<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-12 23:08:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E347322" ref_strand="+" ref_description="SGN-E347322 	[cTOF-33-O19]">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="4571" stop="5833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4863" g_stop="5533" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E347322" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4863" e_stop="5533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATG-AAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATG-TTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAAT</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E215035" ref_strand="+" ref_description="SGN-E215035 	[cLEC-78-O5]">
      <seq>gaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattagggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagctttgtttaatgagtatacaaaccccatttcaaatgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="4632" stop="5839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4932" g_stop="5539" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E215035" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4932" e_stop="5539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATTTTCAAGAATGTTGTGAAGATG-AAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATG-TTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</genome_strand>
        <mrna_strand>GAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTAGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E272513" ref_strand="+" ref_description="SGN-E272513 	[cLEM-21-G19]">
      <seq>ctctcaaatctcaactctcgtcagtcgtctaagatacccgcagctcgtcgtccatcttctcttaaggctcagggccaccactgctcagtcctcactgactgttaagtgctcgctgccccggaactgttcagtgctcgtgactcacccctcgcaggacgaatggctggaaagtctgtagcaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagccttggagccctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggaccaagattggccctaccatccagcgagaaaggaaatgagaaccaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7425" stop="17367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7725" g_stop="7877" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="17067" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="529" r_length="375" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E272513" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7725" e_stop="7877"/>
          <exon e_start="16696" e_stop="17067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTG-CCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAG-CTTGGAG-CCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGA-CAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATG</genome_strand>
        <mrna_strand>CTCTCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGGCCACCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCCGGAACTGTTCAGTGCTCGTGACTCACCCCTCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCCTTGGAGCCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACCAAGATTGGCCCTACCATCCAGCGAGAAAGGAAATGAGAACCAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E279466" ref_strand="+" ref_description="SGN-E279466 	[cLER-5-A9]">
      <seq>tcaaatctcaactctcgtcagtcgtctaagatacccgcagctcgtcgaccatcttctcttaaggctcaggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcagtgctcgtgactcacgcctcgcaggaccaatggctggaaagtctgtaacaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctcgggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaaccaagcataaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaaagaaaagtgggagaggaaaatgaaagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7428" stop="17359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7728" g_stop="7877" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="17059" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="514" r_length="364" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E279466" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7728" e_stop="7877"/>
          <exon e_start="16696" e_stop="17059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGA</genome_strand>
        <mrna_strand>TCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGACCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E286375" ref_strand="+" ref_description="SGN-E286375 	[cLES-11-H21]">
      <seq>tcaaatctcaactctcgtcagtcgtctaacatacccgcagctcgtcgtccatcttctcttaaggctcaggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcattgctcgtgactcacgcctcacaggacgaatggctggaaagtctgtatcaataagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggatactgggagctaggagcctgcaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccatcgagaaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7428" stop="17221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7728" g_stop="7877" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="16921" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="377" r_length="227" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E286375" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7728" e_stop="7877"/>
          <exon e_start="16696" e_stop="16921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAA-AAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAAT</genome_strand>
        <mrna_strand>TCAAATCTCAACTCTCGTCAGTCGTCTAACATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCATTGCTCGTGACTCACGCCTCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTATCAATAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGATACTGGGAGCTAGGAGCCTGCAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCATCGAGAAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E378399" ref_strand="+" ref_description="SGN-E378399 	[TUS-32-H5]">
      <seq>aaatctcaactctcgtcagtcgtctaagatacccgcagctcgtcgtccatcttctcttaaggctcaggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcagtgctcgtgactcacgcctcgcaggacgaatggctggaaagtctgtagcaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaataggttttagcatccttcctttcttttccaacaacataatggaccaaagatttcctgctcacttgtcttgttctctttttgtgagtttaataactagtgttttgtttttcttattatgaaaacaaacaaaagatgttttggagcactaagttgttggtctaacaattttaaacattagattagatgagncaatgaataagaagaaaaagtgatggtctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7430" stop="17614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7730" g_stop="7877" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="17310" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="762" r_length="614" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="763" polyA_stop="772"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E378399" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7730" e_stop="7877"/>
          <exon e_start="16696" e_stop="17310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTC</genome_strand>
        <mrna_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGNCAATGAATAAGAAG-AAAAAGTGATGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E372996" ref_strand="+" ref_description="SGN-E372996 	[TUS-32-H5]">
      <seq>aaatctcaactctcgtcagtcgtctaagatacccgcagctcgtcgtccatcttctcttaaggctcaggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcagtgctcgtgactcacgcctcgcaggacgaatggctggaaagtctgtagcaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaataggttttagcatccttcctttcttttccaacaacataatggaccaaagatttcctgctcacttgtcttgttctctttttgtgagtttaataactagtgttttgtttttcttattatgaaaacaaacaaaagatgtttttggagcactaaagttgtgggtctaacaatttttaaacattaaattaaaatagccaaatgaatttaaaaaaaaaaagggattggtctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7430" stop="17587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7730" g_stop="7877" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="17299" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="756" r_length="608" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="782"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E372996" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7730" e_stop="7877"/>
          <exon e_start="16696" e_stop="17299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATG-TTTTGGAGCACT-AAGTTGTTGGTCTAACAA-TTTTAAACATTAGATTAGATGAG-CAAATGAATAAGAAGAAAAAA</genome_strand>
        <mrna_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E292895" ref_strand="+" ref_description="SGN-E292895 	[cLET-11-L19]">
      <seq>aaatctcaactctcgtcagtcgtctaagatacccgcagctcgtcgtccatcttctcttaaggctcaggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcagtgctcgtgactcacgcctcgcaggacgaatggctggaaagtctgtagcaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7430" stop="17258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7730" g_stop="7877" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="16958" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="411" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E292895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7730" e_stop="7877"/>
          <exon e_start="16696" e_stop="16958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATA</genome_strand>
        <mrna_strand>AAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E372995" ref_strand="-" ref_description="SGN-E372995 	[TUS-32-H5]">
      <seq>caggccagccactgctcagtcctcactgactgttaagtgctcgctgcccggaactgttcagtgctcgtgactcacgcctcgcaggacgaatggctggaaagtctgtagcaaaagcagttgggcgatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaataggttttagcatccttcctttcttttccaacaacataatggaccaaagatttcctgctcacttgtcttgttctctttttgtgagtttaataactagtgttttgtttttcttattatgaaaacaaacaaaagatgttttggagcactaagttgttggtctaacaattttaaacattagattagatgagcaaatgaataagaagaaaaaagtgatggtctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="7494" stop="17614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7794" g_stop="7877" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16696" g_stop="17310" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="699" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="710"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E372995" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372995" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7794" e_stop="7877"/>
          <exon e_start="16696" e_stop="17310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAGGTCAGTGCTCATCGCCTCTTTTCCTTCGTATGTGGGGATTGTGCTTTCCATGTTTGTTTTCAATTAACATATCATCCTCTAAGTTTGTCCTTGATGTTGTTTGTGGATCGACTGTTTTTGAATATGGAGTGATGAGCATCTCCTTCTTGTCAATCTTTACCATGTAGCTGCTCTCTCGTGTTGTTTCCTCCATCTCGATTTCGTTTTTGACTGCAGCCTCTTTGTTACAGCTAATTCTAACTGACTTTTCTACCAATTACTAGATAATTGGACTAATAATATTTAAGTAATATTAACCACACTTCGTGATGCTTTAGACTTCATGACTCAAGCGTGTCATTAGAAACTATAATGGCACTGTAAATTGTTATTTCCTTAAAATGAGAAAGAAGTTGCAGTAACTATGAGAATATCTTACATGAGTATACATATGAATGATTGATGTGTATGCTCACAAAATTGTTTCTTGTATAACTGATCTCTGTCGGAGCTATAATAGCATTTACATCTGCCACTAAACCATTAAAAAATTTTCACTTCACTTTCGATCATTAAAGCTCGCAGATAAAAAGAGATGAAAATTGATCAATTTACCTGTCTATACACTCCAATTTATATTCATGACCAAACACAATTTTAATTTTCATATATCTTTTTTCACTTTGAAACCATGAACTGTTTTATTAACAACATAATGAGGACTTATGCCTTCTGTACTCTGTTTGGAAGATCCTCTAATTCCTTTTTCGCCATTTAAACTCCCGCATCTAATGTCATTCTAAATACTTCAGCATATGTAAACGCCTATCTTTGAAGTTTGTAATTTCCTAATTCATTCGAATTTCATCCTTAAACTTGTCTATGAATCTACAGCTATATTAGTATGGTATTTTGAACTTACACTAAATAAGAGCACATAAAGAGGAGATGTTCAACATAATCAGTATCCTTGTTATAGTGCACACTTCTCATCCTCCAAGCATCTTCATTAGGCTAACCTTCCTTTTGTAATCAACCTGCAACAAACAGTGAGATATAGGATAAGTTGACTATTTAGATGACATATTTTGTTGTGAATCAGCCTTGTCCAATTAACCTTCTGGTAAACTATTTTTAGTTGAAGAGTTTGCTGATAGTAAACTTATCTGAGCTTAGTCTTCAAGAGAATGTACAGCTCATGATACTATTAAAGTGCAAAACTTGTCTATCCAAGTTCCTGGGACTATTTTCGAATTCCCTTCAGTCTTCAAATTCGAATTGTCATCTCATTTTATAGCATTGAGGCTGCACTAGCTGTTGTAGTTTGTTCCACATACAAATCATTTGTCTAGGGGACTGATAAAATAGGATGTCTTGCACTGCTGGTACATGTATAACTTGTGAATTCTATTGATGTAATATCAAATTTAAGGATACATTATTTGCTATGGCCTATGAAGATTCATTTTCAGTTGATAGATTCATATACATCCTCATCCTTTGGATACAGTCTGTTAGTGTGTTGTACTATTGTATTGCTGCTGCTGGTAGGTATTACTCTTAGTGTGTAATTAGTAATGTGTTGAAAGTTAACTTAGCTTGTTTGGTGTTATAAGTTATAACCACAATAATGCTCTTTGTTTGTTTTTGGGTTCCTTGTATCTGGAAAAAAAAAGTGAGACGTACTAACAACATAAAAAAGTGAACAAAAGTGATTGAATTTTAAAAATGTACCACTGTTTATTAAATTTGGTAAAAACGAACCAAAATTTGTAATAATCGACAAATTTATTTCAATTTGATTTGATTTCACATTTTTTTTCAAACTGAAATTTACAAACCGACGCCCACCCCTAGTTCCAGGTAGACCCTCGATTCAAAAGAAATGTCTCCGATGCAGGGCTGTAAGTATGATTGAAAATGGACCCAACTATCTATCGTTTTCATTACATTATTTATAGATTTTTTTAAAAAAAAAAATTGTGGCCCACATGCCAATTTTATTAAATTGAAAATGGCCCTAATAGACAGTGATCAGTTCAGAAATTGTTCAAAAAATAAGCAAATTCTAATTAAAATAAAGAACACTAAGTCTTATGCCTAAAATTTTGAAGGTGAAGTGAGAGTAAGACATTCTTGAAGCTTCTTCCGCTGTAAGTCTCTCCTCCTTGCCATTGCTGCTTGTTTATACTTCTATTTGTTGTTGTGCTTATTTTGTGTTCTTTTCTTGTTTCTCCATTGATCTCGCCTCGATTTACCTCCTTGGAGTTCTTCCCTTTGCTTTCGATTTTATCAAATCGCAGTTCTCTTGTTGTAGTCGGCTAGCACTACTAAAAACAGTGCTATCTAAATATTACCAACCTCAAATGGAGGTCAGTATTGTTAAAAAGAATAAAAAAATACAAAAACTATAGAAAACCGACTATAAATAGTCGGTTTTTATGCAAAATAAAGCGGGAAAAAAAATTTGGACCTCAGGAGGTCGGTATTTTTCGCAGAAAAAATGAATTACAATTAAAATCGACCTCTTGATGTCGGTTTTAAATAAAATAAATAAATAACCATATTTTATTTTTTCTCAATGAACTATAAAAAACAGAATTTAGAAATATTTTGATTTTATATTATTTAAATCGTCTTCCGGAGGACTTTTTTGATATGAAATACATTATCAATTAAAGAAATATCGATGATCAATTTAAGAAAATTTATATATTAGATTTGATATCGATTAACTTTTATTGATCGATAAAATTAAAGTTATATAATTTAAATTTATAGAATTAACTTGATCAATAAATTAAACTTCTATTGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTAGTTTTCATTTATCTTAAAATTTAATATCATGAGGTCGGCACATTTTTTATTATATGTAATTATTTTTAATAAAAGCGACATCCGGGGATCGGTTTATTAAAAATTGTTTATTCATCATAATTTTTGTATGAACTACGGTTATATGAATTAGAATATAATTATACTTATATTTTTAGAGTAATGTACAAATCTATCAGGCTATCGATGTAGATGTGAAGAGCTAACATATAATCTATTCGAATTTAAAATGCGAGATAGTATTATTATATATATATTTTTGATCTTAAATGTATATCGAGTGTAGTGATCCCTTCCTAATTATAATGACATGTCAAGGATATTTCATTCTGAGTATCAATCCAATCTGATTTTATGATCTCAACCATCCATACTTTCGTTAAAACGTAAGATCGAATCTTAGTCATTCATCTCTTTTTAAATCTACGATTAAGATCAAAACTTTACCTTCCTCTTTAACCTAAAACGACCAAAATTCCTAAAACTAATTCATTCTTCCTCTCCTACCTCCGCTTCTTCTCCCCTTCCCCTTTCCCTGCGTCCTCTCCATTTTTTGCCGGCGAGAGCAGCAGCCAGCGACTCATCCTGCCCCTCTCTCCGCCTCCCTCTTCTCCTCTTCTCTTTTTCTCCGAGCAGCAGCAGCTCCGGCAAGGACGGCAGTAGCAGCGCCAACAACTCCAACGCCCAGTGAACCTCCTACTGGCAAAAACTCCGCAACAGCGAGCCGCCAGACGCCGCTGCATTTCCTCCTTAGGCGACCTTCGAAATTCAACAAACCACTTGTATATTTTGGTGCATTGAAAAACGATCTTAACAGATCCGCCCGGTTAGTTTTATCTTCTAAAATTCTTGGTTAATGCTCAGATTATCTCTTCTTGTACATGTTTTAGGCGGATTCGTATGAATTTGTTCATTTGTTTTGGCATTATTTAAGTAGCATTATGATTTTGATCCAATCTTTCTTCAAGATTAGTTTCTCCATATGGCTGCCTTCTGTGAAAATGCTAGTCTTAATTGCTTGTGGCTGACTTTTGCAGTGATTCGATGAAATTGGGCATTAATTGAGTAATTTGCCAAAAAATGCATTTGATTGTTTCTATTGATTAATCTAAACCACCTTACTATTTTTATAATTGATTATTTGCTTTGCTATTAGAATCTGTTACCTTTTGTTTCAATAAGTTAAAGTTAGATGTCCCAGAAATAAATTGTGAAGCTATGTAATTTGATCCTTAACCTTTGCCTAAATATTTCTTTCCTTACCTGCTTTTATATTGCATTAATTGACTATCCTTAATTGTTTATTTGCTTGTTTTAAATAAATTAAAGTAGATTTTACTTGCTTTATTTTTGGTAAAATTGTGAATTATTATGTAAAATATTTCATTGATTTGGTAATGTTTAATCTAAGGAAAATATATTATAATTGTCCTCTTAATTTTTTCTGACGACATAATTGTCCTCTTAATTTATTCCCTTCCTTTAGTATTCTGCTCTCTCATCTAGTATATAGGCATGCCCGCTTTCATTCTTTGATAGACTTGAACATACCCTCACACTCTTAGACTCATACACTCACTCATTCATTCACCCTCACATTCTCTCATTGCTTATACGTTAATATTGCTCTCTACTCTTGAAATAATTAAGATTTCGGGAATAAGTTAAATTATATAATATCATTTAGTTGGTGAATATAGTGTTGAAATTAAGTTAAAATTAAGTTAAAACTAAACTAATTAGACTTATAAAGTTGTTAAGTTCTTCAAATAAGTTAAAATTATATAATGTGTTTTAGTTGGTGAATATAGTGTTGGAATTAAGTTAAAGCTAAACTAATTTTACTTAGAAAATTGTTAAGTTGTTTAACAAGTTAAATTGGTGAATATAGTATTGGAATTAAGTTAAAACTAAACTAATTAGACTTAGAAAGTTGTTTAGTTGTTATTATATAATGTGATTTAGTTGGTGAATATAGAGTTGGAATAAGTTAAAACTAAACTCGAACCCGGAGAAGAAGAAAGATGGATTGAGTCACGTGCTCAAGAGACATATGTAAGAACTCTATTCAAGCTAATCTTTTTTTCTTTCTCTTGTATATATTATATTCTTATTCGTAGAGTTCTTTGTTTAAATTACAAGATAGGTTTATACGAATATCTCAGGAATATTGTAGCACTCTACCTCTTGAGAGCCGGGACAGATCATTTACACAAGATAAAGTGAGAGGAAGAGAGACAATATGTATAATGTCTACGAATGTCGGAATCTAAAAAAATAAGAAATAAAAATATCGACCTCCGGAGGTCGGAATTTAAAAAATAAGAATCGGAATCTAAAAAATAAGAAATAAGAATACCGACTTTCGGAGGTCAGAATTTAAAAATTAAGAAAAAATAAAATTAAAACATACCGGCATCCGGAGGTCGGTATTCCACAATTTGAGAAGTAAATATTGTAACCTCCGGAAGACGAAAATAATAATAATAAAAATAAATAAATATATAAAGTGACCTCAGGAAGTTGGAAAATAAATAATGAATTTATCGACTTAAATTGAAACTGACCTCGAGAGGTCAGTAAATACAGACTTCCAGAGGTCGGAATTGAATAGAGCCCAAGCTTTTTCCGACCTAAGTTGGGAAGTCGACGACCTCTGGAGGTCGGTATTCACTGTTTTTAGTAGTGTAGATACGTTTTTATCCTTCATCACTCTTGTTTTCGTTTGTTTTTTGTCTCTTGCTCTTCCTGATCTATGATGTTGTGTTCTCCGATGCTTTTGCTAATCAGCCTAATCTATTGTATGCCTCTAGCTGAAAGCTCTGCTTCAACAAGTAGATTTGTTCTTTTCTTTTGTATTTGCTTGCTAAATACTTATTTTCCTTGTATTGGTTGTTTGTGCTTGTGTTCCCTCTGATGGTTGACCTTGTGTTTCCAGTATAACCCTTGGAGATTGTGTGCGGAGCAATATCTTAGATTCATACACAACCATTGCTTCTGCCTCTATGTTAGTAGTAATTCTTATCCGATCTGCTTGGGCGTAAATTGAATCTCCCTTATCGTCTCTAATAGAAAATCCATAGGAACTTTCACCTGGATTGCCATGACTTGCCCCGTCAGTGTTACGTTTGAGTCTTCCTGGAGGTGGTTATTCCCATCTTATAGCACAAAAATGAATCCTTGGTCTATATTTCTTCATGTATTGTAGTAGTGATGGCCAATCTTGTGGTATTAATTTCATCTGTGGGTATATAACTCTTATCATTTGATATGTTGTCTTCTGAACTTGGTATACCATTCTGTTGATTGTGACATCATTTCCATGTCTCCTAGAATTCCTTCTCTTCCACAACTCCCACATCATAAATGTTGGCATTGCTTTAAAAACTTTTGTAGTTTGTTTTCTGTAGGAGTTGTCCACCGTTCTGTTATAGCTTGTTGCAATTGCAATTCTTCAATGTTTATACCTACACAAGTAGAAAATTGTCTTTATAACTGTAAGGCTATAGGAGATGTTAGAAAAAGGTGAGACATAGTTTCTTGTGATTTTTTTTCAGAACACCAACACCTTGAGGCATTGTGCATCCTTAAGAACGTTAGGTTGTCATCAGTAGGAGTTCTCCTCTTTACCACCCTAGGAAAAAACCAATTTGGATTGGTAGCCCCTTCAACCATATATAGTCATAAATTTGAGTTGTTTCCTCCATTTTTCTTATCGCCTCCCAAGCAGTTTTCACACTAAATATACCAGTGTTGCTGCCCATTTACCAAGCCTTGTCATTATCGTCATTAGTTAAACTTGAACTGATGTTCTGGACAATGTAACCAACCATTTCTTCTGATAACAACCCTTGCAAAACGTTTCCGTAGGTTCCATTGCCCATTTACTATGAATTCCTTTACCTCCATTTCCTCCCAAATACCATGGCCTTTCTCTACAAAGTAAAGTGCTCCCTGTTTTGTCCAGTTATCATACCAGAGGATGGAGTTTCCTGCTTTTAATTGCCACCATATCTGATGTTCTGCCTCTACTCTGACTTCTATCAGTTTTTTCCACACATGTGATATTCCAGGCCCATAAGCTATAATTGGGTGGACTTTCTTGCAATACTTATTCCACATTTAGGTGCTCCATCTAGTCCTAGATATTCTAAAGTTCCACCATAGCTTTGCAAGAAGGGCCTTAGATATGTCATGAAGTGATCTAAATCCTAGACTCCCTTCATTCTTGGGAAGACACATCTTATCCCAAGCTACCCAATGTTTCCTTCTATCACCTGTAGAGTTACTCCAAAAGAATTTAGCAAATATCTTGTGGATTTGCTGAACCCCTTTAGGAGGGTTCATAGCAGAAAGCAAATAGACAGGTATTGTCTGCAAAACATGATTGACCAGAATGATTTTTCCCTCAAAGGTTAAGAATCTGTTCTGCTATGACATAACTCTCTTCATCATATTTTTAATGAGGTTTTCGTAATATATCACCTTCTACCATTGAAAGTAGGACATCCTAAGTATGTGAAGGGAAATGTCCCTTTTTTCATCCCTCTCTTCCTTGTTATCCAGTTTGTAATTGCAACAAAAAGTTTCTCATCTGCATAAAAACAGCTCTTTGAATCTTTGATCAACTCACCTGAAGTATCCTCGTATTTTTTAGAACCTTAATCATCATCTTTATGGCATGTGGGTCCGCAGAACAGAATAAGATTGTATCATCAGCATATGCAAGGTGGTTAATCTCTGGGCTCCACTTTGGCAATCCATATCCCTTGAATCTTTTGTTTGAGTAGAGATTATTTAGCCCTCTTGATAAAACTTCTGCAGCTATAATAAATAAAGTTGGAGACAGAGGATCACCCTGCTTGAGTCCTCTAGAGGAATGAGAAAAACCATGGGTTTGCCCATTCACTAACACTGAGTACCAATTATTAGATACTAGTCTCCAAATCATGTCAATTATCACCTCTGAGAAACCAAACTGCCTCAGTACGTTTGTTAGGAAAATTCAAGATATCCTAACATATACTTTGGTTATATCCACCTTAACCACTATGTTATGCAGCTTATTCCTCTTGTTGATGTCCCTGATGATCTTTTGTGTCAGCAGAACATTTTTTTATAATACTTCTACCTTTCACAAAGCCAGTCTGATATTTGGAGAATAGATTAGGTAGAACCACCAAGAACCTACCATGAAGAACTCTAGATATAATCTTATCAGCAAACATACTTAGGCTGATTGGCCTTAGGTCTGAAATTTTTTGAACCTCCTCCACCTTAGGGAATCAACACCAGATTTGTGTGTTAACAATCTTAGAAGTTCTTGTCCATAAAAAATGCTCAAACCATCCTAGTGATATCTTCCTTAATTATGCCCCAGCAAATTTGGAAGAAGTGCCCTGAGAAGCTATCAGGACCACTAGTGCTGTCAGCATTAAGATCAAATACCGCTAATTTAACTTCATAAGGTTGGAAGGGGAATAAGAGCCTCGTTCTGGTCCTGGGTAATGATGGGGATTCCATGTGTTTAACCAGAAAATGGTACACTTGAATTTGTCACGCGGATTGAGTTAACTCGTTAGTTCGTTTTAAGCAGATATATATTTTATTGAATAGGTTTATTAAGAACAAAAATGTACTGTACTAAGAAGGTGTGTATGGACATAGTTATACCAAATATTCGAGTTAAATATTTTTGCGGCAACAGTTAGTAGTTTTGATGGTTATTTCAGAGGGGGACATTTTATGAGAGTATCTTGCATTTTCAAACTCTTGTTTTATTTCCATTCGCTATATGTTGTGGCATCCACTTACAATCATGGAATAACCTTTGAACTTTTTCTTGATAACCAACCTAATTTCCATACATCTCATTTTAGTATTGCTTGATAAACTTGAAACCTCAGAAATTTTTTACGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTC</genome_strand>
