<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:22:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578446" ref_strand="+" ref_description="SGN-U578446 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|15231130|ref|NP_191434.1| (e_value=0) citrate synthase -related protein [Arabidopsis thaliana]; (*ATH) AT3G58750.1 (e_value=0)  Symbol: None | citrate synthase, glyoxysomal, putative, strong similarity to SP:P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase | chr3:21735291-21738667 REVERSE | Aliases: T20N10.100... ; (*SWP) sp|Q9LXS6|CISY2_ARATH (e_value=0) Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2; ">
      <seq>attttcccagtaattcaccacaaattactaatcaatgttgaatttgcagaaaacaaagatcaataaattcacacaaatataaataaacaacgaaacacaaaatcaaattcatttctattttctaaaatcaaacatagaaaaaaaattaaaaattctaagaaaaagcattttcatggagaacggaaattcttcatcagttgctcgagggagattagcggtgctttcagctcatctcgcagcatcactcaacgtttccgatttaacaacctttaaacttctagaaacttccggtgtatcttccgtttccggcgtcgaacctccgcggaatctaaaaggtgcgttgacgatcatcgatgaacggaccggtaagaagtatccggttcaggtttctgaggatggcactatcaaagccaacgacttgaagaagataacaacaggacagaatgataagggtcttaagctttatgatccaggctatctcaacacggcacctgttaggtcatcaatatgttatattgatggtgatgccgggatccttagatatcgaggctaccctattgaagagctggccgagggaagttccttcttggaagtggcatatcttttgttgtatggtaatttaccatctgagaatcagttagcagactgggagttcacagtttcacagcattcagcagttccacaaggactcttggatatcatacagtcaatgccacatgatgctcatccaatgggggttcttgtcagtgcaatgagtgctctttccgtttttcatcctgatgcaaatccagctctgagagggcaggatatatacaagtctaaacaagtgagagataaacaaatagttcggatccttggcaaggcacctacaattgctacagctgcttacttaagaatggctggcaggccacctgtccttccatccaacaatctctcatatgcggagaacttcttgtacatgctagattcattaggtaataggtcttacaaacccaatcctcgacttgctcgtgtgctcgatattcttttcatattacatgcagaacatgagatgaattgctctacagctgcggcacgtcatcttgcttcaagtggggttgatgtatacacagcaatagcaggagctgtgggagctttgtatggccctctccatgggggtgccaatgaggctgtgctgaaaatgctcagtgagattggaagtgttgaaaatattccagagttccttgagggtgtcaagaacaggaaacgaaagatgtctggttttgggcaccgtgtctacaaaaactatgatcccagagcaaaagtcatcaagacgctggccgatgaagtattttctattgtgggtcgtgatcctttaattgaggttgctgttgctctggaaaaagctgcactctcagatgagtactttgtaaaacggaagctgtatccaaacgttgatttctactctggtttaatttacagggcaatgggatttccaacagaattctttcctgtcttgtttgcaattcctcggatggccggttacttgtctcattggaatgagtcccttgatgatcctgataccaagattatgagacccgcacaggtgtatactggtgtatggatgcgtcactatatgcctctcaaagaacgatcaccacattccgaagcagacaagctcggtcacgtctccgtctccaacgccaccaaacgacgattggctggttcaggggcctgaggcttccttcaaggttcactcatatttaatataagaaaaataaatgatggtatttttttttcttctctatgaggattaaacttgtctagattctcacatactcaaaagcagatgtattcggatgaagttttatttctccgtttctaaaaataacttagtaaacttttagggtgtcctagtcctacaatgatgcggagtgtacctaattatagtaacttttaaacttaaaactagtccttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="5286" stop="13221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5586" g_stop="6012" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6013" i_stop="6804" i_length="792">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6805" g_stop="6985" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="608" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6986" i_stop="7371" i_length="386">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7372" g_stop="7457" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="694" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7458" i_stop="8251" i_length="794">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8252" g_stop="8356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="799" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8357" i_stop="9539" i_length="1183">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9540" g_stop="9602" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="862" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9603" i_stop="9710" i_length="108">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9711" g_stop="9820" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="972" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9821" i_stop="10056" i_length="236">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10057" g_stop="10176" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1092" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10177" i_stop="10246" i_length="70">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10247" g_stop="10322" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1093" r_stop="1168" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10323" i_stop="10454" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="10455" g_stop="10528" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1242" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10529" i_stop="10619" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10620" g_stop="10740" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1243" r_stop="1363" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10741" i_stop="12082" i_length="1342">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="12083" g_stop="12180" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1364" r_stop="1461" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="12181" i_stop="12259" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="12260" g_stop="12383" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1585" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="12384" i_stop="12546" i_length="163">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="12547" g_stop="12921" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1586" r_stop="1960" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U578446" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1960</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5586" e_stop="6012"/>
          <exon e_start="6805" e_stop="6985"/>
          <exon e_start="7372" e_stop="7457"/>
          <exon e_start="8252" e_stop="8356"/>
          <exon e_start="9540" e_stop="9602"/>
          <exon e_start="9711" e_stop="9820"/>
          <exon e_start="10057" e_stop="10176"/>
          <exon e_start="10247" e_stop="10322"/>
          <exon e_start="10455" e_stop="10528"/>
          <exon e_start="10620" e_stop="10740"/>
          <exon e_start="12083" e_stop="12180"/>
          <exon e_start="12260" e_stop="12383"/>
          <exon e_start="12547" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCCAGTAATTCACCACAAATTACTAATCAATGTTGAATTTGCAGAAAACAAAGATCAATAAATTCACACAAATATAAATAAACAACGAAACACAAAATCAAATTCATTTCTATTTTCTAAAATCAAACATAGAAAAAAAATTAAAAATTCTAAGAAAAAGCATTTTCATGGAGAACGGAAATTCTTCATCAGTTGCTCGAGGGAGATTAGCGGTGCTTTCAGCTCATCTCGCAGCATCACTCAACGTTTCCGATTTAACAACCTTTAAACTTCTAGAAACTTCCGGTGTATCTTCCGTTTCCGGCGTCGAACCTCCGCGGAATCTAAAAGGTGCGTTGACGATCATCGATGAACGGACCGGTAAGAAGTATCCGGTTCAGGTTTCTGAGGATGGCACTATCAAAGCCAACGACTTGAAGAAGGTAAATCATTAAATTCTGAATCTCCGGATGTGCTTTTCTTCCATTTGAATTTTGATCTCCGTTTATGATTTCTATAGCTAATACTATTGACTGTGCTAGCTCAAGTAAAATATTTCGTGTTTTTTTTTTAAAATTCAAACTCGGTTATGCTTTACGTTGGCAGTGTGATTGTGTACCTGTAGGTTGAGACAGATCTAGAATTTTAAACCGGTGCATGTATAATTTGATACACATAAATGTTTTTTAGATTATTTTTAATGACATATATAGTTAGAATGCGAGGGAATGGCTTTATGATGTATCTATATCTGCCTAGAGGCATATGCACAATAGAATAGTATGTAATTGTTTTAGGAGTGGGGATCCTGTAGACTAATTGCGAGTGAGGTGCGCGGTAGAGAAGGGAGTTTTTCTTGTTGTAATCTTCGAAATTCGGGCACAGTTACTCAGTGGATGTTATTTGTGGTTGTTTAATGATCTATGCTACTCCCTCCATTCCTTTTTAGTTGTCATGTTGCGTTTTTCAAGTGTCAATTTGACTAATTTATTACATTAATATGTAGAATAAAGTTTACTTATTCAAAAAATATATGAAAAGTACTACAAATTGCAATCTTGTCCATATCAATAATATGAAAAAATATATCTTTAGTCAAAGTTCATATTGGTTGACTCTCAAAGCGGAAACTATGACAACTAAAAAGGAACAGAGAGAGTAATTTGTTATGCTTGTCTGTTGCTTTGTTCTTTTCCTGAAAATGTTTGTTAATTTTTGGTATAATTGTTTTGCAGATAACAACAGGACAGAATGATAAGGGTCTTAAGCTTTATGATCCAGGCTATCTCAACACGGCACCTGTTAGGTCATCAATATGTTATATTGATGGTGATGCCGGGATCCTTAGATATCGAGGCTACCCTATTGAAGAGCTGGCCGAGGGAAGTTCCTTCTTGGAAGTGGCATATCTTTTGTGTAAGTGTTTCTAATGATAATTTTGTATATATTTAAATTTCTACTTTGCTGGCAGATTCATCTTTATGGTGTGTGTCTAGAGTGATTTCTATGTGGAGTATACCATCTCGGAAATTTGTCAAAAGGTGTTTTCTGATATTATATGAAAAATAAGCACAATAGATTTTTACTCAAACCTGTAACATTTGAATATAATTAAGATCATATTGGAATGGAAGGCAGTAAAAGAATTGAAAACTCCTTTCTTTTATTAATGCTGAGAAAGTTGATGTCCCTCCCCCCACCCCTCCAACCAAAACAAGTAGATGAAATGGAAAACTATGTTGCTCCATACATCTAACTTCTTTGCTGGTTAAACTTTTCATTTGTGTTTATTGAAATTTCAGTGTATGGTAATTTACCATCTGAGAATCAGTTAGCAGACTGGGAGTTCACAGTTTCACAGCATTCAGCAGTTCCACAAGGACTCTTGGTGAGCTCATATTTTAGTTTTTTAAGAAAGCTTCAGTTAGTTTTTATTCAGATTCGTCACCCGCTAATGCTTCCCATGATTTAGGAAAGATGAAAAGCTTTGAATTTTACTTAAATGCTGAACTTATGGTGTCTCTTTACTTATTCGGCATTGTCTGCACTTTTTCTCCTCTCTCAAGAAGTTTATGGTCTTGGCATATTATGAAACCTCTGTAACACCATTGGCATTTCATAAATGTTTGGTTGCTCACCACATTGCCAAATTGGTCTCTGAGAAGACAGAACAGTACACTAATGAGAATAAGGAAGCCTTTTCCCTGTAGGTAGTAACTGCTGCAATCTTTACCAAGACGGAGGAGATGCTGATGCCATATAAAAAGAGAGAAGAGAAAAGAAGTTTGTATTATTGGTTGTAAACAATATACATGAAAGATCCTCATATAGGAGTATAATACAGTTTAGCCCACATAATATAAGGAAAGTTCCCTGATAACAAGAATCCATTATTTTGGACACAACTTTAAGAACACTCCATAGTATCACCCAGACAAATTTTTCCAAGTAACTGCACTAATCCTCTTAGCTTTAAGTGATAACGCACTTCACTTGTAGAAGGATAATGATAGTGCAAGGGGAGGATGCTTCTTTGTATATAGTGATGCCAGTTGTCTAATTATGGTCTTTTAAGGCTGTACGCAGTCGTTTAAACAATTGTTCAATCCTTTTTTGTAGTTTATGTGGTTGAGTGTTGAGTTCCTGCTTTAATTTCTGAACAATTGAAATTTTGTGTTGCAGGATATCATACAGTCAATGCCACATGATGCTCATCCAATGGGGGTTCTTGTCAGTGCAATGAGTGCTCTTTCCGTTTTTCATCCTGATGCAAATCCAGCTCTGAGAGTAAGAAACATTTTCATTTTTTCCATCTTCTGTACTTCTCTCTTTTTGCTATGATGCATCACATGAGGAACGGTTTGAGAGATATATCTTCTGTAGTCAAAGTTCCTATGTTTTACCTATATATCATTGCTTCAGATGCCCCCTCATCTCATTTTGATTCCCTGAAATAAACGTAGCTTCTCTTTTCCAATTAAGGGATACTGCTTTATCATTGTCTTACCACCGATAAGACTACTAGCTTCTAAATTTTTAGAGAGTTCATTGTTGGTTTTCAGTGATGATTCTGTAGATTTGTCTAGGTTTCTCTCCGAGATCTGAAAATAATGTGAATTATAACCTGAAAGTTAGCTTCTAATTATGCACTGAAAGTGGAATAAAGATTTCAATGAAACAATATCATTGCCACCTTGAAATGTTTAAAAAATTAAAAATTTGTTTTCATATATTTTCTGAAGAAGTGTGTTTTATTTCTTGTCCATAGTTTTCTTTTGAGGGATATGGGTGCAGTCATTCAACTAAACCCTCTTATCTGTTCAAATTCCATACTGTAGTTTAGGTTGCTCTCTGTTGTCCCTACCTAAAGGTCCTTTGTAGTTGGCAAGAGGGTGGTATCTGTTAGAGCTACTAGTGTTGCTCACTTCATGGCTGTTAGAATCTGGGAACTTATCCTAACTCTTTTTTCTTATTTCATTCTGCAAATGGAAAATAAACTATTTGTACGCACATAGCTCAAGTTGGATAAGTTAAATAGTTCAGATGAAAATCTTAAGGGCAATCTCTATGGGGAAGGACAAGTATCTCTTACACAAAGTTGAACAGTTATATATCTTTCCTGGCCCCCTTCCCCTCGTTGGATCACTGCTTAGCTTCTTTTATAAGTTAAAGAAGTCTTTCCTGGAGTACAACATAAATTGCTCCTCTTGTCCTTCTCACTGGTCCATGTCAAAAAATAATTGTTAAAGGCCCTTTCTGAACTCTTTATTTGGTTCATTAAGTGGCCAAGATTCTCAGCTAAGGGTCGAGAGAGAATAAATTGATTCGCCTTCCGAAGTAGAGCAATGATAACTCTTGTTCAGTGTTCTCCCCTTGTTTGACCGACTTTAATGGTTATTCGCCATCAGGCTTTTGGATTATAACATTATATTTTTCATGATTCTGATCATTTGTATATTTGTTCACTCAGGGGCAGGATATATACAAGTCTAAACAAGTGAGAGATAAACAAATAGTTCGGATCCTTGGCAAGGTTATTTTCCTTTTATTCAAACTTTTCTTTTGATTTCCTAAAACCTTCTAAGAGTTTTGAACTATATGGTATCCAGTGGTAATAAGCATTTATTTGTTGTATTTGCAGGCACCTACAATTGCTACAGCTGCTTACTTAAGAATGGCTGGCAGGCCACCTGTCCTTCCATCCAACAATCTCTCATATGCGGAGAACTTCTTGTACATGCTAGATTCATTGTATGTTCTATTTCTCTACTTTGCTTTATTTTGTATGTGAAGTTCAGAGTGATCCCTAAAAAGGATAGAGGTAGCGATCCTGGTTCTTATTAGCCGTGGCATCGTTGTATATACTGTGGCTTATCATAAAAATCAACATTTCTGTGCACTATTTTGAATCTTGTTACATTTGCATCACATTCAGCTTCAATTCTTCATACCCAGCAAATGAAAAGCTTTTTTACTTAAACTTGCAGAGGTAATAGGTCTTACAAACCCAATCCTCGACTTGCTCGTGTGCTCGATATTCTTTTCATATTACATGCAGAACATGAGATGAATTGCTCTACAGCTGCGGCACGTCATCTTGCTTCAAGGTAGCCATCTTTGTTGCACAGACAATAGCACTAAGATTTACTTGACTTATACACCAATGGTTGTGTGCAGTGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGAGCTTTGTATGGCCCTCTCCATGGGGGTGCCAATGAGGTAAAATGTTGCTATAGCAAGTAATGAGTATATAGAGGAGCTTCATCTTTTATGAGCTCTCTATGTTTATGTCTCTCAGATAACATTGCCTGGTGTTATATTATGCTTGATAATGATGTACATGGTTTACAGGCTGTGCTGAAAATGCTCAGTGAGATTGGAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAGGTGCTTATTTTCTGATAATTATTATTGTAAAGTCCAGGATTATCTAATTCATTTTTGACCATTTGAGTTCCTTGTACCTCTAATTCTTCAGGAAACGAAAGATGTCTGGTTTTGGGCACCGTGTCTACAAAAACTATGATCCCAGAGCAAAAGTCATCAAGACGCTGGCCGATGAAGTATTTTCTATTGTGGGTCGTGATCCTTTAATTGAGGTAAGGTGTCTCTGCTGCTAAAAGGATTGTATTTTCCTTGGTCCATCTAGTGTTCCCAAAAGACACGTTCCATTTAAATAATTTTGTCCAGCATTCTAGAAGAAACAGGATATTTAGCATGCATGTTTAAGCTATCCTCATGGACTTCCATATTTTCTTGAATTTCAGAAAGAACCTAAAACATTAAAATTGGTGCTAAAACTAATATAGTGGAGTTTGTTTCAAGAACAGTTGAAACTTTTTTTTTCCTGGAAAATCTTTTCTAGGTTATGCAAAGGTTTAGGAAAAAAGTCGATTTTTCTCTCAACCAGATACCACTAGAAAATAGTTTTTGATTTAAACGTTGAAAGGAATTCCGGAAGTGTTCTGCAATAACTGAATTTTCTCTAATGGTGTTTGACTGAAAAGCTTTTTGTGGAAATTGGAAAAGTTTTTTCTATTTTGAAAAGAATGTCAATTCGTTTTGCAAATAAGCGCGCAATTATTTCAGCAGTATGGCCAGAAGAAACAAGTTTAAGAAAGCTAACTACTCTCAGTTTGTTGCATTTATGCTTAAAATACAATATGTGCACTGCATACTTGATAGTTGGGCTTGGTATCCAATAAGGTTATACCCTCAGATGTTGTTTTAGTTCAGTTTCATAAAAAGCTGATAAACTGAATATCAGTTGTTTAAGCTAAATCACAATTACAACAGTAATACACCTTCTCCCAGTACGTTCTTCTATGTTTACCTTTAAACAAGCCCAGTAAAATCGTTTCTTCTTGGTTCCACGGTTATTTGAAAGCAGCATCACTTTTTCTTTGTTGTTCAAAAAGCCATCAAGCTTCCTCCCCTACTATTTATGCATCCATATGAAGTCTTTGTTCTTCCTTTTTCGGCAATTTTCAAATTAACAAGAATCAGATCTTCTAAGGTAGCTAAAATTATTTCTCTGGGGTTCTCCACTGTTGATTTAACTGGACCATCTCCTTTATTTTTTTAATGTCGGAGATTCAAGCACATTGGGTATTGAGTACATCTCTATCCTACAATGGCATCGAGTGTGCCTGTAAGCACTAGTTACTATGTGGAAGAGGTGGTAGAATCTCATTTCTCTGAAATATGAAATTTATGTCATAATTGAGAGAAATGCCTTCACAGAAGATGAGATAGGCTACAAGTATTGTGGTAGGTAACACAGTCATAGCGCATTCGATGCCACCATCCAGATTTACTGTATCTGGCATGCTGGTTATATCTATGCAACTATATTTCCTCGCATGAATGTAATGATGGGATATGGACTACTTCCGCTCAATGATCCAATATGATTCTCACATTCTTTCATACTACGTTCAGGTTGCTGTTGCTCTGGAAAAAGCTGCACTCTCAGATGAGTACTTTGTAAAACGGAAGCTGTATCCAAACGTTGATTTCTACTCTGGTTTAATTTACAGGTAAGCATAAAAACTAAAATGTATCTTTTCATTATCAAGAATGATAACTCTAATGAATAATTACTTTTTTATGAATTAGGGCAATGGGATTTCCAACAGAATTCTTTCCTGTCTTGTTTGCAATTCCTCGGATGGCCGGTTACTTGTCTCATTGGAATGAGTCCCTTGATGATCCTGATACCAAGATTATGAGACCCGCACAGGTAAAATCACTGTCAATCTCGGTTGTGCTCGTGCCCGACTGTGTCTGCATCTGAACATAGAACCTAATGAATTTTTAGGGACAAAAAATGTTTTGGTTACTTTACTGGAGTCTACTTATATCCCTGAGCTAAGTCGATCGTCTTAAAAACTTCCGCCTTTCAGGTGTATACTGGTGTATGGATGCGTCACTATATGCCTCTCAAAGAACGATCACCACATTCCGAAGCAGACAAGCTCGGTCACGTCTCCGTCTCCAACGCCACCAAACGACGATTGGCTGGTTCAGGGGCCTGAGGCTTCCTTCAAGGTTCACTCATATTTAATATAAGAAAAATAAATGATGGTATTTTTTTTTCTTCTCTATGAGGATTAAACTTGTCTAGATTCTCACATACTCAAAAGCAGATGTATTCGGATGAAGTTTTATTTCTCCGTTTCTAAAAATAACTTAGTAAACTTTTAGTGTGTCCTAGTCCTACAATGATGCGGAGTGTACCTAATTATAGTAACTTTTAAACTTAAAACTAGTCCTTATAT</genome_strand>
        <mrna_strand>ATTTTCCCAGTAATTCACCACAAATTACTAATCAATGTTGAATTTGCAGAAAACAAAGATCAATAAATTCACACAAATATAAATAAACAACGAAACACAAAATCAAATTCATTTCTATTTTCTAAAATCAAACATAGAAAAAAAATTAAAAATTCTAAGAAAAAGCATTTTCATGGAGAACGGAAATTCTTCATCAGTTGCTCGAGGGAGATTAGCGGTGCTTTCAGCTCATCTCGCAGCATCACTCAACGTTTCCGATTTAACAACCTTTAAACTTCTAGAAACTTCCGGTGTATCTTCCGTTTCCGGCGTCGAACCTCCGCGGAATCTAAAAGGTGCGTTGACGATCATCGATGAACGGACCGGTAAGAAGTATCCGGTTCAGGTTTCTGAGGATGGCACTATCAAAGCCAACGACTTGAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAACAGGACAGAATGATAAGGGTCTTAAGCTTTATGATCCAGGCTATCTCAACACGGCACCTGTTAGGTCATCAATATGTTATATTGATGGTGATGCCGGGATCCTTAGATATCGAGGCTACCCTATTGAAGAGCTGGCCGAGGGAAGTTCCTTCTTGGAAGTGGCATATCTTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAATCAGTTAGCAGACTGGGAGTTCACAGTTTCACAGCATTCAGCAGTTCCACAAGGACTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCACATGATGCTCATCCAATGGGGGTTCTTGTCAGTGCAATGAGTGCTCTTTCCGTTTTTCATCCTGATGCAAATCCAGCTCTGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAGGATATATACAAGTCTAAACAAGTGAGAGATAAACAAATAGTTCGGATCCTTGGCAAG............................................................................................................GCACCTACAATTGCTACAGCTGCTTACTTAAGAATGGCTGGCAGGCCACCTGTCCTTCCATCCAACAATCTCTCATATGCGGAGAACTTCTTGTACATGCTAGATTCATT............................................................................................................................................................................................................................................AGGTAATAGGTCTTACAAACCCAATCCTCGACTTGCTCGTGTGCTCGATATTCTTTTCATATTACATGCAGAACATGAGATGAATTGCTCTACAGCTGCGGCACGTCATCTTGCTTCAAG......................................................................TGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGAGCTTTGTATGGCCCTCTCCATGGGGGTGCCAATGAG....................................................................................................................................GCTGTGCTGAAAATGCTCAGTGAGATTGGAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAG...........................................................................................GAAACGAAAGATGTCTGGTTTTGGGCACCGTGTCTACAAAAACTATGATCCCAGAGCAAAAGTCATCAAGACGCTGGCCGATGAAGTATTTTCTATTGTGGGTCGTGATCCTTTAATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTGGAAAAAGCTGCACTCTCAGATGAGTACTTTGTAAAACGGAAGCTGTATCCAAACGTTGATTTCTACTCTGGTTTAATTTACAG...............................................................................GGCAATGGGATTTCCAACAGAATTCTTTCCTGTCTTGTTTGCAATTCCTCGGATGGCCGGTTACTTGTCTCATTGGAATGAGTCCCTTGATGATCCTGATACCAAGATTATGAGACCCGCACAG...................................................................................................................................................................GTGTATACTGGTGTATGGATGCGTCACTATATGCCTCTCAAAGAACGATCACCACATTCCGAAGCAGACAAGCTCGGTCACGTCTCCGTCTCCAACGCCACCAAACGACGATTGGCTGGTTCAGGGGCCTGAGGCTTCCTTCAAGGTTCACTCATATTTAATATAAGAAAAATAAATGATGGTATTTTTTTTTCTTCTCTATGAGGATTAAACTTGTCTAGATTCTCACATACTCAAAAGCAGATGTATTCGGATGAAGTTTTATTTCTCCGTTTCTAAAAATAACTTAGTAAACTTTTAGGGTGTCCTAGTCCTACAATGATGCGGAGTGTACCTAATTATAGTAACTTTTAAACTTAAAACTAGTCCTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593681" ref_strand="+" ref_description="SGN-U593681 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15228003|ref|NP_181807.1| (e_value=8e-32) citrate synthase -related [Arabidopsis thaliana]; (*ATH) AT2G42790.1 (e_value=4e-34)  Symbol: None | citrate synthase, glyoxysomal, putative, strong similarity to SP:P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase | chr2:17809933-17813126 REVERSE | Aliases: F7D19.21, ... ; (*SWP) sp|Q9SJH7|CISY3_ARATH (e_value=4e-33) Citrate synthase 3, peroxisomal OS=Arabidopsis thaliana GN=CSY3; ">
      <seq>gaattgctctacagctgcggcacgtcatctggcttcaagtggggttgatgtatacacagcaatagcacgagctgagggagctgtgtatggccctctccatgggggtgccaatgaggctgagctgaaaatgctcagcgagattggaagtgttgaaaatataccagagttccttgagggtgacacgaacaggaaacgaaagatgtctgggttagggcacccagtatacaaaaactatagatcccagagcaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="9838" stop="10982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10138" g_stop="10176" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10177" i_stop="10246" i_length="70">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10247" g_stop="10322" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="115" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10323" i_stop="10454" i_length="132">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10455" g_stop="10528" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="189" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10529" i_stop="10619" i_length="91">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10620" g_stop="10682" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="253" r_length="64" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U593681" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10138" e_stop="10176"/>
          <exon e_start="10247" e_stop="10322"/>
          <exon e_start="10455" e_stop="10528"/>
          <exon e_start="10620" e_stop="10682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTCTACAGCTGCGGCACGTCATCTTGCTTCAAGGTAGCCATCTTTGTTGCACAGACAATAGCACTAAGATTTACTTGACTTATACACCAATGGTTGTGTGCAGTGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGAGCTTTGTATGGCCCTCTCCATGGGGGTGCCAATGAGGTAAAATGTTGCTATAGCAAGTAATGAGTATATAGAGGAGCTTCATCTTTTATGAGCTCTCTATGTTTATGTCTCTCAGATAACATTGCCTGGTGTTATATTATGCTTGATAATGATGTACATGGTTTACAGGCTGTGCTGAAAATGCTCAGTGAGATTGGAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAGGTGCTTATTTTCTGATAATTATTATTGTAAAGTCCAGGATTATCTAATTCATTTTTGACCATTTGAGTTCCTTGTACCTCTAATTCTTCAGGAAACGAAAGATGTCTGGTTTTGGGCACCGTGTCTACAAAAACTAT-GATCCCAGAGCAAAAGT</genome_strand>
        <mrna_strand>GAATTGCTCTACAGCTGCGGCACGTCATCTGGCTTCAAG......................................................................TGGGGTTGATGTATACACAGCAATAGCACGAGCTGAGGGAGCTGTGTATGGCCCTCTCCATGGGGGTGCCAATGAG....................................................................................................................................GCTGAGCTGAAAATGCTCAGCGAGATTGGAAGTGTTGAAAATATACCAGAGTTCCTTGAGGGTGACACGAACAG...........................................................................................GAAACGAAAGATGTCTGGGTTAGGGCACCCAGTATACAAAAACTATAGATCCCAGAGCAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U563672" ref_strand="+" ref_description="SGN-U563672 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|215704227|dbj|BAG93067.1| (e_value=2e-59) unnamed; (*ATH) AT1G06470.1 (e_value=2e-58)  Symbol: None | phosphate translocator-related, low similarity to SP:P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor (Mesembryan... ; (*SWP) sp|Q10354|YDB1_SCHPO (e_value=6e-13) Uncharacterized transporter C22E12.01 OS=Schizosaccharomyces pombe GN=SPAC22E12.01; ">
      <seq>cacgttttgtttccccatatccacctggttgtgctgaacataaaactgtcataaagaaagaagcctatggtaaggactttgaacaactcttattatcatcatcatttttattagaagtcgaagcagcagcggttgcactactacatagattacgtcaaatctgatcttcttttaaaagggtagttctatgcatgaagcatttcccgttcatagtttgtgaataaatcgtgtaatgaaatacatgctttggttattgcaggtttaaaaaatccactcacactaatgagctatgttactccagtaatgactctttcaactgctgtgttgtcccttatgtttgatccgtggcacgaattcagacacaccaattactttgatacgtcatggcatatagctagaagttgtttgttgatgctttttggcggaactttggctttctttatggtgttgacggaatatattcttgtgtctatcacaagtgcagtaacagtgacaatagcgggagttgtaaaggaggcagtcactatcttggttgctgtattttattttcacgacgactttacctggatgaaagggcttggcctcatgacgataatgtttggtgtcagtttgtttaactggtacaagtatgacaaaatacataacaaaggtagcacaagtgaagatgaaagtggatcagcattaggaaatgcagctaccaagtatgttatacttgaagaaatggaagatcaagaccatggtccttgaagttttacatatgacattctaactacgatgcactctcatcgcccttttggattcgcaacggaaggaaggggacgaaaaaatacgcagattttctagcaaatgaaggtaaataatcgtatacatgaaaaagatttgttgatgaagcaagatgagttttttttcactggtgaactttaagacatgttacttatagaagggaaatatattactttctatgtgcttaaaaaaaataatgatatacatttttatatatataggggtgtgcgtttggtatttggttcgatattttcaaatttcgaatttgtaattcgccaattgatggttaaaaatcaattatcgaactttttaaagtttgataatcgataaatcaaattttggttcaatacgatatttagtaatatcacatggaatggaagttatagtctattgtataacaaagttaattattgttacttcaatcttattggtttttaaatataaagacatgatataataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="19055" stop="21996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19350" g_stop="19794" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19795" i_stop="19956" i_length="162">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19957" g_stop="20043" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="531" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20044" i_stop="20235" i_length="192">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20236" g_stop="20330" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="626" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20331" i_stop="20612" i_length="282">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20613" g_stop="20953" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="970" r_length="344" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20954" i_stop="21424" i_length="471">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21425" g_stop="21701" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1257" r_length="287" r_score="0.819"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U563672" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19350" e_stop="19794"/>
          <exon e_start="19957" e_stop="20043"/>
          <exon e_start="20236" e_stop="20330"/>
          <exon e_start="20613" e_stop="20953"/>
