATGGTTAGCATATTGAACTGTTCCATGGTTGCTTTTTGGCTAAGAAATGGAGAACTAAGACGTGAATGCAAGGATAGCTTTTCCTCCATGAGAAGAGGGGTTTCTGTTGTTTCATATCGAAGAATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTTGCCAAAACAAGATTGTGCAGCTCCCCTCTATCGCTTCTCTTATTAA : AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAG : ATTATTCTTGCAATGGCTATTTCTCATTGTGAAGAACCAGTACTGATTCTGGCCGTGCAAGATATTGAGCCTTGTAAATATTTGCTACTGGATGAGCTTTCGTAAGTCATAAGATCATATCCTACCCTACTGTGGCAAAGGCGTGCTATACACTCGTCTCATCTAGAGGCTGATGTGCTAATAGTATTATCTTATCCCCTAGAACTGTAACTGTGCCTTTTTTGTTTTTGTACCTGTACAAGAAAAAAGTTCCTTGTTTGTTGTTGTATCTTTTATCCTTCGCTCTGTGTTGTATATGATTTCATGGTGCATTATTTGTTTACAAGAACATGTGGATTTGTGAAGCAATTTAATTGATTATGGTATGTGTGCTGAGCTTAGATGGGGCAATAT</gDNA_template>
            <first_frame> Q  F  I  M  K  F  T  L  P  *  K  E  Q  F  I  E  L  C  V  Y  S  F  S  V  H  G  L  M  T  L  I  M  C  M  Y  T  H  *  V  W  C  L  S  G  I  F  C  F  V  *  F  L  Y  I  P  L  E  N  V  E  N  L  L  W  T  S  N  F  F  F  L  I  Y  T  F  I  E  Y  *  T  E  A  Y  Q  D  G  V  I  Q  A  I  L  L  P  E  K  K  K  C  R  W  S  G  M  N  V  E  N  S  *  S  H  Q  Q  L  V  L  D  *  G  S  S  S  C  S  C  W  T  D  S  S  D  G  *  H  I  E  L  F  H  G  C  F  L  A  K  K  W  R  T  K  T  *  M  Q  G  *  L  F  L  H  E  K  R  G  F  C  C  F  I  S  K  N  R  Q  K  F  S  E  N  V  S  R  D  A  R  T  I  L  P  K  Q  D  C  A  A  P  L  Y  R  F  S  Y  *  :  N  Y  S  S  I  I  T  V  H  P  E  V  I  D  G  R  P  G  T  I  V  I  E  S  F  V  V  D  I  P  D  G  N  T  K  D  E  T  C  F  F  V  E  A  L  I  R  C  N  L  K  S  L  A  D  V  S  E  R  L  A  V  Q  G  H  T  D  P  I  D  R  I  *  L  H  S  F  C  R  C  S  S  V  G  L  Y  V  L  A  A  G  A  Y  M  D  F  D  *  :  I  I  L  A  M  A  I  S  H  C  E  E  P  V  L  I  L  A  V  Q  D  I  E  P  C  K  Y  L  L  L  D  E  L  S  *  V  I  R  S  Y  P  T  L  L  W  Q  R  R  A  I  H  S  S  H  L  E  A  D  V  L  I  V  L  S  Y  P  L  E  L  *  L  C  L  F  C  F  C  T  C  T  R  K  K  F  L  V  C  C  C  I  F  Y  P  S  L  C  V  V  Y  D  F  M  V  H  Y  L  F  T  R  T  C  G  F  V  K  Q  F  N  *  L  W  Y  V  C  *  A  *  M  G  Q  Y </first_frame>
            <second_frame>  N  L  *  *  N  L  P  Y  R  E  K  N  S  L  L  S  F  V  Y  T  P  F  L  S  M  V  L  *  L  L  S  C  A  C  T  L  I  R  F  G  V  C  Q  E  S  F  V  L  F  S  S  F  I  Y  H  *  K  M  *  R  I  F  Y  G  P  L  I  F  F  S  *  Y  I  H  L  L  S  I  R  L  K  H  I  K  M  E  L  F  K  L  F  Y  F  Q  K  K  R  S  A  D  G  V  E  *  M  L  K  I  L  K  A  I  N  N  *  F  W  I  K  V  V  A  V  V  V  V  G  L  I  A  Q  M  V  S  I  L  N  C  S  M  V  A  F  W  L  R  N  G  E  L  R  R  E  C  K  D  S  F  S  S  M  R  R  G  V  S  V  V  S  Y  R  R  I  D  R  N  S  V  K  M  C  Q  G  M  L  G  P  F  C  Q  N  K  I  V  Q  L  P  S  I  A  S  L  I  K :   T  T  H  R  L  S  R  F  I  P  R  S  L  T  G  D  L  E  Q  L  *  S  S  H  L  *  *  T  Y  Q  M  G  I  L  R  T  K  H  A  S  L  W  R  P  S  S  G  V  T  S  N  H  *  L  M  Y  Q  S  V  W  R  Y  R  A  I  P  T  L  L  I  E  S  S  F  T  V  F  A  D  A  A  A  W  A  Y  T  F  *  L  L  E  R  T  W  I  L  I  R :   L  F  L  Q  W  L  F  L  I  V  K  N  Q  Y  *  F  W  P  C  K  I  L  S  L  V  N  I  C  Y  W  M  S  F  R  K  S  *  D  H  I  L  P  Y  C  G  K  G  V  L  Y  T  R  L  I  *  R  L  M  C  *  *  Y  Y  L  I  P  *  N  C  N  C  A  F  F  V  F  V  P  V  Q  E  K  S  S  L  F  V  V  V  S  F  I  L  R  S  V  L  Y  M  I  S  W  C  I  I  C  L  Q  E  H  V  D  L  *  S  N  L  I  D  Y  G  M  C  A  E  L  R  W  G  N   </second_frame>