        <mrna_strand>CAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E325912" ref_strand="+" ref_description="SGN-E325912 	[cTOC-12-C16]">
      <seq>aacgaatgggtggaaagtctgtagcaaaagcagttgggctatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctaataaagggagtttggggttactgagagcttggagcctggaaacctgtggggatgagtgctcgccatctagctcgtctgcgcaaggaagttgttgttgctggacaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="16397" stop="17193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16696" g_stop="16893" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E325912" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16696" e_stop="16893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATT</genome_strand>
        <mrna_strand>AACGAATGGGTGGAAAGTCTGTAGCAAAAGCAGTTGGGCTATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTAATAAAGGGAGTTTGGGGTTACTGAGAGCTTGGAGCCTGGAAACCTGTGGGGATGAGTGCTCGCCATCTAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E246515" ref_strand="+" ref_description="SGN-E246515 	[cLEF-45-K7]">
      <seq>agaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccaccgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaataggttttagcatccttcctttcttttccaacaacataatggaccaaagatttcctgctcacttgtcttgttctctttttgtgagtttaataactagtgttttgtttttcttattatgaaaacaaacaaaagatgttttggagcactaagttgttggtctaacaattttaaacattagattagatgagcaaatgaataagaagaaaaaagtgatggtctcataacttgttttgatagacttattttaagtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="16454" stop="17645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16754" g_stop="17345" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E246515" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16754" e_stop="17345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTCATAACTTGTTTTGATAGACTTATTTTAAGTATTTT</genome_strand>
        <mrna_strand>AGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCACCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTCATAACTTGTTTTGATAGACTTATTTTAAGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E295174" ref_strand="+" ref_description="SGN-E295174 	[cLET-20-J21]">
      <seq>aaaatacaaggatgagctttcaaagggagtttggggttactgggagcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacgatccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtgacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaataggttttagcatccttcctttcttttccaacaacataatggaccaaagatttcctgctcacttgtcttgttctctttttgtgagtttaataactagtgttttggttttcttattatgaaaacaaacaaaagatgttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="16466" stop="17533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16766" g_stop="17233" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E295174" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16766" e_stop="17233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAG</genome_strand>
        <mrna_strand>AAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGC-AAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGGTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E416075" ref_strand="-" ref_description="SGN-E416075 	[STM-22-O14]">
      <seq>aaaatgaaagccaggcaaaaattaaaagatacatgccaatgatggattcaatgactaatgaagaattggatacttccaacccaaagcttatgaccgactcccgaattatgcggatagctagggggtccggccaccaagtgcatgaggtaatggatatgatggaggaatacaaacgactggctaagatgtggagtaagatgaagggacttaagattccgaagaagggagagatgagtgccttgtctcgaaacatgaatgcacaacacatgagcaaagtcttgcctccccagatgttgaaacaaataggcggtatgggtgggttgcagaacttgatgaagcaaatgggttctgccaaggacatgatgggtggtatgggtggtatgtttggtggtggggacaagtaaacatgaaagcacaattaacaagttaaaactcaaagctaatttaggctggcaaatctcttgtttttgttaactggtaaagaacatcttaaccccagactttcttcttagtccttgtattagtggtcatagattttgaaattttaggaagcagatcatgtcaagttgtcaatagaaggatttggtaagattcatgtancttgagnaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="30670" stop="29391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30370" g_stop="30308" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30307" i_stop="30227" i_length="81">
            <donor d_prob="0.767" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30226" g_stop="29680" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="616" r_length="553" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E416075" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416075" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30370" e_stop="30308"/>
          <exon e_start="30226" e_stop="29680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAAAGCCAGGCAAAAATTAAACGATACATGACAATGATGGACTCAATGACTAATGAAGGCAAGTGATCTAATTCCGTATTTTCATGCATTAATTTGTTTTTAGTTTGATGTTCGATTTCAAGTTCCAATACAATTGCAGAATTGGATAGTTCCAACCCTAAGCTTATGACCGACTCCCGAATTATGCGGATAGCTAGGGGTTCCGGCCGCCAAGTGCATGAGGTAATGGATATGATGGAGGAATACAAACGACTGGCTAAGATATGGAGTAAGATGAAGGGACTTAAGATTCCAAAGAAGGGAGAGATGAGCGCCTTGTCTCGAAACATGAATGCACAACACATGAGCAAAGTCTTGCCTCCCCAGATGTTGAAACAAATAGGCGGTATGGGTGGTTTGCAGAACTTGATGAAGCAAATGGGTTCTGCCAAGGACATGATGGGTGGTATGGGTGGTATGTTTGGTGGTGGAGACAAGTAAACATGAAAGCACAATTAGC-AGTTAAAACTCAAAGCT--GGCA-AAT--CTTTTTTCTTTTTTTTGTTAACTGGTAAAGAACATCTTAACCCCAGAGTTTCCTCTTTCTCCTTGTATTAGTGGTCATAGATTTTGAAATTTTAGGAAGCAGATAATGTCAAATTTTCAATAGAAGGATTTGCTATGATTCATGTAGCTTGATGATTTTCTTT</genome_strand>
        <mrna_strand>AAAATGAAAGCCAGGCAAAAATTAAAAGATACATGCCAATGATGGATTCAATGACTAATGAAG.................................................................................AATTGGATACTTCCAACCCAAAGCTTATGACCGACTCCCGAATTATGCGGATAGCTAGGGGGTCCGGCCACCAAGTGCATGAGGTAATGGATATGATGGAGGAATACAAACGACTGGCTAAGATGTGGAGTAAGATGAAGGGACTTAAGATTCCGAAGAAGGGAGAGATGAGTGCCTTGTCTCGAAACATGAATGCACAACACATGAGCAAAGTCTTGCCTCCCCAGATGTTGAAACAAATAGGCGGTATGGGTGGGTTGCAGAACTTGATGAAGCAAATGGGTTCTGCCAAGGACATGATGGGTGGTATGGGTGGTATGTTTGGTGGTGGGGACAAGTAAACATGAAAGCACAATTAACAAGTTAAAACTCAAAGCTAATTTAGGCTGGCAAATCTCTTGTTTTTGTTAACTGGTAAAGAACATCTTAACCCCAGACTTTCTTCTTAGTCCTTGTATTAGTGGTCATAGATTTTGAAATTTTAGGAAGCAGATCATGTCAAGTTGTCAATAGAAGGATTTGGTAAGATTCATGTANCTTGAGNAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E479747" ref_strand="+" ref_description="SGN-E479747 	[cSTD-11-M17]">
      <seq>tggttcactcaaaaccctaaaatatctcataattcttattcttagccctaattagcgatcgttctgttccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggagggagcatatcgcgtgctctccagcagatgagcaatgctacaatcattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgcccttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccacaaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaagggaaacctagtattgtcatgtttgnttggtttgcaaggggtctggaaaaacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctttagtgtgtgctgatacatttagagctggtgctttcgatcaattgaagcagaatgccacaaaagccaagatacccttttatgggagctacacggagtcagaccctgtgaaaatagcagttgatggtgttgaaacatttaagaaggaaaatttgtgatctaatacttgttgataccagtggacgccacaaacaagaagctgctctttttgaagagatgcgacaagttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35967" stop="32630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35667" g_stop="35330" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="437" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33838" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="592" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33837" i_stop="33074" i_length="764">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33073" g_stop="32930" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="737" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E479747" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35667" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33838"/>
          <exon e_start="33073" e_stop="32930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTG-TTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAG-GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCAACAAAAGCCAAGATACCCTTTTATGGGAGGTATCTCCTCTTCTCAGTCTATTAGTGTTACCTTCTCTATGCATTCTAAGAAGCTTGAGAGGCTATAATCTGTTGATCATGAATGTTCTCCATCGTACTTTCTGAAGACATTCTACATACTGTCTAGTAAATTGATAAACAATGTCATCGGCATAGGGATCACATATTTTAAAGTTAATTTAGATAAGGAGTTGGAGGACAAAGTGAGCTGCATTTTTTCTTTGCCAAGACTTGTCAAAGAGATTACTTATTATGAGAAATACTTATTCTGAGTAGGATTGTATATACCTATTCCTATTCTAACACTTGTATTAAAAAGAAAAAACTTTCAAAGAGATTAAAGTCAATAGTTGTCAGCTGACTGGCAATCAGTATGCAATGTGTAAAGAAAATGAAATATTTCATTCTAATTTGGCTTAGGGTTGAATATATGTTTCGATTCAATTTTTATTTTCAATTACGGACAGAAGTCCTTAAGCTACCTGTTTTTTTTTTTCTCTGGAGTATCTTAAAGCTAGTTTGCTCAAGATCTCTTACCAGTGATATCCCTCTCTCTTGAAATGGGAATGGACATTTACTTGAACTCCTTTTTCCTAATTGCTTCAACCCTCGTGAAAAAGAAAAAGAACATCCTCATTTATTTCTGAATGGATTGAGTAGCCTGCTATTAGTAATTAACCATTTAGGTTGTTGAACTACGTTTCTTTTCTAAGTAAAACTGTAGGTAATGTTGTATTTTGATTTAATGTATGTTTCTGCAACAGCTACACGGAGTCAGACCCTGTGAAAATAGCAGTTGATGGTGTTGAAACATTTAAGAAGGAAAATT-GTGATCTAATAATTGTTGATACAAGTGGACGCCACAAACAAGAAGCTGCTCTTTTTGAAGAGATGCGACAAGTTGCTGA</genome_strand>
        <mrna_strand>TGGTTCACTCAAAACCCTAAA-A-TATCTCATAATTCTTATTCTTAGCCCTAATTAGCGATCGTTCTGTTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGAGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATCATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCCCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACAAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGGAAACCTAGTATTGTCATGTTTGNTTGGTTTGCAAG..........................................................................................................................................................................................................GGGTCTGGAAAAACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCCACAAAAGCCAAGATACCCTTTTATGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGGAGTCAGACCCTGTGAAAATAGCAGTTGATGGTGTTGAAACATTTAAGAAGGAAAATTTGTGATCTAATACTTGTTGATACCAGTGGACGCCACAAACAAGAAGCTGCTCTTTTTGAAGAGATGCGACAAGTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E480555" ref_strand="+" ref_description="SGN-E480555 	[cSTD-14-I22]">
      <seq>gttcactcaaaaccctaaaattatctcataattcttattcttagccctaattagcgatcgttctgttccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggagggagcatatcgcgtgctctccagcagatgagcaatgctacaatcattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgcccttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccacaaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaagggaaacctagtattgtcatgtttgttggtttgcaagggtctggaaaaacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctttagtgtgtgctgatacatttagagctggtgctttcgatcaattgaagcagaatgccacanaagccaagatacccttttatgggagctacacggagtcagaccctgtgaaaatagcagttgatggtgttgaaacatttaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35965" stop="32716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35665" g_stop="35330" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="435" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33838" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="589" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33837" i_stop="33074" i_length="764">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33073" g_stop="33016" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="647" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E480555" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35665" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33838"/>
          <exon e_start="33073" e_stop="33016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCAACAAAAGCCAAGATACCCTTTTATGGGAGGTATCTCCTCTTCTCAGTCTATTAGTGTTACCTTCTCTATGCATTCTAAGAAGCTTGAGAGGCTATAATCTGTTGATCATGAATGTTCTCCATCGTACTTTCTGAAGACATTCTACATACTGTCTAGTAAATTGATAAACAATGTCATCGGCATAGGGATCACATATTTTAAAGTTAATTTAGATAAGGAGTTGGAGGACAAAGTGAGCTGCATTTTTTCTTTGCCAAGACTTGTCAAAGAGATTACTTATTATGAGAAATACTTATTCTGAGTAGGATTGTATATACCTATTCCTATTCTAACACTTGTATTAAAAAGAAAAAACTTTCAAAGAGATTAAAGTCAATAGTTGTCAGCTGACTGGCAATCAGTATGCAATGTGTAAAGAAAATGAAATATTTCATTCTAATTTGGCTTAGGGTTGAATATATGTTTCGATTCAATTTTTATTTTCAATTACGGACAGAAGTCCTTAAGCTACCTGTTTTTTTTTTTCTCTGGAGTATCTTAAAGCTAGTTTGCTCAAGATCTCTTACCAGTGATATCCCTCTCTCTTGAAATGGGAATGGACATTTACTTGAACTCCTTTTTCCTAATTGCTTCAACCCTCGTGAAAAAGAAAAAGAACATCCTCATTTATTTCTGAATGGATTGAGTAGCCTGCTATTAGTAATTAACCATTTAGGTTGTTGAACTACGTTTCTTTTCTAAGTAAAACTGTAGGTAATGTTGTATTTTGATTTAATGTATGTTTCTGCAACAGCTACACGGAGTCAGACCCTGTGAAAATAGCAGTTGATGGTGTTGAAACATTTAAGAAG</genome_strand>
        <mrna_strand>GTTCACTCAAAACCCTAAA-ATTATCTCATAATTCTTATTCTTAGCCCTAATTAGCGATCGTTCTGTTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGAGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATCATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCCCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACAAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGGAAACCTAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAAACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCCACANAAGCCAAGATACCCTTTTATGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGGAGTCAGACCCTGTGAAAATAGCAGTTGATGGTGTTGAAACATTTAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E299524" ref_strand="+" ref_description="SGN-E299524 	[cLEW-20-I23]">
      <seq>tttggggaattgttgattcaaaaccctaaatattatctcatgattcttattcttagccctaattatcgatcatcatcgtccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggggggagcatatcgcgtgctctccagcagatgagcaatgctacaattattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccactaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaaacccagtattgtcatgtttgttggtttgcaagggtctggaaagacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctttagtgtgtgctgatacatttagagctggtgctttcgatcaattgaagcagaatgcaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35976" stop="33561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35676" g_stop="35330" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="447" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33861" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="578" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E299524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35676" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCAACAAAA</genome_strand>
        <mrna_strand>TTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E416074" ref_strand="+" ref_description="SGN-E416074 	[STM-22-O14]">
      <seq>caaacctctccatcgtcaccaatattatcttccccattcatcatttggggaattgttcactcaaaaccctaaaattatcccataattcttattcttagccctaattagcgatcgttctgttccaattcttgattcgataatcgatttgttaattgaagatggtgttagcagaattaggagggagcatatcgcgtgctctccagcagatgagcaatgctacaatcattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgcccttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccacaaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgngaagccttcttttacaccgaaaaaagggaaacctagtattgtcatgtttgttggtttgcaagggtctggaaaaacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctttagtgtgtgctgatacatttagagctggtgctttcgatcaattgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35984" stop="33575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35684" g_stop="35330" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="389" r_length="354" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33875" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="606" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E416074" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35684" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGC</genome_strand>
        <mrna_strand>ATTCATCATTTGGGGAATTGTTCACTCAAAACCCTAAA-ATTATCCCATAATTCTTATTCTTAGCCCTAATTAGCGATCGTTCTGTTCCAATTCTTGATTCGATAATCGATTTGTTAATTGAAGATGGTGTTAGCAGAATTAGGAGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATCATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCCCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACAAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGNGAAGCCTTCTTTTACACCGAAAAAAGGGAAACCTAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAAACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E268249" ref_strand="+" ref_description="SGN-E268249 	[cLEM-3-I4]">
      <seq>caatattcatcatttggggaattgttgattcaaaaccctaaatattatctcatgattcttattcttagccctaattatcgatcatcatcgtccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggggggagcatatcgcgtgctctccagcagatgagcaatgctacaattattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccactaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaaacccagtattgtcatgtttgttggtttgcaagggtctggaaagacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctttagtgtgtgctgatacatttagagctggtgctttcgatcaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35988" stop="33576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35688" g_stop="35330" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="459" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33876" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="575" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E268249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35688" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAG</genome_strand>