          <exon e_start="21425" e_stop="21701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTGTTTTCCCATATCCACCTGGTTGTGCTGAACATAAAACTGGCATAAAGAAAGAAGCCTATGGTAAGGACTTTGAACAACTCTTATTATCATCGTCATTTTAATTAGCAGTCGAAGCAGCAGCGACTGCAATACTACATAGATTATGTCAAATCTGATCTTCTTTTAAAAGGGGTTGTTCTATGCATGAAGCATTTCCCGTTCATAGTTTGTGAATAAATCGTGTAATGAAATACATGCTTTGGTTATTGCAGGTTTAAAAAATCCACTCACACTAATGAGCTATGTTACTCCAGTAATGACTCTTTCAACTGCTGTGTTGTCCCTTATGTTTGATCCGTGGCACGAATTCAGACACACCAATTACTTTGATACGTCATGGCATATAGCTAGAAGTTGTTTGTTGATGCTTTTTGGCGGAACTTTGGCTTTCTTTATGGTATGTATATATGTGTCTAAGCACTGGTATCAGTTCAATTTGTTGATTTCCCATCTCATAGTGGTTGTTTTGTTTTTCTCCTCTTCTTTTTCCGGAGAAAATGAAGCCTTCTAAGAGGCTTAGTTCGATAACTTCTTCATGCTTGCCATTTGTTTACTGCAGGTGTTGACGGAATATATTCTTGTGTCTATCACAAGTGCAGTAACAGTGACAATAGCGGGAGTTGTAAAGGAGGCAGTCACTATCTTGGTACGTTGTATAAACCTTGTAGGTTCAACCTTTAGATGGTCATAACGAACGTTGGGTTGTACAACTACCAGCGGAGGCCAAGTTAAAATGTCTATTTACGTATTGTGTCAATTCAATTCTATGCATTTGGAGTCCATGTTTTCTACAATTTGTGAAATAGCTTGTAATCGTGTAATTTGCTGCCCTGTTCAGGTTGCTGTATTTTATTTTCACGACGACTTTACCTGGATGAAAGGGCTTGGTCTCGTGACGATAATGTTTGGTGTCAGTTTGTTCAACTGGTACAAGTAAGTAACTGAATCCTTCATGTTCTAGCAAGAAGTTATCTCGTAACGTCTTGTTCTGCACTCACATTAAAATTAGATTACTGAACACAATGTGTGTGTATTCTGTTTATGATCTTCAGTGAGCTAGTAGACACCTAAACTTTAAGAGTACGCATCTAGACACCTCAACTCGTACCCATGAGGTCTCGTGGACACCTGACATTGCCATGACACATAAATTTTAGAGGTGTTTATATATGTTGATCCTTTTTTAAGTCGTAATTCTTCATTTTCGTTACTCAGGTATGACAAAATACATAACAAAGGTAGCACAAGTGAAGATGAAAGTGGATCAGCATTAGGAAATGCAGCTACCAAGTATGTTATACTTGAAGAAATGGAAGATCAAGACCATGGTCCTTGAAGTTTTTCATATGACATTCTAACGACGATGCACTCTCATCG-CCTTTTGTATTCGCAACGGAAGGAAGGGGACGAAAAAATACGCAGATTTTCTAGCAAATGAAGGT---CAATCGTATACATGAAAAAGATTTGTTGATGAAGGAAGATGAGTTTTTTTTTCACTGGTGAACTTTAAGACATGTTACTTATAGAAGGGAAATATATTACTTTCTCTCTGCTAAAAGAACGGCCAAATACATAAACAGATCTTTAAACTTGTTGGATTTTTTCCCCTCATTTTTCTATTAATCATTGAACCACACATAGTTTGTTCCTTTAAAATACTGTTGGTTGATTTTGATCTGTTTTTCTATTGTAAAGGCCTTCAATTGTGTTCGACTTATAATAATTTTGATTAAATGAATGAAGACAAATCGTGTTAGTCTCATTTGTTTTCTAATGTGTTCAAATGACTTAAGTAAAACAAAATTATTCTCGAACATTTTCACTATCAATTGGACTAATGAGTTATGGAATAACATATGTATCCTCTATCAATGCCTCTCACAATTCTGGTTTCACATCAGACAACGGTGTTTATTTAAACGGAATAAATTATGGGGTTTCAATGATTTAATAGGAAAATGACGTAGTTAAAGTATCTGAGGGGAAAAAATCCAACAAGTTCAGAGATCTGCTTATGTATTTGGCCTAAAAAAATAATGATATAC--TTTT-T-TATATAGGGGTGTGCGTTTGGTATTCGGTTCGATATTTTCAAATTTCAAATTTATAATTTAATAATTGATAATTAAAAATCAATTATCGAACTTTTTAAAATTCTTATAATTAATAAATCAAA---T--TTCAATATGATATTTAGTAATATCACATGGAATGGAAGTTGTAGTCTATTGTATAACAAAGTTAA-TATTGTTACTTCAATCGT-TTTTTTTAAAAATATAAAGACATGATATAATAGAAAATCAAACTGGA</genome_strand>
        <mrna_strand>CACGTTTTGTTTCCCCATATCCACCTGGTTGTGCTGAACATAAAACTGTCATAAAGAAAGAAGCCTATGGTAAGGACTTTGAACAACTCTTATTATCATCATCATTTTTATTAGAAGTCGAAGCAGCAGCGGTTGCACTACTACATAGATTACGTCAAATCTGATCTTCTTTTAAAA-GGGTAGTTCTATGCATGAAGCATTTCCCGTTCATAGTTTGTGAATAAATCGTGTAATGAAATACATGCTTTGGTTATTGCAGGTTTAAAAAATCCACTCACACTAATGAGCTATGTTACTCCAGTAATGACTCTTTCAACTGCTGTGTTGTCCCTTATGTTTGATCCGTGGCACGAATTCAGACACACCAATTACTTTGATACGTCATGGCATATAGCTAGAAGTTGTTTGTTGATGCTTTTTGGCGGAACTTTGGCTTTCTTTATG..................................................................................................................................................................GTGTTGACGGAATATATTCTTGTGTCTATCACAAGTGCAGTAACAGTGACAATAGCGGGAGTTGTAAAGGAGGCAGTCACTATCTTG................................................................................................................................................................................................GTTGCTGTATTTTATTTTCACGACGACTTTACCTGGATGAAAGGGCTTGGCCTCATGACGATAATGTTTGGTGTCAGTTTGTTTAACTGGTACAA..........................................................................................................................................................................................................................................................................................GTATGACAAAATACATAACAAAGGTAGCACAAGTGAAGATGAAAGTGGATCAGCATTAGGAAATGCAGCTACCAAGTATGTTATACTTGAAGAAATGGAAGATCAAGACCATGGTCCTTGAAGTTTTACATATGACATTCTAACTACGATGCACTCTCATCGCCCTTTTGGATTCGCAACGGAAGGAAGGGGACGAAAAAATACGCAGATTTTCTAGCAAATGAAGGTAAATAATCGTATACATGAAAAAGATTTGTTGATGAAGCAAGATGAG-TTTTTTTTCACTGGTGAACTTTAAGACATGTTACTTATAGAAGGGAAATATATTACTTTCTATGTGCTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATAATGATATACATTTTTATATATATAGGGGTGTGCGTTTGGTATTTGGTTCGATATTTTCAAATTTCGAATTTGTAATTCGCCAATTGATGGTTAAAAATCAATTATCGAACTTTTTAAAGTT-TGATAATCGATAAATCAAATTTTGGTTCAATACGATATTTAGTAATATCACATGGAATGGAAGTTATAGTCTATTGTATAACAAAGTTAATTATTGTTACTTCAATCTTATTGGTTTTTAAATATAAAGACATGATATAATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570129" ref_strand="+" ref_description="SGN-U570129 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|197360039|gb|ACH69874.1| (e_value=2e-57) anthocyanin; (*ATH) AT3G26040.1 (e_value=2e-40)  Symbol: None | transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) | chr3:9520978-9522307 FORWARD |... ; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=4e-34) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT; ">
      <seq>atttcattgacaagctaagttttgagtacatttaaccatgaaagattcaatgcaagtgactattttgtccaaaaacctcattaaaccatcattaccaacaccaaaacaccttaaatatcacaagttatctttctttgatcaagttgctgatgtagcacacttgcctcttgttcttttctatcctcattgtaagaacaactcgaaacatgaagagcttgaagaatccttatcgaggattttatcacatgtttaccctttagctggtcgatttgctgaagatgatgaatcattaattctttgtcttgatcaaggtgttacttatatcaaagcaaaggtcaattgtacccttgatgatttacttcaacaaacaaaaaaagaccttgatctagccttgtcattttggcctcaaggtacgatggatgttgatgactctaatttgttcgtcacgccacttatggttgtgcaagtcacgacatttgaatgtggtggtctagccctagctattagcattgcacatcctgttatggacggatgcaccacattcaaaatcctttatgaatggaccaaagtgtgcaaatttggtactccttctaaggaaatcagcttcatgaatttcaatgtaggtgctcttttcccttacaagcacgatttatcaaccctccttgagcctccggttgatgaaggcaaacgcaaagactctaagttaattgcgaggaagtttgtttttgagaaagatgcaatatcgaggctcagagagaaatttgattccataagtgaaagtttaggttttaaaccttctcgagttgagatgattacagcacttttatggaggtcacttatccgttccacgaaaagtgcaaaattgaaacgttctgtaatgtcatttccacttaacttgcgcggtaaggtagcagattttcctgaaattacagactcctttgggaatcttattattgaagttcctataaaatttgagcacgatgatgaaacgaaaatagagtcgctgcatcagatcgtaaaactcataaaagagtctgttaaagtgattaacaataaatgcgtcaaagctactccagatgaaataatttctttggttatcgacttatacaaggatagttactctggattagaatggggaggagacgatgaagttatgaattttacgagctcaagtttatctaggttccccatacaaaaaacagattttggttggggaaaacctagtttaatgcattttgggtcaagacataatcaagttttgtggttatatgatactgaatgtgagactggaattgttgtgcaaatggatttggagaaaaaacacatggataaacttgtgtgtgaccaagatatcatcgattttgcaaaattttaggggtttaatttcaacctgttttcatttaaattttactccatttgttttaatttacctacctaccatgtgttgtccttttggtttgttctttttatatatatgaatgtgactctaccagtagttttttaaagacttactaaatgaaataaataatgtaatatgtcaataattaagtgttggaaatgagctcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="26660" stop="28828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26960" g_stop="28528" g_length="1569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1569" r_length="1569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U570129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26960" e_stop="28528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTGACAAGCTAAGTTTTGAGTACATTTAACCATGAAAGATTCAATGCAAGTGACTATTTTGTCCAAAAACCTCATTAAACCATCATTACCAACACCAAAACACCTTAAATATCACAAGTTATCTTTCTTTGATCAAGTTGCTGATGTAGCACACTTGCCTCTTGTTCTTTTCTATCCTCATTGTAAGAACAACTCGAAACATGAAGAGCTTGAAGAATCCTTATCGAGGATTTTATCACATGTTTACCCTTTAGCTGGTCGATTTGCTGAAGATGATGAATCATTAATTCTTTGTCTTGATCAAGGTGTTACTTATATCAAAGCAAAGGTCAATTGTACCCTTGATGATTTACTTCAACAAACAAAAAAAGACCTTGATCTAGCCTTGTCATTTTGGCCTCAAGGTACGATGGATGTTGATGACTCTAATTTGTTCGTCACGCCACTTATGGTTGTGCAAGTCACGACATTTGAATGTGGTGGTCTAGCCCTAGCTATTAGCATTGCACATCCTGTTATGGACGGATGCACCACATTCAAAATCCTTTATGAATGGACCAAAGTGTGCAAATTTGGTACTCCTTCTAAGGAAATCAGCTTCATGAATTTCAATGTAGGTGCTCTTTTCCCTTACAAGCACGATTTATCAACCCTCCTTGAGCCTCCGGTTGATGAAGGCAAACGCAAAGACTCTAAGTTAATTGCGAGGAAGTTTGTTTTTGAGAAAGATGCAATATCGAGGCTCAGAGAGAAATTTGATTCCATAAGTGAAAGTTTAGGTTTTAAACCTTCTCGAGTTGAGATGATTACAGCACTTTTATGGAGGTCACTTATCCGTTCCACGAAAAGTGCAAAATTGAAACGTTCTGTAATGTCATTTCCACTTAACTTGCGCGGTAAGGTAGCAGATTTTCCTGAAATTACAGACTCCTTTGGGAATCTTATTATTGAAGTTCCTATAAAATTTGAGCACGATGATGAAACGAAAATAGAGTCGCTGCATCAGATCGTAAAACTCATAAAAGAGTCTGTTAAAGTGATTAACAATAAATGCGTCAAAGCTACTCCAGATGAAATAATTTCTTTGGTTATCGACTTATACAAGGATAGTTACTCTGGATTAGAATGGGGAGGAGACGATGAAGTTATGAATTTTACGAGCTCAAGTTTATCTAGGTTCCCCATACAAAAAACAGATTTTGGTTGGGGAAAACCTAGTTTAATGCATTTTGGGTCAAGACATAATCAAGTTTTGTGGTTATATGATACTGAATGTGAGACTGGAATTGTTGTGCAAATGGATTTGGAGAAAAAACACATGGATAAACTTGTGTGTGACCAAGATATCATCGATTTTGCAAAATTTTAGGGGTTTAATTTCAACCTGTTTTCATTTAAATTTTACTCCATTTGTTTTAATTTACCTACCTACCATGTGTTGTCCTTTTGGTTTGTTCTTTTTATATATATGAATGTGACTCTACCAGTAGTTTTTTAAAGACTTACTAAATGAAATAAATAATGTAATATGTCAATAATTAAGTGTTGGAAATGAGCTCAAAA</genome_strand>
        <mrna_strand>ATTTCATTGACAAGCTAAGTTTTGAGTACATTTAACCATGAAAGATTCAATGCAAGTGACTATTTTGTCCAAAAACCTCATTAAACCATCATTACCAACACCAAAACACCTTAAATATCACAAGTTATCTTTCTTTGATCAAGTTGCTGATGTAGCACACTTGCCTCTTGTTCTTTTCTATCCTCATTGTAAGAACAACTCGAAACATGAAGAGCTTGAAGAATCCTTATCGAGGATTTTATCACATGTTTACCCTTTAGCTGGTCGATTTGCTGAAGATGATGAATCATTAATTCTTTGTCTTGATCAAGGTGTTACTTATATCAAAGCAAAGGTCAATTGTACCCTTGATGATTTACTTCAACAAACAAAAAAAGACCTTGATCTAGCCTTGTCATTTTGGCCTCAAGGTACGATGGATGTTGATGACTCTAATTTGTTCGTCACGCCACTTATGGTTGTGCAAGTCACGACATTTGAATGTGGTGGTCTAGCCCTAGCTATTAGCATTGCACATCCTGTTATGGACGGATGCACCACATTCAAAATCCTTTATGAATGGACCAAAGTGTGCAAATTTGGTACTCCTTCTAAGGAAATCAGCTTCATGAATTTCAATGTAGGTGCTCTTTTCCCTTACAAGCACGATTTATCAACCCTCCTTGAGCCTCCGGTTGATGAAGGCAAACGCAAAGACTCTAAGTTAATTGCGAGGAAGTTTGTTTTTGAGAAAGATGCAATATCGAGGCTCAGAGAGAAATTTGATTCCATAAGTGAAAGTTTAGGTTTTAAACCTTCTCGAGTTGAGATGATTACAGCACTTTTATGGAGGTCACTTATCCGTTCCACGAAAAGTGCAAAATTGAAACGTTCTGTAATGTCATTTCCACTTAACTTGCGCGGTAAGGTAGCAGATTTTCCTGAAATTACAGACTCCTTTGGGAATCTTATTATTGAAGTTCCTATAAAATTTGAGCACGATGATGAAACGAAAATAGAGTCGCTGCATCAGATCGTAAAACTCATAAAAGAGTCTGTTAAAGTGATTAACAATAAATGCGTCAAAGCTACTCCAGATGAAATAATTTCTTTGGTTATCGACTTATACAAGGATAGTTACTCTGGATTAGAATGGGGAGGAGACGATGAAGTTATGAATTTTACGAGCTCAAGTTTATCTAGGTTCCCCATACAAAAAACAGATTTTGGTTGGGGAAAACCTAGTTTAATGCATTTTGGGTCAAGACATAATCAAGTTTTGTGGTTATATGATACTGAATGTGAGACTGGAATTGTTGTGCAAATGGATTTGGAGAAAAAACACATGGATAAACTTGTGTGTGACCAAGATATCATCGATTTTGCAAAATTTTAGGGGTTTAATTTCAACCTGTTTTCATTTAAATTTTACTCCATTTGTTTTAATTTACCTACCTACCATGTGTTGTCCTTTTGGTTTGTTCTTTTTATATATATGAATGTGACTCTACCAGTAGTTTTTTAAAGACTTACTAAATGAAATAAATAATGTAATATGTCAATAATTAAGTGTTGGAAATGAGCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581332" ref_strand="-" ref_description="SGN-U581332 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|6692816|dbj|BAA89423.1| (e_value=8e-78) allyl alcohol dehydrogenase [Nicotiana tabacum]; (*ATH) AT5G16990.1 (e_value=2e-64)  Symbol: None | NADP-dependent oxidoreductase, putative, strong similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 (SP:Q39172)(gi:886428) and P2 (SP:Q39173)(gi:886430), Arabidopsis thaliana | chr5:5581661-5584032 REVERS... ; (*SWP) sp|Q39173|P2_ARATH (e_value=2e-63) Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2; ">
      <seq>caatttgcaaagatgttaggttgttatgttgttggtagtgctggaaataaacaaaaggtaagtactaaaacatttcattcttgaaatttgttagtgggttacaagttatcttatttatcttaatcattgttaaataatctatctatctcatttattcattattattattattaaaaggttgatatgttgaagagcaagtttggttttgatgaagcttttaactataaagaggagcatgatttagatgcaactttgaaaaggtactttcctgatggaattgacatatactttgagaatgttggaggtaagatgcttgatgcagttcttatgaatatgaaacttcatggtcgtattgctgtgtgtgggatgatttcacaatacaaccttgacaagactgaaggagtgcacaacttgttttgcctcatcgcgaaacgaattcgtatggaaggatttcttgtttttgattactatcatctttatcctaaatatttggaaatgatcattccacaaataaaggctggtaatattgtgtatgtggaagacatagctgaaggttttgaaagtgctcctggtgttctagttggtctcttctcaggtctcaatgttggaaagcaagttgtgatgatttcagaggaatgaatggatttggatccttaccaatttctcttaagtttttacttgaaaagaaagatattgtgtcatggttaaatacatagacatttttgtcatatgtttaataaattttatgacttatctatagtttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="36641" stop="38893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36941" g_stop="37200" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37201" i_stop="38085" i_length="885">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38086" g_stop="38593" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="768" r_length="508" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U581332" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36941" e_stop="37200"/>
          <exon e_start="38086" e_stop="38593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGCAAAGATGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAAATAAACAAAAGGTAAGTACTAAAACATTTCATTCTTGAAATTTGTTAGTGGGTTACAAGTTATCTTATTTATCTTAATCATTGTTAAATAATCTATCTATCTCATTTATTCATTATTATTATTATTAAAAGGTTGATATGTTGAAGAGCAAGTTTGGTTTTGATGAAGCTTTTAACTATAAAGAGGAGCATGATTTAGATGCAACTTTGAAAAGGTGAGAGTAATCTTATAAATTCCCACAAGAAAACACTAAGTAATTCTCACTTTAATGGTGTGGGGTTAGGCCTGACCCCTTATAAATTAGGCATAATACATATATTTAATTTTAAATTTAGCTTCAAATTTTAATTTTGACCTCTAATTACTTTCATAATGCACAAACAGACACTTTAACTATCCAACTTTTAAATAGATACATACATGAGTCCTACATGGCACAATACAGTAAGTCATCACGTAGGACAAAAGATGACATGTAGGTCATATGTGTCTATTTATTCAATTTTATACAAATTTAAGTGTCTACTTGTGCACATTCAAAATTGAAAGACATAAATATTGATTTGAAGCCAAGTTAAAAGGTATATTTATGTATTATGCCTATAAAATCCCACAAGAAAACACGAAGTAATGGTCACTTTAATGGCGTGGGGTTAGGCTTGATCCCTACCATGTTGATAACATCCAAAAAGTTACTAAAGTAAAAAGGACATGAACCTAACTTTTGATTGAAAACAACTAGGATAAACTATTACCGTTTGTAAAAAGACTAAAATGACATAGACATTCATACTATATGCAAAATACATTGATTCAACTAATAAAAAAAATTACATTTATCGTATCTTCTCCTTATACTGAAATTGTCATTTATATAGTAGAAATAGTCTCTTCACCTCAGAAGAATTGTGTGTGGTGGATTGACATTTTATTTTGGTTAAAGTGAATGAGATTAATGATTAATGAAGATATGAACCACTTTTGTAACATTAAAGACATATATGAAAAGATAGTTACTATAACGACAAAGATATATATGAACTGATAATATAACAGAAAAGCAATATGACCTTTTTCTCGTATTGATTTAATCTATTAGGTACTTTCCTGATGGAATTGACATATACTTTGAGAATGTTGGAGGTAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGTATTGCTGTGTGTGGGATGATTTCACAATACAACCTTGACAAGACTGAAGGAGTGCACAACTTGTTTTGCCTCATCGCGAAACGAATTCGTATGGAAGGATTTCTTGTTTTTGATTACTATCATCTTTATCCTAAATATTTGGAAATGATCATTCCACAAATAAAGGCTGGTAATATTGTGTATGTGGAAGACATAGCTGAAGGTTTTGAAAGTGCTCCTGGTGCTCTAGTTGGTCTCTTCTCAGGTCTCAATGTTGGAAAGCAAGTTGTGATGATTTCAGAGGAATGAATGGATTTGGATCCTTACCAATTTCTCTTAAGTTTTTACTTGAAAAGAAAGATATTGTGTCATGGTTAAATACATAGACATTTTTGTCATATGTTTAATAAATTTTATGATTTATCTATAGTTTGAAGT</genome_strand>
        <mrna_strand>CAATTTGCAAAGATGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAAATAAACAAAAGGTAAGTACTAAAACATTTCATTCTTGAAATTTGTTAGTGGGTTACAAGTTATCTTATTTATCTTAATCATTGTTAAATAATCTATCTATCTCATTTATTCATTATTATTATTATTAAAAGGTTGATATGTTGAAGAGCAAGTTTGGTTTTGATGAAGCTTTTAACTATAAAGAGGAGCATGATTTAGATGCAACTTTGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCCTGATGGAATTGACATATACTTTGAGAATGTTGGAGGTAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGTATTGCTGTGTGTGGGATGATTTCACAATACAACCTTGACAAGACTGAAGGAGTGCACAACTTGTTTTGCCTCATCGCGAAACGAATTCGTATGGAAGGATTTCTTGTTTTTGATTACTATCATCTTTATCCTAAATATTTGGAAATGATCATTCCACAAATAAAGGCTGGTAATATTGTGTATGTGGAAGACATAGCTGAAGGTTTTGAAAGTGCTCCTGGTGTTCTAGTTGGTCTCTTCTCAGGTCTCAATGTTGGAAAGCAAGTTGTGATGATTTCAGAGGAATGAATGGATTTGGATCCTTACCAATTTCTCTTAAGTTTTTACTTGAAAAGAAAGATATTGTGTCATGGTTAAATACATAGACATTTTTGTCATATGTTTAATAAATTTTATGACTTATCTATAGTTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580450" ref_strand="+" ref_description="SGN-U580450 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|6692816|dbj|BAA89423.1| (e_value=1e-139) allyl alcohol dehydrogenase [Nicotiana tabacum]; (*ATH) AT5G16970.1 (e_value=8e-117)  Symbol: None | NADP-dependent oxidoreductase, putative (P1), identical to probable NADP-dependent oxidoreductase P1, zeta-crystallin homolog (SP:Q39172)(gi:886428), Arabidopsis thaliana; similar to allyl alcohol dehydrogenase (Nicotiana tabacum) GI:... ; (*SWP) sp|Q39172|P1_ARATH (e_value=7e-116) Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1; ">
      <seq>ggcgattggcggccaatcggccgaattcccatggggatccgatggattcacataaattgaagtgtgaaatggctgaagaaatgatcatgaacaacaaacaaatcattctaaaacattatgtggaaggttaccctaaggaatctgatttggaatttaagaataacaacattaaattgaatgttccaaaaggttctaatgttgttgttttgaagaatctttacttgtcttgtgacccttacatgcgttcacgtatgagtaaacttgagggtagctatgttcagtccttcactcctggctcccctatcacaggatgtggagtggctaaagttttgaagtctggtgattcaaattttcaagaaggtgatttagtttggggaatgattggatgggaggagtatagtattgtaaatgctactcagagtgctctgtttaaaattcatgacaagaatgtacctctttcttactatacaggaatccttggaatgcctgggatgacagcttatgttggtttttatgagatttgctctccgaagaagggagaaaccgtgtatgtttctgctgcttctggagcagttggtcagcttgttggccaatttgcgaagacgttaggttgttatgttgttggtagtgctggaaccaaagaaaaggttgatctgttgaagaacaagttgggttttgatgaagcttttaactacaaagaggagaaggatttagttgcagatttgaagaggtactttcctaacggaattgacatatactttgagaatgttggagggaagatgcttgatgcagttcttatgaatatgaaacttcatggtcggattgctgtgtgtgggatgatctcacagtacaaccttgagaagacggaaggagttcacaacttgttctgcctcatcacaaaacgaatccggatggaaggttttcttgtttctgatcactatcatctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="39628" stop="43019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39930" g_stop="40184" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="299" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40185" i_stop="41382" i_length="1198">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41383" g_stop="41563" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="480" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41564" i_stop="41876" i_length="313">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41877" g_stop="42043" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="647" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42044" i_stop="42157" i_length="114">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42158" g_stop="42240" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="730" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42241" i_stop="42500" i_length="260">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42501" g_stop="42719" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="949" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U580450" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39930" e_stop="40184"/>
          <exon e_start="41383" e_stop="41563"/>
          <exon e_start="41877" e_stop="42043"/>
          <exon e_start="42158" e_stop="42240"/>
          <exon e_start="42501" e_stop="42719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCACATAAATTGAAGTGTGAAATGGCTGAAGAAATGATCATGAACAACAAACAAATCATTCTAAAACATTATGTGGAAGGTTACCCTAAGGAATCTGATTTGGAATTTAAGAATAACAACATTAAATTGAATGTTCCAGAAGGTTCTAATGTTGTTGTTTTGAAGAATCTTTACTTGTCTTGTGACCCTTACATGCGTTCACGTATGAGTAAACTTGAGGGTAGCTATGTTCAGTCCTTCACTCCTGGCTCCGTAAGTCGTTCACTTATTTTATTGAGTCGCTCTTGTAAATAATGATTTATGGATTTATCGATCTAGAATTTTTCACCATGTTATGATTGTGGATTTTTTATAAATTTAACATACAAGCATTTCTTGTTATTTTCGAAACAAATTACAAGTGAGTTCAAATTTTCCATGTAATTGTGTAGACCTAGGGTGTTTTTTTATTTAATATTATGTAGGGGTGTTTGGTGTAATGATGAGTATATTTTCTTAGGAAAATAATGAGTTTCATATTTATTTTCTAATATTTAATACGCTTAAGTGAAAAATATTTATGTATAATCTAGATAAATATTGAGATAGGTAGGTGGGTGGGATATATATTGTTTCCTAGTGGGGATGAGGGTGTAGATAAAGTGTGTTAGAGAGTGGGGAGGACATAATTGAAGTGCTGTGAAACTTATTTTCCTACTCTAAAGATAACTTTTACGATAGAACATGAAAAAATTACTGGGCATGCGAGTTTGATATAGCCCGTCTGATACCTTTGTATCTGAGTTCTCAAAATCCCACTCAAAAGGTGCTGAGTTGGAATCCAATTCTAACTAAGGATTTTTGTGGTTCCGGAGGATCCAACTACAGGAGAACCAGGAACGGAGGGCTTCCTCCCCCCTCCCCCTTTCCGCCCGACTCTTTGGTCTTAAGGACATTGGTTTTAAGAATGAGTCATTGCCCTTCTCCGACCCTAACTACCTAACCTGAGAGCAGACAGCTAAAGTGTTCCACTTATTGAACAGGGTTCTATGGTCAGTTTGTGACCCTCGGATGTCAAAGCCATCCTTGAGGTGAACCTCATAGTTCCTACGGGGTGGAGATGATGGGATCAATCCATCCATTTTCCTTCCTTTTCTTTAGCCGCATTTCACTCAAAAGGGTTGAAGGGAGATAGTGCATCAAACTTCTCGCAAGGGCCAACTTGATCCTCTTCCCCAGAGATCTCGGACGAGGGATCCCTGGGAGAGAAAAATGTTTTCTCCGCGTATCCTATTTCATTTTTCATTTCTTGTTCAAGAACTCTTAGATGTTAGAAACATTGAGGATAAAGTGAACTTCATTCTCCCAACTGAATGTTTATTCCTTATTTATCATGATATGAATGGATTAACAATTTCTCCTATGATGATAATGTTTCTCATAAGTACTTATCTTTTGTGTTATGTTATAGCCTATCACAGGATGTGGAGTGGCTAAAGTTTTGAAGTCTGGTGATTCAAATTTTCAAGAAGGTGATTTAGTTTGGGGAATGATTGGATGGGAGGAGTATAGTATTGTAAATGCTACTCAGAGTGCTCTGTTTAAAATTCATGACAAGAATGTACCTCTTTCTTACTATACAGGAATCCTTGGTGAGTTGTTCTCTTCTCAATATAACGACTGTTTGAGGAATGGACTGATGGTCTGCTTATATTTTTATAATCCATTGATGTCGCTTTCTATTTCATCAAAGAATTATGTGTTAGAATGAGTTAGCATCCCACGTTGGTTGGGGTTTGCTTATCTGGACTAATTTTTGGGTTGAGTTAGACACAAGTCTCGTAACTTTACATGATATGTGGACCTCGTACGTTCCTGTTTTGGAATGTTAGAGTTCCACATTGGTTGAATGGAGAATGGACGGGTGATTTGCTTATATGGACTCGGACAATTATTGTTTTGCAGGAATGCCTGGGATGACAGCTTATGTTGGTTTTTATGAGATTTGCTCTCCGAAGAAGGGAGAAACCGTGTATGTTTCTGCTGCTTCTGGAGCAGTTGGTCAGCTTGTTGGCCAATTTGCGAAGACGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAACCAAAGAAAAGGTTAAGTACTAGTACCTTTGCGATGTTTATATTTCCATTGTTGAATCTAAATAGTGGCAAAAGCTGTATTGCTTATCGTAATCAACATTGTTGAATCCGTCTCTCTTATTAAAGGTTGATCTGTTGAAGAACAAGTTGGGTTTTGATGAAGCTTTTAACTACAAAGAGGAGAAGGATTTAGTTGCAGATTTGAAGAGGTCAGTAATCTTATAACTTCTCACTACAAAATACTAATAGGCCCCGTGTAGAGAAGCCGTTTAGGATAGTGTTATTGTTTGGAGAGTTGACATCCCATTTTGGTTAAAACGGATGGTATACTAGCGGGGGAAGGACAACTATGAACCATTTTTGTAACGTTACGAGCATATATAGACAAATAGTACTATAACATAGGCGTTTATATGAACTCAGGGGCGGAGTCAGGTAACGTTATGACCCTTATTTGTATTTCTACTAGGTACTTTCCTAACGGAATTGACATATACTTTGAGAATGTTGGAGGGAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGGATTGCTGTGTGTGGGATGATCTCACAGTACAACCTTGAGAAGACGGAAGGAGTTCACAACTTGTTCTGCCTCATCACAAAACGAATCCGGATGGAGGGTTTTCTTGTTTCTGATCACTATCATCTCTA</genome_strand>
        <mrna_strand>GATTCACATAAATTGAAGTGTGAAATGGCTGAAGAAATGATCATGAACAACAAACAAATCATTCTAAAACATTATGTGGAAGGTTACCCTAAGGAATCTGATTTGGAATTTAAGAATAACAACATTAAATTGAATGTTCCAAAAGGTTCTAATGTTGTTGTTTTGAAGAATCTTTACTTGTCTTGTGACCCTTACATGCGTTCACGTATGAGTAAACTTGAGGGTAGCTATGTTCAGTCCTTCACTCCTGGCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATCACAGGATGTGGAGTGGCTAAAGTTTTGAAGTCTGGTGATTCAAATTTTCAAGAAGGTGATTTAGTTTGGGGAATGATTGGATGGGAGGAGTATAGTATTGTAAATGCTACTCAGAGTGCTCTGTTTAAAATTCATGACAAGAATGTACCTCTTTCTTACTATACAGGAATCCTTG.........................................................................................................................................................................................................................................................................................................................GAATGCCTGGGATGACAGCTTATGTTGGTTTTTATGAGATTTGCTCTCCGAAGAAGGGAGAAACCGTGTATGTTTCTGCTGCTTCTGGAGCAGTTGGTCAGCTTGTTGGCCAATTTGCGAAGACGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAACCAAAGAAAAG..................................................................................................................GTTGATCTGTTGAAGAACAAGTTGGGTTTTGATGAAGCTTTTAACTACAAAGAGGAGAAGGATTTAGTTGCAGATTTGAAGAG....................................................................................................................................................................................................................................................................GTACTTTCCTAACGGAATTGACATATACTTTGAGAATGTTGGAGGGAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGGATTGCTGTGTGTGGGATGATCTCACAGTACAACCTTGAGAAGACGGAAGGAGTTCACAACTTGTTCTGCCTCATCACAAAACGAATCCGGATGGAAGGTTTTCTTGTTTCTGATCACTATCATCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U601586" ref_strand="+" ref_description="SGN-U601586 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118482459|gb|ABK93152.1| (e_value=2e-20) unknown; (*ATH) AT2G42760.1 (e_value=7e-14) | Symbol: None | expressed protein | chr2:17803061-17804308 REVERSE | Aliases: F7D19.24, F7D19_24; ">
      <seq>cncaanaanaattaagctatatttttacagttgcaacaagcccaattaggccacaaaatgngtaccaaactacaaacaaacaaagaagcaaatgatgaaatcatanaaaagaagcacaaacaangtttatgttttttttttcatttgaaagttgatgcaacagtttgagcccaaaatctaanattatgtttcatattcatatcatttttcatagctggaaatctccatttcaacaattttttactcatttttcttttttcaanaatctcccatgcttcaaaaanataaggccttttatgaacaatatctttttttttaacattttcatcaacaattccccatttctccaatccaggaacaattctaaccaaacttgaattcttatcttcttcactaaactcaaatcctaaatccataaacccctttaattcctcaagttcaagctctgatgagcttcttcgaattcgaataattcccttgactccatttctagcctttacttttacttcttgggcaactctgttatgngngataataacagaagttggagagttcccaagttgactaaaactcggacttgtattcgatccttcaaaaatattctgcttttgaatgatctgacatacatctgacgatatttttaaagaacaatcactttgtgatcgacctaanagattggatgattctngaattcntggaggattttcttgaaaaanttcctngaatttatgggggnggnaaaaatatttctggtncaaccaanagnatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="49001" stop="47628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="47928" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U601586" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="47928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGAAGAATTAAGCTATATTTTTACAGTTGCAACAAGCCCAATTAGGCCACAAAATGTGTACCAAACTACAAACAAACAAAGAAGCAAATGATGAAATCATAGAAAAGAAGCACAAACAATGTTTATGTTTTTTTTTTCATTTGAAAGTTGATGCAACAGTTTGAGCCCAAAATCTAAGATTATGTTTCATATTCATATCATTTTTCATAGCTGGAAATCTCCATTTCAACAATTTTTTACTCATTTTTCTTTTTTCAAGAATCTCCCATGCTTCAGAAAGATAAGGCCTTTTATGAACAATATCTTTTTTTTTAACATTTTCATCAACAATTCCCCATTTCTCCAATCCAGGAACAATTCTAACCAAACTTGAATTCTTATCTTCTTCACTAAACTCAAATCCTAAATCCATAAACCCCTTTAATTCCTCAAGTTCAAGCTCTGATGAGCTTCTTCGAATTCGCATAATTCCCTTGACTCCATTTCTAGCCTTTACTTTTACTTCTTGTGCAACTCTGTTATGTGTGATAATAACAGAAGTTGGAGAGTTCCCAAGTTGACTAAAACTCGGACTTGTATTCGATCCTTCAAAAATATTCTGCTTTTGAATGATCTGACATACATCTGACGATATTTTTAAAGAACAATCACTTTGTGATCGACCTAAGAGATTTGATGATTCTTGAATTTCATGAGGATTTTCTTGAAATAATTTCTTGAATTTATGTGTGTTGGAAAATAATATTTCTTGTTCAAACCAATAAGTATCA</genome_strand>