            <third_frame>   I  Y  N  E  I  Y  L  T  V  K  R  T  V  Y  *  A  L  C  I  L  L  F  C  P  W  S  Y  D  S  Y  H  V  H  V  H  S  L  G  L  V  F  V  R  N  L  L  F  C  L  V  P  L  Y  T  T  R  K  C  R  E  S  F  M  D  L  *  F  F  F  L  N  I  Y  I  Y  *  V  L  D  *  S  I  S  R  W  S  Y  S  S  Y  F  T  S  R  K  K  E  V  Q  M  E  W  N  E  C  *  K  F  L  K  P  S  T  T  S  F  G  L  R  *  *  Q  L  *  L  L  D  *  *  L  R  W  L  A  Y  *  T  V  P  W  L  L  F  G  *  E  M  E  N  *  D  V  N  A  R  I  A  F  P  P  *  E  E  G  F  L  L  F  H  I  E  E  S  T  E  I  Q  *  K  C  V  K  G  C  *  D  H  F  A  K  T  R  L  C  S  S  P  L  S  L  L  L  L   : K  L  L  I  D  Y  H  G  S  S  R  G  H  *  R  E  T  W  N  N  C  N  R  V  I  C  S  R  H  T  R  W  E  Y  *  G  R  N  M  L  L  C  G  G  P  H  P  V  *  P  Q  I  I  S  *  C  I  R  A  F  G  G  T  G  P  Y  R  P  Y  *  *  N  L  A  S  Q  F  L  Q  M  Q  Q  R  G  L  I  R  F  S  C  W  S  V  H  G  F  *  L   : D  Y  S  C  N  G  Y  F  S  L  *  R  T  S  T  D  S  G  R  A  R  Y  *  A  L  *  I  F  A  T  G  *  A  F  V  S  H  K  I  I  S  Y  P  T  V  A  K  A  C  Y  T  L  V  S  S  R  G  *  C  A  N  S  I  I  L  S  P  R  T  V  T  V  P  F  L  F  L  Y  L  Y  K  K  K  V  P  C  L  L  L  Y  L  L  S  F  A  L  C  C  I  *  F  H  G  A  L  F  V  Y  K  N  M  W  I  C  E  A  I  *  L  I  M  V  C  V  L  S  L  D  G  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115397" stop="115662"/>
                    <exon start="116075" stop="116138"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWIKVVAVVVVGLIAQMVSILNCSMVAFWLRNGELRRECKDSFSSMRRGVSVVSYRRIDRNSVKMCQGMLGPFCQNKIVQLPSIASLIKTTHRLSRFIPRSLTGDLEQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112390" e_stop="112471"/>
            <exon e_start="113046" e_stop="113261"/>
            <exon e_start="114628" e_stop="114705"/>
            <exon e_start="115567" e_stop="115616"/>
            <exon e_start="115709" e_stop="115715"/>
            <exon e_start="116075" e_stop="116468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="0.805"/>
          <exon-intron don_prob="0.999" acc_prob="0.291" e_score="0.963"/>
          <exon-intron don_prob="0.683" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="0.580"/>
          <exon-intron don_prob="0.000" acc_prob="0.837" e_score="0.714"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.805">
            <gDNA_exon_boundary e_start="112390" e_stop="112471" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112472" i_stop="113045" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="113046" e_stop="113261" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.291">