        <mrna_strand>CAATATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E318985" ref_strand="+" ref_description="SGN-E318985 	[cTOB-14-B6]">
      <seq>ttgttgattcaaaaccctaaatattatctcatgattcttattcttagccctaattatcgatcatcatcgtccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggggggagcatatcgcgtgctctccagcagatgagcaatgctacaattattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccactaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaaacccagtattgtcatgtttgttggtttgcaagggtctggaaagacaacaacatgtacaaagtatgcatattaccaccagaaaaaaggttggaaaccagctntagtgtgtgctgatacatttagagctggtgctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35967" stop="33587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35667" g_stop="35330" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="438" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33887" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="543" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E318985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35667" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCG</genome_strand>
        <mrna_strand>TTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTNTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E286832" ref_strand="+" ref_description="SGN-E286832 	[cLES-14-D17]">
      <seq>tatttttcagttccaaacctctccatcctcaccaatattcatcatttggggaattgttgattcaaaaccctaaatattatctcatgattcttattcttagccctaattatcgatcatcatcgtccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggggggagcatatcgcgtgctctccagcagatgagcaatgctacaattattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccactaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaaacccagtattgtcatgtttgttggtttgcaagggtctggaaagacaacaacatgtacaaagtatgcatattacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="36020" stop="33649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35720" g_stop="35330" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34194" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="491" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33991" g_stop="33949" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="534" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E286832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35720" e_stop="35330"/>
          <exon e_start="34293" e_stop="34194"/>
          <exon e_start="33991" e_stop="33949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTCAGTTCCAAACCTCTCCATCCTCACCAATATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAGGTGAGTTGATACAACTTTGTACTCTTGATTTATATCATATGATACCTTAACAATTTGGTGACTACCACTTAACTAAGTCACTTTCAAAGTGGCTATAGGAATTTGAGTGAGGACATATGTCTAATGCCCTTCCATTTTTCTCATTCATCTTTTTCACAATTTAAAATGGATACCCTTATTTATTTATAATTTATTATTATAGGGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCA</genome_strand>
        <mrna_strand>TATTTTTCAGTTCCAAACCTCTCCATCCTCACCAATATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAG..........................................................................................................................................................................................................GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E326545" ref_strand="+" ref_description="SGN-E326545 	[cTOC-17-D19]">
      <seq>aattgttgattcaaaaccctaaatattatctcatgattcttattcttagccctaattatcgatcatcatcgtccaattcttgattcgataatcgatttgttaattcaagatggtgttagcagaattaggggggagcatatcgcgtgctctccagcagatgagcaatgctacaattattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccactaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaaaccccgtattgtcatgtttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35969" stop="33903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35669" g_stop="35330" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34203" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="431" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E326545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35669" e_stop="35330"/>
          <exon e_start="34293" e_stop="34203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTG</genome_strand>
        <mrna_strand>AATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCCGTATTGTCATGTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E310609" ref_strand="+" ref_description="SGN-E310609 	[cLEZ-19-E21]">
      <seq>tcgatttgttaattcaagatggggtgatcagatttaggggggagcatatctcgtgctctccagcagatgagcaatgctacatttattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgctcttcttcaagctgatgttcagtttaagctatgttcgtgatatgaccactaatattaagaaaaatggcaatcttgacgatgttgctgctggacataacaacgcgtcggatcatccaacaggctgtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35878" stop="33926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35578" g_stop="35330" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34226" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="319" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E310609" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35578" e_stop="35330"/>
          <exon e_start="34293" e_stop="34226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCT-TGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAA-GCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAA</genome_strand>
        <mrna_strand>TCGATTTGTTAATTCAAGATGGGGTGATCAGATTTAGGGGGGAGCATATCTCGTGCTCTCCAGCAGATGAGCAATGCTACATTTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTATGTTCGTGATATGACCACTAATATTAAGAAAAATGGCAATCTTGACGATGTTGCTGCTGGACATAACAACGCGTCGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E438242" ref_strand="+" ref_description="SGN-E438242 	[cSTA-6-P9]">
      <seq>caaacctctccatcgtcaccaatattatcttccccattcatcatttggggaattgttcactcaaaaccctaaaattatcccataattcttattcttagccctaattagcgatcgttctgttccaattcttgattcgataatcgatttgttaattgaagatggtgttagcagaattaggagggagcatatcgcgtgctctccagcagatgagcaatgctacaatcattgatgagaaagttctgaacgaatgcctcaatgaaatcactcgtgcccttcttcaagctgatgttcagtttaagcttgttcgtgatatgaccacaaatattaagaaaattgtcaatcttgacgatcttgctgctggacataacaagcgtaggatcatccaacaggcggtttttaatgagctctgcaaaatattggatcctgggaagccttcttttacaccgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="35984" stop="33933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35684" g_stop="35330" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="389" r_length="354" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34293" g_stop="34233" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="450" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E438242" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35684" e_stop="35330"/>
          <exon e_start="34293" e_stop="34233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAGGTTCGTTCGTTCGTTTACTTTTAAGTTGGAAACCATTGTTGAATGAAGTAGTTTGCTTATTTTGGATACACTTTTCTTGCTGAAAATTGAAACATTGCTTAGTAATTATATATACTGAATTGTTCGTCTTACATGCTGTCAGTTCCTCTCACGTTTGAATGATATACAAGTTAGACTTAGAACTTTGATGGCAGAAATGTTGCGAGTATGGAGTGAAAGAACCACCATTCAACTTGGAAGTAGAACAAATACTCAAAAGCTAATAACTACAGTATAAAGAATTAACTTAAAGAGTTAAAATTATAAAGATAGATCCTCATTCACCTAGTGACCTTGTCTTTCTTTGTGCAATAGCCAATGCAAATTTCTGAAAAATTCTTGCAAGTTAAGATGCTCCATTATAATATCTTCCTCAGTAATATCATGGACCAACTTAGCAACACACTCATAGAATCTGTTTCAAACTTCTGAATTTAGTAAGTCATTCTCAGCTGCACATATAAATAAATTTTAAGGTTTATAGGTTTAAACTTTATAAGTATCAATCTTAAACACATTGTATTCTTAAAGTTATAGGTTTATATATATTATTTATTGCAATTTCAGTGTATGCTTACTCATAAAATTATGCTCTGCAAAAGTATTGGGTTCCGATGAATCTAGTAGTTTAAAGCTTCATCCTCCCCTGCTTGTTTAGTATGTGATACACTTTCAGATGTAACCCCCAAACATTACTTCAAACAAAACTTACTGTAGATTTATAAAAGTTTAAGGTGCTATCGTGTGACAATCTTCAAGACTAGGTAAAGAAATCTCATGTTTATTCTATTGAAGAGAACAAAAAAGGAGAATAAGATCTGAAGAAGAAATAAGAGAAGAGAAAGGGATAAAAGGCTGAAGAAGAAAATGGCCGCAGCAGCTTGAACTCGAAGAAGAAAGAAAAAAAAGAACTGCCAGCAAATACACACTCACTTGCTTTTTACAACTCTCTCACATTCTTTTATTGACCTAAGATTAAAAAATTTCTCATGTGTAGGCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAA</genome_strand>
        <mrna_strand>ATTCATCATTTGGGGAATTGTTCACTCAAAACCCTAAA-ATTATCCCATAATTCTTATTCTTAGCCCTAATTAGCGATCGTTCTGTTCCAATTCTTGATTCGATAATCGATTTGTTAATTGAAGATGGTGTTAGCAGAATTAGGAGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATCATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCCCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACAAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E354383" ref_strand="+" ref_description="SGN-E354383 	[cTOS-17-A14]">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="39956" stop="38701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39657" g_stop="38895" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E354383" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39657" e_stop="38895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGAGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTACCTCCAGGGCTGTCTGGAGTGCATCCGGTATTCCATGTGTCGATGTTAAAAAGATACCATGGGGATGGGAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTAGCAGAAGCGACGGACCCCACGATGGACCGTCAAGGGCACGACGGACCGTCGCAGG-GTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 	[LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="39418" stop="40195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39718" g_stop="39894" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39718" e_stop="39894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATGTCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCGCACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 	[TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="40899" stop="42211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41199" g_stop="41911" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41199" e_stop="41911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATTCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 	[TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="40899" stop="42094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41199" g_stop="41794" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41199" e_stop="41794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATTCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 	[cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="40899" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41199" g_stop="41724" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41199" e_stop="41724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAAAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATTCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 	[TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="40970" stop="42248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41949" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATTCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTTTAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 	[cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="40970" stop="41928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41270" g_stop="41628" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41270" e_stop="41628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 	[cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="41419" stop="42677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41719" g_stop="42377" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41719" e_stop="42377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTTTAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATAATACGTACCGGATTGGAAGTGTAGTTACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 	[cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="43516" stop="41507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43216" g_stop="43030" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43029" i_stop="42285" i_length="745">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42284" g_stop="41771" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43216" e_stop="43030"/>
          <exon e_start="42284" e_stop="41771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGTCTAAGTTTTGTGCACTATCCAGATATGCCACTCAACTCTGCTTCAGTTCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGTTTCGGAAAGGAGGTGAGTTTAATGGTTCTTACACTAGGGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGATGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCCTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTAACTACACTTCCAATCCGGTACGTATTATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTAAACCCCCTTATAGAATGACTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 	[cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="41488" stop="42849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41788" g_stop="42549" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41788" e_stop="42549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTTTAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATAATACGTACCGGATTGGAAGTGTAGTTACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 	[cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="41488" stop="42748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41788" g_stop="42448" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41788" e_stop="42448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTTTAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATAATACGTACCGGATTGGAAGTGTAGTTACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 	[cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="41715" stop="42857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42015" g_stop="42557" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42015" e_stop="42557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATAATACGTACCGGATTGGAAGTGTAGTTACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="41893" stop="42821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42191" g_stop="42521" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42191" e_stop="42521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 	[cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42098" stop="43257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42398" g_stop="42957" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42398" e_stop="42957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAA-TATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 	[cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42102" stop="43466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42402" g_stop="43166" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42402" e_stop="43166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACCTCCTTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GAACTGAAGCAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGA-AAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTGAA-CAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 	[cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42182" stop="43572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42482" g_stop="43272" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42482" e_stop="43272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACCTCCTTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGAACTGAAGCAGAGTTGAGTGGCATATCTGGATAGTGCACAAAACTTAGACTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAA-TTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 	[cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42184" stop="43318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42484" g_stop="43018" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42484" e_stop="43018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACCTCCTTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAA-TTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 	[cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42258" stop="43556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42558" g_stop="43256" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42558" e_stop="43256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACCTCCTTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGAACTGAAGCAGAGTTGAGTGGCATATCTGGATAGTGCACAAAACTTAGACTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAA-TTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 	[cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42820" stop="44139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43120" g_stop="43839" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43120" e_stop="43839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGAACTGAAGCAGAGTTGAGTGGCATATCTGGATAGTGCACAAAACTTAGACTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTAAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTTCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGTCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCACGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTTCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 	[cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="42823" stop="44086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43123" g_stop="43786" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43123" e_stop="43786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGAACTGAAGCAGAGTTGAGTGGCATATCTGGATAGTGCACAAAACTTAGACTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTAAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTTCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGTCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCACGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 	[cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="43178" stop="44211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43478" g_stop="43910" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43478" e_stop="43910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGTCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCACGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTTCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTTCCCCTAGAAGACGTCCTCCCACGACCTCTTCCACGACCCCTCGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 	[cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="44502" stop="43617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44202" g_stop="43917" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44202" e_stop="43917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGACGCCTTTACCTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCCAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 	[cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="45000" stop="43675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44700" g_stop="43975" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44700" e_stop="43975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAATGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGCCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG-TTTAGTAATTTAAAGGTAGATATTCTTGTGATGATGACTTCCAGATTTTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTAAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCCTTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGACGCCTTTACCTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCCAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 	[cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="45000" stop="43750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44700" g_stop="44050" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44700" e_stop="44050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAATGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGCCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG-TTTAGTAATTTAAAGGTAGATATTCTTGTGATGATGACTTCCAGATTTTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTAAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCCTTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGACGCCTTTACCTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 	[cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="45000" stop="43825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44700" g_stop="44125" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44700" e_stop="44125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAATGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGCCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTTTTAGATACTCTTAG-TTTAGTAATTTAAAGGTAGATATTCTTGTGATGATGACTTCCAGATTTTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGA--TTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTAAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCCTTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGACGCCTTTACCTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAA-GTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAAT-AGATGTTTAATAATAGTAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 	[cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="45160" stop="44325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44860" g_stop="44625" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44860" e_stop="44625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 	[cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="45651" stop="44416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45351" g_stop="45088" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45087" i_stop="44974" i_length="114">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44973" g_stop="44716" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="515" r_length="257" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45351" e_stop="45088"/>
          <exon e_start="44973" e_stop="44716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCAGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGATACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCAGAGTGTCACATTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATG..................................................................................................................GATC-GGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E472106" ref_strand="+" ref_description="SGN-E472106 	[cSTB-27-D1]">
      <seq>atgacacagcatttcctacgtgttactcaagtcattcgttcatttcaccttcagttaggaaacttccacaccttcggactttattcttctatcgttgctttagtaacaatcctcagcccattccaggatttctagcccaattagggcccactttgcaaacactagttttaagggaaaatgggttcacagggaccattcctaatgaattgggtaacctaactcatttgagagttctagatcttcacaaaaacaatcttaatggttcaataccgatctctctgggccggatcatcggtttgaagtcattagatttgagtgacaacaaactaaccggttcaattccaagtttaaccttccctcagttaaatatcttggaccttaaccaaaatcaccttacgggttcaattccatccacactcatgagctgtcattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="54948" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54648" g_stop="54215" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E472106" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54648" e_stop="54215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACACAGCGTTTCCTACGTGCGACTCGACTCATTCCTTCATTTCACCTTCGGTTAGAAAACTTCCGCACCTTCGGATTTTGTTCTTCTATCGTTGCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTTTAGCCCAATTACGGCCCACTTTGCAAACACTAGTGTTAAGGGAAAATGGGTTCACAGGGCCCATTCCTAATGAACTGGGTAACCTAACCCGTTTGAGAGTTCTGGATCTTCACAAAAACAATCTTGATGGTTCAATACCCATCTCTCTGGGTCGGATCACCGGTTTGAGGTCATTAGATTTGAGTGACAACAAACTAACCGGTTCTATTCCGAGTTTAACTTTCCCTCAGTTGAATATCTTGGACCTCAACCAAAATCACCTTACGAGTTCAATTCCATCCACACTCATGAGCTGTCATTCG</genome_strand>
        <mrna_strand>ATGACACAGCATTTCCTACGTGTTACTCAAGTCATTCGTTCATTTCACCTTCAGTTAGGAAACTTCCACACCTTCGGACTTTATTCTTCTATCGTTGCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTCTAGCCCAATTAGGGCCCACTTTGCAAACACTAGTTTTAAGGGAAAATGGGTTCACAGGGACCATTCCTAATGAATTGGGTAACCTAACTCATTTGAGAGTTCTAGATCTTCACAAAAACAATCTTAATGGTTCAATACCGATCTCTCTGGGCCGGATCATCGGTTTGAAGTCATTAGATTTGAGTGACAACAAACTAACCGGTTCAATTCCAAGTTTAACCTTCCCTCAGTTAAATATCTTGGACCTTAACCAAAATCACCTTACGGGTTCAATTCCATCCACACTCATGAGCTGTCATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E344313" ref_strand="+" ref_description="SGN-E344313 	[cTOF-16-O14]">
      <seq>atattccaaaaatggccctttttctctcatacaaatacctctactactactatcttttttcttctttcctctagggttgtcattcaccgtcataatgtcggactccggtgctctagtcgatgctccacaaaccggcttctcgatgaataacaatcgtgcacgaaccgatcctcgtgagcaagaagccgtttacgacattatgagggctacggggaacgattgggccatcgatatccctgatgtttgtcgtggtcgatggcatggtattgagtgcatgccggataatgacaatgtgtaccacgttgtctcactttccttcggtgcattgtccgatgacacagcgtttcctacgtgcgactcgactcattccttcatttcaccttcggttagaaaacttccgcaccttcggattttgttcttctatcgttgctttagtaacaatcctcagcccattccaggatttttagcccaattacggcccactttgcaaacactagtgttaagggaaaatgggttcacagggcccattcctaatgaactgggtaacctaacccgtttgagagttctggatcttcacaaaaacaatcttgatggttcaatacccatctctctgggtcggatcaccggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="55281" stop="54052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54981" g_stop="54352" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E344313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54981" e_stop="54352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCCAAAAATGGCCCTTTTTCTCTCAATACAAATACCTCTACTACTACTATCTTTTTTCTTCTTTCCTCTAGGGTTGTCATTCACCGTCATAATGTCGGACTCCGGTGCTCTAGTCGATGCTCCACAAACCGGCTTCTCGATGAATAACAATCGTGCACGAACCGATCCTCGTGAGCAAGAAGCCGTTTACGACATTATGAGGGCTACGGGGAACGATTGGGCCATCGATATCCCTGATGTTTGTCGTGGTCGATGGCATGGTATTGAGTGCATGCCGGATAATGACAATGTGTACCACGTTGTCTCACTTTCCTTCGGTGCATTGTCCGATGACACAGCGTTTCCTACGTGCGACTCGACTCATTCCTTCATTTCACCTTCGGTTAGAAAACTTCCGCACCTTCGGATTTTGTTCTTCTATCGTTGCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTTTAGCCCAATTACGGCCCACTTTGCAAACACTAGTGTTAAGGGAAAATGGGTTCACAGGGCCCATTCCTAATGAACTGGGTAACCTAACCCGTTTGAGAGTTCTGGATCTTCACAAAAACAATCTTGATGGTTCAATACCCATCTCTCTGGGTCGGATCACCGGTT</genome_strand>
        <mrna_strand>ATATTCCAAAAATGGCCCTTTTTCTCTC-ATACAAATACCTCTACTACTACTATCTTTTTTCTTCTTTCCTCTAGGGTTGTCATTCACCGTCATAATGTCGGACTCCGGTGCTCTAGTCGATGCTCCACAAACCGGCTTCTCGATGAATAACAATCGTGCACGAACCGATCCTCGTGAGCAAGAAGCCGTTTACGACATTATGAGGGCTACGGGGAACGATTGGGCCATCGATATCCCTGATGTTTGTCGTGGTCGATGGCATGGTATTGAGTGCATGCCGGATAATGACAATGTGTACCACGTTGTCTCACTTTCCTTCGGTGCATTGTCCGATGACACAGCGTTTCCTACGTGCGACTCGACTCATTCCTTCATTTCACCTTCGGTTAGAAAACTTCCGCACCTTCGGATTTTGTTCTTCTATCGTTGCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTTTAGCCCAATTACGGCCCACTTTGCAAACACTAGTGTTAAGGGAAAATGGGTTCACAGGGCCCATTCCTAATGAACTGGGTAACCTAACCCGTTTGAGAGTTCTGGATCTTCACAAAAACAATCTTGATGGTTCAATACCCATCTCTCTGGGTCGGATCACCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E369542" ref_strand="-" ref_description="SGN-E369542 	[TUS-25-D6]">
      <seq>gccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctccaaccttatactgtgaagtatctagttatggtgtctttactagttggtttgtaatttgtatagaactttgatacttcacttgtggcatgcagcaaaaacaagctcttgataaaaactcttgtattttgaatatttacacctagttcaaagtgagttaatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59301" stop="57374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59001" g_stop="58956" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="159" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58100" g_stop="57675" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="696" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="707"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E369542" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369542" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59001" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAGCAAAAACAAGCTCTTGATAAAAACTCTTGTATTTTGAATATTTACACCTAGTTCAAAGTGAGTTAATTTCAAC</genome_strand>
        <mrna_strand>GCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAGCAAAAACAAGCTCTTGATAAAAACTCTTGTATTTTGAATATTTACACCTAGTTCAAAGTGAGTTAATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E613211" ref_strand="+" ref_description="SGN-E613211 	[62982]">
      <seq>cgggagttgagccaggatggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggacggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccaaattctcccgagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggaataactttcagtacatatatacgactgctgttcatagcttagtgttatcgatggaagtctttcacacgtgtgccgatttgatttccactacttacctttgtgataaagaaaatgtctagaattactaaaaggaaacacttgaatctccaaccttatactgtgaagtatctagttatggtgtctctactggttggtttgtatacaactttgatacttcacttttggcatgcagcaaaaacaagctcttgataaaactctgtatttttcaatatttacacctagttcaaagtgaacaaaaaaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="58581" stop="57387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58281" g_stop="58180" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58100" g_stop="57691" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="506" r_length="404" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="521"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E613211" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58281" e_stop="58180"/>
          <exon e_start="58100" e_stop="57691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGG-AA----TGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAGCAAAAACAAGCTCTTGATAAAAACTCTTGTATTTTGAATATTTACACCTAGTTCAAA</genome_strand>
        <mrna_strand>CGGGAGTTGAGCCAGGATGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGACGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAAATTCTCCCGAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGAATAACTTTCAGTACATATATACGA--C-TGCTGTTCATAGCTTAGTGTTATCGATGGAAGTCTTTCACACGTGTGCCGATTTGATTTCCACTACTTACCTTTGTGATAAAGAAAATGTCTAGAATTACTAAAAGGAAACACTTGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTC--T-CTA-CTGG-TTG--GTTTGTATACAACTTTGATACTTCACTTTTGGCATGCAGCAAAAACAAGCTCTTGAT-AAAACTCTGTATTTTTCAATATTTACACCTAGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E297550" ref_strand="+" ref_description="SGN-E297550 	[cLET-28-E9]">
      <seq>gctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctccaaccttatactgtgaagtatctagttatggtgtctttactagttggtttgtaatttgtatagaactttgatacttcacttgtggcatgcaacaaaaacaagctcttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59323" stop="57425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59023" g_stop="58956" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="181" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="292" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58100" g_stop="57719" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="674" r_length="382" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E297550" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59023" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAGCAAAAACAAGCTCTTGATAAAAACTCTTG</genome_strand>
        <mrna_strand>GCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAACAAAAACAAGCTCTTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E210755" ref_strand="-" ref_description="SGN-E210755 	[cLEC-68-O15]">
      <seq>atgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatggaatgggatggtccctatagactacaatttcaagtccgcaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctccaaccttatactgtgaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59159" stop="57523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58972" g_stop="58956" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="130" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="241" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58100" g_stop="57823" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="519" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="536"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E210755" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210755" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58972" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAA</genome_strand>
        <mrna_strand>ATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATGGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCGCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E238648" ref_strand="-" ref_description="SGN-E238648 	[cLEL-9-G21]">
      <seq>ccaaggcttggagaaataaaccaactgaagttttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgaagtatcttgatcacaaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctccaaccttatactgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59083" stop="57523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58783" g_stop="58743" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="154" r_length="113" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58100" g_stop="57828" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="427" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="445"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E238648" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238648" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58783" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCG-AGTATCTTGATCAC-AAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACT</genome_strand>
        <mrna_strand>CCAAGGCTTGGAGAAATAAACCAACTGAAGTTTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAAGTATCTTGATCACAAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E239150" ref_strand="-" ref_description="SGN-E239150 	[cLEL-9-G21]">
      <seq>tgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctccaaccttatcctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="58557" stop="57523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58257" g_stop="58180" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58100" g_stop="57828" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="351" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="369"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E239150" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58257" e_stop="58180"/>
          <exon e_start="58100" e_stop="57828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACT</genome_strand>
        <mrna_strand>TGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E217261" ref_strand="-" ref_description="SGN-E217261 	[cLEL-21-N17]">
      <seq>gtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatgaatctcctnccttataaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59087" stop="57523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58787" g_stop="58743" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="156" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58100" g_stop="57833" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="424" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="447"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E217261" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58787" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTT</genome_strand>
        <mrna_strand>GTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCTNCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E279876" ref_strand="+" ref_description="SGN-E279876 	[cLER-8-E21]">
      <seq>tcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcgatggaagtctttcacacgtgcgtgtattcgatttcaactatttacctttgtgataaagaaaatgtgtagaattactaaaaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59138" stop="57546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58838" g_stop="58743" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="207" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58100" g_stop="57846" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="462" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E279876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58838" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATG</genome_strand>
        <mrna_strand>TCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E289815" ref_strand="+" ref_description="SGN-E289815 	[cLET-9-H17]">
      <seq>gtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgatgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgatgtttatagtttagtgttatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59374" stop="57631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59207" g_stop="59200" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="122" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="235" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="346" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58100" g_stop="57931" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="516" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E289815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59207" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGA</genome_strand>