        <mrna_strand>CNCAANAANAATTAAGCTATATTTTTACAGTTGCAACAAGCCCAATTAGGCCACAAAATGNGTACCAAACTACAAACAAACAAAGAAGCAAATGATGAAATCATANAAAAGAAGCACAAACAANGTTTATGTTTTTTTTTTCATTTGAAAGTTGATGCAACAGTTTGAGCCCAAAATCTAANATTATGTTTCATATTCATATCATTTTTCATAGCTGGAAATCTCCATTTCAACAATTTTTTACTCATTTTTCTTTTTTCAANAATCTCCCATGCTTCAAAAANATAAGGCCTTTTATGAACAATATCTTTTTTTTTAACATTTTCATCAACAATTCCCCATTTCTCCAATCCAGGAACAATTCTAACCAAACTTGAATTCTTATCTTCTTCACTAAACTCAAATCCTAAATCCATAAACCCCTTTAATTCCTCAAGTTCAAGCTCTGATGAGCTTCTTCGAATTCGAATAATTCCCTTGACTCCATTTCTAGCCTTTACTTTTACTTCTTGGGCAACTCTGTTATGNGNGATAATAACAGAAGTTGGAGAGTTCCCAAGTTGACTAAAACTCGGACTTGTATTCGATCCTTCAAAAATATTCTGCTTTTGAATGATCTGACATACATCTGACGATATTTTTAAAGAACAATCACTTTGTGATCGACCTAANAGATTGGATGATTCTNGAATTCNTGGAGGATTTTCTTGAAAAANTTCCTNGAATTTATG-GGGGNGGNAAA-AATATTTCTGGTNC-AACCAA-NAGNATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578115" ref_strand="+" ref_description="SGN-U578115 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|78191444|gb|ABB29943.1| (e_value=5e-90) ribosomal protein L11-like protein [Solanum tuberosum]; (*ATH) AT3G58700.1 (e_value=2e-89) | Symbol: None | 60S ribosomal protein L11 (RPL11B), ribosomal protein L11, cytosolic, Arabidopsis thaliana, PIR:S49033 | chr3:21722540-21723930 FORWARD | Aliases: T20N10.50; (*SWP) sp|P42795|RL111_ARATH (e_value=2e-88) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A; ">
      <seq>actcttctcttcttcctctctctgtgtgtgaaccctaaactcctgccgccatggcttcagagaagaaattgagcaatccaatgagggatatcaaagtccagaagctcgtactcaatatctccgttggtgaaagtggagatcgtctcaccagagctgcaaaggtattggagcaactcagtggccaaagtcctgttttctccaaagctaggtatactgtccgttcctttggaatcagacgtaatgaaaagatcgcctgttacgtcactgtcagaggggaaaaagctatgcagctccttgagagtggattgaaggtcaaggagtatgagttgttgagaaggaacttcagtgaaactggatgctttggatttggtattcaggagcacattgatcttggaatcaagtatgatccttcaactggtatctatggtatggatttctatgttgtcctggaacgcccaggataccgcgttgctagacgtcgtaggtgcaagtctcgggttgggatccaacacagggtcacaaaggaggactcaatgaagtggtttcaggtcaaatatgaaggtgttatccttaacaagtcctcaaacatccagtaagtcgagagccgactgctggatcagtttatctgacagcaagttttttgtttatgcattttgtagaccgaagtctagttacttctagaattgaatagttttcaagagttgctgttatttggcacagtatgcttgttttcatttttggtttatgagaccaattcaatctttaatataatcctttttgtgttagtttcctgttgtgcaattctataagaagcagaaaacatcagtttttctcaagtctgaactaatcaaactaataaaaatattatagttgtatttttttcccatttattttatggtatatattgctacattgactttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="52543" stop="49961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52243" g_stop="52191" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52190" i_stop="52088" i_length="103">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52087" g_stop="51980" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="161" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51979" i_stop="51852" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51851" g_stop="51809" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="204" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51808" i_stop="51261" i_length="548">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51260" g_stop="51065" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="400" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51064" i_stop="50781" i_length="284">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50780" g_stop="50261" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="923" r_length="523" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U578115" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52243" e_stop="52191"/>
          <exon e_start="52087" e_stop="51980"/>
          <exon e_start="51851" e_stop="51809"/>
          <exon e_start="51260" e_stop="51065"/>
          <exon e_start="50780" e_stop="50261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCTCTTCTTCCTCTCTCTGTGTGTGAACCCTAAACTCCTGCCGCCATGGTAGCTCTCTATGCCTTCCATTTTCGATGAATTTTGTTGCTTTTTTACATATGAATATTTGAAATCTAATGTAATCTCTGTGTATTTTTTTTTTTGTGATTAGGCTTCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAGGTGTGAATCCCTAATTTGCTGCAAAAGATGAATTAGTATTAGAATGAAATGAATCTGAGTAAGATTTGGATTAGTTTTAGAATTGAAGTGTAGATAGCTAATTGAATGTGTGATTTATTGTATTTTAGGTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAGGTATGCTTTTGAATTGCATTCTTTATTTATTTTGTATGTTATGACTGGTTTCAGTTCCTTATGCACATTTTATCGAACATGATTTTCGGTTCTTCGAGCTTTATTTGTGTCAAAGATTGAATATTTGCTTATATATGGAGTCTCACTATTGGTGTTTGAGCTGTTTGATTTTGGTGATTTGTTGAAGTTTGGATTTAATTTGTTTTTGTAGGAATATAGATAACGAGCTGAAGGTGTTACTCAACTAGGGAAAAAAGAGAGTTTCTAAGTAATGTGGATTTAGTACGAACTTATGAGTGCTCTTAATTTGTCAATTTTGTGTAACAATTTGAAATAATTGGAACTTGCTTAACTTGGTGCTACAAGTTATGCATATAATTCCTCATTTGTATTACATTGATATGGGGTACTTTGTACTTATGTTTAATGCAATTATTCATGAAATGTATGGTTTGGTGTTGTTTGTCTTTTAACTTGTTACACATTATCTTATTTTGCATTGGTTGCTGTTTCATGTTTTCATGTGCTTTCTTTATTCCCATTGACAGCTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTAAGCATGTTACTGAGATCTTGCTTTGATTCGTTATTCGGACTACTTCTTAATCCTACATATTTATCTTAGGAGGTGCTGCTAGCTTTTATTATGCCAAAACAATTACTCATGCGCGTTCACATATTTACCGGTTGATCATCTTCTAGAAGTGTAGTTGCTTCTTCCATGAGTTTACATGGAATAGATGTTACTATATGAGGTTATATCAGCTGGTCATGATAGTATCTTCGGATTGTTGTGCTCTTATAAATCATTTGACATACTATTCCTTTGTGTTAAAGGTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTTGTAGACCGAAGTCTAGTTACTTCTAGAATTGAATAGTTTTCAAGAGTTGCTGTTATTTGGCACAGTATGCTTGTTTTCATTTTTGGTTTATGAGACCAATTCAATCTTTAATATAATCCTTTTTGTGTTAG-TT--TGTTGTGCAATTCTATAAGAAGCAGAAAACATCAGTTTTTCTCAAGTCTGAACTAATCAAACTAATAAAAATATTATAGTTGTATTTTTTTCCCATTTATTTTATGGTATATATTGCTACATTGACTTTACT</genome_strand>
        <mrna_strand>ACTCTTCTCTTCTTCCTCTCTCTGTGTGTGAACCCTAAACTCCTGCCGCCATG.......................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAG................................................................................................................................GTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAA............................................................................................................................................................................................................................................................................................GTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTTGTAGACCGAAGTCTAGTTACTTCTAGAATTGAATAGTTTTCAAGAGTTGCTGTTATTTGGCACAGTATGCTTGTTTTCATTTTTGGTTTATGAGACCAATTCAATCTTTAATATAATCCTTTTTGTGTTAGTTTCCTGTTGTGCAATTCTATAAGAAGCAGAAAACATCAGTTTTTCTCAAGTCTGAACTAATCAAACTAATAAAAATATTATAGTTGTATTTTTTTCCCATTTATTTTATGGTATATATTGCTACATTGACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U591859" ref_strand="+" ref_description="SGN-U591859 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aataggatatataaaagattgaattaggggtcataaaccaaaaatgaaaacaagcatactgtgccaaataacagcaactcttgaaaactattcaattctagaagtaactagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="50104" stop="50815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50403" g_stop="50515" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U591859" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>113</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50403" e_stop="50515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGATTATATTAAAGATTGAATT-GGTCTCATAAACCAAAAATGAAAACAAGCATACTGTGCCAAATAACAGCAACTCTTGAAAACTATTCAATTCTAGAAGTAACTAGAC</genome_strand>
        <mrna_strand>AATAGGAT-ATATAAAAGATTGAATTAGGGGTCATAAACCAAAAATGAAAACAAGCATACTGTGCCAAATAACAGCAACTCTTGAAAACTATTCAATTCTAGAAGTAACTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593030" ref_strand="+" ref_description="SGN-U593030 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|78191444|gb|ABB29943.1| (e_value=5e-57) ribosomal protein L11-like protein [Solanum tuberosum]; (*ATH) AT3G58700.1 (e_value=5e-58) | Symbol: None | 60S ribosomal protein L11 (RPL11B), ribosomal protein L11, cytosolic, Arabidopsis thaliana, PIR:S49033 | chr3:21722540-21723930 FORWARD | Aliases: T20N10.50; (*SWP) sp|P42795|RL111_ARATH (e_value=4e-57) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A; ">
      <seq>gcagagaagaaattgagcaatccaatgagggatatcaaagtccagaagctcgtactcaatatctccgttggtgaaagtggagatcgtctcaccagagctgcaaaggtattggagcaactcagtggccaaagtcctgttttctccaaagctaggtatactgtccgttcctttggaatcagacgtaatgaaaagatcgcctgttacgtcactgtcagaggggaaaaagctatgcagctccttgagagtggattgaaggtcaaggagtatgagttgttgagaaggaacttcagtgaaactggatgctttggatttggtattcaggagcacattgatcttggaatcaagtaagcatgttactgagatcttgctttgattcgttattcggactacttcttaatcctacatatttatcttaggaggtgctgctagcttttattatgccaaaacaattactcatgcgcgttcacatatttaccggttgatcatcttctagaagtgtagttgcttcttccatgagtttacatggaatagatgttactatatgaggttatatcagctggtcatgatagtatcttcggattgttgtgctcttataaatcatttgacatactattcctttgtgttaaaggtatgatccttcaactggtatctatggtatggatttctatgttgtcctggaacgcccaggataccgcgttgctagacgtcgtaggtgcaagtctcgggttgggatccaacacagggtcacaaaggaggactcaatgaagtggtttcaggtcaaatatgaaggtgttatccttaacaagtcctcaaacatccagtaagtcgagagccgactgctggatcagtttatctgacagcaagttttttgtttatgcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="52383" stop="50226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52084" g_stop="51980" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51979" i_stop="51852" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51851" g_stop="51809" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="148" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51808" i_stop="51261" i_length="548">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51260" g_stop="50526" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="883" r_length="735" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U593030" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52084" e_stop="51980"/>
          <exon e_start="51851" e_stop="51809"/>
          <exon e_start="51260" e_stop="50526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAGGTGTGAATCCCTAATTTGCTGCAAAAGATGAATTAGTATTAGAATGAAATGAATCTGAGTAAGATTTGGATTAGTTTTAGAATTGAAGTGTAGATAGCTAATTGAATGTGTGATTTATTGTATTTTAGGTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAGGTATGCTTTTGAATTGCATTCTTTATTTATTTTGTATGTTATGACTGGTTTCAGTTCCTTATGCACATTTTATCGAACATGATTTTCGGTTCTTCGAGCTTTATTTGTGTCAAAGATTGAATATTTGCTTATATATGGAGTCTCACTATTGGTGTTTGAGCTGTTTGATTTTGGTGATTTGTTGAAGTTTGGATTTAATTTGTTTTTGTAGGAATATAGATAACGAGCTGAAGGTGTTACTCAACTAGGGAAAAAAGAGAGTTTCTAAGTAATGTGGATTTAGTACGAACTTATGAGTGCTCTTAATTTGTCAATTTTGTGTAACAATTTGAAATAATTGGAACTTGCTTAACTTGGTGCTACAAGTTATGCATATAATTCCTCATTTGTATTACATTGATATGGGGTACTTTGTACTTATGTTTAATGCAATTATTCATGAAATGTATGGTTTGGTGTTGTTTGTCTTTTAACTTGTTACACATTATCTTATTTTGCATTGGTTGCTGTTTCATGTTTTCATGTGCTTTCTTTATTCCCATTGACAGCTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTAAGCATGTTACTGAGATCTTGCTTTGATTCGTTATTCGGACTACTTCTTAATCCTACATATTTATCTTAGGAGGTGCTGCTAGCTTTTATTATGCCAAAACAATTACTCATGCGCGTTCACATATTTACCGGTTGATCATCTTCTAGAAGTGTAGTTGCTTCTTCCATGAGTTTACATGGAATAGATGTTACTATATGAGGTTATATCAGCTGGTCATGATAGTATCTTCGGATTGTTGTGCTCTTATAAATCATTTGACATACTATTCCTTTGTGTTAAAGGTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTT</genome_strand>
        <mrna_strand>GCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAG................................................................................................................................GTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTAAGCATGTTACTGAGATCTTGCTTTGATTCGTTATTCGGACTACTTCTTAATCCTACATATTTATCTTAGGAGGTGCTGCTAGCTTTTATTATGCCAAAACAATTACTCATGCGCGTTCACATATTTACCGGTTGATCATCTTCTAGAAGTGTAGTTGCTTCTTCCATGAGTTTACATGGAATAGATGTTACTATATGAGGTTATATCAGCTGGTCATGATAGTATCTTCGGATTGTTGTGCTCTTATAAATCATTTGACATACTATTCCTTTGTGTTAAAGGTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593756" ref_strand="+" ref_description="SGN-U593756 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9963897|gb|AAG09751.1|AF237625_1 (e_value=7e-29) oleosin; (*ATH) AT3G01570.1 (e_value=2e-25) | Symbol: None | glycine-rich protein / oleosin, similar to oleosin GB:AAB58402 (Sesamum indicum) | chr3:221946-222827 REVERSE | Aliases: F4P13.12, F4P13_12; (*SWP) sp|Q9SS98|OLEO5_ARATH (e_value=2e-24) Putative oleosin 5 OS=Arabidopsis thaliana GN=At3g01570; ">
      <seq>atcggccgaattgactacaatactttctctacacaacaaacacaaaaattctcttaattcttatcatatcttcatctgtgttatttaactatgggtgatcgagatcgtactcagtatccccatcaagttcaagttcatccttcaagtcgttatgaaggtggtataagtacacttctccctcaaaagggtccttcaactagccaagttttagctgttgttacgcttgttccagtcggcggtattcttcttggccttgcaggacttactctgctcggaactattattggacttgctgttgctacccctgtttttcttctatttagccctgtactcgtacctgctgctgttaccgttgcactcgcagtcactggtttcttaacttcaggtgcatttggattgacgggtttatcatcgctgtcatggattgtgaattacttcaaacagggaaggacaacgatggagcaattggattatacgaaaaggcgaattcaggagcgagcagcaaaagcagcggcgcaagtgggacagaagactaaggagactggacaagcaatacagagcaaagcacaagaaacgaaagaaagtgctaggagtgatgttagagcttaagtagtttggggtttctatgtggtgaaatatgcacttgtattttatttttgctttttgcaagcgttttctgtgtgcagtgtttgttgttagttttctttttttgtaatgcgctgttgttttttgttatttgtaatttaataatacttagcattttctatgctcatattgtccttgggagttccttactttatcaaggtctaaagcattactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="55275" stop="53447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54984" g_stop="54601" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54600" i_stop="54182" i_length="419">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54181" g_stop="53747" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="820" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U593756" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54984" e_stop="54601"/>
          <exon e_start="54181" e_stop="53747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTCCATT-ACTACAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAGGTTTATTTATACTCTCTCTTTCCGAACTCTTACATCGGTGATTATCGTTGGTTAATGAAATGACTTTTGACGGTTTGATCAATCTTCTTCACTTCTGTTCAAAATCTTGAGCAAATTTTTTGGGTAATTTAACACGGTATAGTCTCATCCTATGTTAAAGATATAATTTAACATGGTATCAGAGTAGAGTCCGTCTCACCTGAGGCCTTGGGAAATGCTACCCACGGGAGGTGGGTGTTAAAAAATGACAAAAATTTCGATGGTTAATGAGAAAGAGTGGACTTTTTATAAGGATTGAACAATCCTTCTCTCTTCAAGCTCCAAGATGTGAATTAGGTCTAAAATCTAATTTTGATAGATATGTTTTGTTTTCAATTGATACGAGTATGACTCTGATTGGGTGTTGTTGTCTAATGTAGGTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTATACGAAAAGGCGAATTCAGGAGCGAGCAGCAGAAGCAGCGGCGCAAGTGGGACAGAAGACTAAGGAGACTGGACAAGCAATACAGAGCAAAGCACAAGAAACGAAAGAAAGTGCTAGGAGTGATGTTAGAGCTTAAGTAGTTTGGGGTTTCTATGTGGTGAAATATGCACTTGTATTTTATTTTTGCTTTTTGCAAGCGTTTTCTGTGTGCAGTGTTTGTTGTTAGTTTTCTTTTTTTGTAATGCGCTGTTGTTTTTTGTTATTTGTAATTTAATAATACTTAGCATTTTCTATGCTCATATTGTCCTTGGGAGTTCCTTACTTTATCAAGGTCTAAAGCATTACTC</genome_strand>
        <mrna_strand>ATCGGCCGAATTGACTACAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTATACGAAAAGGCGAATTCAGGAGCGAGCAGCAAAAGCAGCGGCGCAAGTGGGACAGAAGACTAAGGAGACTGGACAAGCAATACAGAGCAAAGCACAAGAAACGAAAGAAAGTGCTAGGAGTGATGTTAGAGCTTAAGTAGTTTGGGGTTTCTATGTGGTGAAATATGCACTTGTATTTTATTTTTGCTTTTTGCAAGCGTTTTCTGTGTGCAGTGTTTGTTGTTAGTTTTCTTTTTTTGTAATGCGCTGTTGTTTTTTGTTATTTGTAATTTAATAATACTTAGCATTTTCTATGCTCATATTGTCCTTGGGAGTTCCTTACTTTATCAAGGTCTAAAGCATTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592841" ref_strand="+" ref_description="SGN-U592841 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaatactttctctacacaacaaacacaaaaattctcttaattcttatcatatcttcatctgtgttatttaactatgggtgatcgagatcgtactcagtatccccatcaagttcaagttcatccttcaagtcgttatgaaggtggtataagtacacttctccctcaaaagggtccttcaactagccaagttttagctgttgttacgcttgttccagtcggcggtattcttcttggccttgcaggacttactctgctcggaactattattggacttgctgttgctacccctgtttttcttctatttagccctgtactcgtacctgctgctgttaccgttgcactcgcagtcactggtttcttaacttcaggtttatttatactctctctttccgaactcttacatcggtgattatcgttggttaatgaaatgacttttgacggtttgatcaatcttcttcacttctgttcaaaatcttgagcaaattttttgggtaatttaacacggtatagtctcatcctatgttaaagatataatttaacatggtatcagagtagagtccgtctcacctgaggccttgggaaatgctacccacgggaggtgggtgttaaaaaatgacaaaaatttcgatggttaatgagaaagagtggactttttataaggattgaacaatccttctctcttcaagctccaagatgtgaattaggtctaaaatctaattttgatagatatgttttgttttcaattgatacgagtatgactctgattgggtgttgttgtctaatgtaggtgcatttggattgacgggtttatcatcgctgtcatggattgtgaattacttcaaacagggaaggacaacgatggagcaattggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="55267" stop="53794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54968" g_stop="54094" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U592841" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54968" e_stop="54094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAGGTTTATTTATACTCTCTCTTTCCGAACTCTTACATCGGTGATTATCGTTGGTTAATGAAATGACTTTTGACGGTTTGATCAATCTTCTTCACTTCTGTTCAAAATCTTGAGCAAATTTTTTGGGTAATTTAACACGGTATAGTCTCATCCTATGTTAAAGATATAATTTAACATGGTATCAGAGTAGAGTCCGTCTCACCTGAGGCCTTGGGAAATGCTACCCACGGGAGGTGGGTGTTAAAAAATGACAAAAATTTCGATGGTTAATGAGAAAGAGTGGACTTTTTATAAGGATTGAACAATCCTTCTCTCTTCAAGCTCCAAGATGTGAATTAGGTCTAAAATCTAATTTTGATAGATATGTTTTGTTTTCAATTGATACGAGTATGACTCTGATTGGGTGTTGTTGTCTAATGTAGGTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTA</genome_strand>
        <mrna_strand>GAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAGGTTTATTTATACTCTCTCTTTCCGAACTCTTACATCGGTGATTATCGTTGGTTAATGAAATGACTTTTGACGGTTTGATCAATCTTCTTCACTTCTGTTCAAAATCTTGAGCAAATTTTTTGGGTAATTTAACACGGTATAGTCTCATCCTATGTTAAAGATATAATTTAACATGGTATCAGAGTAGAGTCCGTCTCACCTGAGGCCTTGGGAAATGCTACCCACGGGAGGTGGGTGTTAAAAAATGACAAAAATTTCGATGGTTAATGAGAAAGAGTGGACTTTTTATAAGGATTGAACAATCCTTCTCTCTTCAAGCTCCAAGATGTGAATTAGGTCTAAAATCTAATTTTGATAGATATGTTTTGTTTTCAATTGATACGAGTATGACTCTGATTGGGTGTTGTTGTCTAATGTAGGTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U562607" ref_strand="+" ref_description="SGN-U562607 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|15227978|ref|NP_181797.1| (e_value=4e-140) lipase, putative [Arabidopsis thaliana]; (*ATH) AT2G42690.1 (e_value=3e-142) | Symbol: None | lipase, putative, similar to lipase (Dianthus caryophyllus) GI:4103627; contains Pfam profile PF01764: Lipase | chr2:17783318-17784794 REVERSE | Aliases: F14N22.2; ">
      <seq>ctagtttatcatcaaaaatggaaaaagaagcaacatggcatgaacttttagggagcaaagattgggatggcctccttcaacctctaaatctccctctccggcgtctaattctccggtgcggtgacttttgtcaagctacttacgatgctttcaacaatgaccaaaattccaagtattgtggcaccagtcgttatggtaaaagttcatttttcgacaaagtcatgttagaatcctctaccgattataaaatatattgcttcctctatgctactgctaaaataggtgcactggaagccattttcctccactctctgtctcgcgaatcgtgggacagagagtctaattggatcggctatatagccgttacgactgatgaagtcagtcgtaaactaggacgtagggaagtgtacgttgtgtttcgtggcacgagtaggaattacgaatgggtcaacgttttaggtgctcgtcctgattcagctgactctcttcttcatcctaaatctctccaaaaaggcattaacaacaagaacgatgaggatgaggacgaggacgaggatgagatcaaagtaatggatgggtggcttaagatttacgtctcaagtaacccgaagtcgtctttcacgagactaagtgcaagagaacaacttcaagcaaagattgaaaagttaagaaatgagtataaagatgagaatttgagcataacttttacagggcatagtcttggtgctagcttagctgttttagcttcatttgatgtggttgaaaatggtgtgccagttgatattccagtatctgcaattgtatttggtagtccacaagttgggaataaggcattcaatgaaagaatcaagaaattctcaaacttgaatatcttacatgttaagaacaagattgatctcattaccctttacccaagtgctctgtttgggtatgtgaattcaggtatagagctagtcatcgatagcagaaagtctcccagtttaaaggattcaaaagacatgggcgattggcacaacttgcaggggatgttacatgttgtggcgggatggaacggggaagataagaagtttgagttgaaagtgaagaggagtgtagctttggtgaacaagtcatcgtcatttttgaaagatgactacttgattccagggtcgtggtggattgagaagaatagaggaatggtttttgataaaaatggagagtggattttggcaccgccttcagatgaggaccttccagtccctgagtattgaatttatgggaatggagagtttgttcactttgcaattatttttgtttattgatattgctttggtcttggaaatgtaaatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="57034" stop="59299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57334" g_stop="58275" g_length="942"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="942" r_length="942" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58276" i_stop="58608" i_length="333">
            <donor d_prob="0.388" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58609" g_stop="58999" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="943" r_stop="1332" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U562607" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1333</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57334" e_stop="58275"/>
          <exon e_start="58609" e_stop="58999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTATCATCAAAAATGGAAAAAGAAGCAACATGGCATGAACTTTTAGGGAGCAAAGATTGGGATGGCCTCCTTCAACCTCTAAATCTCCCTCTCCGGCGTCTAATTCTCCGGTGCGGTGACTTTTGTCAAGCTACTTACGATGCTTTCAACAATGACCAAAATTCCAAGTATTGTGGCACCAGTCGTTATGGTAAAAGTTCATTTTTCGACAAAGTCATGTTAGAATCCTCTACCGATTATAAAATATATTGCTTCCTCTATGCTACTGCTAAAATAGGTGCACTGGAAGCCATTTTCCTCCACTCTCTGTCTCGCGAATCGTGGGACAGAGAGTCTAATTGGATCGGCTATATAGCCGTTACGACTGATGAAGTCAGTCGTAAACTAGGACGTAGGGAAGTGTACGTTGTGTTTCGTGGCACGAGTAGGAATTACGAATGGGTCAACGTTTTAGGTGCTCGTCCTGATTCAGCTGACTCTCTTCTTCATCCTAAATCTCTCCAAAAAGGCATTAACAACAAGAACGATGAGGATGAGGACGAGGACGAGGATGAGATCAAAGTAATGGATGGGTGGCTTAAGATTTACGTCTCAAGTAACCCGAAGTCGTCTTTCACGAGACTAAGTGCAAGAGAACAACTTCAAGCAAAGATTGAAAAGTTAAGAAATGAGTATAAAGATGAGAATTTGAGCATAACTTTTACAGGGCATAGTCTTGGTGCTAGCTTAGCTGTTTTAGCTTCATTTGATGTGGTTGAAAATGGTGTGCCAGTTGATATTCCAGTATCTGCAATTGTATTTGGTAGTCCACAAGTTGGGAATAAGGCATTCAATGAAAGAATCAAGAAATTCTCAAACTTGAATATCTTACATGTTAAGAACAAGATTGATCTCATTACCCTTTACCCAAGTGCTCTGTTTGGGTATGTGAATTCAGGTATTGAAGGAAAAGATCATTACAATTTTGAGCTAGATTTCTCATATCGTCACACTCAACTAACAGTTATTATATGAGAAAGTCACTTTCTTTGTTGAAAAAATTTGAATCAACTTTTGGAAATAATAGTAGTTGAGTGACCATATGAGAAATCAACACTCTACTAACTTTATGCTATAAGAGAATAGGTTAAGGTCCATATGTTTATACTGTCTGTTCAATTAGAATCATAAAAGTATTACTAGTTAAATTTGACTACAATCTTATGTAGACATGAATAAAATAAATCCTACATAAATAAGATTTCCTACAACTTTAATGATTCTTCAACAGGTATAGAGCTAGTCATCGATAGCAGAAAGTCTCCGAGTTTAAAGGATTCAAAAGACATGGGCGATTGGCACAACTTGCAGGGGATGTTACATGTTGTGGCGGGATGGAACGGGGAAGATAAGAAGTTTGAGTTGAAAGTGAAGAGGAGTGTAGCTTTGGTGAACAAGTCATCGTCATTTTTGAAAGATGACTACTTGATTCCAGGGTCGTGGTGGATTGAGAAGAATAGAGGAATGGTTTTTGATAAAAATGGAGAGTGGATTTTGGCACCGCCTTCAGATGAGGACCTTCCAGTCCCTGAGTATTGAATTTATGGGAATGGAGAGTTTGTTCACTTTGCAATTATTTTTGTTTATTGATATTGCTTTGGTCTTGTCAAATGTAAATGTCT</genome_strand>
        <mrna_strand>CTAGTTTATCATCAAAAATGGAAAAAGAAGCAACATGGCATGAACTTTTAGGGAGCAAAGATTGGGATGGCCTCCTTCAACCTCTAAATCTCCCTCTCCGGCGTCTAATTCTCCGGTGCGGTGACTTTTGTCAAGCTACTTACGATGCTTTCAACAATGACCAAAATTCCAAGTATTGTGGCACCAGTCGTTATGGTAAAAGTTCATTTTTCGACAAAGTCATGTTAGAATCCTCTACCGATTATAAAATATATTGCTTCCTCTATGCTACTGCTAAAATAGGTGCACTGGAAGCCATTTTCCTCCACTCTCTGTCTCGCGAATCGTGGGACAGAGAGTCTAATTGGATCGGCTATATAGCCGTTACGACTGATGAAGTCAGTCGTAAACTAGGACGTAGGGAAGTGTACGTTGTGTTTCGTGGCACGAGTAGGAATTACGAATGGGTCAACGTTTTAGGTGCTCGTCCTGATTCAGCTGACTCTCTTCTTCATCCTAAATCTCTCCAAAAAGGCATTAACAACAAGAACGATGAGGATGAGGACGAGGACGAGGATGAGATCAAAGTAATGGATGGGTGGCTTAAGATTTACGTCTCAAGTAACCCGAAGTCGTCTTTCACGAGACTAAGTGCAAGAGAACAACTTCAAGCAAAGATTGAAAAGTTAAGAAATGAGTATAAAGATGAGAATTTGAGCATAACTTTTACAGGGCATAGTCTTGGTGCTAGCTTAGCTGTTTTAGCTTCATTTGATGTGGTTGAAAATGGTGTGCCAGTTGATATTCCAGTATCTGCAATTGTATTTGGTAGTCCACAAGTTGGGAATAAGGCATTCAATGAAAGAATCAAGAAATTCTCAAACTTGAATATCTTACATGTTAAGAACAAGATTGATCTCATTACCCTTTACCCAAGTGCTCTGTTTGGGTATGTGAATTCAG.............................................................................................................................................................................................................................................................................................................................................GTATAGAGCTAGTCATCGATAGCAGAAAGTCTCCCAGTTTAAAGGATTCAAAAGACATGGGCGATTGGCACAACTTGCAGGGGATGTTACATGTTGTGGCGGGATGGAACGGGGAAGATAAGAAGTTTGAGTTGAAAGTGAAGAGGAGTGTAGCTTTGGTGAACAAGTCATCGTCATTTTTGAAAGATGACTACTTGATTCCAGGGTCGTGGTGGATTGAGAAGAATAGAGGAATGGTTTTTGATAAAAATGGAGAGTGGATTTTGGCACCGCCTTCAGATGAGGACCTTCCAGTCCCTGAGTATTGAATTTATGGGAATGGAGAGTTTGTTCACTTTGCAATTATTTTTGTTTATTGATATTGCTTTGGTCTTG-GAAATGTAAATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572469" ref_strand="+" ref_description="SGN-U572469 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147810398|emb|CAN59822.1| (e_value=7e-87) hypothetical; (*ATH) AT2G42620.1 (e_value=2e-85) | Symbol: None | F-box family protein (ORE9), E3 ubiquitin ligase SCF complex F-box subunit; identical to F-box containing protein ORE9 GI:15420162 from (Arabidopsis thaliana) | chr2:17763217-17765545 FORWARD | Aliases: F14N22.11, F14N22_11; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=2e-84) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9; ">