            <gDNA_intron_boundary i_start="113262" i_stop="114627" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="0.897">
            <gDNA_exon_boundary e_start="114628" e_stop="114705" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.683" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114706" i_stop="115566" i_length="861"/>
          </intron>
          <exon e_serial="4" e_score="0.580">
            <gDNA_exon_boundary e_start="115567" e_stop="115616" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="115617" i_stop="115708" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="115709" e_stop="115715" e_length="7"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.837">
            <gDNA_intron_boundary i_start="115716" i_stop="116074" i_length="359"/>
          </intron>
          <exon e_serial="6" e_score="0.926">
            <gDNA_exon_boundary e_start="116075" e_stop="116468" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112390" stop="112471"/>
              <exon start="113046" stop="113261"/>
              <exon start="114628" stop="114705"/>
              <exon start="115567" stop="115616"/>
              <exon start="115709" stop="115715"/>
              <exon start="116075" stop="116468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589151" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAGACACCATAGGCATGTGCTCGACCACAATCAGTGTAGTTCTTCACTTGTTAAACGCATCAGAGCTCCTGTTAATCTT : GTATGGTCATTGGTGAGAAGGTTTGATCAACCACAAAGGTACAAGCCATTTGTTAGCAGATGTGTCGTGCAAGGGGACCTTGAAATTGGGAGTGTGAGAGAAGTGAATGTTAGGTCAGGTCTTCCAGCTACCACCAGCAAGGAGAGGTTAGAGCTTCTAGATGACGAGGAACACATCTTTGGTGTAAAGATTGTTGGTGGAGATCACAGGCTTCAG : GAAATGGAGAAGTGAATACCTGGTCAACTTTCCCTCGTAGCAAGAGACGTTTCTGTGGTTTTGTTTCTTGAATGGGAT : AATCGACAGAAATTCAGTGAAAATGTGTCAAGGGATGCTAGGACCATTTT : GACCTGC : AACTACTCATCGATTATCACGGTTCATCCCGAGGTCATTGACGGGAGACCTGGAACAATTGTAATCGAGTCATTTGTAGTAGACATACCAGATGGGAATACTAAGGACGAAACATGCTTCTTTGTGGAGGCCCTCATCCGGTGTAACCTCAAATCATTAGCTGATGTATCAGAGCGTTTGGCGGTACAGGGCCATACCGACCCTATTGATAGAATCTAGCTTCACAGTTTTTGCAGATGCAGCAGCGTGGGCTTATACGTTTTAGCTGCTGGAGCGTACATGGATTTTGATTAGGTGAGTAGAGCAACTGGTATTATGATTTTCCTCCTTGATCTCAGATGAGTGTGTGTATATATATATATATTTTTTGTTGATGCTTCCTTCAATCATCTGA</gDNA_template>
            <first_frame> *  E  T  P  *  A  C  A  R  P  Q  S  V  *  F  F  T  C  *  T  H  Q  S  S  C  *  S   : C  M  V  I  G  E  K  V  *  S  T  T  K  V  Q  A  I  C  *  Q  M  C  R  A  R  G  P  *  N  W  E  C  E  R  S  E  C  *  V  R  S  S  S  Y  H  Q  Q  G  E  V  R  A  S  R  *  R  G  T  H  L  W  C  K  D  C  W  W  R  S  Q  A  S   : G  N  G  E  V  N  T  W  S  T  F  P  R  S  K  R  R  F  C  G  F  V  S  *  M  G   : *  S  T  E  I  Q  *  K  C  V  K  G  C  *  D  H  F  :  D  L   : Q  L  L  I  D  Y  H  G  S  S  R  G  H  *  R  E  T  W  N  N  C  N  R  V  I  C  S  R  H  T  R  W  E  Y  *  G  R  N  M  L  L  C  G  G  P  H  P  V  *  P  Q  I  I  S  *  C  I  R  A  F  G  G  T  G  P  Y  R  P  Y  *  *  N  L  A  S  Q  F  L  Q  M  Q  Q  R  G  L  I  R  F  S  C  W  S  V  H  G  F  *  L  G  E  *  S  N  W  Y  Y  D  F  P  P  *  S  Q  M  S  V  C  I  Y  I  Y  I  F  C  *  C  F  L  Q  S  S   </first_frame>