        <mrna_strand>GTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGATGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E290764" ref_strand="+" ref_description="SGN-E290764 	[cLET-10-P11]">
      <seq>ggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatatacgactcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59990" stop="57653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59690" g_stop="59655" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="121" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="200" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="314" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="427" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="538" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58100" g_stop="57953" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="686" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E290764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59690" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGAT</genome_strand>
        <mrna_strand>GGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E300414" ref_strand="+" ref_description="SGN-E300414 	[cLET-45-A16]">
      <seq>tgctgggtttgaagagatctctatcagatcggatgaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatggggatggaggtgatcgttgcaatcttgatctaataccgggatgcattgatccagattctccccagtataatccactagccaatgtagatgatggatcttgtccaccatattcagattctgaggattaactttcagtacatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59363" stop="57664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="141" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="254" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="365" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58100" g_stop="57964" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="502" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E300414" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="57964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATA</genome_strand>
        <mrna_strand>TCGG-ATGAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGGGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAATACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E619864" ref_strand="+" ref_description="SGN-E619864 	[70559]">
      <seq>ttagatgtcatccagctacaaggaaactagtaaggattagtaagggtatagttgctgcggccgttgcaacttcccctgcagaggaaatcaaagaatatgctcttccttcatgggctaaatttgaccttggaaaatcaccagtatattggaaaacaatgaatggtcttcccccaactgcaggagagagactgaagcttttttacaatccagctgcaaacaatatggttcctaatgaagattttggaatcgcttttaatggaggtttcaaccaacctatcatgtgcggtggtgaacctaggataatgctccagaaaatcagaggaaaagccgatcctcctatctatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcgttcacaaatggcaccgaatgggatggtccgtatagactacaatttcaagttcccaaggcttggagaaataaaccaactgaattcttcactgagggtcttgcacgggagttgagccaggatggcgcctgtgacagggcaatcttcccagactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtactgggatgcattgatccaaattctcccgagtataatccactagccaatgtagatgatggatcttgtccaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60046" stop="57700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59748" g_stop="59655" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="179" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="258" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.774" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="372" r_length="114" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="485" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="596" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58100" g_stop="58000" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="697" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E619864" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59748" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="58000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATA</genome_strand>
        <mrna_strand>TTAGATGTCATCCAGCTACAAGGAAACTAGTAAGGATTAGTAAGGGTATAGTTGCTGCGGCCGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGCTCTTCCTTCATGGGCTAAATTTGACCTTGGAAAATCACCAGTATATTGGAAAACAATGAATGGTCTTCCCCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAACAATATGGTTCCTAATGAAGATTTTGGAATCGCTTTTAATG..................................................................................................................................GAGGTTTCAACCAACCTATCATGTGCGGTGGTGAACCTAGGATAATGCTCCAGAAAATCAGAGGAAAAGCCGATCCTCCTATCTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCGTTCACAAATGGCACCGAATGGGATGGTCCGTATAGACTACAATTTCAAGTTCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTGCACGGGAGTTGAGCCAGGATGGCGCCTGTGACAGGGCAATCTTCCCAGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACTGGGATGCATTGATCCAAATTCTCCCGAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E285899" ref_strand="+" ref_description="SGN-E285899 	[cLES-13-G9]">
      <seq>ctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatggaggtgatcgttgcaatcttgatctagtaccgggatgcattgatccagattctccccagtataatccactagccaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="58558" stop="57723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58258" g_stop="58180" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58100" g_stop="58023" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="157" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E285899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58258" e_stop="58180"/>
          <exon e_start="58100" e_stop="58023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGGGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTA</genome_strand>
        <mrna_strand>CTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA...............................................................................GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E326054" ref_strand="+" ref_description="SGN-E326054 	[cTOC-16-I11]">
      <seq>ccaaaatggctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgctatggttggtaacttgaatgtggatngggagtgatcgtgcaatcttgatctagtaccgggatgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60730" stop="57758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60430" g_stop="60335" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="217" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="381" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="495" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="608" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58290" g_stop="58180" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="719" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58100" g_stop="58058" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="762" r_length="43" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E326054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60430" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58180"/>
          <exon e_start="58100" e_stop="58058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGAGTAAGTAGATTCATCTTTCTCTATATATTTTTATTCGAGAAACCTAGTACTGATAAGAAGGGACACGATTCTAATGCAGG-GTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATC</genome_strand>
        <mrna_strand>CCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATNGG...............................................................................GAGTGATCG-TGCAATCTTGATCTAGTACCGGGATGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E338996" ref_strand="+" ref_description="SGN-E338996 	[cTOF-6-C24]">
      <seq>acaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggaggggtgcctgtgacagggcaatcttcccggcctcgagtatcttgatcacaagatgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60710" stop="57906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60410" g_stop="60335" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="197" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="282" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="361" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="475" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="588" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58290" g_stop="58206" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="674" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E338996" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60410" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGA-GGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTA</genome_strand>
        <mrna_strand>ACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGGTGCCTGTGACAGGGCAATCTTCCCGGCCTCGAGTATCTTGATCACAAGATGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E287416" ref_strand="+" ref_description="SGN-E287416 	[cLES-15-B5]">
      <seq>gcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatcacaagatgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59992" stop="57906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59692" g_stop="59655" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="123" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="202" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="316" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="429" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58290" g_stop="58206" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="514" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E287416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59692" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTA</genome_strand>
        <mrna_strand>GCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E343823" ref_strand="+" ref_description="SGN-E343823 	[cTOF-12-C12]">
      <seq>tccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60705" stop="57918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60405" g_stop="60335" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="192" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="277" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="356" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="470" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="583" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58290" g_stop="58218" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="656" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E343823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60405" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCA</genome_strand>
        <mrna_strand>TCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E369543" ref_strand="+" ref_description="SGN-E369543 	[TUS-25-D6]">
      <seq>tcgtgccgaattcggcacgagaaatggctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60730" stop="57919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60433" g_stop="60335" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="114" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="235" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="320" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="399" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="513" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="626" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58290" g_stop="58219" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="698" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E369543" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60433" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATC</genome_strand>
        <mrna_strand>CACGAGAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E294121" ref_strand="+" ref_description="SGN-E294121 	[cLET-13-D17]">
      <seq>tgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtctctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacacaggagttgagccaggagggtgcctgtgacagggcaatcttcccggactcgagtatcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60720" stop="57920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60420" g_stop="60335" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="207" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="292" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="371" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="485" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="598" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58290" g_stop="58220" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="669" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E294121" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60420" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
          <exon e_start="58290" e_stop="58220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAATTGTTGGAGTCCCACGTCGTTTGTGGGATGGTAATTTGGTCTCTTTATTTCTTTATCATCTATCCATGTTACTCTTGTGCTCGAGGAAAAAAAATGTAACAAGGTCGTCCTAACTGGTTCACAAGGGATTCCTTGTTACCTGTCATGTACTAGGGTATCAGAGCCTAAGCTAGTGATGCTATCGGCCACTGGACTTTTGACATCTAGGGTGCAGTATTCGTACTACATAGCCTAATTGTATAATACTCGTAGTTTCTTTTGAAGAGTGATATGTCATTATTTTGTTATGCAGGGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGAT</genome_strand>
        <mrna_strand>TGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCTCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E346970" ref_strand="+" ref_description="SGN-E346970 	[cTOF-25-I1]">
      <seq>aacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgaggtagcaaacattcaagttctagtcttttagttaacaaactgangtgctcgtattatgaacgattttgacctctttatatgacactaattgcctaaagtttggttcttgaattgtgctgcaagcgcgatgaattacaatacagattttgatatggacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60711" stop="58283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60411" g_stop="60335" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="198" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="283" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="362" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="476" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58583" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="749" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E346970" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60411" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAA</genome_strand>
        <mrna_strand>AACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGANGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E435348" ref_strand="+" ref_description="SGN-E435348 	[STM-61-K18]">
      <seq>ctttctcatcctacagcttccaaaatggctgcagcatcaacaagtccctctttattttctgcaactcgttctgcttctaatactaatgcaagtccctctgtttcaaatatatatgctacaagttttatgggcgcgcacatgagaagatgtcatccagctacaaggaaactagtaaggattagtaagggtatagttgctgcggccgttgcaacttcccctgcagaggaaatcaaagaatatgctcttccttcatgggctaaatttgaccttggaaaatcaccagtatattggaaaacaatgaatggtcttcccccaactgcaggagagagactgaagcttttttacaatccagctgcaaacaatatggttcctaatgaagattttggaatcgcttttaatggaggtttcaaccaacctatcatgtgcggtggtgaacctaggataatgctccagaaaatcagaggaaaagccgatcctcctatctatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcgttcacaaatggcaccgaatgggatggtccgtatagactacaatttcaagttcccaaggcttggagaaataaaccaactgaattcttcactgagggtcttgcacggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60749" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60449" g_stop="60335" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="236" r_length="121" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="321" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="400" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.774" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="514" r_length="114" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E435348" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60449" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</genome_strand>
        <mrna_strand>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTTCTGCAACTCGTTCTGCTTCTAATACTAATGCAAGTCCCTCTGTTTCAAATATATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACATGAGAAGATGTCATCCAGCTACAAGGAAACTAGTAAGGATTAGTAAGGGTATAGTTGCTGCGGCCGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGCTCTTCCTTCATGGGCTAAATTTGACCTTGGAAAATCACCAGTATATTGGAAAACAATGAATGGTCTTCCCCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAACAATATGGTTCCTAATGAAGATTTTGGAATCGCTTTTAATG..................................................................................................................................GAGGTTTCAACCAACCTATCATGTGCGGTGGTGAACCTAGGATAATGCTCCAGAAAATCAGAGGAAAAGCCGATCCTCCTATCTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCGTTCACAAATGGCACCGAATGGGATGGTCCGTATAGACTACAATTTCAAGTTCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E465798" ref_strand="+" ref_description="SGN-E465798 	[cPRO-22-E6]">
      <seq>ctttctcatcctacagcttccaaaatggctgcagcatcaacaagtccctctttattttctgcaactcgttctgcttctaatactaatgcaagtccctctgtttcaaatatatatgctacaagttttatgggcgcgcacatgagaagatgtcatccagctacaaggaaactagtaaggattagtaagggtatagttgctgcggccgttgcaacttcccctgcagaggaaatcaaagaatatgctcttccttcatgggctaaatttgaccttggaaaatcaccagtatattggaaaacaatgaatggtcttcccccaactgcaggagagagactgaagcttttttacaatccagctgcaaacaatatggttcctaatgaagattttggaatcgcttttaatggaggtttcaaccaacctatcatgtgcggtggtgaacctaggataatgctccagaaaatcagaggaaaagccgatcctcctatctatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcgttcacaaatggcaccgaatgggatggtccgtatagactacaatttcaagttcccaaggcttggagaaataaaccaactgaattcttcactgagggtcttgcacgggagttgagccaggatggcgcctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60749" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60449" g_stop="60335" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="236" r_length="121" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="321" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="400" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.774" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="514" r_length="114" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E465798" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60449" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</genome_strand>