      <seq>gaaattgaaaatcttaatggtgttgaatacggatttgatctcaataagaccaatggaggcgaggcatcaactcatcctaatggatctggggacacatttggatccatggatgatgatatcgtgtttaacaggaataaacgatgcaagtatggttatgatcttaatagtgtccgcatggaagacaatggccatgggaatggttttggtggacggacatgggaccggatgcaatacctctcactttggattggtgtcagagatcttttaactcctttagcagctgcaggtcttgaacattgccctaacttggaggagatcaagattagagtggaaggagattgcaggctatggtcaaaaccttcagagagggcatttggattgagcacccttttgcggtaccataaacttgtgaagatgcatttggattgtggagatatcataggttacgcacacactgccccgtcggggcagatggatttgagcttatgggaacggttttatctctttggtattggaactttgaatctcagggagcttgattactggccaccacaagataaagatgttaatcaaaggagtctatccctcccagcagctgggctgctccaaaaatgcatcacactcaaaaagttgttcatccatggaacggcacatgaacatttcatgatgttcctgcttagaatcccaaacctacgagatgtacagctgaaaaaagattactatccggcaccaaagaatgacatgagtactgaaatgaggtcagactccttgagccgctttgaaacggctttaaacaaacgacaaatttgtgattgatgcaaggaacatattacattgttcaatttccattgtttaaggttttattcctgattcattcaaggaacaggtactgttatgcaacttccctatatgcccctgttgtcatagattatattcctgcaatagtattgttgtcatatttaatatccagattttttgtatagttttacacatcagttaaattacgcattttgaataaaaaatatgatcaactttgggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="62147" stop="60507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61847" g_stop="60806" g_length="1042"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1042" r_length="1042" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U572469" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1042</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61847" e_stop="60806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAAAATCTTAATGGTGTTGAATACGGATTTGATCTCAATAAGACCAATGGAGGCGAGGCATCAACTCATCCTAATGGATCTGGGGACACATTTGGATCCATGGATGATGATATCGTGTTTAACAGGAATAAACGATGCAAGTATGGTTATGATCTTAATAGTGTTTGCATGGAAGACAATGGCCATGGGAATGGTTTTGGTGGACGGACATGGGACCGGCTGCAATACCTCTCACTTTGGATTGGTGTCGGTGATCTTTTAACTCCTTTAGCAGCTGCAGGTCTTGAACATTGTCCTAACTTGGAGGAGATCAAGATTAGAGTGGAAGGAGATTGCAGGCTATGGTCAAAACCTTCAGAGAGGGCATTTGGATTGAGCACCCTTTTGCGGTACCATAAACTTGTGAAGATGCATTTGGATTGTGGAGATATCATAGGTTACGCACACACTGCCCCGTCGGGGCAGATGGATTTGAGCTTATGGGAACGGTTTTATCTCTTTGGTATTGGAACTTTGAATCTCAGGGAGCTTGATTACTGGCCACCACAAGATAGAGATGTTAATCAAAGGAGTCTATCCCTCCCAGCAGCTGGGCTGCTCCAAGAATGCATCACACTCAGAAAGTTGTTCATCCATGGAACGGCACATGAACATTTCATGATGTTCCTGCTTAGAATCCCAAACCTACGAGATGTACAGCTGAGAGAAGATTACTATCCGGCACCAGAGAATGACATGAGTACTGAAATGAGGTCAGACTCCTTGAGCCGCTTTGAAGCGGCTCTAAACAGACGACAAATTTGTGATTGATGCAAGGAACATATTACATTGTTCAATTTCCATTGTCTAAGGTTTTATTCCTGATTCATTCAAGGAACAGGTACTGTTATGCAACTTCCCTATATGCCCCTGTTGTCATAGATTATATTCCTGCAATAGTATTGTTGTCATATTTAATATCCAGATCTTCTGTATAGTTTTACACATCAGTTAAATTACGCATTTTGAATAAAAAATATGATCAACTTTGGGTGTA</genome_strand>
        <mrna_strand>GAAATTGAAAATCTTAATGGTGTTGAATACGGATTTGATCTCAATAAGACCAATGGAGGCGAGGCATCAACTCATCCTAATGGATCTGGGGACACATTTGGATCCATGGATGATGATATCGTGTTTAACAGGAATAAACGATGCAAGTATGGTTATGATCTTAATAGTGTCCGCATGGAAGACAATGGCCATGGGAATGGTTTTGGTGGACGGACATGGGACCGGATGCAATACCTCTCACTTTGGATTGGTGTCAGAGATCTTTTAACTCCTTTAGCAGCTGCAGGTCTTGAACATTGCCCTAACTTGGAGGAGATCAAGATTAGAGTGGAAGGAGATTGCAGGCTATGGTCAAAACCTTCAGAGAGGGCATTTGGATTGAGCACCCTTTTGCGGTACCATAAACTTGTGAAGATGCATTTGGATTGTGGAGATATCATAGGTTACGCACACACTGCCCCGTCGGGGCAGATGGATTTGAGCTTATGGGAACGGTTTTATCTCTTTGGTATTGGAACTTTGAATCTCAGGGAGCTTGATTACTGGCCACCACAAGATAAAGATGTTAATCAAAGGAGTCTATCCCTCCCAGCAGCTGGGCTGCTCCAAAAATGCATCACACTCAAAAAGTTGTTCATCCATGGAACGGCACATGAACATTTCATGATGTTCCTGCTTAGAATCCCAAACCTACGAGATGTACAGCTGAAAAAAGATTACTATCCGGCACCAAAGAATGACATGAGTACTGAAATGAGGTCAGACTCCTTGAGCCGCTTTGAAACGGCTTTAAACAAACGACAAATTTGTGATTGATGCAAGGAACATATTACATTGTTCAATTTCCATTGTTTAAGGTTTTATTCCTGATTCATTCAAGGAACAGGTACTGTTATGCAACTTCCCTATATGCCCCTGTTGTCATAGATTATATTCCTGCAATAGTATTGTTGTCATATTTAATATCCAGATTTTTTGTATAGTTTTACACATCAGTTAAATTACGCATTTTGAATAAAAAATATGATCAACTTTGGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575281" ref_strand="+" ref_description="SGN-U575281 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147810398|emb|CAN59822.1| (e_value=1e-57) hypothetical; (*ATH) AT2G42620.1 (e_value=1e-43) | Symbol: None | F-box family protein (ORE9), E3 ubiquitin ligase SCF complex F-box subunit; identical to F-box containing protein ORE9 GI:15420162 from (Arabidopsis thaliana) | chr2:17763217-17765545 FORWARD | Aliases: F14N22.11, F14N22_11; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=9e-43) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9; ">
      <seq>tcaaatggttcatcccacttctcttcaatgaaaaattgcactgtttatatcatacatattaacctccgtttaattcattactttcttcgttcatgtttgctgtttcacactcgaaatttgaaaaatgtcacgtaaattgagatacgaagagtcggaatagtaatatgtaaccagcatccaaacagagtgtagacacagctcactcacccagaaattctgcaattttgtcactgagaaaaacaccaaaatcgtccatctctcattcactcatcaacaagcttttttcttcttcttcttcaatggctactttagctagacccaccatcatcaatgaccttcctgatgtgatcctttctaacattatcgccgccgtctccgacgttcgcagccggaacaccgccgcacttgtctgccggaaatggctcgtccttgaacgagccacgagaacttccctcactctccgtggtaacatccgtgaccttttcatgttacccacttgcttccgatctgttacccatctcgacctctcactcgtttctccttggggacatcccctcctatctccacgcgccaccgcctccagcgacgatgctgattccgtcctcatcgcacacctcctccgccacgcttttcctatagttacttcgctcattgtctacgcacgtaacccacataccctccagtttttgccagttcagtggcctcaacttaagtatattaagcttgttcgttggcatcagaggcctcaattagctagtggggatgaattcaacttgctgtttcaaggatgcccgcaattgggttcgcttgatttatctactttttactgttggactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="63799" stop="62361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63499" g_stop="62661" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U575281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63499" e_stop="62661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTTCATCCCACTTCTCTTCAATGAAAAATTGCACTGTTTATATCATACATATTAACCTCCGTTTAATTCATTACTTTCTTCGTTCATGTTTGCTGTTTCACACTCGAAATTTGAAAAATGTCACGTAAATTGAGATACGAAGAGTCGGAATAGTAATATGTAACCAGCATCCAAACAGAGTGTAGACACAGCTCACTCACCCAGAAATTCTGCAATTTTGTCACTGAGAAAAACACCAAAATCGTCCATCTCTCATTCACTCATCAACAAGCTTTTTTCTTCTTCTTCTTCAATGGCTACTTTAGCTAGACCCACCATCATCAATGACCTTCCTGATGTGATCCTTTCTAACATTATCGCCGCCGTCTCCGACGTTCGCAGCCGGAACACCGCCGCACTTGTCTGCCGGAAATGGCTCGTCCTTGAACGAGCCACGAGAACTTCCCTCACTCTCCGTGGTAACATCCGTGACCTTTTCATGTTACCCACTTGCTTCCGATCTGTTACCCATCTCGACCTCTCACTCGTTTCTCCTTGGGGACATCCCCTCCTATCTCCACGCGCCACCGCCTCCAGCGACGATGCTGATTCCGTCCTCATCGCACACCTCCTCCGCCACGCTTTTCCTATAGTTACTTCGCTCATTGTCTACGCACGTAACCCACATACCCTCCAGTTTTTGCCAGTTCAGTGGCCTCAACTTAAGTATATTAAGCTTGTTCGTTGGCATCAGAGGCCTCAATTAGCTAGTGGGGATGAATTCAACTTGCTGTTTCAAGGATGCCCGCAATTGGGTTCGCTTGATTTATCTACTTTTTACTGTTGGACTGAT</genome_strand>
        <mrna_strand>TCAAATGGTTCATCCCACTTCTCTTCAATGAAAAATTGCACTGTTTATATCATACATATTAACCTCCGTTTAATTCATTACTTTCTTCGTTCATGTTTGCTGTTTCACACTCGAAATTTGAAAAATGTCACGTAAATTGAGATACGAAGAGTCGGAATAGTAATATGTAACCAGCATCCAAACAGAGTGTAGACACAGCTCACTCACCCAGAAATTCTGCAATTTTGTCACTGAGAAAAACACCAAAATCGTCCATCTCTCATTCACTCATCAACAAGCTTTTTTCTTCTTCTTCTTCAATGGCTACTTTAGCTAGACCCACCATCATCAATGACCTTCCTGATGTGATCCTTTCTAACATTATCGCCGCCGTCTCCGACGTTCGCAGCCGGAACACCGCCGCACTTGTCTGCCGGAAATGGCTCGTCCTTGAACGAGCCACGAGAACTTCCCTCACTCTCCGTGGTAACATCCGTGACCTTTTCATGTTACCCACTTGCTTCCGATCTGTTACCCATCTCGACCTCTCACTCGTTTCTCCTTGGGGACATCCCCTCCTATCTCCACGCGCCACCGCCTCCAGCGACGATGCTGATTCCGTCCTCATCGCACACCTCCTCCGCCACGCTTTTCCTATAGTTACTTCGCTCATTGTCTACGCACGTAACCCACATACCCTCCAGTTTTTGCCAGTTCAGTGGCCTCAACTTAAGTATATTAAGCTTGTTCGTTGGCATCAGAGGCCTCAATTAGCTAGTGGGGATGAATTCAACTTGCTGTTTCAAGGATGCCCGCAATTGGGTTCGCTTGATTTATCTACTTTTTACTGTTGGACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602696" ref_strand="+" ref_description="SGN-U602696 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagcatcgacatattatcttttatcaatctgtatgtgcgagtctatgttagcttgtatttttgtatcacaaataaatacaagcgatataagagcggataatacaagagatatagaacgtataagaccctatgtattaaaaacaatttgtatagtcatgtagttttgtaccacaacaaacaaaataagaacaaagtattacaagtgatacaacttgtatcagcctgtatgtatataatacaatctgtatttttgtatttatgttttgcgaatgaagatacacaacacaaaagtgatacaactatatcaacatgtatatatcaaatacaacttgcaatgctacatgttgaatcaatacaagaacaaataaatacaagtgatacaacatgtattaatggaatacgatatgtgtcagactatactcgttaatgcatatttattatttcttttctaaatctcgctcgcctcggtccaaatgttgctgaaaggcccaaaaacatctttgattctcaaaacgggagtttgggcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="73654" stop="74781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73952" g_stop="74481" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U602696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73952" e_stop="74481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCGACATATTATCTTTTATCAATCTGTATGTGCGAGTCTATGTTAGCTTGTATTTTTGTATCACAAATAAATACAAGCGATATAAGAGCGGATAATACAAGAGATATAGAACGTATAAGACCCTATGTATTAAAAACAATTTGTATAGTCATGTAGTTTTGTACCACAACAAACAAAATAAGAACAAAGTATTACAAGTGATACAACTTGTATCAGCCTGTATGTATATAATACAATCTGTATTTTTGTATTTATGTTTTGCGAATGAAGATACACAACACAAAAGTGATACAACTATATCAACATGTATATATCAAATACAACTTGCAATGCTACATGTTGAATCAATACAAGAACAAATAAATACAAGTGATACAACATGTATTAATGGAATACGATATGTGTCAGACTATACTCGTTAATGCATATTTATTATTTCTTTTCTAAATCTCGCTCGCCTCGGTCCAAATGTTGCTGAAAGGCCCAAAAACATCTTTGATTCTCAAAACGGGAGTTTGGGCTTAA</genome_strand>
        <mrna_strand>CAGCATCGACATATTATCTTTTATCAATCTGTATGTGCGAGTCTATGTTAGCTTGTATTTTTGTATCACAAATAAATACAAGCGATATAAGAGCGGATAATACAAGAGATATAGAACGTATAAGACCCTATGTATTAAAAACAATTTGTATAGTCATGTAGTTTTGTACCACAACAAACAAAATAAGAACAAAGTATTACAAGTGATACAACTTGTATCAGCCTGTATGTATATAATACAATCTGTATTTTTGTATTTATGTTTTGCGAATGAAGATACACAACACAAAAGTGATACAACTATATCAACATGTATATATCAAATACAACTTGCAATGCTACATGTTGAATCAATACAAGAACAAATAAATACAAGTGATACAACATGTATTAATGGAATACGATATGTGTCAGACTATACTCGTTAATGCATATTTATTATTTCTTTTCTAAATCTCGCTCGCCTCGGTCCAAATGTTGCTGAAAGGCCCAAAAACATCTTTGATTCTCAAAACGGGAGTTTGGGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582576" ref_strand="+" ref_description="SGN-U582576 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|18149189|dbj|BAB83610.1| (e_value=2e-99) 6b-interacting protein 1 [Nicotiana tabacum]; (*ATH) AT3G58630.1 (e_value=1e-52) | Symbol: None | expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 | chr3:21694545-21696918 REVERSE | Aliases: F14P22.220; ">
      <seq>cgcatttttgtcgatgtaccgtcgacctaatcacactgattacttctcaccctctattcatcttctaaccctaattcctccaccaccgttcaacaatccaattacgccatcgccgcctcctcaccgtcttctccgatgtccgacgacgatctcgtcgccagtccatcctcgaataacaattctccgtcgccgtctccatcgcctccaccgtcttctgtaaagaatgaactagcaactcttcctccgccaccgatgatcccgccggcgtcgactcgtccggctgcatttccggctcgcgaggactgttggtcggaggcggcgactcatactctgatcgaagcgtggggttctctctatgtggagctgaagcgcggtaatctccggcagaagcactggcaggaggtggctaacgccgttaacaaacttcacggcaacacgaagaagcaatttcgcaccgatatacagtgcaaaaaccgcattgatacattgaagaagaagtacaagatcgagaaagctagggtttctcaatcgcacagtcggtatgtcccgcagtggccatttttcaacagcctcgacgtcctgatcggcgataatttcaaaccatcgccgttgccggtgacggtcgctcctcgacggaagacacctccgttgcttcctcctccaacttccgccgttccggttggtccacggtcaaagaggccggcggcagtcatggaggacgtcgtttcccggagaaatttctctgctatggctgcagctgcagctgctgctgcctccgaggattcagacgaagaggaggaatcggaaacttcaagtccggcgacatttactgccagtgctccaagtaggaggaaggagagtggggcattggcagagggttgtagcaggttagctgaagcaataggaaggcttgccgagatatacgaacgagttgaagatgctaagcagaggcaaatggtggaattacagaagcaaagaatgcagcttgcaaaggatttggagattcaaagaatgaaacttattatggagtcacaagttcagctttgaaagcttaaacgcgcgaagaacagttcacaagctggtgagtgactatgtattcctagtgggagatttgctgtttctttcatggggtttgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="74258" stop="75998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74558" g_stop="75698" g_length="1141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1141" r_length="1141" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U582576" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1141</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74558" e_stop="75698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTTTGTCGATGTACCGTCGACCTAATCACACTGATTACTTCTCACCCTCTATTCATCTTCTAACCCTAATTCCTCCACCACCGTTCAACAATCCAATTACGCCATCGCCGCCTCCTCACCGTCTTCTCCGATGTCCGACGACGATCTCGTCGCCAGTCCATCCTCGAATAACAATTCTCCGTCGCCGTCTCCATCGCCTCCACCGTCTTCTGTAAAGAATGAACTAGCAACTCTTCCTCCGCCACCGATGATCCCGCCGGCGTCGACTCGTCCGGCTGCATTTCCGGCTCGCGAGGACTGTTGGTCGGAGGCGGCGACTCATACTCTGATCGAAGCGTGGGGTTCTCTCTATGTGGAGCTGAAGCGCGGTAATCTCCGGCAGAAGCACTGGCAGGAGGTGGCTAACGCCGTTAACAAACTTCACGGCAACACGAAGAAGCAATTTCGCACCGATATACAGTGCAAAAACCGCATTGATACATTGAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCTCAATCGCACAGTCGGTATGTCCCGCAGTGGCCATTTTTCAACAGCCTCGACGTCCTGATCGGCGATAATTTCAAACCATCGCCGTTGCCGGTGACGGTCGCTCCTCGACGGAAGACACCTCCGTTGCTTCCTCCTCCAACTTCCGCCGTTCCGGTTGGTCCACGGTCAAAGAGGCCGGCGGCAGTCATGGAGGACGTCGTTTCCCGGAGAAATTTCTCTGCTATGGCTGCAGCTGCAGCTGCTGCTGCCTCCGAGGATTCAGACGAAGAGGAGGAATCGGAAACTTCAAGTCCGGCGACATTTACTGCCAGTGCTCCAAGTAGGAGGAAGGAGAGTGGGGCATTGGCAGAGGGTTGTAGCAGGTTAGCTGAAGCAATAGGAAGGTTTGCCGAGATATACGAACGAGTTGAAGATGCTAAGCAGAGGCAAATGGTGGAATTAGAGAAGCAAAGAATGCAGTTTGCAAAGGATTTGGAGATTCAAAGAATGAAACTTATTATGGAGTCACAAGTTCAGCTTGAAAAGCTTAAACGCGCGAAGAACAGTTCACAAGCTGGTGAGTGACTATGTATTCCTAGTGGAGAATTTGCTGTTTCTTTCATTGTGTTTGATTTTT</genome_strand>
        <mrna_strand>CGCATTTTTGTCGATGTACCGTCGACCTAATCACACTGATTACTTCTCACCCTCTATTCATCTTCTAACCCTAATTCCTCCACCACCGTTCAACAATCCAATTACGCCATCGCCGCCTCCTCACCGTCTTCTCCGATGTCCGACGACGATCTCGTCGCCAGTCCATCCTCGAATAACAATTCTCCGTCGCCGTCTCCATCGCCTCCACCGTCTTCTGTAAAGAATGAACTAGCAACTCTTCCTCCGCCACCGATGATCCCGCCGGCGTCGACTCGTCCGGCTGCATTTCCGGCTCGCGAGGACTGTTGGTCGGAGGCGGCGACTCATACTCTGATCGAAGCGTGGGGTTCTCTCTATGTGGAGCTGAAGCGCGGTAATCTCCGGCAGAAGCACTGGCAGGAGGTGGCTAACGCCGTTAACAAACTTCACGGCAACACGAAGAAGCAATTTCGCACCGATATACAGTGCAAAAACCGCATTGATACATTGAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCTCAATCGCACAGTCGGTATGTCCCGCAGTGGCCATTTTTCAACAGCCTCGACGTCCTGATCGGCGATAATTTCAAACCATCGCCGTTGCCGGTGACGGTCGCTCCTCGACGGAAGACACCTCCGTTGCTTCCTCCTCCAACTTCCGCCGTTCCGGTTGGTCCACGGTCAAAGAGGCCGGCGGCAGTCATGGAGGACGTCGTTTCCCGGAGAAATTTCTCTGCTATGGCTGCAGCTGCAGCTGCTGCTGCCTCCGAGGATTCAGACGAAGAGGAGGAATCGGAAACTTCAAGTCCGGCGACATTTACTGCCAGTGCTCCAAGTAGGAGGAAGGAGAGTGGGGCATTGGCAGAGGGTTGTAGCAGGTTAGCTGAAGCAATAGGAAGGCTTGCCGAGATATACGAACGAGTTGAAGATGCTAAGCAGAGGCAAATGGTGGAATTACAGAAGCAAAGAATGCAGCTTGCAAAGGATTTGGAGATTCAAAGAATGAAACTTATTATGGAGTCACAAGTTCAGCTTTGAAAGCTTAAACGCGCGAAGAACAGTTCACAAGCTGGTGAGTGACTATGTATTCCTAGTGGGAGATTTGCTGTTTCTTTCATGGGGTTTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588135" ref_strand="+" ref_description="SGN-U588135 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gatctgaagatatctatgaggtaacatatgttgcaatcacatatattattaagtgatggcgaagtttccttatacaataaggattcgagaaagtagagagtctttgaaaacaaatgtggttctccacaaagtacaccggatcttctatgcagactgcaatatactagacatagaggcaatcactcttcatattcggactttacactcatcaaaagctatctaactcctctccttccatcaaatccacataagtactactgtggcaaaatcccatgctctatgaaactactcgtgcttacataaggctcagttgtgcaacaccatctttattgtttgacttcgacttgccaatctcccagctgctgaacaaaatctttcttggataggtaggtgtatcatgtgttgggaatcagctcctgagtgcttatacaagttcaggcagaatgtcttattctacatcagtgagttatgtaagtaaactgatgacatgacagccttttgaaccaagtatgctctctctcacttttttaatcattgctcatgtaaaattctgatctgatgtgccaacagcgaaatcaaatgatccataaatcacattatcactagagtttcttatcatcctgaggcttagaagattctttgaccgactgttggctacacttgagattatcttcgcttttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="75969" stop="77249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76269" g_stop="76949" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U588135" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76269" e_stop="76949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGAAGATATATATAAGGTAACATATGTTGCAATCACATATATTATTAATTGATGGCGAAGTTTCCTTATACAAGAAGTATTCGAGAAAGTAGAGAGTCTTTCAAAACAAATGTGGTTCTCCACAAAGTACACCGGATCTTCTATGCAGACTGCAATATACTAGAAATAGAGGCTATTACTCTTCAAATTCGGACTTTACACTCATCAAAAGCTATCTAACTCCTCTCCTTCCATCAAATCCACGTAAGTACTAGTGTGGCAAAAGCCCATGCTCTATGAAATTACTCGTGCTTACAT-AGGCTCAGTTGTGCAACACCATCTTTATTGTTTGACTTCGACTTGCCAATCTCAAAGCTGCTGAACAAAATCTTTCTTGGATAGTTGGGTGTATCATGTGTTGGGAATCAGCTTCTGAGTGCTTATACAAGTTCAGGCAGTAGGTCTTATTCTACATCAGTTAGTTATTTAAGTAAACTGTTTAGATGACAGCCTTTTGAACCAAGTATGC-GTCTCTCACTTTTTTAATCATTCGTTATGTAAAATTCTTATCTTATTAGCCAATAATGAAATAAAATGATCCATAAACCAAATTATCACTTGAGTTTCTTTTCATCCTGAGGCTTAGAAGATTCTTTGACCAACTGTTGGCTACTCTTGAGATTATCTTCTCTTTTGGC</genome_strand>
        <mrna_strand>GATCTGAAGATATCTATGAGGTAACATATGTTGCAATCACATATATTATTAAGTGATGGCGAAGTTTCCTTATACAATAAGGATTCGAGAAAGTAGAGAGTCTTTGAAAACAAATGTGGTTCTCCACAAAGTACACCGGATCTTCTATGCAGACTGCAATATACTAGACATAGAGGCAATCACTCTTCATATTCGGACTTTACACTCATCAAAAGCTATCTAACTCCTCTCCTTCCATCAAATCCACATAAGTACTACTGTGGCAAAATCCCATGCTCTATGAAACTACTCGTGCTTACATAAGGCTCAGTTGTGCAACACCATCTTTATTGTTTGACTTCGACTTGCCAATCTCCCAGCTGCTGAACAAAATCTTTCTTGGATAGGTAGGTGTATCATGTGTTGGGAATCAGCTCCTGAGTGCTTATACAAGTTCAGGCAGAATGTCTTATTCTACATCAGTGAGTTATGTAAGTAAACTGATGACATGACAGCCTTTTGAACCAAGTATGCTCTCTCTCACTTTTTTAATCATTGCTCATGTAAAATTCTGATCTGATGTGCCAACAGCGAAATCAAATGATCCATAAATCACATTATCACTAGAGTTTCTTATCATCCTGAGGCTTAGAAGATTCTTTGACCGACTGTTGGCTACACTTGAGATTATCTTCGCTTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588136" ref_strand="+" ref_description="SGN-U588136 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gatctgaagatatatataaggtaacatatgttgcaatcacatatattattaattgatggcgaagtttccttatacaagaagtattcgagaaagtagagagtctttcaaaacaaatgtggttctccacaaagtacaccggatcttctatgcagactgcaatatactagaaatagaggctattactcttcaaattcggactttacactcatcaaaagctatctaactcctctccttccatcaaatccacgtaagtactagtgtggcaaaagcccatgctctatgaaattactcgtgcttacataggctcagttgtgcaacaccatctttattgtttgacttcgacttgccaatctcaaagctgctgaacaaaatctttcttggatagttgggtgtatcatgtgttgggaatcagcttctgagtgcttatacaagttcaggcagtaggtcttattctacatcagttagttatttaagtaaactgtttagatgacagccttttgaaccaagtatgcgtctctcacttttttaatcattcgttatgtaaaattcttatcttattagccaataatgaaataaaatgatccataaaccaaattatcacttgagtttcttttcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="+" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="75969" stop="77188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76269" g_stop="76888" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="+" ref_id="SGN-U588136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76269" e_stop="76888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGAAGATATATATAAGGTAACATATGTTGCAATCACATATATTATTAATTGATGGCGAAGTTTCCTTATACAAGAAGTATTCGAGAAAGTAGAGAGTCTTTCAAAACAAATGTGGTTCTCCACAAAGTACACCGGATCTTCTATGCAGACTGCAATATACTAGAAATAGAGGCTATTACTCTTCAAATTCGGACTTTACACTCATCAAAAGCTATCTAACTCCTCTCCTTCCATCAAATCCACGTAAGTACTAGTGTGGCAAAAGCCCATGCTCTATGAAATTACTCGTGCTTACATAGGCTCAGTTGTGCAACACCATCTTTATTGTTTGACTTCGACTTGCCAATCTCAAAGCTGCTGAACAAAATCTTTCTTGGATAGTTGGGTGTATCATGTGTTGGGAATCAGCTTCTGAGTGCTTATACAAGTTCAGGCAGTAGGTCTTATTCTACATCAGTTAGTTATTTAAGTAAACTGTTTAGATGACAGCCTTTTGAACCAAGTATGCGTCTCTCACTTTTTTAATCATTCGTTATGTAAAATTCTTATCTTATTAGCCAATAATGAAATAAAATGATCCATAAACCAAATTATCACTTGAGTTTCTTTTCATCCT</genome_strand>
        <mrna_strand>GATCTGAAGATATATATAAGGTAACATATGTTGCAATCACATATATTATTAATTGATGGCGAAGTTTCCTTATACAAGAAGTATTCGAGAAAGTAGAGAGTCTTTCAAAACAAATGTGGTTCTCCACAAAGTACACCGGATCTTCTATGCAGACTGCAATATACTAGAAATAGAGGCTATTACTCTTCAAATTCGGACTTTACACTCATCAAAAGCTATCTAACTCCTCTCCTTCCATCAAATCCACGTAAGTACTAGTGTGGCAAAAGCCCATGCTCTATGAAATTACTCGTGCTTACATAGGCTCAGTTGTGCAACACCATCTTTATTGTTTGACTTCGACTTGCCAATCTCAAAGCTGCTGAACAAAATCTTTCTTGGATAGTTGGGTGTATCATGTGTTGGGAATCAGCTTCTGAGTGCTTATACAAGTTCAGGCAGTAGGTCTTATTCTACATCAGTTAGTTATTTAAGTAAACTGTTTAGATGACAGCCTTTTGAACCAAGTATGCGTCTCTCACTTTTTTAATCATTCGTTATGTAAAATTCTTATCTTATTAGCCAATAATGAAATAAAATGATCCATAAACCAAATTATCACTTGAGTTTCTTTTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565296" ref_strand="+" ref_description="SGN-U565296 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gagggtctggcttaggcaaatcactttacacagaaataagttacaaactctttttcaagtctcaaagaaaaagtacattaaaaatcaagcctaaaactagtatctaccgctcatcttcaataaaaatagtatactcttggcaaggtttaaccaaaatatatgtatcacctccaaaagattcggggaaaaaatgcactcttctactcaacattccttgtacaagaaaccatctgctcataaaaatagcaactcatgaacttcttatcaaaggaatttcaagctaacatcaagagagtagcaattaatacctgataatggcacattacaggctttatgtaatatttagaaggtacgaaaaggcaacaaaaatgaaaggattctctacttctcgagaaactttcaagtatttaggagctagagtgcaccagcagagcttctcaataaccttccctttaccaaagtggagcaaaagttaagaaacactttaccactaaccctatcgactgctaattccataattagagctcaacagtcataatttcctcgacggaagtaaagaaggagcaaatggtaatttaaaataatagagtaatgaagctttcttcacacaactgaactattatagtttctataagcgtcatggtccacggagatgcacatttatgacagagcaaatatatttgtttaatgcaacaaaaagttctgcacatagacacaagcattgcatctttactgttcttattagccatcctgtgaagcttaaactaagtgttattctaaggatatagatcatagaccaatcgcagatctctagtggcatcataagattttcttgcagtaactagatcaacaattcttcaggaatgtaaatagatagtctcaagatcataacaatgatgttccggaatacatcagtaagtgactattttcattttaaattcaatctgttcaagagatgtcaacacaaaatgtttcagtaacaatattcttcaaaaaagtccaatggcaattttaagagagagtaacaaaaatgcaacatgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210E10-E5dtp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210E10.1" temp_strand="-" temp_description="C12HBa0210E10.1  AC236047.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0210E10 upload_account_name:italy">
        <position start="78495" stop="76851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78195" g_stop="77151" g_length="1045"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1045" r_length="1045" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210E10.1" gen_strand="-" ref_id="SGN-U565296" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1045</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78195" e_stop="77151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTCTGGCTTAGGCAAATCACTTTACACAGAAATAAGTTACAAACTCTTTTTCAAGTCTCAAAGAAAAAGTACATTAAAAATCAAGCCTAAAACTAGTATCTACCGCTCATCTTCAATAAAACTAGTATACTCTTGGCAAGGTTTAACCAAAATATATGTATCACCTCCGAAAGATTCGTGGAAAAAATGCACTCTTCTACTCAACATTCCTTGTACAAGTAACCATCTGCTCATAAAAATAGCAACTCATGAACTTCTTATCAAAGGAATTTCAAGCTAACATCCAGAGAGTAGCAATTAGTACATGATAATGGCACATTACAGGCTTTATGTAATATTTAGAAGGTACGAAAAGGCAACAAAAATGAAAGGATTCTCTACTTCTCGAGAAACTTTCAAGTATTTAGGAGCTAGAGTGCACCAGCAGAGCTTCTCAATAACCTTCCCTTTACCAAAGTGGAGCAAAAGTTAAGAAACACTTTACCACTAACCCTATCGACTGCTAATTCCATAATTAGAGCTCAACAGTCATAATTTCCTCGACGGAAGTAAAGAAGGAGCAAATGGTAATTTAAAATAATAGAGTAATGAAGCTTTCTTCACACAACTGAACTATTATAGTTTCTATAAGCGTCATGGTCCACGGAGATGCACATTTATGACAGAGCAAATATATTTGTTTAATGCAACAAAAAGTTCTGCACATAGACACAAGCATTGCATCTTTACTGTTCTTATTAGCCATCCTGTGAAGCTTAAACTAAGTGTTATTCTAAGGATATAGATCATAGACCAATCGCAGATCTCTAGTGGCATCATAAGATTTTCTTGCAGTAACTAGATCAACAATTCTTCAGGAATGTAAATAGATAGTCTCAAGATCATAACAATGATGTTCCGGAATACATCAGTAAGTGACTATTTTCATTTTAAATTCAATCTGTTCAAGAGATGTCAACACAAAATGTTTCAGTAACAATATTCTTCAAAAAAGTCCAATGGCAATTTTAAGAGAGAGTAACAAAAATGCAACATGCATAC</genome_strand>
        <mrna_strand>GAGGGTCTGGCTTAGGCAAATCACTTTACACAGAAATAAGTTACAAACTCTTTTTCAAGTCTCAAAGAAAAAGTACATTAAAAATCAAGCCTAAAACTAGTATCTACCGCTCATCTTCAATAAAAATAGTATACTCTTGGCAAGGTTTAACCAAAATATATGTATCACCTCCAAAAGATTCGGGGAAAAAATGCACTCTTCTACTCAACATTCCTTGTACAAGAAACCATCTGCTCATAAAAATAGCAACTCATGAACTTCTTATCAAAGGAATTTCAAGCTAACATCAAGAGAGTAGCAATTAATACCTGATAATGGCACATTACAGGCTTTATGTAATATTTAGAAGGTACGAAAAGGCAACAAAAATGAAAGGATTCTCTACTTCTCGAGAAACTTTCAAGTATTTAGGAGCTAGAGTGCACCAGCAGAGCTTCTCAATAACCTTCCCTTTACCAAAGTGGAGCAAAAGTTAAGAAACACTTTACCACTAACCCTATCGACTGCTAATTCCATAATTAGAGCTCAACAGTCATAATTTCCTCGACGGAAGTAAAGAAGGAGCAAATGGTAATTTAAAATAATAGAGTAATGAAGCTTTCTTCACACAACTGAACTATTATAGTTTCTATAAGCGTCATGGTCCACGGAGATGCACATTTATGACAGAGCAAATATATTTGTTTAATGCAACAAAAAGTTCTGCACATAGACACAAGCATTGCATCTTTACTGTTCTTATTAGCCATCCTGTGAAGCTTAAACTAAGTGTTATTCTAAGGATATAGATCATAGACCAATCGCAGATCTCTAGTGGCATCATAAGATTTTCTTGCAGTAACTAGATCAACAATTCTTCAGGAATGTAAATAGATAGTCTCAAGATCATAACAATGATGTTCCGGAATACATCAGTAAGTGACTATTTTCATTTTAAATTCAATCTGTTCAAGAGATGTCAACACAAAATGTTTCAGTAACAATATTCTTCAAAAAAGTCCAATGGCAATTTTAAGAGAGAGTAACAAAAATGCAACATGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5586" PGL_stop="12921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5586" e_stop="6012"/>
            <exon e_start="6805" e_stop="6985"/>