            <second_frame>  R  R  H  H  R  H  V  L  D  H  N  Q  C  S  S  S  L  V  K  R  I  R  A  P  V  N  L  :  V  W  S  L  V  R  R  F  D  Q  P  Q  R  Y  K  P  F  V  S  R  C  V  V  Q  G  D  L  E  I  G  S  V  R  E  V  N  V  R  S  G  L  P  A  T  T  S  K  E  R  L  E  L  L  D  D  E  E  H  I  F  G  V  K  I  V  G  G  D  H  R  L  Q  :  E  M  E  K  *  I  P  G  Q  L  S  L  V  A  R  D  V  S  V  V  L  F  L  E  W  D  :  N  R  Q  K  F  S  E  N  V  S  R  D  A  R  T  I  L :   T  C  :  N  Y  S  S  I  I  T  V  H  P  E  V  I  D  G  R  P  G  T  I  V  I  E  S  F  V  V  D  I  P  D  G  N  T  K  D  E  T  C  F  F  V  E  A  L  I  R  C  N  L  K  S  L  A  D  V  S  E  R  L  A  V  Q  G  H  T  D  P  I  D  R  I  *  L  H  S  F  C  R  C  S  S  V  G  L  Y  V  L  A  A  G  A  Y  M  D  F  D  *  V  S  R  A  T  G  I  M  I  F  L  L  D  L  R  *  V  C  V  Y  I  Y  I  F  F  V  D  A  S  F  N  H  L  </second_frame>
            <third_frame>   G  D  T  I  G  M  C  S  T  T  I  S  V  V  L  H  L  L  N  A  S  E  L  L  L  I  L :   Y  G  H  W  *  E  G  L  I  N  H  K  G  T  S  H  L  L  A  D  V  S  C  K  G  T  L  K  L  G  V  *  E  K  *  M  L  G  Q  V  F  Q  L  P  P  A  R  R  G  *  S  F  *  M  T  R  N  T  S  L  V  *  R  L  L  V  E  I  T  G  F  R :   K  W  R  S  E  Y  L  V  N  F  P  S  *  Q  E  T  F  L  W  F  C  F  L  N  G  I :   I  D  R  N  S  V  K  M  C  Q  G  M  L  G  P  F   : *  P  A :   T  T  H  R  L  S  R  F  I  P  R  S  L  T  G  D  L  E  Q  L  *  S  S  H  L  *  *  T  Y  Q  M  G  I  L  R  T  K  H  A  S  L  W  R  P  S  S  G  V  T  S  N  H  *  L  M  Y  Q  S  V  W  R  Y  R  A  I  P  T  L  L  I  E  S  S  F  T  V  F  A  D  A  A  A  W  A  Y  T  F  *  L  L  E  R  T  W  I  L  I  R  *  V  E  Q  L  V  L  *  F  S  S  L  I  S  D  E  C  V  Y  I  Y  I  Y  F  L  L  M  L  P  S  I  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114643" stop="114705"/>
                    <exon start="115567" stop="115616"/>
                    <exon start="115709" stop="115715"/>
                    <exon start="116075" stop="116293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPGQLSLVARDVSVVLFLEWDNRQKFSENVSRDARTILTCNYSSIITVHPEVIDGRPGTIVIESFVVDIPDGNTKDETCFFVEALIRCNLKSLADVSERLAVQGHTDPIDRI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165B12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112391" stop="112471"/>
                    <exon start="113046" stop="113261"/>
                    <exon start="114628" stop="114642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRHHRHVLDHNQCSSSLVKRIRAPVNLVWSLVRRFDQPQRYKPFVSRCVVQGDLEIGSVREVNVRSGLPATTSKERLELLDDEEHIFGVKIVGGDHRLQEMEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 238 chains have been computed
$ 
$ memory statistics:
$ 132712 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 2949 bytes was the average size of a spliced alignment
$ 15768 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1971 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 273 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:48:20
-->