        <mrna_strand>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTTCTGCAACTCGTTCTGCTTCTAATACTAATGCAAGTCCCTCTGTTTCAAATATATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACATGAGAAGATGTCATCCAGCTACAAGGAAACTAGTAAGGATTAGTAAGGGTATAGTTGCTGCGGCCGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGCTCTTCCTTCATGGGCTAAATTTGACCTTGGAAAATCACCAGTATATTGGAAAACAATGAATGGTCTTCCCCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAACAATATGGTTCCTAATGAAGATTTTGGAATCGCTTTTAATG..................................................................................................................................GAGGTTTCAACCAACCTATCATGTGCGGTGGTGAACCTAGGATAATGCTCCAGAAAATCAGAGGAAAAGCCGATCCTCCTATCTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCGTTCACAAATGGCACCGAATGGGATGGTCCGTATAGACTACAATTTCAAGTTCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E341795" ref_strand="+" ref_description="SGN-E341795 	[cTOF-9-G16]">
      <seq>aaatggctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgaagggtcttacacagggagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60727" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60427" g_stop="60335" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="214" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="299" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="378" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="492" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="605" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E341795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60427" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</genome_strand>
        <mrna_strand>AAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E290184" ref_strand="+" ref_description="SGN-E290184 	[cLET-5-M11]">
      <seq>agctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcactgagggtcttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60035" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59735" g_stop="59655" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="166" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="245" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="359" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="472" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E290184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59735" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</genome_strand>
        <mrna_strand>AGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E282428" ref_strand="+" ref_description="SGN-E282428 	[cLER-18-H20]">
      <seq>tagactgaagcttttttacaattcagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagatataaaccaactgaattcttcactgagggtcttacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="59572" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59273" g_stop="59200" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="188" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58855" g_stop="58743" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="301" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E282428" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59273" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG</genome_strand>
        <mrna_strand>TAGACTGAAGCTTTTTTACAATTCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGATATAAACCAACTGAATTCTTCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E253386" ref_strand="+" ref_description="SGN-E253386 	[cLEG-24-K9]">
      <seq>gctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60722" stop="58446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60422" g_stop="60335" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="209" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="294" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="373" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="487" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58746" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="597" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E253386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60422" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACT</genome_strand>
        <mrna_strand>GCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E249693" ref_strand="+" ref_description="SGN-E249693 	[cLEF-56-B14]">
      <seq>ttatgggcgctcacttgagaacatattatccagctacaaggaaactagtcaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggcttggagaaataaaccaactgaattcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60066" stop="58446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59766" g_stop="59655" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="197" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="276" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="390" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58855" g_stop="58746" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="500" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E249693" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59766" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACT</genome_strand>
        <mrna_strand>TTATGGGCGCTCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTCAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E294301" ref_strand="+" ref_description="SGN-E294301 	[cLET-14-F8]">
      <seq>agcatcaacatgtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60717" stop="58477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60417" g_stop="60335" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="204" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="368" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="482" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58777" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="561" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E294301" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60417" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGC</genome_strand>
        <mrna_strand>AGCATCAACATGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E294302" ref_strand="+" ref_description="SGN-E294302 	[cLET-14-F8]">
      <seq>agcatcaacatgtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttcaagtccccaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60717" stop="58477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60417" g_stop="60335" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="204" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="368" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="482" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58777" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="561" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E294302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60417" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGC</genome_strand>
        <mrna_strand>AGCATCAACATGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E285133" ref_strand="+" ref_description="SGN-E285133 	[cLER-20-C4]">
      <seq>aacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatggtccctatagactacaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60711" stop="58490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60411" g_stop="60335" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="198" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="283" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="362" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="476" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58790" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="542" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E285133" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60411" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTC</genome_strand>
        <mrna_strand>AACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E297969" ref_strand="+" ref_description="SGN-E297969 	[cLET-38-P3]">
      <seq>agcatcaacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctcttagtttgatcttctcattcacaaatggaatcgaatgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60717" stop="58511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60417" g_stop="60335" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="204" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="289" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="368" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="482" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58855" g_stop="58811" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="527" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E297969" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60417" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
          <exon e_start="58855" e_stop="58811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATGGTAAGTTTTAAGCTTTTAGTTAAGAAACTTCCCTTAGTTGCATTTTAGAAGAATAAATCGTTTAGCCTCCGATTTTTACCTTTTATCCATCTGTTTGCAGCTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATG</genome_strand>
        <mrna_strand>AGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG....................................................................................................CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E298328" ref_strand="+" ref_description="SGN-E298328 	[cLET-41-I12]">
      <seq>caagttttatgggcgcgcacttgaaaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatcagaggaaaagccgaccctcctatttatacgattcagttatgtattcccaagcatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60072" stop="58654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59772" g_stop="59655" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="203" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="282" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59069" g_stop="58956" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="396" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E298328" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59772" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="58956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG</genome_strand>
        <mrna_strand>CAAGTTTTATGGGCGCGCACTTGAAAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E289990" ref_strand="+" ref_description="SGN-E289990 	[cLET-9-N16]">
      <seq>ggctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgctcgagaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60723" stop="58711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60423" g_stop="60335" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="210" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="295" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="374" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="59011" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="433" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E289990" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60423" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="59011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATC</genome_strand>
        <mrna_strand>GGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E281973" ref_strand="+" ref_description="SGN-E281973 	[cLES-2-E22]">
      <seq>atcaacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagcttttttacaatccagctgcaagcaatatggtacctaatgaagattttggaatcgcgtttaatggaggttttaaccagcctatcatgtgtggaggtgagcctaggataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60714" stop="58722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60414" g_stop="60335" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="201" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="286" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="365" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59069" g_stop="59022" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="413" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E281973" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60414" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59200"/>
          <exon e_start="59069" e_stop="59022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATGGTAAGTTCATGTCTATTTCAAATTCACATAACTTATTCAACAGGTTTCGTTCTTCTTTTTGTTCCTATTTGCAATTGTCTTCATTCTAAAATTAGAACCAAAATGCTGAATTGTTGAGATTCGAATTCAGGAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGC</genome_strand>
        <mrna_strand>ATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG..................................................................................................................................GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E247203" ref_strand="+" ref_description="SGN-E247203 	[cLEF-46-M23]">
      <seq>tcgtgccgaattcggcacgagaaatggctgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctaatactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccataggggtatagttgctgcggcagttgcaacttcccctgcagaggaaatcaaagaatatgtgcttccttcatgggctaaatttgaccttggaatatcaccagtatattggaaaacaatgaatggtcttcctccaactgcaggagagagactgaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60730" stop="58959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60433" g_stop="60335" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="114" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="235" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59473" g_stop="59389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="320" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59278" g_stop="59259" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="340" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E247203" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60433" e_stop="60335"/>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="59473" e_stop="59389"/>
          <exon e_start="59278" e_stop="59259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGAGTAAGCTCATTCCTTCTCTTGTCTTCCGTCTTTTAATGAGACATACTGAGTTTTGTTAGCATCGACTCAATGAACTAACATATATATACTGATATAGTAACGACAGTAAGTGATTGCTCTATGTATATATACATGATATAGAACTATATAAGTTTGACATTCGCCAACGTTGGTGTTACAGATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCAGTATGTTCAAATATCCCCAAAAAAATGAATATATCTCTTTTATAACATAATGTTTCTGAATTCTTAGTAATAGAGGTCCTAAATGTTTGTTATTATCATTTTTTTGACAGGGAGAGAGACTGAAGCTTTT</genome_strand>
        <mrna_strand>CACGAGAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA.....................................................................................................................................................................................ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA..............................................................................................................GGAGAGAGACTGAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E285943" ref_strand="+" ref_description="SGN-E285943 	[cLES-13-K14]">
      <seq>tgcagcatcaacaagtccctctttatttcctgcaactcgttctgcttctactactaatacaagtccctctgtttcaaatatttatgctacaagttttatgggcgcgcacttgagaacatattatccagctacaaggaaactagtaaggatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60720" stop="59407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60420" g_stop="60335" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59775" g_stop="59707" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="155" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E285943" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60420" e_stop="60335"/>
          <exon e_start="59775" e_stop="59707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATGGTAAGATACACAATTTCTGTAACATCTTTTTTTTTTTCTCGATATGTGAGAAAAGGAGCATCGAAGCAACAGTAAAGTTGTCTCTGAGTGAATTATAGGCAAGGGGTTTAAGCCGTCAGAATAGTCACTAATACTTGTAATTAGGATAGACTGTCTACATCACATCTCCTAGGAGCGATTCTAGTCCTTCCCCAGACTCGGCTAACGCGAGATGTTTTGTGCACCTTGTTGCCTTGTCTATTTATTTTTTCCTCGATCTGCATATATTTACTTTAATATGTTGTTATTTGGATAATTTTGTATTGGAATGAAGAAGAATCGAAATATAGTAGAATGAATACAGAGGATTCATATAGTCAATCCCAACGAATAGGGATTGTGGCATAGTTTAATTTGCGTAACGATTTAATCTAACTCACAAATTACCCCATAGAAACTTAGTGAGTGCAAATTAATCGGGCTCCAAAGCTGATACGGAACAAATCAAAACGAAAAAAAACAGAACTCAGCCATTTCATTGGTTTCGTTTCTCTAATGTATCTGTATATTCAACATGTAGCTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATA</genome_strand>
        <mrna_strand>TGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTACTACTAATACAAGTCCCTCTGTTTCAAATATTTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E216859" ref_strand="+" ref_description="SGN-E216859 	[cLEL-1-N9]">
      <seq>tttttttttttttttttttcatgaatctaatgtcaaattacagaagagttgattcgagagtgagtacaataagtatatatttctttggtgctaaattattacacacttaatatataattttacaagtagtgtgcagaagatttggcaataatcttcaaaatagtagaatttaacccaaactgaatcaaattatgtgcaatctataccatgtcatcaggttgagcataaacctatacaaatatgcttagagaaaaatggtgaatgtaatagaaaataaacttagcagaaaactcgcgaacacgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="60973" stop="61867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61260" g_stop="61567" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E216859" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61260" e_stop="61567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTAACTCGTTTGTTCATGAATCTAATGTCAAATTACAGAAGAATTGATTCGAGAGTGAGTACAATAAGTATATATTTCTTTGGTGCTAAATTATTACACACTTAATATATAATTTTACAAGTAGTGTGCAGAAGATTTGGCAATAATCTTCAAAATAGTAGAATTTAACCCAAACTGAATCAAATTATGTGCAATCTATACCATGTCATCAGGTTGAGCATAAACCTATACAAATATGCTTAGAGAAAAATGGTGAATGTAATAGAAAATAAACTTAGCAGAAAACTCGCGAACACGATATTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTCATGAATCTAATGTCAAATTACAGAAGAGTTGATTCGAGAGTGAGTACAATAAGTATATATTTCTTTGGTGCTAAATTATTACACACTTAATATATAATTTTACAAGTAGTGTGCAGAAGATTTGGCAATAATCTTCAAAATAGTAGAATTTAACCCAAACTGAATCAAATTATGTGCAATCTATACCATGTCATCAGGTTGAGCATAAACCTATACAAATATGCTTAGAGAAAAATGGTGAATGTAATAGAAAATAAACTTAGCAGAAAACTCGCGAACACGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E549558" ref_strand="-" ref_description="SGN-E549558 	[TUS-71-I11]">