            <exon e_start="7372" e_stop="7457"/>
            <exon e_start="8252" e_stop="8356"/>
            <exon e_start="9540" e_stop="9602"/>
            <exon e_start="9711" e_stop="9820"/>
            <exon e_start="10057" e_stop="10176"/>
            <exon e_start="10247" e_stop="10322"/>
            <exon e_start="10455" e_stop="10528"/>
            <exon e_start="10620" e_stop="10740"/>
            <exon e_start="12083" e_stop="12180"/>
            <exon e_start="12260" e_stop="12383"/>
            <exon e_start="12547" e_stop="12921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.683" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5586" e_stop="6012" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6013" i_stop="6804" i_length="792"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6805" e_stop="6985" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6986" i_stop="7371" i_length="386"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7372" e_stop="7457" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7458" i_stop="8251" i_length="794"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8252" e_stop="8356" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8357" i_stop="9539" i_length="1183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9540" e_stop="9602" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9603" i_stop="9710" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9711" e_stop="9820" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.984">
            <gDNA_intron_boundary i_start="9821" i_stop="10056" i_length="236"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10057" e_stop="10176" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10177" i_stop="10246" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10247" e_stop="10322" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10323" i_stop="10454" i_length="132"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10455" e_stop="10528" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="10529" i_stop="10619" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10620" e_stop="10740" e_length="121"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10741" i_stop="12082" i_length="1342"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="12083" e_stop="12180" e_length="98"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12181" i_stop="12259" i_length="79"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="12260" e_stop="12383" e_length="124"/>
          </exon>
          <intron i_serial="12" don_prob="0.926" acc_prob="0.683">
            <gDNA_intron_boundary i_start="12384" i_stop="12546" i_length="163"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="12547" e_stop="12921" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6012"/>
              <exon start="6805" stop="6985"/>
              <exon start="7372" stop="7457"/>
              <exon start="8252" stop="8356"/>
              <exon start="9540" stop="9602"/>
              <exon start="9711" stop="9820"/>
              <exon start="10057" stop="10176"/>
              <exon start="10247" stop="10322"/>
              <exon start="10455" stop="10528"/>
              <exon start="10620" stop="10740"/>
              <exon start="12083" stop="12180"/>
              <exon start="12260" stop="12383"/>
              <exon start="12547" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10138" stop="10176"/>
              <exon start="10247" stop="10322"/>
              <exon start="10455" stop="10528"/>
              <exon start="10620" stop="10682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCCAGTAATTCACCACAAATTACTAATCAATGTTGAATTTGCAGAAAACAAAGATCAATAAATTCACACAAATATAAATAAACAACGAAACACAAAATCAAATTCATTTCTATTTTCTAAAATCAAACATAGAAAAAAAATTAAAAATTCTAAGAAAAAGCATTTTCATGGAGAACGGAAATTCTTCATCAGTTGCTCGAGGGAGATTAGCGGTGCTTTCAGCTCATCTCGCAGCATCACTCAACGTTTCCGATTTAACAACCTTTAAACTTCTAGAAACTTCCGGTGTATCTTCCGTTTCCGGCGTCGAACCTCCGCGGAATCTAAAAGGTGCGTTGACGATCATCGATGAACGGACCGGTAAGAAGTATCCGGTTCAGGTTTCTGAGGATGGCACTATCAAAGCCAACGACTTGAAGAAG : ATAACAACAGGACAGAATGATAAGGGTCTTAAGCTTTATGATCCAGGCTATCTCAACACGGCACCTGTTAGGTCATCAATATGTTATATTGATGGTGATGCCGGGATCCTTAGATATCGAGGCTACCCTATTGAAGAGCTGGCCGAGGGAAGTTCCTTCTTGGAAGTGGCATATCTTTTGT : TGTATGGTAATTTACCATCTGAGAATCAGTTAGCAGACTGGGAGTTCACAGTTTCACAGCATTCAGCAGTTCCACAAGGACTCTTG : GATATCATACAGTCAATGCCACATGATGCTCATCCAATGGGGGTTCTTGTCAGTGCAATGAGTGCTCTTTCCGTTTTTCATCCTGATGCAAATCCAGCTCTGAGA : GGGCAGGATATATACAAGTCTAAACAAGTGAGAGATAAACAAATAGTTCGGATCCTTGGCAAG : GCACCTACAATTGCTACAGCTGCTTACTTAAGAATGGCTGGCAGGCCACCTGTCCTTCCATCCAACAATCTCTCATATGCGGAGAACTTCTTGTACATGCTAGATTCATT : AGGTAATAGGTCTTACAAACCCAATCCTCGACTTGCTCGTGTGCTCGATATTCTTTTCATATTACATGCAGAACATGAGATGAATTGCTCTACAGCTGCGGCACGTCATCTTGCTTCAAG : TGGGGTTGATGTATACACAGCAATAGCAGGAGCTGTGGGAGCTTTGTATGGCCCTCTCCATGGGGGTGCCAATGAG : GCTGTGCTGAAAATGCTCAGTGAGATTGGAAGTGTTGAAAATATTCCAGAGTTCCTTGAGGGTGTCAAGAACAG : GAAACGAAAGATGTCTGGTTTTGGGCACCGTGTCTACAAAAACTATGATCCCAGAGCAAAAGTCATCAAGACGCTGGCCGATGAAGTATTTTCTATTGTGGGTCGTGATCCTTTAATTGAG : GTTGCTGTTGCTCTGGAAAAAGCTGCACTCTCAGATGAGTACTTTGTAAAACGGAAGCTGTATCCAAACGTTGATTTCTACTCTGGTTTAATTTACAG : GGCAATGGGATTTCCAACAGAATTCTTTCCTGTCTTGTTTGCAATTCCTCGGATGGCCGGTTACTTGTCTCATTGGAATGAGTCCCTTGATGATCCTGATACCAAGATTATGAGACCCGCACAG : GTGTATACTGGTGTATGGATGCGTCACTATATGCCTCTCAAAGAACGATCACCACATTCCGAAGCAGACAAGCTCGGTCACGTCTCCGTCTCCAACGCCACCAAACGACGATTGGCTGGTTCAGGGGCCTGAGGCTTCCTTCAAGGTTCACTCATATTTAATATAAGAAAAATAAATGATGGTATTTTTTTTTCTTCTCTATGAGGATTAAACTTGTCTAGATTCTCACATACTCAAAAGCAGATGTATTCGGATGAAGTTTTATTTCTCCGTTTCTAAAAATAACTTAGTAAACTTTTAGTGTGTCCTAGTCCTACAATGATGCGGAGTGTACCTAATTATAGTAACTTTTAAACTTAAAACTAGTCCTTATAT</gDNA_template>
            <first_frame> I  F  P  V  I  H  H  K  L  L  I  N  V  E  F  A  E  N  K  D  Q  *  I  H  T  N  I  N  K  Q  R  N  T  K  S  N  S  F  L  F  S  K  I  K  H  R  K  K  I  K  N  S  K  K  K  H  F  H  G  E  R  K  F  F  I  S  C  S  R  E  I  S  G  A  F  S  S  S  R  S  I  T  Q  R  F  R  F  N  N  L  *  T  S  R  N  F  R  C  I  F  R  F  R  R  R  T  S  A  E  S  K  R  C  V  D  D  H  R  *  T  D  R  *  E  V  S  G  S  G  F  *  G  W  H  Y  Q  S  Q  R  L  E  E   : D  N  N  R  T  E  *  *  G  S  *  A  L  *  S  R  L  S  Q  H  G  T  C  *  V  I  N  M  L  Y  *  W  *  C  R  D  P  *  I  S  R  L  P  Y  *  R  A  G  R  G  K  F  L  L  G  S  G  I  S  F  V :   V  W  *  F  T  I  *  E  S  V  S  R  L  G  V  H  S  F  T  A  F  S  S  S  T  R  T  L   : G  Y  H  T  V  N  A  T  *  C  S  S  N  G  G  S  C  Q  C  N  E  C  S  F  R  F  S  S  *  C  K  S  S  S  E   : R  A  G  Y  I  Q  V  *  T  S  E  R  *  T  N  S  S  D  P  W  Q   : G  T  Y  N  C  Y  S  C  L  L  K  N  G  W  Q  A  T  C  P  S  I  Q  Q  S  L  I  C  G  E  L  L  V  H  A  R  F  I  :  R  *  *  V  L  Q  T  Q  S  S  T  C  S  C  A  R  Y  S  F  H  I  T  C  R  T  *  D  E  L  L  Y  S  C  G  T  S  S  C  F  K  :  W  G  *  C  I  H  S  N  S  R  S  C  G  S  F  V  W  P  S  P  W  G  C  Q  *   : G  C  A  E  N  A  Q  *  D  W  K  C  *  K  Y  S  R  V  P  *  G  C  Q  E  Q  :  E  T  K  D  V  W  F  W  A  P  C  L  Q  K  L  *  S  Q  S  K  S  H  Q  D  A  G  R  *  S  I  F  Y  C  G  S  *  S  F  N  *   : G  C  C  C  S  G  K  S  C  T  L  R  *  V  L  C  K  T  E  A  V  S  K  R  *  F  L  L  W  F  N  L  Q  :  G  N  G  I  S  N  R  I  L  S  C  L  V  C  N  S  S  D  G  R  L  L  V  S  L  E  *  V  P  *  *  S  *  Y  Q  D  Y  E  T  R  T   : G  V  Y  W  C  M  D  A  S  L  Y  A  S  Q  R  T  I  T  T  F  R  S  R  Q  A  R  S  R  L  R  L  Q  R  H  Q  T  T  I  G  W  F  R  G  L  R  L  P  S  R  F  T  H  I  *  Y  K  K  N  K  *  W  Y  F  F  F  F  S  M  R  I  K  L  V  *  I  L  T  Y  S  K  A  D  V  F  G  *  S  F  I  S  P  F  L  K  I  T  *  *  T  F  S  V  S  *  S  Y  N  D  A  E  C  T  *  L  *  *  L  L  N  L  K  L  V  L  I  </first_frame>
            <second_frame>  F  S  Q  *  F  T  T  N  Y  *  S  M  L  N  L  Q  K  T  K  I  N  K  F  T  Q  I  *  I  N  N  E  T  Q  N  Q  I  H  F  Y  F  L  K  S  N  I  E  K  K  L  K  I  L  R  K  S  I  F  M  E  N  G  N  S  S  S  V  A  R  G  R  L  A  V  L  S  A  H  L  A  A  S  L  N  V  S  D  L  T  T  F  K  L  L  E  T  S  G  V  S  S  V  S  G  V  E  P  P  R  N  L  K  G  A  L  T  I  I  D  E  R  T  G  K  K  Y  P  V  Q  V  S  E  D  G  T  I  K  A  N  D  L  K  K  :  I  T  T  G  Q  N  D  K  G  L  K  L  Y  D  P  G  Y  L  N  T  A  P  V  R  S  S  I  C  Y  I  D  G  D  A  G  I  L  R  Y  R  G  Y  P  I  E  E  L  A  E  G  S  S  F  L  E  V  A  Y  L  L   : L  Y  G  N  L  P  S  E  N  Q  L  A  D  W  E  F  T  V  S  Q  H  S  A  V  P  Q  G  L  L  :  D  I  I  Q  S  M  P  H  D  A  H  P  M  G  V  L  V  S  A  M  S  A  L  S  V  F  H  P  D  A  N  P  A  L  R  :  G  Q  D  I  Y  K  S  K  Q  V  R  D  K  Q  I  V  R  I  L  G  K  :  A  P  T  I  A  T  A  A  Y  L  R  M  A  G  R  P  P  V  L  P  S  N  N  L  S  Y  A  E  N  F  L  Y  M  L  D  S  L :   G  N  R  S  Y  K  P  N  P  R  L  A  R  V  L  D  I  L  F  I  L  H  A  E  H  E  M  N  C  S  T  A  A  A  R  H  L  A  S  S :   G  V  D  V  Y  T  A  I  A  G  A  V  G  A  L  Y  G  P  L  H  G  G  A  N  E  :  A  V  L  K  M  L  S  E  I  G  S  V  E  N  I  P  E  F  L  E  G  V  K  N  R :   K  R  K  M  S  G  F  G  H  R  V  Y  K  N  Y  D  P  R  A  K  V  I  K  T  L  A  D  E  V  F  S  I  V  G  R  D  P  L  I  E  :  V  A  V  A  L  E  K  A  A  L  S  D  E  Y  F  V  K  R  K  L  Y  P  N  V  D  F  Y  S  G  L  I  Y  R :   A  M  G  F  P  T  E  F  F  P  V  L  F  A  I  P  R  M  A  G  Y  L  S  H  W  N  E  S  L  D  D  P  D  T  K  I  M  R  P  A  Q  :  V  Y  T  G  V  W  M  R  H  Y  M  P  L  K  E  R  S  P  H  S  E  A  D  K  L  G  H  V  S  V  S  N  A  T  K  R  R  L  A  G  S  G  A  *  G  F  L  Q  G  S  L  I  F  N  I  R  K  I  N  D  G  I  F  F  S  S  L  *  G  L  N  L  S  R  F  S  H  T  Q  K  Q  M  Y  S  D  E  V  L  F  L  R  F  *  K  *  L  S  K  L  L  V  C  P  S  P  T  M  M  R  S  V  P  N  Y  S  N  F  *  T  *  N  *  S  L  Y </second_frame>
            <third_frame>   F  P  S  N  S  P  Q  I  T  N  Q  C  *  I  C  R  K  Q  R  S  I  N  S  H  K  Y  K  *  T  T  K  H  K  I  K  F  I  S  I  F  *  N  Q  T  *  K  K  N  *  K  F  *  E  K  A  F  S  W  R  T  E  I  L  H  Q  L  L  E  G  D  *  R  C  F  Q  L  I  S  Q  H  H  S  T  F  P  I  *  Q  P  L  N  F  *  K  L  P  V  Y  L  P  F  P  A  S  N  L  R  G  I  *  K  V  R  *  R  S  S  M  N  G  P  V  R  S  I  R  F  R  F  L  R  M  A  L  S  K  P  T  T  *  R  R :   *  Q  Q  D  R  M  I  R  V  L  S  F  M  I  Q  A  I  S  T  R  H  L  L  G  H  Q  Y  V  I  L  M  V  M  P  G  S  L  D  I  E  A  T  L  L  K  S  W  P  R  E  V  P  S  W  K  W  H  I  F  C  :  C  M  V  I  Y  H  L  R  I  S  *  Q  T  G  S  S  Q  F  H  S  I  Q  Q  F  H  K  D  S  W :   I  S  Y  S  Q  C  H  M  M  L  I  Q  W  G  F  L  S  V  Q  *  V  L  F  P  F  F  I  L  M  Q  I  Q  L  *  E :   G  R  I  Y  T  S  L  N  K  *  E  I  N  K  *  F  G  S  L  A  R :   H  L  Q  L  L  Q  L  L  T  *  E  W  L  A  G  H  L  S  F  H  P  T  I  S  H  M  R  R  T  S  C  T  C  *  I  H   : *  V  I  G  L  T  N  P  I  L  D  L  L  V  C  S  I  F  F  S  Y  Y  M  Q  N  M  R  *  I  A  L  Q  L  R  H  V  I  L  L  Q   : V  G  L  M  Y  T  Q  Q  *  Q  E  L  W  E  L  C  M  A  L  S  M  G  V  P  M  R :   L  C  *  K  C  S  V  R  L  E  V  L  K  I  F  Q  S  S  L  R  V  S  R  T   : G  N  E  R  C  L  V  L  G  T  V  S  T  K  T  M  I  P  E  Q  K  S  S  R  R  W  P  M  K  Y  F  L  L  W  V  V  I  L  *  L  R :   L  L  L  L  W  K  K  L  H  S  Q  M  S  T  L  *  N  G  S  C  I  Q  T  L  I  S  T  L  V  *  F  T   : G  Q  W  D  F  Q  Q  N  S  F  L  S  C  L  Q  F  L  G  W  P  V  T  C  L  I  G  M  S  P  L  M  I  L  I  P  R  L  *  D  P  H  R :   C  I  L  V  Y  G  C  V  T  I  C  L  S  K  N  D  H  H  I  P  K  Q  T  S  S  V  T  S  P  S  P  T  P  P  N  D  D  W  L  V  Q  G  P  E  A  S  F  K  V  H  S  Y  L  I  *  E  K  *  M  M  V  F  F  F  L  L  Y  E  D  *  T  C  L  D  S  H  I  L  K  S  R  C  I  R  M  K  F  Y  F  S  V  S  K  N  N  L  V  N  F  *  C  V  L  V  L  Q  *  C  G  V  Y  L  I  I  V  T  F  K  L  K  T  S  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5668" stop="6012"/>
                    <exon start="6805" stop="6985"/>
                    <exon start="7372" stop="7457"/>
                    <exon start="8252" stop="8356"/>
                    <exon start="9540" stop="9602"/>
                    <exon start="9711" stop="9820"/>
                    <exon start="10057" stop="10176"/>
                    <exon start="10247" stop="10322"/>
                    <exon start="10455" stop="10528"/>
                    <exon start="10620" stop="10740"/>
                    <exon start="12083" stop="12180"/>
                    <exon start="12260" stop="12383"/>
                    <exon start="12547" stop="12678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INNETQNQIHFYFLKSNIEKKLKILRKSIFMENGNSSSVARGRLAVLSAHLAASLNVSDLTTFKLLETSGVSSVSGVEPPRNLKGALTIIDERTGKKYPVQVSEDGTIKANDLKKITTGQNDKGLKLYDPGYLNTAPVRSSICYIDGDAGILRYRGYPIEELAEGSSFLEVAYLLLYGNLPSENQLADWEFTVSQHSAVPQGLLDIIQSMPHDAHPMGVLVSAMSALSVFHPDANPALRGQDIYKSKQVRDKQIVRILGKAPTIATAAYLRMAGRPPVLPSNNLSYAENFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGVDVYTAIAGAVGALYGPLHGGANEAVLKMLSEIGSVENIPEFLEGVKNRKRKMSGFGHRVYKNYDPRAKVIKTLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLSHWNESLDDPDTKIMRPAQVYTGVWMRHYMPLKERSPHSEADKLGHVSVSNATKRRLAGSGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19350" PGL_stop="21701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19350" e_stop="19794"/>
            <exon e_start="19957" e_stop="20043"/>
            <exon e_start="20236" e_stop="20330"/>
            <exon e_start="20613" e_stop="20953"/>
            <exon e_start="21425" e_stop="21701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.749" acc_prob="0.996" e_score="0.966"/>
          <exon-intron don_prob="0.961" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.819"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="19350" e_stop="19794" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.749" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19795" i_stop="19956" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19957" e_stop="20043" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.983">
            <gDNA_intron_boundary i_start="20044" i_stop="20235" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="20236" e_stop="20330" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20331" i_stop="20612" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="20613" e_stop="20953" e_length="341"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20954" i_stop="21424" i_length="471"/>
          </intron>
          <exon e_serial="5" e_score="0.819">
            <gDNA_exon_boundary e_start="21425" e_stop="21701" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19350" stop="19794"/>
              <exon start="19957" stop="20043"/>
              <exon start="20236" stop="20330"/>
              <exon start="20613" stop="20953"/>
              <exon start="21425" stop="21701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTTGTTTTCCCATATCCACCTGGTTGTGCTGAACATAAAACTGGCATAAAGAAAGAAGCCTATGGTAAGGACTTTGAACAACTCTTATTATCATCGTCATTTTAATTAGCAGTCGAAGCAGCAGCGACTGCAATACTACATAGATTATGTCAAATCTGATCTTCTTTTAAAAGGGGTTGTTCTATGCATGAAGCATTTCCCGTTCATAGTTTGTGAATAAATCGTGTAATGAAATACATGCTTTGGTTATTGCAGGTTTAAAAAATCCACTCACACTAATGAGCTATGTTACTCCAGTAATGACTCTTTCAACTGCTGTGTTGTCCCTTATGTTTGATCCGTGGCACGAATTCAGACACACCAATTACTTTGATACGTCATGGCATATAGCTAGAAGTTGTTTGTTGATGCTTTTTGGCGGAACTTTGGCTTTCTTTATG : GTGTTGACGGAATATATTCTTGTGTCTATCACAAGTGCAGTAACAGTGACAATAGCGGGAGTTGTAAAGGAGGCAGTCACTATCTTG : GTTGCTGTATTTTATTTTCACGACGACTTTACCTGGATGAAAGGGCTTGGTCTCGTGACGATAATGTTTGGTGTCAGTTTGTTCAACTGGTACAA : GTATGACAAAATACATAACAAAGGTAGCACAAGTGAAGATGAAAGTGGATCAGCATTAGGAAATGCAGCTACCAAGTATGTTATACTTGAAGAAATGGAAGATCAAGACCATGGTCCTTGAAGTTTTTCATATGACATTCTAACGACGATGCACTCTCATCGCCTTTTGTATTCGCAACGGAAGGAAGGGGACGAAAAAATACGCAGATTTTCTAGCAAATGAAGGTCAATCGTATACATGAAAAAGATTTGTTGATGAAGGAAGATGAGTTTTTTTTTCACTGGTGAACTTTAAGACATGTTACTTATAGAAGGGAAATATATTACTTTCTCTCTGCTAA : AAAAAAATAATGATATACTTTTTTATATAGGGGTGTGCGTTTGGTATTCGGTTCGATATTTTCAAATTTCAAATTTATAATTTAATAATTGATAATTAAAAATCAATTATCGAACTTTTTAAAATTCTTATAATTAATAAATCAAATTTCAATATGATATTTAGTAATATCACATGGAATGGAAGTTGTAGTCTATTGTATAACAAAGTTAATATTGTTACTTCAATCGTTTTTTTTAAAAATATAAAGACATGATATAATAGAAAATCAAACTGGA</gDNA_template>
            <first_frame> F  C  L  F  S  H  I  H  L  V  V  L  N  I  K  L  A  *  R  K  K  P  M  V  R  T  L  N  N  S  Y  Y  H  R  H  F  N  *  Q  S  K  Q  Q  R  L  Q  Y  Y  I  D  Y  V  K  S  D  L  L  L  K  G  V  V  L  C  M  K  H  F  P  F  I  V  C  E  *  I  V  *  *  N  T  C  F  G  Y  C  R  F  K  K  S  T  H  T  N  E  L  C  Y  S  S  N  D  S  F  N  C  C  V  V  P  Y  V  *  S  V  A  R  I  Q  T  H  Q  L  L  *  Y  V  M  A  Y  S  *  K  L  F  V  D  A  F  W  R  N  F  G  F  L  Y   : G  V  D  G  I  Y  S  C  V  Y  H  K  C  S  N  S  D  N  S  G  S  C  K  G  G  S  H  Y  L   : G  C  C  I  L  F  S  R  R  L  Y  L  D  E  R  A  W  S  R  D  D  N  V  W  C  Q  F  V  Q  L  V  Q  :  V  *  Q  N  T  *  Q  R  *  H  K  *  R  *  K  W  I  S  I  R  K  C  S  Y  Q  V  C  Y  T  *  R  N  G  R  S  R  P  W  S  L  K  F  F  I  *  H  S  N  D  D  A  L  S  S  P  F  V  F  A  T  E  G  R  G  R  K  N  T  Q  I  F  *  Q  M  K  V  N  R  I  H  E  K  D  L  L  M  K  E  D  E  F  F  F  H  W  *  T  L  R  H  V  T  Y  R  R  E  I  Y  Y  F  L  S  A  K :   K  K  *  *  Y  T  F  L  Y  R  G  V  R  L  V  F  G  S  I  F  S  N  F  K  F  I  I  *  *  L  I  I  K  N  Q  L  S  N  F  L  K  F  L  *  L  I  N  Q  I  S  I  *  Y  L  V  I  S  H  G  M  E  V  V  V  Y  C  I  T  K  L  I  L  L  L  Q  S  F  F  L  K  I  *  R  H  D  I  I  E  N  Q  T  G </first_frame>
            <second_frame>  S  V  C  F  P  I  S  T  W  L  C  *  T  *  N  W  H  K  E  R  S  L  W  *  G  L  *  T  T  L  I  I  I  V  I  L  I  S  S  R  S  S  S  D  C  N  T  T  *  I  M  S  N  L  I  F  F  *  K  G  L  F  Y  A  *  S  I  S  R  S  *  F  V  N  K  S  C  N  E  I  H  A  L  V  I  A  G  L  K  N  P  L  T  L  M  S  Y  V  T  P  V  M  T  L  S  T  A  V  L  S  L  M  F  D  P  W  H  E  F  R  H  T  N  Y  F  D  T  S  W  H  I  A  R  S  C  L  L  M  L  F  G  G  T  L  A  F  F  M  :  V  L  T  E  Y  I  L  V  S  I  T  S  A  V  T  V  T  I  A  G  V  V  K  E  A  V  T  I  L  :  V  A  V  F  Y  F  H  D  D  F  T  W  M  K  G  L  G  L  V  T  I  M  F  G  V  S  L  F  N  W  Y  K :   Y  D  K  I  H  N  K  G  S  T  S  E  D  E  S  G  S  A  L  G  N  A  A  T  K  Y  V  I  L  E  E  M  E  D  Q  D  H  G  P  *  S  F  S  Y  D  I  L  T  T  M  H  S  H  R  L  L  Y  S  Q  R  K  E  G  D  E  K  I  R  R  F  S  S  K  *  R  S  I  V  Y  M  K  K  I  C  *  *  R  K  M  S  F  F  F  T  G  E  L  *  D  M  L  L  I  E  G  K  Y  I  T  F  S  L  L   : K  K  N  N  D  I  L  F  Y  I  G  V  C  V  W  Y  S  V  R  Y  F  Q  I  S  N  L  *  F  N  N  *  *  L  K  I  N  Y  R  T  F  *  N  S  Y  N  *  *  I  K  F  Q  Y  D  I  *  *  Y  H  M  E  W  K  L  *  S  I  V  *  Q  S  *  Y  C  Y  F  N  R  F  F  *  K  Y  K  D  M  I  *  *  K  I  K  L   </second_frame>
            <third_frame>   L  F  V  F  P  Y  P  P  G  C  A  E  H  K  T  G  I  K  K  E  A  Y  G  K  D  F  E  Q  L  L  L  S  S  S  F  *  L  A  V  E  A  A  A  T  A  I  L  H  R  L  C  Q  I  *  S  S  F  K  R  G  C  S  M  H  E  A  F  P  V  H  S  L  *  I  N  R  V  M  K  Y  M  L  W  L  L  Q  V  *  K  I  H  S  H  *  *  A  M  L  L  Q  *  *  L  F  Q  L  L  C  C  P  L  C  L  I  R  G  T  N  S  D  T  P  I  T  L  I  R  H  G  I  *  L  E  V  V  C  *  C  F  L  A  E  L  W  L  S  L  W :   C  *  R  N  I  F  L  C  L  S  Q  V  Q  *  Q  *  Q  *  R  E  L  *  R  R  Q  S  L  S  W :   L  L  Y  F  I  F  T  T  T  L  P  G  *  K  G  L  V  S  *  R  *  C  L  V  S  V  C  S  T  G  T   : S  M  T  K  Y  I  T  K  V  A  Q  V  K  M  K  V  D  Q  H  *  E  M  Q  L  P  S  M  L  Y  L  K  K  W  K  I  K  T  M  V  L  E  V  F  H  M  T  F  *  R  R  C  T  L  I  A  F  C  I  R  N  G  R  K  G  T  K  K  Y  A  D  F  L  A  N  E  G  Q  S  Y  T  *  K  R  F  V  D  E  G  R  *  V  F  F  S  L  V  N  F  K  T  C  Y  L  *  K  G  N  I  L  L  S  L  C  *  :  K  K  I  M  I  Y  F  F  I  *  G  C  A  F  G  I  R  F  D  I  F  K  F  Q  I  Y  N  L  I  I  D  N  *  K  S  I  I  E  L  F  K  I  L  I  I  N  K  S  N  F  N  M  I  F  S  N  I  T  W  N  G  S  C  S  L  L  Y  N  K  V  N  I  V  T  S  I  V  F  F  K  N  I  K  T  *  Y  N  R  K  S  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19564" stop="19794"/>
                    <exon start="19957" stop="20043"/>
                    <exon start="20236" stop="20330"/>
                    <exon start="20613" stop="20733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVNKSCNEIHALVIAGLKNPLTLMSYVTPVMTLSTAVLSLMFDPWHEFRHTNYFDTSWHIARSCLLMLFGGTLAFFMVLTEYILVSITSAVTVTIAGVVKEAVTILVAVFYFHDDFTWMKGLGLVTIMFGVSLFNWYKYDKIHNKGSTSEDESGSALGNAATKYVILEEMEDQDHGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26960" PGL_stop="28528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26960" e_stop="28528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26960" e_stop="28528" e_length="1569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26960" stop="28528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATTGACAAGCTAAGTTTTGAGTACATTTAACCATGAAAGATTCAATGCAAGTGACTATTTTGTCCAAAAACCTCATTAAACCATCATTACCAACACCAAAACACCTTAAATATCACAAGTTATCTTTCTTTGATCAAGTTGCTGATGTAGCACACTTGCCTCTTGTTCTTTTCTATCCTCATTGTAAGAACAACTCGAAACATGAAGAGCTTGAAGAATCCTTATCGAGGATTTTATCACATGTTTACCCTTTAGCTGGTCGATTTGCTGAAGATGATGAATCATTAATTCTTTGTCTTGATCAAGGTGTTACTTATATCAAAGCAAAGGTCAATTGTACCCTTGATGATTTACTTCAACAAACAAAAAAAGACCTTGATCTAGCCTTGTCATTTTGGCCTCAAGGTACGATGGATGTTGATGACTCTAATTTGTTCGTCACGCCACTTATGGTTGTGCAAGTCACGACATTTGAATGTGGTGGTCTAGCCCTAGCTATTAGCATTGCACATCCTGTTATGGACGGATGCACCACATTCAAAATCCTTTATGAATGGACCAAAGTGTGCAAATTTGGTACTCCTTCTAAGGAAATCAGCTTCATGAATTTCAATGTAGGTGCTCTTTTCCCTTACAAGCACGATTTATCAACCCTCCTTGAGCCTCCGGTTGATGAAGGCAAACGCAAAGACTCTAAGTTAATTGCGAGGAAGTTTGTTTTTGAGAAAGATGCAATATCGAGGCTCAGAGAGAAATTTGATTCCATAAGTGAAAGTTTAGGTTTTAAACCTTCTCGAGTTGAGATGATTACAGCACTTTTATGGAGGTCACTTATCCGTTCCACGAAAAGTGCAAAATTGAAACGTTCTGTAATGTCATTTCCACTTAACTTGCGCGGTAAGGTAGCAGATTTTCCTGAAATTACAGACTCCTTTGGGAATCTTATTATTGAAGTTCCTATAAAATTTGAGCACGATGATGAAACGAAAATAGAGTCGCTGCATCAGATCGTAAAACTCATAAAAGAGTCTGTTAAAGTGATTAACAATAAATGCGTCAAAGCTACTCCAGATGAAATAATTTCTTTGGTTATCGACTTATACAAGGATAGTTACTCTGGATTAGAATGGGGAGGAGACGATGAAGTTATGAATTTTACGAGCTCAAGTTTATCTAGGTTCCCCATACAAAAAACAGATTTTGGTTGGGGAAAACCTAGTTTAATGCATTTTGGGTCAAGACATAATCAAGTTTTGTGGTTATATGATACTGAATGTGAGACTGGAATTGTTGTGCAAATGGATTTGGAGAAAAAACACATGGATAAACTTGTGTGTGACCAAGATATCATCGATTTTGCAAAATTTTAGGGGTTTAATTTCAACCTGTTTTCATTTAAATTTTACTCCATTTGTTTTAATTTACCTACCTACCATGTGTTGTCCTTTTGGTTTGTTCTTTTTATATATATGAATGTGACTCTACCAGTAGTTTTTTAAAGACTTACTAAATGAAATAAATAATGTAATATGTCAATAATTAAGTGTTGGAAATGAGCTCAAAA</gDNA_template>
            <first_frame> I  S  L  T  S  *  V  L  S  T  F  N  H  E  R  F  N  A  S  D  Y  F  V  Q  K  P  H  *  T  I  I  T  N  T  K  T  P  *  I  S  Q  V  I  F  L  *  S  S  C  *  C  S  T  L  A  S  C  S  F  L  S  S  L  *  E  Q  L  E  T  *  R  A  *  R  I  L  I  E  D  F  I  T  C  L  P  F  S  W  S  I  C  *  R  *  *  I  I  N  S  L  S  *  S  R  C  Y  L  Y  Q  S  K  G  Q  L  Y  P  *  *  F  T  S  T  N  K  K  R  P  *  S  S  L  V  I  L  A  S  R  Y  D  G  C  *  *  L  *  F  V  R  H  A  T  Y  G  C  A  S  H  D  I  *  M  W  W  S  S  P  S  Y  *  H  C  T  S  C  Y  G  R  M  H  H  I  Q  N  P  L  *  M  D  Q  S  V  Q  I  W  Y  S  F  *  G  N  Q  L  H  E  F  Q  C  R  C  S  F  P  L  Q  A  R  F  I  N  P  P  *  A  S  G  *  *  R  Q  T  Q  R  L  *  V  N  C  E  E  V  C  F  *  E  R  C  N  I  E  A  Q  R  E  I  *  F  H  K  *  K  F  R  F  *  T  F  S  S  *  D  D  Y  S  T  F  M  E  V  T  Y  P  F  H  E  K  C  K  I  E  T  F  C  N  V  I  S  T  *  L  A  R  *  G  S  R  F  S  *  N  Y  R  L  L  W  E  S  Y  Y  *  S  S  Y  K  I  *  A  R  *  *  N  E  N  R  V  A  A  S  D  R  K  T  H  K  R  V  C  *  S  D  *  Q  *  M  R  Q  S  Y  S  R  *  N  N  F  F  G  Y  R  L  I  Q  G  *  L  L  W  I  R  M  G  R  R  R  *  S  Y  E  F  Y  E  L  K  F  I  *  V  P  H  T  K  N  R  F  W  L  G  K  T  *  F  N  A  F  W  V  K  T  *  S  S  F  V  V  I  *  Y  *  M  *  D  W  N  C  C  A  N  G  F  G  E  K  T  H  G  *  T  C  V  *  P  R  Y  H  R  F  C  K  I  L  G  V  *  F  Q  P  V  F  I  *  I  L  L  H  L  F  *  F  T  Y  L  P  C  V  V  L  L  V  C  S  F  Y  I  Y  E  C  D  S  T  S  S  F  L  K  T  Y  *  M  K  *  I  M  *  Y  V  N  N  *  V  L  E  M  S  S  K </first_frame>