      <seq>ttttttttaaaaaaaaaaaagaaaaatagagaagttgggagaaaattgtttgtggtgctttaattatggcaattttgctacaaatcccaatagcacaaacagaacatatagttggggatagctttggttggtctataccaattaatggtgctgcagcttattcgatgtgggctgatgcaaattcaatcaaaattggtgatactttagtattcaaatttacgcaaggaaaccatgatgtacaagaagtatcaagaagttcatatgaagaatgcagtacacaaaattctataggtgaagcaatcaagaaagggcctgcaaaaataacagttcaaactcttggtgatcattattatatttgcactgttggtgagcactgtttagctggtcaaaaaatggccattaaagtttcaagttccaattcctcagcctcaaatactccagcaggcagcatcccacctccttcattttcctcaaatatggtgttcgcgagttttctgctaagtttattttctattacattcaccatttttttctaagcagatttgtataggtttatgctcaacctgatgacatggtatagagtgcacataatttgattcagtttgggttaaattctaccattttgaagatttttgccaaattttctgcacactacttgtaaaattatatattaagtgtgtaataatttagccccaaagaaaatatatacttattgtgctcactctcgaatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="63716" stop="61008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63415" g_stop="63210" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63209" i_stop="61833" i_length="1377">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61832" g_stop="61309" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="732" r_length="525" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="769"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E549558" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549558" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63415" e_stop="63210"/>
          <exon e_start="61832" e_stop="61309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTAAAAAAAAATAAAAAAGATAGAGAAGAT-GGAGAAAATTGTTTGTGGTGCTTTAATTATAGCAATTTTACTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATGCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGACACTTTAGGTATTCTTTCTGTTTTAATTAATTTGATTGTTTTTATATTTTATGGTTTAAATAAAAGATAATTATCAAAATATTGTTTAAATGGATGGTGGAAAGTTGGAATTGAAAAATTACTTTATAAAATAAAGGGAAGAATGCATTTCGAGATGAACAAAAAAATACGTCAAACATGCACATTTAATTTTAAAGTAAATAAGTTAACAAAATCATCCCTTCTTTTGATTTAAAAGATCACGTATCTTTTAGTTTTTTTTATTTTCGATTTCTCACCGGGCGTCTTGGTATACCTACATTGGAGTCCGGTTAAAATTGAAATCATGACGAAAAATTTTACATTGAAAATAAAATATTTCTTAACAAAGACGACATCGTATACAAGAGGACTCGAACCCAAAACCTCTTGATTAAGGATAAAGGACAGAAACAGTACTTACCACCAAAGTGTTAATTTTCTTTGTCATGTATTAGAATGGTGCTAATTTTTTGTTAATTCACTTAAAAGATCACTTATTTAAAAAAATGATACATTCGACCACTTTTTAATAATGTGACATCTAATTTTCAGAGCCACAAAAATAAAAATATTAAATTTAACCCATTTAGACAAAAAATCTCGTATCTGATTCATACTTAATCCGTAAAATCCATTTATGTATACTAAACAGTGGTCTAGAAATTCCTTATACGAAAAAAAAAATCTTAACATTAAAACTATGAACTCTCTAATATTTGCAAAACTAAGTTTGAGTTTAATTAATATTTGCAAAACTAAGTTTGAGTTTAATTACTCACATCTCATCATGGCTTTTATACTTCTATAGTACTTAACATGCTAATTTGTAATATTATTATAAAGTGTATTATAAATTTTGTGATAATTATAAATTACTTAATTCTTTTCATCTTTTTTTTTATGCGCGTTAATTAATAGAGATTTCTTACCTCAATAGAATTGACTTCCATCTCTGTTAAGTTTTTTTTTTAATTATATTATTAATAAAATGCCGCTACATATAGTCTAGTGGTATAAATTCAAAAAAAGAAGTCTTAGAATCACCATTTGTAATTATTTTGAACTTTAAGAAATATGCTTCACAAAAAAATAAAGAAGAATTAAAGTTATGTCAAATATACTAAAATGTTCTTTAATTTTATGGTGTTAAGTATATCACGTGGAAAATTAAAATTAAAATATTATCAAAAAATGGAAAGGAATCATTCTTTTTTAAACAGACTAAAGAGGAAATATAGTCATTCTTTTTTAAACGGAGAGAATATTATAATATACTACCATCGTCCGCTTTCAATTGTCAGTTTTGACAGTAGAATTGAATTATAAAACTTTTGGCTAACATTTTACGATGAATTCTTGACCAGTATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAG-AAATATATACTTATTGTACTCACTCTCGAATCA</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAAAAAAAGAAAAATAGAGAAGTTGGGAGAAAATTGTTTGTGGTGCTTTAATTATGGCAATTTTGCTACAAATCCCAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATTCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGATACTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTCAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTTCAAGTTCCAATTCCTCAGCCTCAAATACTCCAGCAGGCAGCATCCCACCTCCTTCATTTTCCTCAAATATGGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTTTCTAAGCAGATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGAGTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACCATTTTGAAGATTTTTGCCAAATTTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCCCCAAAGAAAATATATACTTATTGTGCTCACTCTCGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E238811" ref_strand="-" ref_description="SGN-E238811 	[cLEL-9-N2]">
      <seq>aaaataacagttaaaactcttggtgatcattattatatttgcactgttggtgagcactgtttagctggtcaaaaaatggccattaaagttacaagttcaaattcctcagcctcaaatactccagcaggaagcatcccaacctccttcatcttcctcaaatatcgtgttcgcgagttttctgctaagtttattttctattacattcaccatttttctctaagcatatttgtataggtttatgctcaacctgatgacatggtatagattgcacataatttgattcagtttgggttaaattctactattttgaagattattgccaaatcttctgcacactacttgtaaaattatatattaagtgtgtaataatttagcaccaaagaaatatatacttattgtactcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="62022" stop="61020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61722" g_stop="61320" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="420"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E238811" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238811" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61722" e_stop="61320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCC-ACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAATATATACTTATTGTACTCA</genome_strand>
        <mrna_strand>AAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCAACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAATATATACTTATTGTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E238898" ref_strand="-" ref_description="SGN-E238898 	[cLEL-9-N2]">
      <seq>ggtcaaaaaatggccattaaagttacaagttcaaattcctcagcctcaaatactccagcaggaagcatcccnacctccttcatcttcctcaaatatcgtgttcgcgagttttctgctaagtttattttctattacattcaccatttttctctaagcatatttgtataggtttatgctcaacctgatgacatggtatagattgcacataatttgattcagtttgggttaaattctactattttgaagattattgccaaatcttctgcacactacttgtaaaattatatattaagtgtgtaataatttagcaccaaagaaatatatacttattgtactcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="61956" stop="61020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61320" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="354"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E238898" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238898" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCC-ACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAATATATACTTATTGTACTCA</genome_strand>
        <mrna_strand>GGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCNACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAATATATACTTATTGTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E373639" ref_strand="-" ref_description="SGN-E373639 	[TUS-33-M10]">
      <seq>tggggatagctttggttggtctataccaattaatggtgctgcagcttattcgatgtgggctgatgcaaattcaatcaaaattggtgatactttagtattcaaatttacgcaaggaaaccatgatgtacaaaaagtatcaaaaagttcatatgaaaaatgcagtacccaaaattttataggtgaagcaatcaaaaaagggcctgcaaaaataacagttcaaacttttggtgatcattattatatttgcactgttggtgagcactgtttagctggtcaaaaaatggccattaaagtttcaagttccaattcctcagcctcaaatactccagcaggcagcatcccccctccttcattttcctcaaaaattgtgtttgcgagttttttggtaagtttattttttattacattcaccatttttttttaaacaaatttgtataggtttatgctcaacctgatgacatggtataaagggcacataatttgattcagtttgggttaaattttacccttttgaaaatttttgccaaattttttgccccctacttgtaaaattatatattaagtgtgtaataatttagccccaaaaaaatatatacttattgtgctcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="63604" stop="61019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63304" g_stop="63210" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63209" i_stop="61833" i_length="1377">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.674" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61832" g_stop="61338" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="590" r_length="495" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="642"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E373639" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63304" e_stop="63210"/>
          <exon e_start="61832" e_stop="61338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATGCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGACACTTTAGGTATTCTTTCTGTTTTAATTAATTTGATTGTTTTTATATTTTATGGTTTAAATAAAAGATAATTATCAAAATATTGTTTAAATGGATGGTGGAAAGTTGGAATTGAAAAATTACTTTATAAAATAAAGGGAAGAATGCATTTCGAGATGAACAAAAAAATACGTCAAACATGCACATTTAATTTTAAAGTAAATAAGTTAACAAAATCATCCCTTCTTTTGATTTAAAAGATCACGTATCTTTTAGTTTTTTTTATTTTCGATTTCTCACCGGGCGTCTTGGTATACCTACATTGGAGTCCGGTTAAAATTGAAATCATGACGAAAAATTTTACATTGAAAATAAAATATTTCTTAACAAAGACGACATCGTATACAAGAGGACTCGAACCCAAAACCTCTTGATTAAGGATAAAGGACAGAAACAGTACTTACCACCAAAGTGTTAATTTTCTTTGTCATGTATTAGAATGGTGCTAATTTTTTGTTAATTCACTTAAAAGATCACTTATTTAAAAAAATGATACATTCGACCACTTTTTAATAATGTGACATCTAATTTTCAGAGCCACAAAAATAAAAATATTAAATTTAACCCATTTAGACAAAAAATCTCGTATCTGATTCATACTTAATCCGTAAAATCCATTTATGTATACTAAACAGTGGTCTAGAAATTCCTTATACGAAAAAAAAAATCTTAACATTAAAACTATGAACTCTCTAATATTTGCAAAACTAAGTTTGAGTTTAATTAATATTTGCAAAACTAAGTTTGAGTTTAATTACTCACATCTCATCATGGCTTTTATACTTCTATAGTACTTAACATGCTAATTTGTAATATTATTATAAAGTGTATTATAAATTTTGTGATAATTATAAATTACTTAATTCTTTTCATCTTTTTTTTTATGCGCGTTAATTAATAGAGATTTCTTACCTCAATAGAATTGACTTCCATCTCTGTTAAGTTTTTTTTTTAATTATATTATTAATAAAATGCCGCTACATATAGTCTAGTGGTATAAATTCAAAAAAAGAAGTCTTAGAATCACCATTTGTAATTATTTTGAACTTTAAGAAATATGCTTCACAAAAAAATAAAGAAGAATTAAAGTTATGTCAAATATACTAAAATGTTCTTTAATTTTATGGTGTTAAGTATATCACGTGGAAAATTAAAATTAAAATATTATCAAAAAATGGAAAGGAATCATTCTTTTTTAAACAGACTAAAGAGGAAATATAGTCATTCTTTTTTAAACGGAGAGAATATTATAATATACTACCATCGTCCGCTTTCAATTGTCAGTTTTGACAGTAGAATTGAATTATAAAACTTTTGGCTAACATTTTACGATGAATTCTTGACCAGTATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAAT</genome_strand>
        <mrna_strand>TGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATTCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGATACTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAATTTACGCAAGGAAACCATGATGTACAAAAAGTATCAAAAAGTTCATATGAAAAATGCAGTACCCAAAATTTTATAGGTGAAGCAATCAAAAAAGGGCCTGCAAAAATAACAGTTCAAACTTTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTTCAAGTTCCAATTCCTCAGCCTCAAATACTCCAGCAGGCAGCATCCCCCCTCCTTCATTTTCCTCAAAAATTGTGTTTGCGAGTTTTTTGGTAAGTTTATTTTTTATTACATTCACCATTTTTTTTTAAACAAATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAAAGGGCACATAATTTGATTCAGTTTGGGTTAAATTTTACCCTTTTGAAAATTTTTGCCAAATTTTTTGCCCCCTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCCCCAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E547575" ref_strand="+" ref_description="SGN-E547575 	[TUS-71-I11]">
      <seq>gtaacctacaatcttttttttttttttttggttgcaaaaaactagagcattttctatcacaattatttttatttttttttaaaaaaaaaaaagaaaaatagagaagatggagaaaattgtttgtggtgctttaattatggcaattttgctacaaatcacaatagcacaaacagaacatatagttggggatagctttggttggtctataccaattaatggtgctgcagcttattcgatgtgggctgatgcaaattcaatcaaaattggtgatactttagtattcaaatttacgcaaggaaaccatgatgtacaagaagtatcaagaagttcatatgaagaatgcagtacacaaaattctataggtgaagcaatcaagaaagggcctgcaaaaataacagttcaaactcttggtgatcattattatatttgcactgttggtgagcactgtttagctggtcaaaaaatggccattaaagtttcaagttccaattcctcagcctcaaatactccagcaggcagcatcccacctccttcatcttcctcaaatatcgtgttcgcgagttttctgctaagtttattttctattacattcaccatttttttctaagcagatttgtataggtttatgctcaacctgatgacatggtatagagtgcacataatttgattcagtttgggttaaattctacatttttgagatttttgccaatcttctgcacactacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="63783" stop="61081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63483" g_stop="63210" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63209" i_stop="61833" i_length="1377">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61832" g_stop="61381" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="728" r_length="450" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E547575" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63483" e_stop="63210"/>
          <exon e_start="61832" e_stop="61381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCTACAATCTTTTCTTTCTTTTTTTTGGTTGCAAAAAACTAGAGCATTTTCTATCACAAATATTTTTA-----TTTTAAAAAAAAATAAAAAAGATAGAGAAGATGGAGAAAATTGTTTGTGGTGCTTTAATTATAGCAATTTTACTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATGCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGACACTTTAGGTATTCTTTCTGTTTTAATTAATTTGATTGTTTTTATATTTTATGGTTTAAATAAAAGATAATTATCAAAATATTGTTTAAATGGATGGTGGAAAGTTGGAATTGAAAAATTACTTTATAAAATAAAGGGAAGAATGCATTTCGAGATGAACAAAAAAATACGTCAAACATGCACATTTAATTTTAAAGTAAATAAGTTAACAAAATCATCCCTTCTTTTGATTTAAAAGATCACGTATCTTTTAGTTTTTTTTATTTTCGATTTCTCACCGGGCGTCTTGGTATACCTACATTGGAGTCCGGTTAAAATTGAAATCATGACGAAAAATTTTACATTGAAAATAAAATATTTCTTAACAAAGACGACATCGTATACAAGAGGACTCGAACCCAAAACCTCTTGATTAAGGATAAAGGACAGAAACAGTACTTACCACCAAAGTGTTAATTTTCTTTGTCATGTATTAGAATGGTGCTAATTTTTTGTTAATTCACTTAAAAGATCACTTATTTAAAAAAATGATACATTCGACCACTTTTTAATAATGTGACATCTAATTTTCAGAGCCACAAAAATAAAAATATTAAATTTAACCCATTTAGACAAAAAATCTCGTATCTGATTCATACTTAATCCGTAAAATCCATTTATGTATACTAAACAGTGGTCTAGAAATTCCTTATACGAAAAAAAAAATCTTAACATTAAAACTATGAACTCTCTAATATTTGCAAAACTAAGTTTGAGTTTAATTAATATTTGCAAAACTAAGTTTGAGTTTAATTACTCACATCTCATCATGGCTTTTATACTTCTATAGTACTTAACATGCTAATTTGTAATATTATTATAAAGTGTATTATAAATTTTGTGATAATTATAAATTACTTAATTCTTTTCATCTTTTTTTTTATGCGCGTTAATTAATAGAGATTTCTTACCTCAATAGAATTGACTTCCATCTCTGTTAAGTTTTTTTTTTAATTATATTATTAATAAAATGCCGCTACATATAGTCTAGTGGTATAAATTCAAAAAAAGAAGTCTTAGAATCACCATTTGTAATTATTTTGAACTTTAAGAAATATGCTTCACAAAAAAATAAAGAAGAATTAAAGTTATGTCAAATATACTAAAATGTTCTTTAATTTTATGGTGTTAAGTATATCACGTGGAAAATTAAAATTAAAATATTATCAAAAAATGGAAAGGAATCATTCTTTTTTAAACAGACTAAAGAGGAAATATAGTCATTCTTTTTTAAACGGAGAGAATATTATAATATACTACCATCGTCCGCTTTCAATTGTCAGTTTTGACAGTAGAATTGAATTATAAAACTTTTGGCTAACATTTTACGATGAATTCTTGACCAGTATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGT</genome_strand>
        <mrna_strand>GTAACCTACAATCTTTT-TTTTTTTTTTTTGGTTGCAAAAAACTAGAGCATTTTCTATCACAATTATTTTTATTTTTTTTTAAAAAAAAAAAAGAAAAATAGAGAAGATGGAGAAAATTGTTTGTGGTGCTTTAATTATGGCAATTTTGCTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATTCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGATACTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTCAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTTCAAGTTCCAATTCCTCAGCCTCAAATACTCCAGCAGGCAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTTTCTAAGCAGATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGAGTGCACATAATTTGATTCAGTTTGGGTTAAATTCTAC-ATTTTTGAGATTTTTGCC-AATCTTCTGCACACTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E238771" ref_strand="+" ref_description="SGN-E238771 	[cLEL-9-P18]">
      <seq>gtgtgcagaagatttggcatttttcttcaaaatagtagaatttaacccaattctgaatcaaattatgtgcaatctataccatgtctttatgttgagcataaacctatacaaatatgcttagagaaatatggtgaatgtaatagaaaataaacttagcataaaattcgcgaacacgatatttgaggaagatgaaggaggtgggatgcttcctgctggagtatttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="61088" stop="61913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61388" g_stop="61613" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E238771" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61388" e_stop="61613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCAGAAGATTTGGCAATAATCTTCAAAATAGTAGAATTTAACCCAA-ACTGAATCAAATTATGTGCAATCTATACCATGTCATCAGGTTGAGCATAAACCTATACAAATATGCTTAGAGAAAAATGGTGAATGTAATAGAAAATAAACTTAGCAGAAAACTCGCGAACACGATATTTGAGGAAGATGAAGGAGGTGGGATGCTTCCTGCTGGAGTATTTGAGG</genome_strand>
        <mrna_strand>GTGTGCAGAAGATTTGGCATTTTTCTTCAAAATAGTAGAATTTAACCCAATTCTGAATCAAATTATGTGCAATCTATACCATGTCTTTATGTTGAGCATAAACCTATACAAATATGCTTAGAGAAATATGGTGAATGTAATAGAAAATAAACTTAGCATAAAATTCGCGAACACGATATTTGAGGAAGATGAAGGAGGTGGGATGCTTCCTGCTGGAGTATTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E373640" ref_strand="+" ref_description="SGN-E373640 	[TUS-33-M10]">
      <seq>tctctagtaacctacaatctttttttttttttttggttgcaaaaaactagagcattttctatcacaattatttttatttttttttaaaaaaaaaaagaaaaatagagaagatggagaaaattgtttgtggtgctttaattatggcaattttgctacaaatcacaatagcacaaacagaacatatagttggggatagctttggttggtctataccaattaatggtgctgcagcttattcgatgtgggctgatgcaaattcaatcaaaattggtgatactttagtattcaaatttacgcaaggaaaccatgatgtacaagaagtatcaagaagttcatatgaagaatgcagtacacaaaattctataggtgaagcaatcaagaaagggcctgcaaaaataacagttcaaactcttggtgatcattattatatttgcactgttggtgagcactgtttagctggtcaaaaaatggccattaaagtttcaagttccaattcctcagcctcaaatactccagcaggcagcatcccacctccttcatcttcctcaaatatcgtgttcgcgagttttctgctaagtttattttctattacattcaccatttttttctaagcagatttgtataggtttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="63789" stop="61182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63489" g_stop="63210" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63209" i_stop="61833" i_length="1377">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61832" g_stop="61482" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="633" r_length="351" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E373640" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63489" e_stop="63210"/>
          <exon e_start="61832" e_stop="61482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAGTAACCTACAATCTTTTCTTTCTTTTTTTTGGTTGCAAAAAACTAGAGCATTTTCTATCACAAATATTTTTA----TTTTAAAAAAAAATAAAAAAGATAGAGAAGATGGAGAAAATTGTTTGTGGTGCTTTAATTATAGCAATTTTACTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATGCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGACACTTTAGGTATTCTTTCTGTTTTAATTAATTTGATTGTTTTTATATTTTATGGTTTAAATAAAAGATAATTATCAAAATATTGTTTAAATGGATGGTGGAAAGTTGGAATTGAAAAATTACTTTATAAAATAAAGGGAAGAATGCATTTCGAGATGAACAAAAAAATACGTCAAACATGCACATTTAATTTTAAAGTAAATAAGTTAACAAAATCATCCCTTCTTTTGATTTAAAAGATCACGTATCTTTTAGTTTTTTTTATTTTCGATTTCTCACCGGGCGTCTTGGTATACCTACATTGGAGTCCGGTTAAAATTGAAATCATGACGAAAAATTTTACATTGAAAATAAAATATTTCTTAACAAAGACGACATCGTATACAAGAGGACTCGAACCCAAAACCTCTTGATTAAGGATAAAGGACAGAAACAGTACTTACCACCAAAGTGTTAATTTTCTTTGTCATGTATTAGAATGGTGCTAATTTTTTGTTAATTCACTTAAAAGATCACTTATTTAAAAAAATGATACATTCGACCACTTTTTAATAATGTGACATCTAATTTTCAGAGCCACAAAAATAAAAATATTAAATTTAACCCATTTAGACAAAAAATCTCGTATCTGATTCATACTTAATCCGTAAAATCCATTTATGTATACTAAACAGTGGTCTAGAAATTCCTTATACGAAAAAAAAAATCTTAACATTAAAACTATGAACTCTCTAATATTTGCAAAACTAAGTTTGAGTTTAATTAATATTTGCAAAACTAAGTTTGAGTTTAATTACTCACATCTCATCATGGCTTTTATACTTCTATAGTACTTAACATGCTAATTTGTAATATTATTATAAAGTGTATTATAAATTTTGTGATAATTATAAATTACTTAATTCTTTTCATCTTTTTTTTTATGCGCGTTAATTAATAGAGATTTCTTACCTCAATAGAATTGACTTCCATCTCTGTTAAGTTTTTTTTTTAATTATATTATTAATAAAATGCCGCTACATATAGTCTAGTGGTATAAATTCAAAAAAAGAAGTCTTAGAATCACCATTTGTAATTATTTTGAACTTTAAGAAATATGCTTCACAAAAAAATAAAGAAGAATTAAAGTTATGTCAAATATACTAAAATGTTCTTTAATTTTATGGTGTTAAGTATATCACGTGGAAAATTAAAATTAAAATATTATCAAAAAATGGAAAGGAATCATTCTTTTTTAAACAGACTAAAGAGGAAATATAGTCATTCTTTTTTAAACGGAGAGAATATTATAATATACTACCATCGTCCGCTTTCAATTGTCAGTTTTGACAGTAGAATTGAATTATAAAACTTTTGGCTAACATTTTACGATGAATTCTTGACCAGTATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGC</genome_strand>