            <second_frame>  F  H  *  Q  A  K  F  *  V  H  L  T  M  K  D  S  M  Q  V  T  I  L  S  K  N  L  I  K  P  S  L  P  T  P  K  H  L  K  Y  H  K  L  S  F  F  D  Q  V  A  D  V  A  H  L  P  L  V  L  F  Y  P  H  C  K  N  N  S  K  H  E  E  L  E  E  S  L  S  R  I  L  S  H  V  Y  P  L  A  G  R  F  A  E  D  D  E  S  L  I  L  C  L  D  Q  G  V  T  Y  I  K  A  K  V  N  C  T  L  D  D  L  L  Q  Q  T  K  K  D  L  D  L  A  L  S  F  W  P  Q  G  T  M  D  V  D  D  S  N  L  F  V  T  P  L  M  V  V  Q  V  T  T  F  E  C  G  G  L  A  L  A  I  S  I  A  H  P  V  M  D  G  C  T  T  F  K  I  L  Y  E  W  T  K  V  C  K  F  G  T  P  S  K  E  I  S  F  M  N  F  N  V  G  A  L  F  P  Y  K  H  D  L  S  T  L  L  E  P  P  V  D  E  G  K  R  K  D  S  K  L  I  A  R  K  F  V  F  E  K  D  A  I  S  R  L  R  E  K  F  D  S  I  S  E  S  L  G  F  K  P  S  R  V  E  M  I  T  A  L  L  W  R  S  L  I  R  S  T  K  S  A  K  L  K  R  S  V  M  S  F  P  L  N  L  R  G  K  V  A  D  F  P  E  I  T  D  S  F  G  N  L  I  I  E  V  P  I  K  F  E  H  D  D  E  T  K  I  E  S  L  H  Q  I  V  K  L  I  K  E  S  V  K  V  I  N  N  K  C  V  K  A  T  P  D  E  I  I  S  L  V  I  D  L  Y  K  D  S  Y  S  G  L  E  W  G  G  D  D  E  V  M  N  F  T  S  S  S  L  S  R  F  P  I  Q  K  T  D  F  G  W  G  K  P  S  L  M  H  F  G  S  R  H  N  Q  V  L  W  L  Y  D  T  E  C  E  T  G  I  V  V  Q  M  D  L  E  K  K  H  M  D  K  L  V  C  D  Q  D  I  I  D  F  A  K  F  *  G  F  N  F  N  L  F  S  F  K  F  Y  S  I  C  F  N  L  P  T  Y  H  V  L  S  F  W  F  V  L  F  I  Y  M  N  V  T  L  P  V  V  F  *  R  L  T  K  *  N  K  *  C  N  M  S  I  I  K  C  W  K  *  A  Q   </second_frame>
            <third_frame>   F  I  D  K  L  S  F  E  Y  I  *  P  *  K  I  Q  C  K  *  L  F  C  P  K  T  S  L  N  H  H  Y  Q  H  Q  N  T  L  N  I  T  S  Y  L  S  L  I  K  L  L  M  *  H  T  C  L  L  F  F  S  I  L  I  V  R  T  T  R  N  M  K  S  L  K  N  P  Y  R  G  F  Y  H  M  F  T  L  *  L  V  D  L  L  K  M  M  N  H  *  F  F  V  L  I  K  V  L  L  I  S  K  Q  R  S  I  V  P  L  M  I  Y  F  N  K  Q  K  K  T  L  I  *  P  C  H  F  G  L  K  V  R  W  M  L  M  T  L  I  C  S  S  R  H  L  W  L  C  K  S  R  H  L  N  V  V  V  *  P  *  L  L  A  L  H  I  L  L  W  T  D  A  P  H  S  K  S  F  M  N  G  P  K  C  A  N  L  V  L  L  L  R  K  S  A  S  *  I  S  M  *  V  L  F  S  L  T  S  T  I  Y  Q  P  S  L  S  L  R  L  M  K  A  N  A  K  T  L  S  *  L  R  G  S  L  F  L  R  K  M  Q  Y  R  G  S  E  R  N  L  I  P  *  V  K  V  *  V  L  N  L  L  E  L  R  *  L  Q  H  F  Y  G  G  H  L  S  V  P  R  K  V  Q  N  *  N  V  L  *  C  H  F  H  L  T  C  A  V  R  *  Q  I  F  L  K  L  Q  T  P  L  G  I  L  L  L  K  F  L  *  N  L  S  T  M  M  K  R  K  *  S  R  C  I  R  S  *  N  S  *  K  S  L  L  K  *  L  T  I  N  A  S  K  L  L  Q  M  K  *  F  L  W  L  S  T  Y  T  R  I  V  T  L  D  *  N  G  E  E  T  M  K  L  *  I  L  R  A  Q  V  Y  L  G  S  P  Y  K  K  Q  I  L  V  G  E  N  L  V  *  C  I  L  G  Q  D  I  I  K  F  C  G  Y  M  I  L  N  V  R  L  E  L  L  C  K  W  I  W  R  K  N  T  W  I  N  L  C  V  T  K  I  S  S  I  L  Q  N  F  R  G  L  I  S  T  C  F  H  L  N  F  T  P  F  V  L  I  Y  L  P  T  M  C  C  P  F  G  L  F  F  L  Y  I  *  M  *  L  Y  Q  *  F  F  K  D  L  L  N  E  I  N  N  V  I  C  Q  *  L  S  V  G  N  E  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26985" stop="28334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHLTMKDSMQVTILSKNLIKPSLPTPKHLKYHKLSFFDQVADVAHLPLVLFYPHCKNNSKHEELEESLSRILSHVYPLAGRFAEDDESLILCLDQGVTYIKAKVNCTLDDLLQQTKKDLDLALSFWPQGTMDVDDSNLFVTPLMVVQVTTFECGGLALAISIAHPVMDGCTTFKILYEWTKVCKFGTPSKEISFMNFNVGALFPYKHDLSTLLEPPVDEGKRKDSKLIARKFVFEKDAISRLREKFDSISESLGFKPSRVEMITALLWRSLIRSTKSAKLKRSVMSFPLNLRGKVADFPEITDSFGNLIIEVPIKFEHDDETKIESLHQIVKLIKESVKVINNKCVKATPDEIISLVIDLYKDSYSGLEWGGDDEVMNFTSSSLSRFPIQKTDFGWGKPSLMHFGSRHNQVLWLYDTECETGIVVQMDLEKKHMDKLVCDQDIIDFAKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36941" PGL_stop="38593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36941" e_stop="37200"/>
            <exon e_start="38086" e_stop="38593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36941" e_stop="37200" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.976">
            <gDNA_intron_boundary i_start="37201" i_stop="38085" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="38086" e_stop="38593" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36941" stop="37200"/>
              <exon start="38086" stop="38593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTGCAAAGATGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAAATAAACAAAAGGTAAGTACTAAAACATTTCATTCTTGAAATTTGTTAGTGGGTTACAAGTTATCTTATTTATCTTAATCATTGTTAAATAATCTATCTATCTCATTTATTCATTATTATTATTATTAAAAGGTTGATATGTTGAAGAGCAAGTTTGGTTTTGATGAAGCTTTTAACTATAAAGAGGAGCATGATTTAGATGCAACTTTGAAAAG : GTACTTTCCTGATGGAATTGACATATACTTTGAGAATGTTGGAGGTAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGTATTGCTGTGTGTGGGATGATTTCACAATACAACCTTGACAAGACTGAAGGAGTGCACAACTTGTTTTGCCTCATCGCGAAACGAATTCGTATGGAAGGATTTCTTGTTTTTGATTACTATCATCTTTATCCTAAATATTTGGAAATGATCATTCCACAAATAAAGGCTGGTAATATTGTGTATGTGGAAGACATAGCTGAAGGTTTTGAAAGTGCTCCTGGTGCTCTAGTTGGTCTCTTCTCAGGTCTCAATGTTGGAAAGCAAGTTGTGATGATTTCAGAGGAATGAATGGATTTGGATCCTTACCAATTTCTCTTAAGTTTTTACTTGAAAAGAAAGATATTGTGTCATGGTTAAATACATAGACATTTTTGTCATATGTTTAATAAATTTTATGATTTATCTATAGTTTGAAGT</gDNA_template>
            <first_frame> Q  F  A  K  M  L  G  C  Y  V  V  G  S  A  G  N  K  Q  K  V  S  T  K  T  F  H  S  *  N  L  L  V  G  Y  K  L  S  Y  L  S  *  S  L  L  N  N  L  S  I  S  F  I  H  Y  Y  Y  Y  *  K  V  D  M  L  K  S  K  F  G  F  D  E  A  F  N  Y  K  E  E  H  D  L  D  A  T  L  K  R :   Y  F  P  D  G  I  D  I  Y  F  E  N  V  G  G  K  M  L  D  A  V  L  M  N  M  K  L  H  G  R  I  A  V  C  G  M  I  S  Q  Y  N  L  D  K  T  E  G  V  H  N  L  F  C  L  I  A  K  R  I  R  M  E  G  F  L  V  F  D  Y  Y  H  L  Y  P  K  Y  L  E  M  I  I  P  Q  I  K  A  G  N  I  V  Y  V  E  D  I  A  E  G  F  E  S  A  P  G  A  L  V  G  L  F  S  G  L  N  V  G  K  Q  V  V  M  I  S  E  E  *  M  D  L  D  P  Y  Q  F  L  L  S  F  Y  L  K  R  K  I  L  C  H  G  *  I  H  R  H  F  C  H  M  F  N  K  F  Y  D  L  S  I  V  *  S </first_frame>
            <second_frame>  N  L  Q  R  C  *  V  V  M  L  L  V  V  L  E  I  N  K  R  *  V  L  K  H  F  I  L  E  I  C  *  W  V  T  S  Y  L  I  Y  L  N  H  C  *  I  I  Y  L  S  H  L  F  I  I  I  I  I  K  R  L  I  C  *  R  A  S  L  V  L  M  K  L  L  T  I  K  R  S  M  I  *  M  Q  L  *  K   : G  T  F  L  M  E  L  T  Y  T  L  R  M  L  E  V  R  C  L  M  Q  F  L  *  I  *  N  F  M  V  V  L  L  C  V  G  *  F  H  N  T  T  L  T  R  L  K  E  C  T  T  C  F  A  S  S  R  N  E  F  V  W  K  D  F  L  F  L  I  T  I  I  F  I  L  N  I  W  K  *  S  F  H  K  *  R  L  V  I  L  C  M  W  K  T  *  L  K  V  L  K  V  L  L  V  L  *  L  V  S  S  Q  V  S  M  L  E  S  K  L  *  *  F  Q  R  N  E  W  I  W  I  L  T  N  F  S  *  V  F  T  *  K  E  R  Y  C  V  M  V  K  Y  I  D  I  F  V  I  C  L  I  N  F  M  I  Y  L  *  F  E   </second_frame>
            <third_frame>   I  C  K  D  V  R  L  L  C  C  W  *  C  W  K  *  T  K  G  K  Y  *  N  I  S  F  L  K  F  V  S  G  L  Q  V  I  L  F  I  L  I  I  V  K  *  S  I  Y  L  I  Y  S  L  L  L  L  L  K  G  *  Y  V  E  E  Q  V  W  F  *  *  S  F  *  L  *  R  G  A  *  F  R  C  N  F  E  K  :  V  L  S  *  W  N  *  H  I  L  *  E  C  W  R  *  D  A  *  C  S  S  Y  E  Y  E  T  S  W  S  Y  C  C  V  W  D  D  F  T  I  Q  P  *  Q  D  *  R  S  A  Q  L  V  L  P  H  R  E  T  N  S  Y  G  R  I  S  C  F  *  L  L  S  S  L  S  *  I  F  G  N  D  H  S  T  N  K  G  W  *  Y  C  V  C  G  R  H  S  *  R  F  *  K  C  S  W  C  S  S  W  S  L  L  R  S  Q  C  W  K  A  S  C  D  D  F  R  G  M  N  G  F  G  S  L  P  I  S  L  K  F  L  L  E  K  K  D  I  V  S  W  L  N  T  *  T  F  L  S  Y  V  *  *  I  L  *  F  I  Y  S  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37115" stop="37200"/>
                    <exon start="38086" stop="38464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVDMLKSKFGFDEAFNYKEEHDLDATLKRYFPDGIDIYFENVGGKMLDAVLMNMKLHGRIAVCGMISQYNLDKTEGVHNLFCLIAKRIRMEGFLVFDYYHLYPKYLEMIIPQIKAGNIVYVEDIAEGFESAPGALVGLFSGLNVGKQVVMISEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39930" PGL_stop="42719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39930" e_stop="40184"/>
            <exon e_start="41383" e_stop="41563"/>
            <exon e_start="41877" e_stop="42043"/>
            <exon e_start="42158" e_stop="42240"/>
            <exon e_start="42501" e_stop="42719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.854" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.379" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="39930" e_stop="40184" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="40185" i_stop="41382" i_length="1198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41383" e_stop="41563" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.854" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41564" i_stop="41876" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41877" e_stop="42043" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.928">
            <gDNA_intron_boundary i_start="42044" i_stop="42157" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42158" e_stop="42240" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.379">
            <gDNA_intron_boundary i_start="42241" i_stop="42500" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="42501" e_stop="42719" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39930" stop="40184"/>
              <exon start="41383" stop="41563"/>
              <exon start="41877" stop="42043"/>
              <exon start="42158" stop="42240"/>
              <exon start="42501" stop="42719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTCACATAAATTGAAGTGTGAAATGGCTGAAGAAATGATCATGAACAACAAACAAATCATTCTAAAACATTATGTGGAAGGTTACCCTAAGGAATCTGATTTGGAATTTAAGAATAACAACATTAAATTGAATGTTCCAGAAGGTTCTAATGTTGTTGTTTTGAAGAATCTTTACTTGTCTTGTGACCCTTACATGCGTTCACGTATGAGTAAACTTGAGGGTAGCTATGTTCAGTCCTTCACTCCTGGCTCC : CCTATCACAGGATGTGGAGTGGCTAAAGTTTTGAAGTCTGGTGATTCAAATTTTCAAGAAGGTGATTTAGTTTGGGGAATGATTGGATGGGAGGAGTATAGTATTGTAAATGCTACTCAGAGTGCTCTGTTTAAAATTCATGACAAGAATGTACCTCTTTCTTACTATACAGGAATCCTTG : GAATGCCTGGGATGACAGCTTATGTTGGTTTTTATGAGATTTGCTCTCCGAAGAAGGGAGAAACCGTGTATGTTTCTGCTGCTTCTGGAGCAGTTGGTCAGCTTGTTGGCCAATTTGCGAAGACGTTAGGTTGTTATGTTGTTGGTAGTGCTGGAACCAAAGAAAAG : GTTGATCTGTTGAAGAACAAGTTGGGTTTTGATGAAGCTTTTAACTACAAAGAGGAGAAGGATTTAGTTGCAGATTTGAAGAG : GTACTTTCCTAACGGAATTGACATATACTTTGAGAATGTTGGAGGGAAGATGCTTGATGCAGTTCTTATGAATATGAAACTTCATGGTCGGATTGCTGTGTGTGGGATGATCTCACAGTACAACCTTGAGAAGACGGAAGGAGTTCACAACTTGTTCTGCCTCATCACAAAACGAATCCGGATGGAGGGTTTTCTTGTTTCTGATCACTATCATCTCTA</gDNA_template>
            <first_frame> D  S  H  K  L  K  C  E  M  A  E  E  M  I  M  N  N  K  Q  I  I  L  K  H  Y  V  E  G  Y  P  K  E  S  D  L  E  F  K  N  N  N  I  K  L  N  V  P  E  G  S  N  V  V  V  L  K  N  L  Y  L  S  C  D  P  Y  M  R  S  R  M  S  K  L  E  G  S  Y  V  Q  S  F  T  P  G  S  :  P  I  T  G  C  G  V  A  K  V  L  K  S  G  D  S  N  F  Q  E  G  D  L  V  W  G  M  I  G  W  E  E  Y  S  I  V  N  A  T  Q  S  A  L  F  K  I  H  D  K  N  V  P  L  S  Y  Y  T  G  I  L   : G  M  P  G  M  T  A  Y  V  G  F  Y  E  I  C  S  P  K  K  G  E  T  V  Y  V  S  A  A  S  G  A  V  G  Q  L  V  G  Q  F  A  K  T  L  G  C  Y  V  V  G  S  A  G  T  K  E  K  :  V  D  L  L  K  N  K  L  G  F  D  E  A  F  N  Y  K  E  E  K  D  L  V  A  D  L  K  R :   Y  F  P  N  G  I  D  I  Y  F  E  N  V  G  G  K  M  L  D  A  V  L  M  N  M  K  L  H  G  R  I  A  V  C  G  M  I  S  Q  Y  N  L  E  K  T  E  G  V  H  N  L  F  C  L  I  T  K  R  I  R  M  E  G  F  L  V  S  D  H  Y  H  L   </first_frame>
            <second_frame>  I  H  I  N  *  S  V  K  W  L  K  K  *  S  *  T  T  N  K  S  F  *  N  I  M  W  K  V  T  L  R  N  L  I  W  N  L  R  I  T  T  L  N  *  M  F  Q  K  V  L  M  L  L  F  *  R  I  F  T  C  L  V  T  L  T  C  V  H  V  *  V  N  L  R  V  A  M  F  S  P  S  L  L  A  P :   L  S  Q  D  V  E  W  L  K  F  *  S  L  V  I  Q  I  F  K  K  V  I  *  F  G  E  *  L  D  G  R  S  I  V  L  *  M  L  L  R  V  L  C  L  K  F  M  T  R  M  Y  L  F  L  T  I  Q  E  S  L  :  E  C  L  G  *  Q  L  M  L  V  F  M  R  F  A  L  R  R  R  E  K  P  C  M  F  L  L  L  L  E  Q  L  V  S  L  L  A  N  L  R  R  R  *  V  V  M  L  L  V  V  L  E  P  K  K  R :   L  I  C  *  R  T  S  W  V  L  M  K  L  L  T  T  K  R  R  R  I  *  L  Q  I  *  R   : G  T  F  L  T  E  L  T  Y  T  L  R  M  L  E  G  R  C  L  M  Q  F  L  *  I  *  N  F  M  V  G  L  L  C  V  G  *  S  H  S  T  T  L  R  R  R  K  E  F  T  T  C  S  A  S  S  Q  N  E  S  G  W  R  V  F  L  F  L  I  T  I  I  S  </second_frame>
            <third_frame>   F  T  *  I  E  V  *  N  G  *  R  N  D  H  E  Q  Q  T  N  H  S  K  T  L  C  G  R  L  P  *  G  I  *  F  G  I  *  E  *  Q  H  *  I  E  C  S  R  R  F  *  C  C  C  F  E  E  S  L  L  V  L  *  P  L  H  A  F  T  Y  E  *  T  *  G  *  L  C  S  V  L  H  S  W  L   : P  Y  H  R  M  W  S  G  *  S  F  E  V  W  *  F  K  F  S  R  R  *  F  S  L  G  N  D  W  M  G  G  V  *  Y  C  K  C  Y  S  E  C  S  V  *  N  S  *  Q  E  C  T  S  F  L  L  Y  R  N  P  W :   N  A  W  D  D  S  L  C  W  F  L  *  D  L  L  S  E  E  G  R  N  R  V  C  F  C  C  F  W  S  S  W  S  A  C  W  P  I  C  E  D  V  R  L  L  C  C  W  *  C  W  N  Q  R  K   : G  *  S  V  E  E  Q  V  G  F  *  *  S  F  *  L  Q  R  G  E  G  F  S  C  R  F  E  E  :  V  L  S  *  R  N  *  H  I  L  *  E  C  W  R  E  D  A  *  C  S  S  Y  E  Y  E  T  S  W  S  D  C  C  V  W  D  D  L  T  V  Q  P  *  E  D  G  R  S  S  Q  L  V  L  P  H  H  K  T  N  P  D  G  G  F  S  C  F  *  S  L  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39930" stop="40184"/>
                    <exon start="41383" stop="41563"/>
                    <exon start="41877" stop="42043"/>
                    <exon start="42158" stop="42240"/>
                    <exon start="42501" stop="42717"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSHKLKCEMAEEMIMNNKQIILKHYVEGYPKESDLEFKNNNIKLNVPEGSNVVVLKNLYLSCDPYMRSRMSKLEGSYVQSFTPGSPITGCGVAKVLKSGDSNFQEGDLVWGMIGWEEYSIVNATQSALFKIHDKNVPLSYYTGILGMPGMTAYVGFYEICSPKKGETVYVSAASGAVGQLVGQFAKTLGCYVVGSAGTKEKVDLLKNKLGFDEAFNYKEEKDLVADLKRYFPNGIDIYFENVGGKMLDAVLMNMKLHGRIAVCGMISQYNLEKTEGVHNLFCLITKRIRMEGFLVSDHYHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48701" PGL_stop="47928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48701" e_stop="47928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="48701" e_stop="47928" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="47928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAGAAGAATTAAGCTATATTTTTACAGTTGCAACAAGCCCAATTAGGCCACAAAATGTGTACCAAACTACAAACAAACAAAGAAGCAAATGATGAAATCATAGAAAAGAAGCACAAACAATGTTTATGTTTTTTTTTTCATTTGAAAGTTGATGCAACAGTTTGAGCCCAAAATCTAAGATTATGTTTCATATTCATATCATTTTTCATAGCTGGAAATCTCCATTTCAACAATTTTTTACTCATTTTTCTTTTTTCAAGAATCTCCCATGCTTCAGAAAGATAAGGCCTTTTATGAACAATATCTTTTTTTTTAACATTTTCATCAACAATTCCCCATTTCTCCAATCCAGGAACAATTCTAACCAAACTTGAATTCTTATCTTCTTCACTAAACTCAAATCCTAAATCCATAAACCCCTTTAATTCCTCAAGTTCAAGCTCTGATGAGCTTCTTCGAATTCGCATAATTCCCTTGACTCCATTTCTAGCCTTTACTTTTACTTCTTGTGCAACTCTGTTATGTGTGATAATAACAGAAGTTGGAGAGTTCCCAAGTTGACTAAAACTCGGACTTGTATTCGATCCTTCAAAAATATTCTGCTTTTGAATGATCTGACATACATCTGACGATATTTTTAAAGAACAATCACTTTGTGATCGACCTAAGAGATTTGATGATTCTTGAATTTCATGAGGATTTTCTTGAAATAATTTCTTGAATTTATGTGTGTTGGAAAATAATATTTCTTGTTCAAACCAATAAGTATCA</gDNA_template>
            <first_frame> H  K  K  N  *  A  I  F  L  Q  L  Q  Q  A  Q  L  G  H  K  M  C  T  K  L  Q  T  N  K  E  A  N  D  E  I  I  E  K  K  H  K  Q  C  L  C  F  F  F  H  L  K  V  D  A  T  V  *  A  Q  N  L  R  L  C  F  I  F  I  S  F  F  I  A  G  N  L  H  F  N  N  F  L  L  I  F  L  F  S  R  I  S  H  A  S  E  R  *  G  L  L  *  T  I  S  F  F  L  T  F  S  S  T  I  P  H  F  S  N  P  G  T  I  L  T  K  L  E  F  L  S  S  S  L  N  S  N  P  K  S  I  N  P  F  N  S  S  S  S  S  S  D  E  L  L  R  I  R  I  I  P  L  T  P  F  L  A  F  T  F  T  S  C  A  T  L  L  C  V  I  I  T  E  V  G  E  F  P  S  *  L  K  L  G  L  V  F  D  P  S  K  I  F  C  F  *  M  I  *  H  T  S  D  D  I  F  K  E  Q  S  L  C  D  R  P  K  R  F  D  D  S  *  I  S  *  G  F  S  *  N  N  F  L  N  L  C  V  L  E  N  N  I  S  C  S  N  Q  *  V  S </first_frame>
            <second_frame>  T  R  R  I  K  L  Y  F  Y  S  C  N  K  P  N  *  A  T  K  C  V  P  N  Y  K  Q  T  K  K  Q  M  M  K  S  *  K  R  S  T  N  N  V  Y  V  F  F  F  I  *  K  L  M  Q  Q  F  E  P  K  I  *  D  Y  V  S  Y  S  Y  H  F  S  *  L  E  I  S  I  S  T  I  F  Y  S  F  F  F  F  Q  E  S  P  M  L  Q  K  D  K  A  F  Y  E  Q  Y  L  F  F  *  H  F  H  Q  Q  F  P  I  S  P  I  Q  E  Q  F  *  P  N  L  N  S  Y  L  L  H  *  T  Q  I  L  N  P  *  T  P  L  I  P  Q  V  Q  A  L  M  S  F  F  E  F  A  *  F  P  *  L  H  F  *  P  L  L  L  L  L  V  Q  L  C  Y  V  *  *  *  Q  K  L  E  S  S  Q  V  D  *  N  S  D  L  Y  S  I  L  Q  K  Y  S  A  F  E  *  S  D  I  H  L  T  I  F  L  K  N  N  H  F  V  I  D  L  R  D  L  M  I  L  E  F  H  E  D  F  L  E  I  I  S  *  I  Y  V  C  W  K  I  I  F  L  V  Q  T  N  K  Y   </second_frame>
            <third_frame>   Q  E  E  L  S  Y  I  F  T  V  A  T  S  P  I  R  P  Q  N  V  Y  Q  T  T  N  K  Q  R  S  K  *  *  N  H  R  K  E  A  Q  T  M  F  M  F  F  F  S  F  E  S  *  C  N  S  L  S  P  K  S  K  I  M  F  H  I  H  I  I  F  H  S  W  K  S  P  F  Q  Q  F  F  T  H  F  S  F  F  K  N  L  P  C  F  R  K  I  R  P  F  M  N  N  I  F  F  F  N  I  F  I  N  N  S  P  F  L  Q  S  R  N  N  S  N  Q  T  *  I  L  I  F  F  T  K  L  K  S  *  I  H  K  P  L  *  F  L  K  F  K  L  *  *  A  S  S  N  S  H  N  S  L  D  S  I  S  S  L  Y  F  Y  F  L  C  N  S  V  M  C  D  N  N  R  S  W  R  V  P  K  L  T  K  T  R  T  C  I  R  S  F  K  N  I  L  L  L  N  D  L  T  Y  I  *  R  Y  F  *  R  T  I  T  L  *  S  T  *  E  I  *  *  F  L  N  F  M  R  I  F  L  K  *  F  L  E  F  M  C  V  G  K  *  Y  F  L  F  K  P  I  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48401" stop="48138"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISFFLTFSSTIPHFSNPGTILTKLEFLSSSLNSNPKSINPFNSSSSSSDELLRIRIIPLTPFLAFTFTSCATLLCVIITEVGEFPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48546" stop="48325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNSLSPKSKIMFHIHIIFHSWKSPFQQFFTHFSFFKNLPCFRKIRPFMNNIFFFNIFINNSPFLQSRNNSNQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52243" PGL_stop="50261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52243" e_stop="52191"/>
            <exon e_start="52087" e_stop="51980"/>
            <exon e_start="51851" e_stop="51809"/>
            <exon e_start="51260" e_stop="51065"/>
            <exon e_start="50780" e_stop="50261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52243" e_stop="52191" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52190" i_stop="52088" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52087" e_stop="51980" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51979" i_stop="51852" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51851" e_stop="51809" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="51808" i_stop="51261" i_length="548"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51260" e_stop="51065" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.949">
            <gDNA_intron_boundary i_start="51064" i_stop="50781" i_length="284"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="50780" e_stop="50261" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52243" stop="52191"/>
              <exon start="52087" stop="51980"/>
              <exon start="51851" stop="51809"/>
              <exon start="51260" stop="51065"/>
              <exon start="50780" stop="50261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTTCTCTTCTTCCTCTCTCTGTGTGTGAACCCTAAACTCCTGCCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAG : GTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAG : CTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAA : GTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTTGTAGACCGAAGTCTAGTTACTTCTAGAATTGAATAGTTTTCAAGAGTTGCTGTTATTTGGCACAGTATGCTTGTTTTCATTTTTGGTTTATGAGACCAATTCAATCTTTAATATAATCCTTTTTGTGTTAGTTTGTTGTGCAATTCTATAAGAAGCAGAAAACATCAGTTTTTCTCAAGTCTGAACTAATCAAACTAATAAAAATATTATAGTTGTATTTTTTTCCCATTTATTTTATGGTATATATTGCTACATTGACTTTACT</gDNA_template>
            <first_frame> T  L  L  F  F  L  S  L  C  V  N  P  K  L  L  P  P  W :   L  Q  R  R  N  *  A  I  Q  *  G  I  S  K  S  R  S  S  Y  S  I  S  P  L  V  K  V  E  I  V  S  P  E  L  Q  R :   Y  W  S  N  S  V  A  K  V  L  F  S  P  K  :  L  G  I  L  S  V  P  L  E  S  D  V  M  K  R  S  P  V  T  S  L  S  E  G  K  K  L  C  S  S  L  R  V  D  *  R  S  R  S  M  S  C  *  E  G  T  S  V  K  L  D  A  L  D  L  V  F  R  S  T  L  I  L  E  S   : S  M  I  L  Q  L  V  S  M  V  W  I  S  M  L  S  W  N  A  Q  D  T  A  L  L  D  V  V  G  A  S  L  G  L  G  S  N  T  G  S  Q  R  R  T  Q  *  S  G  F  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  S  S  K  S  R  A  D  C  W  I  S  L  S  D  S  K  F  F  V  Y  A  F  C  R  P  K  S  S  Y  F  *  N  *  I  V  F  K  S  C  C  Y  L  A  Q  Y  A  C  F  H  F  W  F  M  R  P  I  Q  S  L  I  *  S  F  L  C  *  F  V  V  Q  F  Y  K  K  Q  K  T  S  V  F  L  K  S  E  L  I  K  L  I  K  I  L  *  L  Y  F  F  P  I  Y  F  M  V  Y  I  A  T  L  T  L   </first_frame>
            <second_frame>  L  F  S  S  S  S  L  C  V  *  T  L  N  S  C  R  H   : G  F  R  E  E  I  E  Q  S  N  E  G  Y  Q  S  P  E  A  R  T  Q  Y  L  R  W  *  K  W  R  S  S  H  Q  S  C  K   : G  I  G  A  T  Q  W  P  K  S  C  F  L  Q  S :   *  V  Y  C  P  F  L  W  N  Q  T  *  *  K  D  R  L  L  R  H  C  Q  R  G  K  S  Y  A  A  P  *  E  W  I  E  G  Q  G  V  *  V  V  E  K  E  L  Q  *  N  W  M  L  W  I  W  Y  S  G  A  H  *  S  W  N  Q  :  V  *  S  F  N  W  Y  L  W  Y  G  F  L  C  C  P  G  T  P  R  I  P  R  C  *  T  S  *  V  Q  V  S  G  W  D  P  T  Q  G  H  K  G  G  L  N  E  V  V  S  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  P  V  S  R  E  P  T  A  G  S  V  Y  L  T  A  S  F  L  F  M  H  F  V  D  R  S  L  V  T  S  R  I  E  *  F  S  R  V  A  V  I  W  H  S  M  L  V  F  I  F  G  L  *  D  Q  F  N  L  *  Y  N  P  F  C  V  S  L  L  C  N  S  I  R  S  R  K  H  Q  F  F  S  S  L  N  *  S  N  *  *  K  Y  Y  S  C  I  F  F  P  F  I  L  W  Y  I  L  L  H  *  L  Y  </second_frame>
            <third_frame>   S  S  L  L  P  L  S  V  C  E  P  *  T  P  A  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  :  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  V  E  S  R  L  L  D  Q  F  I  *  Q  Q  V  F  C  L  C  I  L  *  T  E  V  *  L  L  L  E  L  N  S  F  Q  E  L  L  L  F  G  T  V  C  L  F  S  F  L  V  Y  E  T  N  S  I  F  N  I  I  L  F  V  L  V  C  C  A  I  L  *  E  A  E  N  I  S  F  S  Q  V  *  T  N  Q  T  N  K  N  I  I  V  V  F  F  S  H  L  F  Y  G  I  Y  C  Y  I  D  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52205" stop="52191"/>
                    <exon start="52087" stop="51980"/>
                    <exon start="51851" stop="51809"/>
                    <exon start="51260" stop="51065"/>
                    <exon start="50780" stop="50585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPAAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52084" e_stop="51980"/>
            <exon e_start="51851" e_stop="51809"/>
            <exon e_start="51260" e_stop="50526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="52084" e_stop="51980" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51979" i_stop="51852" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51851" e_stop="51809" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="51808" i_stop="51261" i_length="548"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51260" e_stop="50526" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52084" stop="51980"/>
              <exon start="51851" stop="51809"/>
              <exon start="51260" stop="50526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAGAAGAAATTGAGCAATCCAATGAGGGATATCAAAGTCCAGAAGCTCGTACTCAATATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCTGCAAAG : GTATTGGAGCAACTCAGTGGCCAAAGTCCTGTTTTCTCCAAAG : CTAGGTATACTGTCCGTTCCTTTGGAATCAGACGTAATGAAAAGATCGCCTGTTACGTCACTGTCAGAGGGGAAAAAGCTATGCAGCTCCTTGAGAGTGGATTGAAGGTCAAGGAGTATGAGTTGTTGAGAAGGAACTTCAGTGAAACTGGATGCTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTAAGCATGTTACTGAGATCTTGCTTTGATTCGTTATTCGGACTACTTCTTAATCCTACATATTTATCTTAGGAGGTGCTGCTAGCTTTTATTATGCCAAAACAATTACTCATGCGCGTTCACATATTTACCGGTTGATCATCTTCTAGAAGTGTAGTTGCTTCTTCCATGAGTTTACATGGAATAGATGTTACTATATGAGGTTATATCAGCTGGTCATGATAGTATCTTCGGATTGTTGTGCTCTTATAAATCATTTGACATACTATTCCTTTGTGTTAAAGGTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTATGTTGTCCTGGAACGCCCAGGATACCGCGTTGCTAGACGTCGTAGGTGCAAGTCTCGGGTTGGGATCCAACACAGGGTCACAAAGGAGGACTCAATGAAGTGGTTTCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATCCAGTAAGTCGAGAGCCGACTGCTGGATCAGTTTATCTGACAGCAAGTTTTTTGTTTATGCATTTT</gDNA_template>
            <first_frame> S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  :  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K  *  A  C  Y  *  D  L  A  L  I  R  Y  S  D  Y  F  L  I  L  H  I  Y  L  R  R  C  C  *  L  L  L  C  Q  N  N  Y  S  C  A  F  T  Y  L  P  V  D  H  L  L  E  V  *  L  L  L  P  *  V  Y  M  E  *  M  L  L  Y  E  V  I  S  A  G  H  D  S  I  F  G  L  L  C  S  Y  K  S  F  D  I  L  F  L  C  V  K  G  M  I  L  Q  L  V  S  M  V  W  I  S  M  L  S  W  N  A  Q  D  T  A  L  L  D  V  V  G  A  S  L  G  L  G  S  N  T  G  S  Q  R  R  T  Q  *  S  G  F  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  S  S  K  S  R  A  D  C  W  I  S  L  S  D  S  K  F  F  V  Y  A  F  </first_frame>
            <second_frame>  Q  R  R  N  *  A  I  Q  *  G  I  S  K  S  R  S  S  Y  S  I  S  P  L  V  K  V  E  I  V  S  P  E  L  Q  R :   Y  W  S  N  S  V  A  K  V  L  F  S  P  K  :  L  G  I  L  S  V  P  L  E  S  D  V  M  K  R  S  P  V  T  S  L  S  E  G  K  K  L  C  S  S  L  R  V  D  *  R  S  R  S  M  S  C  *  E  G  T  S  V  K  L  D  A  L  D  L  V  F  R  S  T  L  I  L  E  S  S  K  H  V  T  E  I  L  L  *  F  V  I  R  T  T  S  *  S  Y  I  F  I  L  G  G  A  A  S  F  Y  Y  A  K  T  I  T  H  A  R  S  H  I  Y  R  L  I  I  F  *  K  C  S  C  F  F  H  E  F  T  W  N  R  C  Y  Y  M  R  L  Y  Q  L  V  M  I  V  S  S  D  C  C  A  L  I  N  H  L  T  Y  Y  S  F  V  L  K  V  *  S  F  N  W  Y  L  W  Y  G  F  L  C  C  P  G  T  P  R  I  P  R  C  *  T  S  *  V  Q  V  S  G  W  D  P  T  Q  G  H  K  G  G  L  N  E  V  V  S  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  P  V  S  R  E  P  T  A  G  S  V  Y  L  T  A  S  F  L  F  M  H  F </second_frame>
            <third_frame>   R  E  E  I  E  Q  S  N  E  G  Y  Q  S  P  E  A  R  T  Q  Y  L  R  W  *  K  W  R  S  S  H  Q  S  C  K   : G  I  G  A  T  Q  W  P  K  S  C  F  L  Q  S :   *  V  Y  C  P  F  L  W  N  Q  T  *  *  K  D  R  L  L  R  H  C  Q  R  G  K  S  Y  A  A  P  *  E  W  I  E  G  Q  G  V  *  V  V  E  K  E  L  Q  *  N  W  M  L  W  I  W  Y  S  G  A  H  *  S  W  N  Q  V  S  M  L  L  R  S  C  F  D  S  L  F  G  L  L  L  N  P  T  Y  L  S  *  E  V  L  L  A  F  I  M  P  K  Q  L  L  M  R  V  H  I  F  T  G  *  S  S  S  R  S  V  V  A  S  S  M  S  L  H  G  I  D  V  T  I  *  G  Y  I  S  W  S  *  *  Y  L  R  I  V  V  L  L  *  I  I  *  H  T  I  P  L  C  *  R  Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  V  E  S  R  L  L  D  Q  F  I  *  Q  Q  V  F  C  L  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52084" stop="51980"/>
                    <exon start="51851" stop="51809"/>
                    <exon start="51260" stop="51061"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50877" stop="50644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLYEVISAGHDSIFGLLCSYKSFDILFLCVKGMILQLVSMVWISMLSWNAQDTALLDVVGASLGLGSNTGSQRRTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50403" PGL_stop="50515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50403" e_stop="50515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="50403" e_stop="50515" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50403" stop="50515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGATTATATTAAAGATTGAATTGGTCTCATAAACCAAAAATGAAAACAAGCATACTGTGCCAAATAACAGCAACTCTTGAAAACTATTCAATTCTAGAAGTAACTAGAC</gDNA_template>
            <first_frame> K  R  I  I  L  K  I  E  L  V  S  *  T  K  N  E  N  K  H  T  V  P  N  N  S  N  S  *  K  L  F  N  S  R  S  N  *   </first_frame>
            <second_frame>  K  G  L  Y  *  R  L  N  W  S  H  K  P  K  M  K  T  S  I  L  C  Q  I  T  A  T  L  E  N  Y  S  I  L  E  V  T  R  </second_frame>
            <third_frame>   K  D  Y  I  K  D  *  I  G  L  I  N  Q  K  *  K  Q  A  Y  C  A  K  *  Q  Q  L  L  K  T  I  Q  F  *  K  *  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0210E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54984" PGL_stop="53747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54984" e_stop="54601"/>
            <exon e_start="54181" e_stop="53747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.984"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="54984" e_stop="54601" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54600" i_stop="54182" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="54181" e_stop="53747" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54984" stop="54601"/>
              <exon start="54181" stop="53747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGTCTCCATTACTACAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAG : GTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTATACGAAAAGGCGAATTCAGGAGCGAGCAGCAGAAGCAGCGGCGCAAGTGGGACAGAAGACTAAGGAGACTGGACAAGCAATACAGAGCAAAGCACAAGAAACGAAAGAAAGTGCTAGGAGTGATGTTAGAGCTTAAGTAGTTTGGGGTTTCTATGTGGTGAAATATGCACTTGTATTTTATTTTTGCTTTTTGCAAGCGTTTTCTGTGTGCAGTGTTTGTTGTTAGTTTTCTTTTTTTGTAATGCGCTGTTGTTTTTTGTTATTTGTAATTTAATAATACTTAGCATTTTCTATGCTCATATTGTCCTTGGGAGTTCCTTACTTTATCAAGGTCTAAAGCATTACTC</gDNA_template>
            <first_frame> I  V  S  I  T  T  I  L  S  L  H  N  K  H  K  N  S  L  N  S  Y  H  I  F  I  C  V  I  *  L  W  V  I  E  I  V  L  S  I  P  I  K  F  K  F  I  L  Q  V  V  M  K  V  V  *  V  H  F  S  L  K  R  V  L  Q  L  A  K  F  *  L  L  L  R  L  F  Q  S  A  V  F  F  L  A  L  Q  D  L  L  C  S  E  L  L  L  D  L  L  L  L  P  L  F  F  F  Y  L  A  L  Y  S  Y  L  L  L  L  P  L  H  S  Q  S  L  V  S  *  L  Q  :  V  H  L  D  *  R  V  Y  H  R  C  H  G  L  *  I  T  S  N  R  E  G  Q  R  W  S  N  W  I  I  R  K  G  E  F  R  S  E  Q  Q  K  Q  R  R  K  W  D  R  R  L  R  R  L  D  K  Q  Y  R  A  K  H  K  K  R  K  K  V  L  G  V  M  L  E  L  K  *  F  G  V  S  M  W  *  N  M  H  L  Y  F  I  F  A  F  C  K  R  F  L  C  A  V  F  V  V  S  F  L  F  L  *  C  A  V  V  F  C  Y  L  *  F  N  N  T  *  H  F  L  C  S  Y  C  P  W  E  F  L  T  L  S  R  S  K  A  L  L </first_frame>
            <second_frame>  S  S  P  L  L  Q  Y  F  L  Y  T  T  N  T  K  I  L  L  I  L  I  I  S  S  S  V  L  F  N  Y  G  *  S  R  S  Y  S  V  S  P  S  S  S  S  S  S  F  K  S  L  *  R  W  Y  K  Y  T  S  P  S  K  G  S  F  N  *  P  S  F  S  C  C  Y  A  C  S  S  R  R  Y  S  S  W  P  C  R  T  Y  S  A  R  N  Y  Y  W  T  C  C  C  Y  P  C  F  S  S  I  *  P  C  T  R  T  C  C  C  Y  R  C  T  R  S  H  W  F  L  N  F  R :   C  I  W  I  D  G  F  I  I  A  V  M  D  C  E  L  L  Q  T  G  K  D  N  D  G  A  I  G  L  Y  E  K  A  N  S  G  A  S  S  R  S  S  G  A  S  G  T  E  D  *  G  D  W  T  S  N  T  E  Q  S  T  R  N  E  R  K  C  *  E  *  C  *  S  L  S  S  L  G  F  L  C  G  E  I  C  T  C  I  L  F  L  L  F  A  S  V  F  C  V  Q  C  L  L  L  V  F  F  F  C  N  A  L  L  F  F  V  I  C  N  L  I  I  L  S  I  F  Y  A  H  I  V  L  G  S  S  L  L  Y  Q  G  L  K  H  Y   </second_frame>
            <third_frame>   R  L  H  Y  Y  N  T  F  S  T  Q  Q  T  Q  K  F  S  *  F  L  S  Y  L  H  L  C  Y  L  T  M  G  D  R  D  R  T  Q  Y  P  H  Q  V  Q  V  H  P  S  S  R  Y  E  G  G  I  S  T  L  L  P  Q  K  G  P  S  T  S  Q  V  L  A  V  V  T  L  V  P  V  G  G  I  L  L  G  L  A  G  L  T  L  L  G  T  I  I  G  L  A  V  A  T  P  V  F  L  L  F  S  P  V  L  V  P  A  A  V  T  V  A  L  A  V  T  G  F  L  T  S   : G  A  F  G  L  T  G  L  S  S  L  S  W  I  V  N  Y  F  K  Q  G  R  T  T  M  E  Q  L  D  Y  T  K  R  R  I  Q  E  R  A  A  E  A  A  A  Q  V  G  Q  K  T  K  E  T  G  Q  A  I  Q  S  K  A  Q  E  T  K  E  S  A  R  S  D  V  R  A  *  V  V  W  G  F  Y  V  V  K  Y  A  L  V  F  Y  F  C  F  L  Q  A  F  S  V  C  S  V  C  C  *  F  S  F  F  V  M  R  C  C  F  L  L  F  V  I  *  *  Y  L  A  F  S  M  L  I  L  S  L  G  V  P  Y  F  I  K  V  *  S  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54928" stop="54601"/>
                    <exon start="54181" stop="53958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSYLHLCYLTMGDRDRTQYPHQVQVHPSSRYEGGISTLLPQKGPSTSQVLAVVTLVPVGGILLGLAGLTLLGTIIGLAVATPVFLLFSPVLVPAAVTVALAVTGFLTSGAFGLTGLSSLSWIVNYFKQGRTTMEQLDYTKRRIQERAAEAAAQVGQKTKETGQAIQSKAQETKESARSDVRA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53964" stop="53749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSSLGFLCGEICTCILFLLFASVFCVQCLLLVFFFCNALLFFVICNLIILSIFYAHIVLGSSLLYQGLKHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54968" e_stop="54094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="54968" e_stop="54094" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54968" stop="54094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATACTTTCTCTACACAACAAACACAAAAATTCTCTTAATTCTTATCATATCTTCATCTGTGTTATTTAACTATGGGTGATCGAGATCGTACTCAGTATCCCCATCAAGTTCAAGTTCATCCTTCAAGTCGTTATGAAGGTGGTATAAGTACACTTCTCCCTCAAAAGGGTCCTTCAACTAGCCAAGTTTTAGCTGTTGTTACGCTTGTTCCAGTCGGCGGTATTCTTCTTGGCCTTGCAGGACTTACTCTGCTCGGAACTATTATTGGACTTGCTGTTGCTACCCCTGTTTTTCTTCTATTTAGCCCTGTACTCGTACCTGCTGCTGTTACCGTTGCACTCGCAGTCACTGGTTTCTTAACTTCAGGTTTATTTATACTCTCTCTTTCCGAACTCTTACATCGGTGATTATCGTTGGTTAATGAAATGACTTTTGACGGTTTGATCAATCTTCTTCACTTCTGTTCAAAATCTTGAGCAAATTTTTTGGGTAATTTAACACGGTATAGTCTCATCCTATGTTAAAGATATAATTTAACATGGTATCAGAGTAGAGTCCGTCTCACCTGAGGCCTTGGGAAATGCTACCCACGGGAGGTGGGTGTTAAAAAATGACAAAAATTTCGATGGTTAATGAGAAAGAGTGGACTTTTTATAAGGATTGAACAATCCTTCTCTCTTCAAGCTCCAAGATGTGAATTAGGTCTAAAATCTAATTTTGATAGATATGTTTTGTTTTCAATTGATACGAGTATGACTCTGATTGGGTGTTGTTGTCTAATGTAGGTGCATTTGGATTGACGGGTTTATCATCGCTGTCATGGATTGTGAATTACTTCAAACAGGGAAGGACAACGATGGAGCAATTGGATTA</gDNA_template>
            <first_frame> Q  Y  F  L  Y  T  T  N  T  K  I  L  L  I  L  I  I  S  S  S  V  L  F  N  Y  G  *  S  R  S  Y  S  V  S  P  S  S  S  S  S  S  F  K  S  L  *  R  W  Y  K  Y  T  S  P  S  K  G  S  F  N  *  P  S  F  S  C  C  Y  A  C  S  S  R  R  Y  S  S  W  P  C  R  T  Y  S  A  R  N  Y  Y  W  T  C  C  C  Y  P  C  F  S  S  I  *  P  C  T  R  T  C  C  C  Y  R  C  T  R  S  H  W  F  L  N  F  R  F  I  Y  T  L  S  F  R  T  L  T  S  V  I  I  V  G  *  *  N  D  F  *  R  F  D  Q  S  S  S  L  L  F  K  I  L  S  K  F  F  G  *  F  N  T  V  *  S  H  P  M  L  K  I  *  F  N  M  V  S  E  *  S  P  S  H  L  R  P  W  E  M  L  P  T  G  G  G  C  *  K  M  T  K  I  S  M  V  N  E  K  E  W  T  F  Y  K  D  *  T  I  L  L  S  S  S  S  K  M  *  I  R  S  K  I  *  F  *  *  I  C  F  V  F  N  *  Y  E  Y  D  S  D  W  V  L  L  S  N  V  G  A  F  G  L  T  G  L  S  S  L  S  W  I  V  N  Y  F  K  Q  G  R  T  T  M  E  Q  L  D   </first_frame>
            <second_frame>  N  T  F  S  T  Q  Q  T  Q  K  F  S  *  F  L  S  Y  L  H  L  C  Y  L  T  M  G  D  R  D  R  T  Q  Y  P  H  Q  V  Q  V  H  P  S  S  R  Y  E  G  G  I  S  T  L  L  P  Q  K  G  P  S  T  S  Q  V  L  A  V  V  T  L  V  P  V  G  G  I  L  L  G  L  A  G  L  T  L  L  G  T  I  I  G  L  A  V  A  T  P  V  F  L  L  F  S  P  V  L  V  P  A  A  V  T  V  A  L  A  V  T  G  F  L  T  S  G  L  F  I  L  S  L  S  E  L  L  H  R  *  L  S  L  V  N  E  M  T  F  D  G  L  I  N  L  L  H  F  C  S  K  S  *  A  N  F  L  G  N  L  T  R  Y  S  L  I  L  C  *  R  Y  N  L  T  W  Y  Q  S  R  V  R  L  T  *  G  L  G  K  C  Y  P  R  E  V  G  V  K  K  *  Q  K  F  R  W  L  M  R  K  S  G  L  F  I  R  I  E  Q  S  F  S  L  Q  A  P  R  C  E  L  G  L  K  S  N  F  D  R  Y  V  L  F  S  I  D  T  S  M  T  L  I  G  C  C  C  L  M  *  V  H  L  D  *  R  V  Y  H  R  C  H  G  L  *  I  T  S  N  R  E  G  Q  R  W  S  N  W  I  </second_frame>
            <third_frame>   I  L  S  L  H  N  K  H  K  N  S  L  N  S  Y  H  I  F  I  C  V  I  *  L  W  V  I  E  I  V  L  S  I  P  I  K  F  K  F  I  L  Q  V  V  M  K  V  V  *  V  H  F  S  L  K  R  V  L  Q  L  A  K  F  *  L  L  L  R  L  F  Q  S  A  V  F  F  L  A  L  Q  D  L  L  C  S  E  L  L  L  D  L  L  L  L  P  L  F  F  F  Y  L  A  L  Y  S  Y  L  L  L  L  P  L  H  S  Q  S  L  V  S  *  L  Q  V  Y  L  Y  S  L  F  P  N  S  Y  I  G  D  Y  R  W  L  M  K  *  L  L  T  V  *  S  I  F  F  T  S  V  Q  N  L  E  Q  I  F  W  V  I  *  H  G  I  V  S  S  Y  V  K  D  I  I  *  H  G  I  R  V  E  S  V  S  P  E  A  L  G  N  A  T  H  G  R  W  V  L  K  N  D  K  N  F  D  G  *  *  E  R  V  D  F  L  *  G  L  N  N  P  S  L  F  K  L  Q  D  V  N  *  V  *  N  L  I  L  I  D  M  F  C  F  Q  L  I  R  V  *  L  *  L  G  V  V  V  *  C  R  C  I  W  I  D  G  F  I  I  A  V  M  D  C  E  L  L  Q  T  G  K  D  N  D  G  A  I  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54928" stop="54560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSYLHLCYLTMGDRDRTQYPHQVQVHPSSRYEGGISTLLPQKGPSTSQVLAVVTLVPVGGILLGLAGLTLLGTIIGLAVATPVFLLFSPVLVPAAVTVALAVTGFLTSGLFILSLSELLHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57334" PGL_stop="58999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57334" e_stop="58275"/>
            <exon e_start="58609" e_stop="58999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.388" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57334" e_stop="58275" e_length="942"/>
          </exon>
          <intron i_serial="1" don_prob="0.388" acc_prob="0.983">
            <gDNA_intron_boundary i_start="58276" i_stop="58608" i_length="333"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="58609" e_stop="58999" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57334" stop="58275"/>
              <exon start="58609" stop="58999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGTTTATCATCAAAAATGGAAAAAGAAGCAACATGGCATGAACTTTTAGGGAGCAAAGATTGGGATGGCCTCCTTCAACCTCTAAATCTCCCTCTCCGGCGTCTAATTCTCCGGTGCGGTGACTTTTGTCAAGCTACTTACGATGCTTTCAACAATGACCAAAATTCCAAGTATTGTGGCACCAGTCGTTATGGTAAAAGTTCATTTTTCGACAAAGTCATGTTAGAATCCTCTACCGATTATAAAATATATTGCTTCCTCTATGCTACTGCTAAAATAGGTGCACTGGAAGCCATTTTCCTCCACTCTCTGTCTCGCGAATCGTGGGACAGAGAGTCTAATTGGATCGGCTATATAGCCGTTACGACTGATGAAGTCAGTCGTAAACTAGGACGTAGGGAAGTGTACGTTGTGTTTCGTGGCACGAGTAGGAATTACGAATGGGTCAACGTTTTAGGTGCTCGTCCTGATTCAGCTGACTCTCTTCTTCATCCTAAATCTCTCCAAAAAGGCATTAACAACAAGAACGATGAGGATGAGGACGAGGACGAGGATGAGATCAAAGTAATGGATGGGTGGCTTAAGATTTACGTCTCAAGTAACCCGAAGTCGTCTTTCACGAGACTAAGTGCAAGAGAACAACTTCAAGCAAAGATTGAAAAGTTAAGAAATGAGTATAAAGATGAGAATTTGAGCATAACTTTTACAGGGCATAGTCTTGGTGCTAGCTTAGCTGTTTTAGCTTCATTTGATGTGGTTGAAAATGGTGTGCCAGTTGATATTCCAGTATCTGCAATTGTATTTGGTAGTCCACAAGTTGGGAATAAGGCATTCAATGAAAGAATCAAGAAATTCTCAAACTTGAATATCTTACATGTTAAGAACAAGATTGATCTCATTACCCTTTACCCAAGTGCTCTGTTTGGGTATGTGAATTCAG : GTATAGAGCTAGTCATCGATAGCAGAAAGTCTCCGAGTTTAAAGGATTCAAAAGACATGGGCGATTGGCACAACTTGCAGGGGATGTTACATGTTGTGGCGGGATGGAACGGGGAAGATAAGAAGTTTGAGTTGAAAGTGAAGAGGAGTGTAGCTTTGGTGAACAAGTCATCGTCATTTTTGAAAGATGACTACTTGATTCCAGGGTCGTGGTGGATTGAGAAGAATAGAGGAATGGTTTTTGATAAAAATGGAGAGTGGATTTTGGCACCGCCTTCAGATGAGGACCTTCCAGTCCCTGAGTATTGAATTTATGGGAATGGAGAGTTTGTTCACTTTGCAATTATTTTTGTTTATTGATATTGCTTTGGTCTTGTCAAATGTAAATGTCT</gDNA_template>
            <first_frame> L  V  Y  H  Q  K  W  K  K  K  Q  H  G  M  N  F  *  G  A  K  I  G  M  A  S  F  N  L  *  I  S  L  S  G  V  *  F  S  G  A  V  T  F  V  K  L  L  T  M  L  S  T  M  T  K  I  P  S  I  V  A  P  V  V  M  V  K  V  H  F  S  T  K  S  C  *  N  P  L  P  I  I  K  Y  I  A  S  S  M  L  L  L  K  *  V  H  W  K  P  F  S  S  T  L  C  L  A  N  R  G  T  E  S  L  I  G  S  A  I  *  P  L  R  L  M  K  S  V  V  N  *  D  V  G  K  C  T  L  C  F  V  A  R  V  G  I  T  N  G  S  T  F  *  V  L  V  L  I  Q  L  T  L  F  F  I  L  N  L  S  K  K  A  L  T  T  R  T  M  R  M  R  T  R  T  R  M  R  S  K  *  W  M  G  G  L  R  F  T  S  Q  V  T  R  S  R  L  S  R  D  *  V  Q  E  N  N  F  K  Q  R  L  K  S  *  E  M  S  I  K  M  R  I  *  A  *  L  L  Q  G  I  V  L  V  L  A  *  L  F  *  L  H  L  M  W  L  K  M  V  C  Q  L  I  F  Q  Y  L  Q  L  Y  L  V  V  H  K  L  G  I  R  H  S  M  K  E  S  R  N  S  Q  T  *  I  S  Y  M  L  R  T  R  L  I  S  L  P  F  T  Q  V  L  C  L  G  M  *  I  Q  :  V  *  S  *  S  S  I  A  E  S  L  R  V  *  R  I  Q  K  T  W  A  I  G  T  T  C  R  G  C  Y  M  L  W  R  D  G  T  G  K  I  R  S  L  S  *  K  *  R  G  V  *  L  W  *  T  S  H  R  H  F  *  K  M  T  T  *  F  Q  G  R  G  G  L  R  R  I  E  E  W  F  L  I  K  M  E  S  G  F  W  H  R  L  Q  M  R  T  F  Q  S  L  S  I  E  F  M  G  M  E  S  L  F  T  L  Q  L  F  L  F  I  D  I  A  L  V  L  S  N  V  N  V  </first_frame>
            <second_frame>  *  F  I  I  K  N  G  K  R  S  N  M  A  *  T  F  R  E  Q  R  L  G  W  P  P  S  T  S  K  S  P  S  P  A  S  N  S  P  V  R  *  L  L  S  S  Y  L  R  C  F  Q  Q  *  P  K  F  Q  V  L  W  H  Q  S  L  W  *  K  F  I  F  R  Q  S  H  V  R  I  L  Y  R  L  *  N  I  L  L  P  L  C  Y  C  *  N  R  C  T  G  S  H  F  P  P  L  S  V  S  R  I  V  G  Q  R  V  *  L  D  R  L  Y  S  R  Y  D  *  *  S  Q  S  *  T  R  T  *  G  S  V  R  C  V  S  W  H  E  *  E  L  R  M  G  Q  R  F  R  C  S  S  *  F  S  *  L  S  S  S  S  *  I  S  P  K  R  H  *  Q  Q  E  R  *  G  *  G  R  G  R  G  *  D  Q  S  N  G  W  V  A  *  D  L  R  L  K  *  P  E  V  V  F  H  E  T  K  C  K  R  T  T  S  S  K  D  *  K  V  K  K  *  V  *  R  *  E  F  E  H  N  F  Y  R  A  *  S  W  C  *  L  S  C  F  S  F  I  *  C  G  *  K  W  C  A  S  *  Y  S  S  I  C  N  C  I  W  *  S  T  S  W  E  *  G  I  Q  *  K  N  Q  E  I  L  K  L  E  Y  L  T  C  *  E  Q  D  *  S  H  Y  P  L  P  K  C  S  V  W  V  C  E  F  R :   Y  R  A  S  H  R  *  Q  K  V  S  E  F  K  G  F  K  R  H  G  R  L  A  Q  L  A  G  D  V  T  C  C  G  G  M  E  R  G  R  *  E  V  *  V  E  S  E  E  E  C  S  F  G  E  Q  V  I  V  I  F  E  R  *  L  L  D  S  R  V  V  V  D  *  E  E  *  R  N  G  F  *  *  K  W  R  V  D  F  G  T  A  F  R  *  G  P  S  S  P  *  V  L  N  L  W  E  W  R  V  C  S  L  C  N  Y  F  C  L  L  I  L  L  W  S  C  Q  M  *  M  S </second_frame>
            <third_frame>   S  L  S  S  K  M  E  K  E  A  T  W  H  E  L  L  G  S  K  D  W  D  G  L  L  Q  P  L  N  L  P  L  R  R  L  I  L  R  C  G  D  F  C  Q  A  T  Y  D  A  F  N  N  D  Q  N  S  K  Y  C  G  T  S  R  Y  G  K  S  S  F  F  D  K  V  M  L  E  S  S  T  D  Y  K  I  Y  C  F  L  Y  A  T  A  K  I  G  A  L  E  A  I  F  L  H  S  L  S  R  E  S  W  D  R  E  S  N  W  I  G  Y  I  A  V  T  T  D  E  V  S  R  K  L  G  R  R  E  V  Y  V  V  F  R  G  T  S  R  N  Y  E  W  V  N  V  L  G  A  R  P  D  S  A  D  S  L  L  H  P  K  S  L  Q  K  G  I  N  N  K  N  D  E  D  E  D  E  D  E  D  E  I  K  V  M  D  G  W  L  K  I  Y  V  S  S  N  P  K  S  S  F  T  R  L  S  A  R  E  Q  L  Q  A  K  I  E  K  L  R  N  E  Y  K  D  E  N  L  S  I  T  F  T  G  H  S  L  G  A  S  L  A  V  L  A  S  F  D  V  V  E  N  G  V  P  V  D  I  P  V  S  A  I  V  F  G  S  P  Q  V  G  N  K  A  F  N  E  R  I  K  K  F  S  N  L  N  I  L  H  V  K  N  K  I  D  L  I  T  L  Y  P  S  A  L  F  G  Y  V  N  S   : G  I  E  L  V  I  D  S  R  K  S  P  S  L  K  D  S  K  D  M  G  D  W  H  N  L  Q  G  M  L  H  V  V  A  G  W  N  G  E  D  K  K  F  E  L  K  V  K  R  S  V  A  L  V  N  K  S  S  S  F  L  K  D  D  Y  L  I  P  G  S  W  W  I  E  K  N  R  G  M  V  F  D  K  N  G  E  W  I  L  A  P  P  S  D  E  D  L  P  V  P  E  Y  *  I  Y  G  N  G  E  F  V  H  F  A  I  I  F  V  Y  *  Y  C  F  G  L  V  K  C  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57336" stop="58275"/>
                    <exon start="58609" stop="58916"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSSKMEKEATWHELLGSKDWDGLLQPLNLPLRRLILRCGDFCQATYDAFNNDQNSKYCGTSRYGKSSFFDKVMLESSTDYKIYCFLYATAKIGALEAIFLHSLSRESWDRESNWIGYIAVTTDEVSRKLGRREVYVVFRGTSRNYEWVNVLGARPDSADSLLHPKSLQKGINNKNDEDEDEDEDEIKVMDGWLKIYVSSNPKSSFTRLSAREQLQAKIEKLRNEYKDENLSITFTGHSLGASLAVLASFDVVENGVPVDIPVSAIVFGSPQVGNKAFNERIKKFSNLNILHVKNKIDLITLYPSALFGYVNSGIELVIDSRKSPSLKDSKDMGDWHNLQGMLHVVAGWNGEDKKFELKVKRSVALVNKSSSFLKDDYLIPGSWWIEKNRGMVFDKNGEWILAPPSDEDLPVPEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="61847" PGL_stop="60806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61847" e_stop="60806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="61847" e_stop="60806" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61847" stop="60806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTGAAAATCTTAATGGTGTTGAATACGGATTTGATCTCAATAAGACCAATGGAGGCGAGGCATCAACTCATCCTAATGGATCTGGGGACACATTTGGATCCATGGATGATGATATCGTGTTTAACAGGAATAAACGATGCAAGTATGGTTATGATCTTAATAGTGTTTGCATGGAAGACAATGGCCATGGGAATGGTTTTGGTGGACGGACATGGGACCGGCTGCAATACCTCTCACTTTGGATTGGTGTCGGTGATCTTTTAACTCCTTTAGCAGCTGCAGGTCTTGAACATTGTCCTAACTTGGAGGAGATCAAGATTAGAGTGGAAGGAGATTGCAGGCTATGGTCAAAACCTTCAGAGAGGGCATTTGGATTGAGCACCCTTTTGCGGTACCATAAACTTGTGAAGATGCATTTGGATTGTGGAGATATCATAGGTTACGCACACACTGCCCCGTCGGGGCAGATGGATTTGAGCTTATGGGAACGGTTTTATCTCTTTGGTATTGGAACTTTGAATCTCAGGGAGCTTGATTACTGGCCACCACAAGATAGAGATGTTAATCAAAGGAGTCTATCCCTCCCAGCAGCTGGGCTGCTCCAAGAATGCATCACACTCAGAAAGTTGTTCATCCATGGAACGGCACATGAACATTTCATGATGTTCCTGCTTAGAATCCCAAACCTACGAGATGTACAGCTGAGAGAAGATTACTATCCGGCACCAGAGAATGACATGAGTACTGAAATGAGGTCAGACTCCTTGAGCCGCTTTGAAGCGGCTCTAAACAGACGACAAATTTGTGATTGATGCAAGGAACATATTACATTGTTCAATTTCCATTGTCTAAGGTTTTATTCCTGATTCATTCAAGGAACAGGTACTGTTATGCAACTTCCCTATATGCCCCTGTTGTCATAGATTATATTCCTGCAATAGTATTGTTGTCATATTTAATATCCAGATCTTCTGTATAGTTTTACACATCAGTTAAATTACGCATTTTGAATAAAAAATATGATCAACTTTGGGTGTA</gDNA_template>
            <first_frame> E  I  E  N  L  N  G  V  E  Y  G  F  D  L  N  K  T  N  G  G  E  A  S  T  H  P  N  G  S  G  D  T  F  G  S  M  D  D  D  I  V  F  N  R  N  K  R  C  K  Y  G  Y  D  L  N  S  V  C  M  E  D  N  G  H  G  N  G  F  G  G  R  T  W  D  R  L  Q  Y  L  S  L  W  I  G  V  G  D  L  L  T  P  L  A  A  A  G  L  E  H  C  P  N  L  E  E  I  K  I  R  V  E  G  D  C  R  L  W  S  K  P  S  E  R  A  F  G  L  S  T  L  L  R  Y  H  K  L  V  K  M  H  L  D  C  G  D  I  I  G  Y  A  H  T  A  P  S  G  Q  M  D  L  S  L  W  E  R  F  Y  L  F  G  I  G  T  L  N  L  R  E  L  D  Y  W  P  P  Q  D  R  D  V  N  Q  R  S  L  S  L  P  A  A  G  L  L  Q  E  C  I  T  L  R  K  L  F  I  H  G  T  A  H  E  H  F  M  M  F  L  L  R  I  P  N  L  R  D  V  Q  L  R  E  D  Y  Y  P  A  P  E  N  D  M  S  T  E  M  R  S  D  S  L  S  R  F  E  A  A  L  N  R  R  Q  I  C  D  *  C  K  E  H  I  T  L  F  N  F  H  C  L  R  F  Y  S  *  F  I  Q  G  T  G  T  V  M  Q  L  P  Y  M  P  L  L  S  *  I  I  F  L  Q  *  Y  C  C  H  I  *  Y  P  D  L  L  Y  S  F  T  H  Q  L  N  Y  A  F  *  I  K  N  M  I  N  F  G  C  </first_frame>
            <second_frame>  K  L  K  I  L  M  V  L  N  T  D  L  I  S  I  R  P  M  E  A  R  H  Q  L  I  L  M  D  L  G  T  H  L  D  P  W  M  M  I  S  C  L  T  G  I  N  D  A  S  M  V  M  I  L  I  V  F  A  W  K  T  M  A  M  G  M  V  L  V  D  G  H  G  T  G  C  N  T  S  H  F  G  L  V  S  V  I  F  *  L  L  *  Q  L  Q  V  L  N  I  V  L  T  W  R  R  S  R  L  E  W  K  E  I  A  G  Y  G  Q  N  L  Q  R  G  H  L  D  *  A  P  F  C  G  T  I  N  L  *  R  C  I  W  I  V  E  I  S  *  V  T  H  T  L  P  R  R  G  R  W  I  *  A  Y  G  N  G  F  I  S  L  V  L  E  L  *  I  S  G  S  L  I  T  G  H  H  K  I  E  M  L  I  K  G  V  Y  P  S  Q  Q  L  G  C  S  K  N  A  S  H  S  E  S  C  S  S  M  E  R  H  M  N  I  S  *  C  S  C  L  E  S  Q  T  Y  E  M  Y  S  *  E  K  I  T  I  R  H  Q  R  M  T  *  V  L  K  *  G  Q  T  P  *  A  A  L  K  R  L  *  T  D  D  K  F  V  I  D  A  R  N  I  L  H  C  S  I  S  I  V  *  G  F  I  P  D  S  F  K  E  Q  V  L  L  C  N  F  P  I  C  P  C  C  H  R  L  Y  S  C  N  S  I  V  V  I  F  N  I  Q  I  F  C  I  V  L  H  I  S  *  I  T  H  F  E  *  K  I  *  S  T  L  G  V </second_frame>
            <third_frame>   N  *  K  S  *  W  C  *  I  R  I  *  S  Q  *  D  Q  W  R  R  G  I  N  S  S  *  W  I  W  G  H  I  W  I  H  G  *  *  Y  R  V  *  Q  E  *  T  M  Q  V  W  L  *  S  *  *  C  L  H  G  R  Q  W  P  W  E  W  F  W  W  T  D  M  G  P  A  A  I  P  L  T  L  D  W  C  R  *  S  F  N  S  F  S  S  C  R  S  *  T  L  S  *  L  G  G  D  Q  D  *  S  G  R  R  L  Q  A  M  V  K  T  F  R  E  G  I  W  I  E  H  P  F  A  V  P  *  T  C  E  D  A  F  G  L  W  R  Y  H  R  L  R  T  H  C  P  V  G  A  D  G  F  E  L  M  G  T  V  L  S  L  W  Y  W  N  F  E  S  Q  G  A  *  L  L  A  T  T  R  *  R  C  *  S  K  E  S  I  P  P  S  S  W  A  A  P  R  M  H  H  T  Q  K  V  V  H  P  W  N  G  T  *  T  F  H  D  V  P  A  *  N  P  K  P  T  R  C  T  A  E  R  R  L  L  S  G  T  R  E  *  H  E  Y  *  N  E  V  R  L  L  E  P  L  *  S  G  S  K  Q  T  T  N  L  *  L  M  Q  G  T  Y  Y  I  V  Q  F  P  L  S  K  V  L  F  L  I  H  S  R  N  R  Y  C  Y  A  T  S  L  Y  A  P  V  V  I  D  Y  I  P  A  I  V  L  L  S  Y  L  I  S  R  S  S  V  *  F  Y  T  S  V  K  L  R  I  L  N  K  K  Y  D  Q  L  W  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61847" stop="61032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIENLNGVEYGFDLNKTNGGEASTHPNGSGDTFGSMDDDIVFNRNKRCKYGYDLNSVCMEDNGHGNGFGGRTWDRLQYLSLWIGVGDLLTPLAAAGLEHCPNLEEIKIRVEGDCRLWSKPSERAFGLSTLLRYHKLVKMHLDCGDIIGYAHTAPSGQMDLSLWERFYLFGIGTLNLRELDYWPPQDRDVNQRSLSLPAAGLLQECITLRKLFIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMRSDSLSRFEAALNRRQICD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="63499" PGL_stop="62661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63499" e_stop="62661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63499" e_stop="62661" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63499" stop="62661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATGGTTCATCCCACTTCTCTTCAATGAAAAATTGCACTGTTTATATCATACATATTAACCTCCGTTTAATTCATTACTTTCTTCGTTCATGTTTGCTGTTTCACACTCGAAATTTGAAAAATGTCACGTAAATTGAGATACGAAGAGTCGGAATAGTAATATGTAACCAGCATCCAAACAGAGTGTAGACACAGCTCACTCACCCAGAAATTCTGCAATTTTGTCACTGAGAAAAACACCAAAATCGTCCATCTCTCATTCACTCATCAACAAGCTTTTTTCTTCTTCTTCTTCAATGGCTACTTTAGCTAGACCCACCATCATCAATGACCTTCCTGATGTGATCCTTTCTAACATTATCGCCGCCGTCTCCGACGTTCGCAGCCGGAACACCGCCGCACTTGTCTGCCGGAAATGGCTCGTCCTTGAACGAGCCACGAGAACTTCCCTCACTCTCCGTGGTAACATCCGTGACCTTTTCATGTTACCCACTTGCTTCCGATCTGTTACCCATCTCGACCTCTCACTCGTTTCTCCTTGGGGACATCCCCTCCTATCTCCACGCGCCACCGCCTCCAGCGACGATGCTGATTCCGTCCTCATCGCACACCTCCTCCGCCACGCTTTTCCTATAGTTACTTCGCTCATTGTCTACGCACGTAACCCACATACCCTCCAGTTTTTGCCAGTTCAGTGGCCTCAACTTAAGTATATTAAGCTTGTTCGTTGGCATCAGAGGCCTCAATTAGCTAGTGGGGATGAATTCAACTTGCTGTTTCAAGGATGCCCGCAATTGGGTTCGCTTGATTTATCTACTTTTTACTGTTGGACTGAT</gDNA_template>
            <first_frame> S  N  G  S  S  H  F  S  S  M  K  N  C  T  V  Y  I  I  H  I  N  L  R  L  I  H  Y  F  L  R  S  C  L  L  F  H  T  R  N  L  K  N  V  T  *  I  E  I  R  R  V  G  I  V  I  C  N  Q  H  P  N  R  V  *  T  Q  L  T  H  P  E  I  L  Q  F  C  H  *  E  K  H  Q  N  R  P  S  L  I  H  S  S  T  S  F  F  L  L  L  L  Q  W  L  L  *  L  D  P  P  S  S  M  T  F  L  M  *  S  F  L  T  L  S  P  P  S  P  T  F  A  A  G  T  P  P  H  L  S  A  G  N  G  S  S  L  N  E  P  R  E  L  P  S  L  S  V  V  T  S  V  T  F  S  C  Y  P  L  A  S  D  L  L  P  I  S  T  S  H  S  F  L  L  G  D  I  P  S  Y  L  H  A  P  P  P  P  A  T  M  L  I  P  S  S  S  H  T  S  S  A  T  L  F  L  *  L  L  R  S  L  S  T  H  V  T  H  I  P  S  S  F  C  Q  F  S  G  L  N  L  S  I  L  S  L  F  V  G  I  R  G  L  N  *  L  V  G  M  N  S  T  C  C  F  K  D  A  R  N  W  V  R  L  I  Y  L  L  F  T  V  G  L   </first_frame>
            <second_frame>  Q  M  V  H  P  T  S  L  Q  *  K  I  A  L  F  I  S  Y  I  L  T  S  V  *  F  I  T  F  F  V  H  V  C  C  F  T  L  E  I  *  K  M  S  R  K  L  R  Y  E  E  S  E  *  *  Y  V  T  S  I  Q  T  E  C  R  H  S  S  L  T  Q  K  F  C  N  F  V  T  E  K  N  T  K  I  V  H  L  S  F  T  H  Q  Q  A  F  F  F  F  F  F  N  G  Y  F  S  *  T  H  H  H  Q  *  P  S  *  C  D  P  F  *  H  Y  R  R  R  L  R  R  S  Q  P  E  H  R  R  T  C  L  P  E  M  A  R  P  *  T  S  H  E  N  F  P  H  S  P  W  *  H  P  *  P  F  H  V  T  H  L  L  P  I  C  Y  P  S  R  P  L  T  R  F  S  L  G  T  S  P  P  I  S  T  R  H  R  L  Q  R  R  C  *  F  R  P  H  R  T  P  P  P  P  R  F  S  Y  S  Y  F  A  H  C  L  R  T  *  P  T  Y  P  P  V  F  A  S  S  V  A  S  T  *  V  Y  *  A  C  S  L  A  S  E  A  S  I  S  *  W  G  *  I  Q  L  A  V  S  R  M  P  A  I  G  F  A  *  F  I  Y  F  L  L  L  D  *  </second_frame>
            <third_frame>   K  W  F  I  P  L  L  F  N  E  K  L  H  C  L  Y  H  T  Y  *  P  P  F  N  S  L  L  S  S  F  M  F  A  V  S  H  S  K  F  E  K  C  H  V  N  *  D  T  K  S  R  N  S  N  M  *  P  A  S  K  Q  S  V  D  T  A  H  S  P  R  N  S  A  I  L  S  L  R  K  T  P  K  S  S  I  S  H  S  L  I  N  K  L  F  S  S  S  S  S  M  A  T  L  A  R  P  T  I  I  N  D  L  P  D  V  I  L  S  N  I  I  A  A  V  S  D  V  R  S  R  N  T  A  A  L  V  C  R  K  W  L  V  L  E  R  A  T  R  T  S  L  T  L  R  G  N  I  R  D  L  F  M  L  P  T  C  F  R  S  V  T  H  L  D  L  S  L  V  S  P  W  G  H  P  L  L  S  P  R  A  T  A  S  S  D  D  A  D  S  V  L  I  A  H  L  L  R  H  A  F  P  I  V  T  S  L  I  V  Y  A  R  N  P  H  T  L  Q  F  L  P  V  Q  W  P  Q  L  K  Y  I  K  L  V  R  W  H  Q  R  P  Q  L  A  S  G  D  E  F  N  L  L  F  Q  G  C  P  Q  L  G  S  L  D  L  S  T  F  Y  C  W  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63329" stop="62661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PASKQSVDTAHSPRNSAILSLRKTPKSSISHSLINKLFSSSSSMATLARPTIINDLPDVILSNIIAAVSDVRSRNTAALVCRKWLVLERATRTSLTLRGNIRDLFMLPTCFRSVTHLDLSLVSPWGHPLLSPRATASSDDADSVLIAHLLRHAFPIVTSLIVYARNPHTLQFLPVQWPQLKYIKLVRWHQRPQLASGDEFNLLFQGCPQLGSLDLSTFYCWTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="73952" PGL_stop="74481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73952" e_stop="74481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73952" e_stop="74481" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73952" stop="74481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCATCGACATATTATCTTTTATCAATCTGTATGTGCGAGTCTATGTTAGCTTGTATTTTTGTATCACAAATAAATACAAGCGATATAAGAGCGGATAATACAAGAGATATAGAACGTATAAGACCCTATGTATTAAAAACAATTTGTATAGTCATGTAGTTTTGTACCACAACAAACAAAATAAGAACAAAGTATTACAAGTGATACAACTTGTATCAGCCTGTATGTATATAATACAATCTGTATTTTTGTATTTATGTTTTGCGAATGAAGATACACAACACAAAAGTGATACAACTATATCAACATGTATATATCAAATACAACTTGCAATGCTACATGTTGAATCAATACAAGAACAAATAAATACAAGTGATACAACATGTATTAATGGAATACGATATGTGTCAGACTATACTCGTTAATGCATATTTATTATTTCTTTTCTAAATCTCGCTCGCCTCGGTCCAAATGTTGCTGAAAGGCCCAAAAACATCTTTGATTCTCAAAACGGGAGTTTGGGCTTAA</gDNA_template>
            <first_frame> L  H  R  H  I  I  F  Y  Q  S  V  C  A  S  L  C  *  L  V  F  L  Y  H  K  *  I  Q  A  I  *  E  R  I  I  Q  E  I  *  N  V  *  D  P  M  Y  *  K  Q  F  V  *  S  C  S  F  V  P  Q  Q  T  K  *  E  Q  S  I  T  S  D  T  T  C  I  S  L  Y  V  Y  N  T  I  C  I  F  V  F  M  F  C  E  *  R  Y  T  T  Q  K  *  Y  N  Y  I  N  M  Y  I  S  N  T  T  C  N  A  T  C  *  I  N  T  R  T  N  K  Y  K  *  Y  N  M  Y  *  W  N  T  I  C  V  R  L  Y  S  L  M  H  I  Y  Y  F  F  S  K  S  R  S  P  R  S  K  C  C  *  K  A  Q  K  H  L  *  F  S  K  R  E  F  G  L   </first_frame>
            <second_frame>  C  I  D  I  L  S  F  I  N  L  Y  V  R  V  Y  V  S  L  Y  F  C  I  T  N  K  Y  K  R  Y  K  S  G  *  Y  K  R  Y  R  T  Y  K  T  L  C  I  K  N  N  L  Y  S  H  V  V  L  Y  H  N  K  Q  N  K  N  K  V  L  Q  V  I  Q  L  V  S  A  C  M  Y  I  I  Q  S  V  F  L  Y  L  C  F  A  N  E  D  T  Q  H  K  S  D  T  T  I  S  T  C  I  Y  Q  I  Q  L  A  M  L  H  V  E  S  I  Q  E  Q  I  N  T  S  D  T  T  C  I  N  G  I  R  Y  V  S  D  Y  T  R  *  C  I  F  I  I  S  F  L  N  L  A  R  L  G  P  N  V  A  E  R  P  K  N  I  F  D  S  Q  N  G  S  L  G  L  </second_frame>
            <third_frame>   A  S  T  Y  Y  L  L  S  I  C  M  C  E  S  M  L  A  C  I  F  V  S  Q  I  N  T  S  D  I  R  A  D  N  T  R  D  I  E  R  I  R  P  Y  V  L  K  T  I  C  I  V  M  *  F  C  T  T  T  N  K  I  R  T  K  Y  Y  K  *  Y  N  L  Y  Q  P  V  C  I  *  Y  N  L  Y  F  C  I  Y  V  L  R  M  K  I  H  N  T  K  V  I  Q  L  Y  Q  H  V  Y  I  K  Y  N  L  Q  C  Y  M  L  N  Q  Y  K  N  K  *  I  Q  V  I  Q  H  V  L  M  E  Y  D  M  C  Q  T  I  L  V  N  A  Y  L  L  F  L  F  *  I  S  L  A  S  V  Q  M  L  L  K  G  P  K  T  S  L  I  L  K  T  G  V  W  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74052" stop="74378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKRYRTYKTLCIKNNLYSHVVLYHNKQNKNKVLQVIQLVSACMYIIQSVFLYLCFANEDTQHKSDTTISTCIYQIQLAMLHVESIQEQINTSDTTCINGIRYVSDYTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="74558" PGL_stop="75698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74558" e_stop="75698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="74558" e_stop="75698" e_length="1141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74558" stop="75698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATTTTTGTCGATGTACCGTCGACCTAATCACACTGATTACTTCTCACCCTCTATTCATCTTCTAACCCTAATTCCTCCACCACCGTTCAACAATCCAATTACGCCATCGCCGCCTCCTCACCGTCTTCTCCGATGTCCGACGACGATCTCGTCGCCAGTCCATCCTCGAATAACAATTCTCCGTCGCCGTCTCCATCGCCTCCACCGTCTTCTGTAAAGAATGAACTAGCAACTCTTCCTCCGCCACCGATGATCCCGCCGGCGTCGACTCGTCCGGCTGCATTTCCGGCTCGCGAGGACTGTTGGTCGGAGGCGGCGACTCATACTCTGATCGAAGCGTGGGGTTCTCTCTATGTGGAGCTGAAGCGCGGTAATCTCCGGCAGAAGCACTGGCAGGAGGTGGCTAACGCCGTTAACAAACTTCACGGCAACACGAAGAAGCAATTTCGCACCGATATACAGTGCAAAAACCGCATTGATACATTGAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCTCAATCGCACAGTCGGTATGTCCCGCAGTGGCCATTTTTCAACAGCCTCGACGTCCTGATCGGCGATAATTTCAAACCATCGCCGTTGCCGGTGACGGTCGCTCCTCGACGGAAGACACCTCCGTTGCTTCCTCCTCCAACTTCCGCCGTTCCGGTTGGTCCACGGTCAAAGAGGCCGGCGGCAGTCATGGAGGACGTCGTTTCCCGGAGAAATTTCTCTGCTATGGCTGCAGCTGCAGCTGCTGCTGCCTCCGAGGATTCAGACGAAGAGGAGGAATCGGAAACTTCAAGTCCGGCGACATTTACTGCCAGTGCTCCAAGTAGGAGGAAGGAGAGTGGGGCATTGGCAGAGGGTTGTAGCAGGTTAGCTGAAGCAATAGGAAGGTTTGCCGAGATATACGAACGAGTTGAAGATGCTAAGCAGAGGCAAATGGTGGAATTAGAGAAGCAAAGAATGCAGTTTGCAAAGGATTTGGAGATTCAAAGAATGAAACTTATTATGGAGTCACAAGTTCAGCTTGAAAAGCTTAAACGCGCGAAGAACAGTTCACAAGCTGGTGAGTGACTATGTATTCCTAGTGGAGAATTTGCTGTTTCTTTCATTGTGTTTGATTTTT</gDNA_template>
            <first_frame> H  I  F  V  D  V  P  S  T  *  S  H  *  L  L  L  T  L  Y  S  S  S  N  P  N  S  S  T  T  V  Q  Q  S  N  Y  A  I  A  A  S  S  P  S  S  P  M  S  D  D  D  L  V  A  S  P  S  S  N  N  N  S  P  S  P  S  P  S  P  P  P  S  S  V  K  N  E  L  A  T  L  P  P  P  P  M  I  P  P  A  S  T  R  P  A  A  F  P  A  R  E  D  C  W  S  E  A  A  T  H  T  L  I  E  A  W  G  S  L  Y  V  E  L  K  R  G  N  L  R  Q  K  H  W  Q  E  V  A  N  A  V  N  K  L  H  G  N  T  K  K  Q  F  R  T  D  I  Q  C  K  N  R  I  D  T  L  K  K  K  Y  K  I  E  K  A  R  V  S  Q  S  H  S  R  Y  V  P  Q  W  P  F  F  N  S  L  D  V  L  I  G  D  N  F  K  P  S  P  L  P  V  T  V  A  P  R  R  K  T  P  P  L  L  P  P  P  T  S  A  V  P  V  G  P  R  S  K  R  P  A  A  V  M  E  D  V  V  S  R  R  N  F  S  A  M  A  A  A  A  A  A  A  A  S  E  D  S  D  E  E  E  E  S  E  T  S  S  P  A  T  F  T  A  S  A  P  S  R  R  K  E  S  G  A  L  A  E  G  C  S  R  L  A  E  A  I  G  R  F  A  E  I  Y  E  R  V  E  D  A  K  Q  R  Q  M  V  E  L  E  K  Q  R  M  Q  F  A  K  D  L  E  I  Q  R  M  K  L  I  M  E  S  Q  V  Q  L  E  K  L  K  R  A  K  N  S  S  Q  A  G  E  *  L  C  I  P  S  G  E  F  A  V  S  F  I  V  F  D  F  </first_frame>
            <second_frame>  T  F  L  S  M  Y  R  R  P  N  H  T  D  Y  F  S  P  S  I  H  L  L  T  L  I  P  P  P  P  F  N  N  P  I  T  P  S  P  P  P  H  R  L  L  R  C  P  T  T  I  S  S  P  V  H  P  R  I  T  I  L  R  R  R  L  H  R  L  H  R  L  L  *  R  M  N  *  Q  L  F  L  R  H  R  *  S  R  R  R  R  L  V  R  L  H  F  R  L  A  R  T  V  G  R  R  R  R  L  I  L  *  S  K  R  G  V  L  S  M  W  S  *  S  A  V  I  S  G  R  S  T  G  R  R  W  L  T  P  L  T  N  F  T  A  T  R  R  S  N  F  A  P  I  Y  S  A  K  T  A  L  I  H  *  R  R  S  T  R  S  R  K  L  G  F  L  N  R  T  V  G  M  S  R  S  G  H  F  S  T  A  S  T  S  *  S  A  I  I  S  N  H  R  R  C  R  *  R  S  L  L  D  G  R  H  L  R  C  F  L  L  Q  L  P  P  F  R  L  V  H  G  Q  R  G  R  R  Q  S  W  R  T  S  F  P  G  E  I  S  L  L  W  L  Q  L  Q  L  L  L  P  P  R  I  Q  T  K  R  R  N  R  K  L  Q  V  R  R  H  L  L  P  V  L  Q  V  G  G  R  R  V  G  H  W  Q  R  V  V  A  G  *  L  K  Q  *  E  G  L  P  R  Y  T  N  E  L  K  M  L  S  R  G  K  W  W  N  *  R  S  K  E  C  S  L  Q  R  I  W  R  F  K  E  *  N  L  L  W  S  H  K  F  S  L  K  S  L  N  A  R  R  T  V  H  K  L  V  S  D  Y  V  F  L  V  E  N  L  L  F  L  S  L  C  L  I  F </second_frame>
            <third_frame>   H  F  C  R  C  T  V  D  L  I  T  L  I  T  S  H  P  L  F  I  F  *  P  *  F  L  H  H  R  S  T  I  Q  L  R  H  R  R  L  L  T  V  F  S  D  V  R  R  R  S  R  R  Q  S  I  L  E  *  Q  F  S  V  A  V  S  I  A  S  T  V  F  C  K  E  *  T  S  N  S  S  S  A  T  D  D  P  A  G  V  D  S  S  G  C  I  S  G  S  R  G  L  L  V  G  G  G  D  S  Y  S  D  R  S  V  G  F  S  L  C  G  A  E  A  R  *  S  P  A  E  A  L  A  G  G  G  *  R  R  *  Q  T  S  R  Q  H  E  E  A  I  S  H  R  Y  T  V  Q  K  P  H  *  Y  I  E  E  E  V  Q  D  R  E  S  *  G  F  S  I  A  Q  S  V  C  P  A  V  A  I  F  Q  Q  P  R  R  P  D  R  R  *  F  Q  T  I  A  V  A  G  D  G  R  S  S  T  E  D  T  S  V  A  S  S  S  N  F  R  R  S  G  W  S  T  V  K  E  A  G  G  S  H  G  G  R  R  F  P  E  K  F  L  C  Y  G  C  S  C  S  C  C  C  L  R  G  F  R  R  R  G  G  I  G  N  F  K  S  G  D  I  Y  C  Q  C  S  K  *  E  E  G  E  W  G  I  G  R  G  L  *  Q  V  S  *  S  N  R  K  V  C  R  D  I  R  T  S  *  R  C  *  A  E  A  N  G  G  I  R  E  A  K  N  A  V  C  K  G  F  G  D  S  K  N  E  T  Y  Y  G  V  T  S  S  A  *  K  A  *  T  R  E  E  Q  F  T  S  W  *  V  T  M  Y  S  *  W  R  I  C  C  F  F  H  C  V  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74597" stop="75646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLTLYSSSNPNSSTTVQQSNYAIAASSPSSPMSDDDLVASPSSNNNSPSPSPSPPPSSVKNELATLPPPPMIPPASTRPAAFPAREDCWSEAATHTLIEAWGSLYVELKRGNLRQKHWQEVANAVNKLHGNTKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYVPQWPFFNSLDVLIGDNFKPSPLPVTVAPRRKTPPLLPPPTSAVPVGPRSKRPAAVMEDVVSRRNFSAMAAAAAAAASEDSDEEEESETSSPATFTASAPSRRKESGALAEGCSRLAEAIGRFAEIYERVEDAKQRQMVELEKQRMQFAKDLEIQRMKLIMESQVQLEKLKRAKNSSQAGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="76269" PGL_stop="76949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76269" e_stop="76949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="76269" e_stop="76949" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76269" stop="76949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76269" stop="76888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGAAGATATATATAAGGTAACATATGTTGCAATCACATATATTATTAATTGATGGCGAAGTTTCCTTATACAAGAAGTATTCGAGAAAGTAGAGAGTCTTTCAAAACAAATGTGGTTCTCCACAAAGTACACCGGATCTTCTATGCAGACTGCAATATACTAGAAATAGAGGCTATTACTCTTCAAATTCGGACTTTACACTCATCAAAAGCTATCTAACTCCTCTCCTTCCATCAAATCCACGTAAGTACTAGTGTGGCAAAAGCCCATGCTCTATGAAATTACTCGTGCTTACATAGGCTCAGTTGTGCAACACCATCTTTATTGTTTGACTTCGACTTGCCAATCTCAAAGCTGCTGAACAAAATCTTTCTTGGATAGTTGGGTGTATCATGTGTTGGGAATCAGCTTCTGAGTGCTTATACAAGTTCAGGCAGTAGGTCTTATTCTACATCAGTTAGTTATTTAAGTAAACTGTTTAGATGACAGCCTTTTGAACCAAGTATGCGTCTCTCACTTTTTTAATCATTCGTTATGTAAAATTCTTATCTTATTAGCCAATAATGAAATAAAATGATCCATAAACCAAATTATCACTTGAGTTTCTTTTCATCCTGAGGCTTAGAAGATTCTTTGACCAACTGTTGGCTACTCTTGAGATTATCTTCTCTTTTGGC</gDNA_template>
            <first_frame> D  L  K  I  Y  I  R  *  H  M  L  Q  S  H  I  L  L  I  D  G  E  V  S  L  Y  K  K  Y  S  R  K  *  R  V  F  Q  N  K  C  G  S  P  Q  S  T  P  D  L  L  C  R  L  Q  Y  T  R  N  R  G  Y  Y  S  S  N  S  D  F  T  L  I  K  S  Y  L  T  P  L  L  P  S  N  P  R  K  Y  *  C  G  K  S  P  C  S  M  K  L  L  V  L  T  *  A  Q  L  C  N  T  I  F  I  V  *  L  R  L  A  N  L  K  A  A  E  Q  N  L  S  W  I  V  G  C  I  M  C  W  E  S  A  S  E  C  L  Y  K  F  R  Q  *  V  L  F  Y  I  S  *  L  F  K  *  T  V  *  M  T  A  F  *  T  K  Y  A  S  L  T  F  L  I  I  R  Y  V  K  F  L  S  Y  *  P  I  M  K  *  N  D  P  *  T  K  L  S  L  E  F  L  F  I  L  R  L  R  R  F  F  D  Q  L  L  A  T  L  E  I  I  F  S  F  G </first_frame>
            <second_frame>  I  *  R  Y  I  *  G  N  I  C  C  N  H  I  Y  Y  *  L  M  A  K  F  P  Y  T  R  S  I  R  E  S  R  E  S  F  K  T  N  V  V  L  H  K  V  H  R  I  F  Y  A  D  C  N  I  L  E  I  E  A  I  T  L  Q  I  R  T  L  H  S  S  K  A  I  *  L  L  S  F  H  Q  I  H  V  S  T  S  V  A  K  A  H  A  L  *  N  Y  S  C  L  H  R  L  S  C  A  T  P  S  L  L  F  D  F  D  L  P  I  S  K  L  L  N  K  I  F  L  G  *  L  G  V  S  C  V  G  N  Q  L  L  S  A  Y  T  S  S  G  S  R  S  Y  S  T  S  V  S  Y  L  S  K  L  F  R  *  Q  P  F  E  P  S  M  R  L  S  L  F  *  S  F  V  M  *  N  S  Y  L  I  S  Q  *  *  N  K  M  I  H  K  P  N  Y  H  L  S  F  F  S  S  *  G  L  E  D  S  L  T  N  C  W  L  L  L  R  L  S  S  L  L   </second_frame>
            <third_frame>   S  E  D  I  Y  K  V  T  Y  V  A  I  T  Y  I  I  N  *  W  R  S  F  L  I  Q  E  V  F  E  K  V  E  S  L  S  K  Q  M  W  F  S  T  K  Y  T  G  S  S  M  Q  T  A  I  Y  *  K  *  R  L  L  L  F  K  F  G  L  Y  T  H  Q  K  L  S  N  S  S  P  S  I  K  S  T  *  V  L  V  W  Q  K  P  M  L  Y  E  I  T  R  A  Y  I  G  S  V  V  Q  H  H  L  Y  C  L  T  S  T  C  Q  S  Q  S  C  *  T  K  S  F  L  D  S  W  V  Y  H  V  L  G  I  S  F  *  V  L  I  Q  V  Q  A  V  G  L  I  L  H  Q  L  V  I  *  V  N  C  L  D  D  S  L  L  N  Q  V  C  V  S  H  F  F  N  H  S  L  C  K  I  L  I  L  L  A  N  N  E  I  K  *  S  I  N  Q  I  I  T  *  V  S  F  H  P  E  A  *  K  I  L  *  P  T  V  G  Y  S  *  D  Y  L  L  F  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0210E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="78195" PGL_stop="77151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78195" e_stop="77151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="78195" e_stop="77151" e_length="1045"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78195" stop="77151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGTCTGGCTTAGGCAAATCACTTTACACAGAAATAAGTTACAAACTCTTTTTCAAGTCTCAAAGAAAAAGTACATTAAAAATCAAGCCTAAAACTAGTATCTACCGCTCATCTTCAATAAAACTAGTATACTCTTGGCAAGGTTTAACCAAAATATATGTATCACCTCCGAAAGATTCGTGGAAAAAATGCACTCTTCTACTCAACATTCCTTGTACAAGTAACCATCTGCTCATAAAAATAGCAACTCATGAACTTCTTATCAAAGGAATTTCAAGCTAACATCCAGAGAGTAGCAATTAGTACATGATAATGGCACATTACAGGCTTTATGTAATATTTAGAAGGTACGAAAAGGCAACAAAAATGAAAGGATTCTCTACTTCTCGAGAAACTTTCAAGTATTTAGGAGCTAGAGTGCACCAGCAGAGCTTCTCAATAACCTTCCCTTTACCAAAGTGGAGCAAAAGTTAAGAAACACTTTACCACTAACCCTATCGACTGCTAATTCCATAATTAGAGCTCAACAGTCATAATTTCCTCGACGGAAGTAAAGAAGGAGCAAATGGTAATTTAAAATAATAGAGTAATGAAGCTTTCTTCACACAACTGAACTATTATAGTTTCTATAAGCGTCATGGTCCACGGAGATGCACATTTATGACAGAGCAAATATATTTGTTTAATGCAACAAAAAGTTCTGCACATAGACACAAGCATTGCATCTTTACTGTTCTTATTAGCCATCCTGTGAAGCTTAAACTAAGTGTTATTCTAAGGATATAGATCATAGACCAATCGCAGATCTCTAGTGGCATCATAAGATTTTCTTGCAGTAACTAGATCAACAATTCTTCAGGAATGTAAATAGATAGTCTCAAGATCATAACAATGATGTTCCGGAATACATCAGTAAGTGACTATTTTCATTTTAAATTCAATCTGTTCAAGAGATGTCAACACAAAATGTTTCAGTAACAATATTCTTCAAAAAAGTCCAATGGCAATTTTAAGAGAGAGTAACAAAAATGCAACATGCATAC</gDNA_template>
            <first_frame> E  G  L  A  *  A  N  H  F  T  Q  K  *  V  T  N  S  F  S  S  L  K  E  K  V  H  *  K  S  S  L  K  L  V  S  T  A  H  L  Q  *  N  *  Y  T  L  G  K  V  *  P  K  Y  M  Y  H  L  R  K  I  R  G  K  N  A  L  F  Y  S  T  F  L  V  Q  V  T  I  C  S  *  K  *  Q  L  M  N  F  L  S  K  E  F  Q  A  N  I  Q  R  V  A  I  S  T  *  *  W  H  I  T  G  F  M  *  Y  L  E  G  T  K  R  Q  Q  K  *  K  D  S  L  L  L  E  K  L  S  S  I  *  E  L  E  C  T  S  R  A  S  Q  *  P  S  L  Y  Q  S  G  A  K  V  K  K  H  F  T  T  N  P  I  D  C  *  F  H  N  *  S  S  T  V  I  I  S  S  T  E  V  K  K  E  Q  M  V  I  *  N  N  R  V  M  K  L  S  S  H  N  *  T  I  I  V  S  I  S  V  M  V  H  G  D  A  H  L  *  Q  S  K  Y  I  C  L  M  Q  Q  K  V  L  H  I  D  T  S  I  A  S  L  L  F  L  L  A  I  L  *  S  L  N  *  V  L  F  *  G  Y  R  S  *  T  N  R  R  S  L  V  A  S  *  D  F  L  A  V  T  R  S  T  I  L  Q  E  C  K  *  I  V  S  R  S  *  Q  *  C  S  G  I  H  Q  *  V  T  I  F  I  L  N  S  I  C  S  R  D  V  N  T  K  C  F  S  N  N  I  L  Q  K  S  P  M  A  I  L  R  E  S  N  K  N  A  T  C  I  </first_frame>
            <second_frame>  R  V  W  L  R  Q  I  T  L  H  R  N  K  L  Q  T  L  F  Q  V  S  K  K  K  Y  I  K  N  Q  A  *  N  *  Y  L  P  L  I  F  N  K  T  S  I  L  L  A  R  F  N  Q  N  I  C  I  T  S  E  R  F  V  E  K  M  H  S  S  T  Q  H  S  L  Y  K  *  P  S  A  H  K  N  S  N  S  *  T  S  Y  Q  R  N  F  K  L  T  S  R  E  *  Q  L  V  H  D  N  G  T  L  Q  A  L  C  N  I  *  K  V  R  K  G  N  K  N  E  R  I  L  Y  F  S  R  N  F  Q  V  F  R  S  *  S  A  P  A  E  L  L  N  N  L  P  F  T  K  V  E  Q  K  L  R  N  T  L  P  L  T  L  S  T  A  N  S  I  I  R  A  Q  Q  S  *  F  P  R  R  K  *  R  R  S  K  W  *  F  K  I  I  E  *  *  S  F  L  H  T  T  E  L  L  *  F  L  *  A  S  W  S  T  E  M  H  I  Y  D  R  A  N  I  F  V  *  C  N  K  K  F  C  T  *  T  Q  A  L  H  L  Y  C  S  Y  *  P  S  C  E  A  *  T  K  C  Y  S  K  D  I  D  H  R  P  I  A  D  L  *  W  H  H  K  I  F  L  Q  *  L  D  Q  Q  F  F  R  N  V  N  R  *  S  Q  D  H  N  N  D  V  P  E  Y  I  S  K  *  L  F  S  F  *  I  Q  S  V  Q  E  M  S  T  Q  N  V  S  V  T  I  F  F  K  K  V  Q  W  Q  F  *  E  R  V  T  K  M  Q  H  A  Y </second_frame>
            <third_frame>   G  S  G  L  G  K  S  L  Y  T  E  I  S  Y  K  L  F  F  K  S  Q  R  K  S  T  L  K  I  K  P  K  T  S  I  Y  R  S  S  S  I  K  L  V  Y  S  W  Q  G  L  T  K  I  Y  V  S  P  P  K  D  S  W  K  K  C  T  L  L  L  N  I  P  C  T  S  N  H  L  L  I  K  I  A  T  H  E  L  L  I  K  G  I  S  S  *  H  P  E  S  S  N  *  Y  M  I  M  A  H  Y  R  L  Y  V  I  F  R  R  Y  E  K  A  T  K  M  K  G  F  S  T  S  R  E  T  F  K  Y  L  G  A  R  V  H  Q  Q  S  F  S  I  T  F  P  L  P  K  W  S  K  S  *  E  T  L  Y  H  *  P  Y  R  L  L  I  P  *  L  E  L  N  S  H  N  F  L  D  G  S  K  E  G  A  N  G  N  L  K  *  *  S  N  E  A  F  F  T  Q  L  N  Y  Y  S  F  Y  K  R  H  G  P  R  R  C  T  F  M  T  E  Q  I  Y  L  F  N  A  T  K  S  S  A  H  R  H  K  H  C  I  F  T  V  L  I  S  H  P  V  K  L  K  L  S  V  I  L  R  I  *  I  I  D  Q  S  Q  I  S  S  G  I  I  R  F  S  C  S  N  *  I  N  N  S  S  G  M  *  I  D  S  L  K  I  I  T  M  M  F  R  N  T  S  V  S  D  Y  F  H  F  K  F  N  L  F  K  R  C  Q  H  K  M  F  Q  *  Q  Y  S  S  K  K  S  N  G  N  F  K  R  E  *  Q  K  C  N  M  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78193" stop="77912"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSGLGKSLYTEISYKLFFKSQRKSTLKIKPKTSIYRSSSIKLVYSWQGLTKIYVSPPKDSWKKCTLLLNIPCTSNHLLIKIATHELLIKGISS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210E10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77608" stop="77408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNEAFFTQLNYYSFYKRHGPRRCTFMTEQIYLFNATKSSAHRHKHCIFTVLISHPVKLKLSVILRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 43856 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2192 bytes was the average size of a spliced alignment
$ 24272 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1517 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:23:05
-->