        <mrna_strand>TCTCTAGTAACCTACAATCTTTT-TTT-TTTTTTTTGGTTGCAAAAAACTAGAGCATTTTCTATCACAATTATTTTTATTTTTTTTTAAAAAAAAAAAGAAAAATAGAGAAGATGGAGAAAATTGTTTGTGGTGCTTTAATTATGGCAATTTTGCTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATTCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGATACTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTCAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTTCAAGTTCCAATTCCTCAGCCTCAAATACTCCAGCAGGCAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTTTCTAAGCAGATTTGTATAGGTTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="98251" stop="97321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97951" g_stop="97621" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97951" e_stop="97621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAGCGTTATAGTTTTAGCATTACAATCTAAGATTTCGAAATTTGGAAAAAGCCAAGTCATACCCAAAATTACATCTAAGTCCACCATTTCCAAGATAACTAAGTCTACATGAGTACTACTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATGTCAAGCAATTCACATTGTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAAAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 	[cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="97351" stop="98611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97651" g_stop="98311" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97651" e_stop="98311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAAATTACAATGTGAATTGCTTGACATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGTAGTACTCATGTAGACTTAGTTATCTTGGAAATGGTGGACTTAGATGTAATTTTGGGTATGACTTGGCTTTTTCCAAATTTCGAAATCTTAGATTGTAATGCTAAAACTATAACGCTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTATCATCTCCTTACTTCGCGCCAAGAGAATGGTTAGAAAAGGTTGTTTAGCTTTCTTGGCACACCTTAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGACCTTTCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGTCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGT-TCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 	[cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="100052" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99752" g_stop="99166" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99752" e_stop="99166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATTAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAACACACCTTCTTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAATAAACTGCTTTTCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACGCAGGCCAACAATCCTACCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAACCAGAGTCTGAACCTCTCTAGTCAATGGGCGTCTACAAACCTGTAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTTATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 	[cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="100052" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99752" g_stop="99166" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99752" e_stop="99166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATTAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAACACACCTTCTTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAATAAACTGCTTTTCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACGCAGGCCAACAATCCTACCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAACCAGAGTCTGAACCTCTCTAGTCAATGGGCGTCTACAAACCTGTAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTTATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 	[cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="100052" stop="98899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99752" g_stop="99199" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99752" e_stop="99199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATTAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAACACACCTTCTTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAATAAACTGCTTTTCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACGCAGGCCAACAATCCTACCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAACCAGAGTCTGAACCTCTCTAGTCAATGGGCGTCTACAAACCTGTAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 	[cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="100497" stop="99356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100197" g_stop="99656" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100197" e_stop="99656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGTCTTAGTTAGTCTGTCAACAATCACCCAAATAGAGTCATACTTACCCGTCGTCTTTGGAAGACCAACCATGAAGTCCATTGCAATTCTCTACCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACACTTCATCCTGCTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATTAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAACACACCTTCTTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E273357" ref_strand="+" ref_description="SGN-E273357 	[cLEN-3-L15]">
      <seq>aatttttgttattcttcaaattttctaaagtttttaaaagcattttctttataagatatggatccatcaaatttatacgtacatcctggtccagtagagcatgatgtattaaaaattcaagttcatcatcgttccgaaggaatttggaatggtagcataaaagaagagaaatgttgcttatatacgcgtcgtggtgatattgaattttggcaacatttaaaatatcatccattacattctcgcatccttcaatattttgaaaattgtagatttaaaggaattcttgatgttggatgtgtgccgtatgactccggattaatttctgctttaattgaaaggtggcgtccggaaactcatacttttcacatgcgaactgacgaggctaccataactttacaagatattgaaattttattcggaatggtagtagatggtagtcctataattttaaatggagctgattctttaaggattataggtagacaagaaatgatttttcaattaacaggatggttacccgatactagttgtttttctggtgttagtagattgtcaacatataaattgattgagtatatcgaaggtttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="104487" stop="105852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104787" g_stop="104841" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104842" i_stop="104960" i_length="119">
            <donor d_prob="0.896" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104961" g_stop="105552" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="652" r_length="597" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E273357" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104787" e_stop="104841"/>
          <exon e_start="104961" e_stop="105552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTTTCTATTTTTCCAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAGGTGAGTTTGAATTTATTTTATTTTTAATTTATTTTATACTTTTATATGATATTGTTGATATATTCAATCTTTTGATACTTATATTAATGTAAATATTTCTTTTTATTTTTTGTGTATAGATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCTGAAGGAATTTGGAATGGTAGCATAAAAGAAAAGAGGTCTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATATTAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTAGATATAAAGGAATTATTGATGTAGGA---GT--CGTATGACTCTGGATTAATTTCTGCTTTAATGGAAAAATGGCGTCTAGAAAATCATACTTTTCACATGCGAACTGGCGAGACTACCATAACTTTACAAGATATTAAAATTTTATTTAGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGATGATTCTTTAGGGATTATCAGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTGGATGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTAT</genome_strand>
        <mrna_strand>AATTTTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAG.......................................................................................................................ATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAAATGTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGACGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E276288" ref_strand="+" ref_description="SGN-E276288 	[cLEN-21-K4]">
      <seq>ttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttgtttctgccaatgttgtttttataattatcttacttaattattttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105186" stop="106613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105486" g_stop="106092" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106093" i_stop="106265" i_length="173">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106266" g_stop="106313" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="655" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E276288" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105486" e_stop="106092"/>
          <exon e_start="106266" e_stop="106313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCAAGAAAATTATGTGAATAAAATGACATATACATAGATTCTTGTTAGGTCCTTAAAAGTAAAATATCTTATGACACAATGGTTCAAAAAAATTATTTTGTAAGATTGTTCATTTTCACGTACATATTTTTTTTTATTTTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTA</genome_strand>
        <mrna_strand>TTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTG.............................................................................................................................................................................TTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E276340" ref_strand="+" ref_description="SGN-E276340 	[cLEN-21-J12]">
      <seq>agttattaactataactcaactgagtttgaagttcaacaaagatttagattatatggattatggttatgcggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105192" stop="106391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="106094" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E276340" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="106094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGT</genome_strand>
        <mrna_strand>AGTTATTAACTATAACTCAACTGAGTTTGAAGTTCAACAAAGATTTAGATTATATGGATTATGGTTATGCGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E276550" ref_strand="+" ref_description="SGN-E276550 	[cLEN-17-K14]">
      <seq>ttaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtagatttgggcatgggaaagaattattcccctgcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105196" stop="106182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105496" g_stop="105749" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105750" i_stop="105846" i_length="97">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105847" g_stop="105882" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="290" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E276550" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105496" e_stop="105749"/>
          <exon e_start="105847" e_stop="105882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</genome_strand>
        <mrna_strand>TTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAG.................................................................................................ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E286662" ref_strand="+" ref_description="SGN-E286662 	[cLES-12-P17]">
      <seq>tgattgacatgagaaatttaaatgtaatgtcaacacaagcatggggagcagacgcattacatatttgtataattgcttatgtcgtgcatcaatgaaaaatcaaatgaagtttgtggatttctctctttagtgcaagtatacatattttttaattaaatattttttatatactagtaatatgcacttttaaatttaagtgtattctatgtaatggagaattttgtttatgtagatttgggcatgggaacgaattattcccctgcaaccattgacaaagcctctaaggaccaatcaacttgaaacttcaactgcgcttgcacgtaaatggacgcgacgtataaatcatcacaatgaggcacgaactgtaatcggagtgactatatatgtactagataatctaactgatgaatacgtatttattattattagtattttaaactattcatatttttattccatgttaaataaaaatatgtttggtaggtctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105313" stop="106405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105613" g_stop="106104" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="508"/>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E286662" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105613" e_stop="106104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATA-TTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAA</genome_strand>
        <mrna_strand>TGATTGACATGAGAAATTTAAATGTAATGTCAACACAAGCATGGGGAGCAGACGCATTA-CATATTTGTATAATTGCTTATGTCGTGCATCAATG-AAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAAGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGTATTCTATGTAATGGAGAATTTTGTTTATGTAGATTTGGGCATGGGAACGAATTATTCCCCTGCAACCATTGACAAAGCCTCTAAGGACCAATCAACTTGAAACTTCAACTGCGCTTGCACGTAAATGGACGCGACGTATAAATCATCACAATGAGGCACGAACTGTAATCGGAGTGACTATATATGTACTAGATAATCTAACTGATGAATACGTATTTATTATTATTAGTATTTTAAACTATTCATATTTTTATTCCATGTTAAATAAAAATATGTTTGGTAGGTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E276969" ref_strand="+" ref_description="SGN-E276969 	[cLEN-22-H23]">
      <seq>cgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105396" stop="106839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105696" g_stop="105749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105750" i_stop="105846" i_length="97">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105847" g_stop="106090" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="298" r_length="244" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106091" i_stop="106263" i_length="173">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106264" g_stop="106539" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="574" r_length="276" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E276969" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105696" e_stop="105749"/>
          <exon e_start="105847" e_stop="106090"/>
          <exon e_start="106264" e_stop="106539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCAAGAAAATTATGTGAATAAAATGACATATACATAGATTCTTGTTAGGTCCTTAAAAGTAAAATATCTTATGACACAATGGTTCAAAAAAATTATTTTGTAAGATTGTTCATTTTCACGTACATATTTTTTTTTATTTTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAACCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCGAGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGGGTGGCACATGGTTGTTCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCATGTACCCAATTTTTTGAATATCATTTTAAGCGTGATAAACGATCCAAAA</genome_strand>
        <mrna_strand>CGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAG.................................................................................................ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATATATT.............................................................................................................................................................................TTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E393845" ref_strand="-" ref_description="SGN-E393845 	[TUS-41-D13]">
      <seq>caatccattaataacatcttcaaaaaaaagctgccgaataaactataaaaaaataattaagtaagataattataaaaacaacattggcagaaaaaaatatattcttatttaaaataaaataaaatatgaaaagtataagatactaataatatcaaatacttgttcatcagttagattatcaagtacatccctaatcacaccgattacagttcgtgcctcattttgatgatttctacgtcgcgtccatttacgtgcaagtgcagttaaagcctcaaattgattggttcttagaggctttggcaatggttgcaggggaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="106658" stop="105564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106358" g_stop="106265" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106264" i_stop="106092" i_length="173">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106091" g_stop="105864" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="322" r_length="228" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E393845" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393845" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106358" e_stop="106265"/>
          <exon e_start="106091" e_stop="105864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCATTAATAACATCTTCCGAATAAGGTTGCCAAATAAACTATAAAAAAATAATTAAGTAAGATAATTATTAAAACAACATTGACAGAAAAATAAAAAAAAATATGTACGTGAAAATGAACAATCTTACAAAATAATTTTTTTGAACCATTGTGTCATAAGATATTTTACTTTTAAGGACCTAACAAGAATCTATGTATATGTCATTTTATTCACATAATTTTCTTGGGTAGTGAAACATAAGTGCCTCATTTAAAGATCTACCAAACATATTTGTATTTAAAATGAAATAAAATATGAATAGTTTAAGATACTAATAATATTAAATACCTGTTCATCAGTTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGCGCAGTTGAAGCCTCAAGTTGATTGGTCCTTAGAGGCTTTGACAATGGTTGCAGGGGAATAATT</genome_strand>
        <mrna_strand>CAATCCATTAATAACATCTTCAAAAAAAAGCTGCCGAATAAACTATAAAAAAATAATTAAGTAAGATAATTATAAAAACAACATTGGCAGAAAA.............................................................................................................................................................................AAATATATTCTTATTTAAAATAAAATAAAATATGAAAAGTATAAGATACTAATAATATCAAATACTTGTTCATCAGTTAGATTATCAAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGTGCAGTTAAAGCCTCAAATTGATTGGTTCTTAGAGGCTTTGGCAATGGTTGCAGGGGAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E276989" ref_strand="-" ref_description="SGN-E276989 	[cLEN-22-B14]">
      <seq>tgcgggtatgcctcatgtaccaacggaagtaatctgtttgatcacttacaaatggaggtcgaaatatacgattttgacgttgttcccataaatattgtgtatagttaaatgcatctatatcttcttgttttatttttgatcgtttattacgcttaaaatgatattcggaaaattgggtacacggtccaggaatatgttgtaaataatcgaactgtctcacaacacgatcaaccatgtgccactcacgataaattccataaatcagtggcacctgtgccatccagacacgttgtcctgaccgacaccactcaggcaatccattaataacatcttccgaataaggctgccgaataaactataaaaaaataattaagtaagataattataaaaacaacattggcagaaaaaaatatattcttatttaaaataaaataaaatatgaaaagtataagatactaataatatcaaatacttgttcatcagttagattatcaagtacatccctaatcacaccgattacagttcgtgcctcattttgatgatttctacgtcgcgtccatttacgtgcaagtgcagttaaagcctcaaattgattggttcttagaggctttggcaatggttgcaggggaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="106971" stop="105565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106671" g_stop="106265" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106264" i_stop="106092" i_length="173">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106091" g_stop="105865" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="634" r_length="227" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E276989" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276989" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106671" e_stop="106265"/>
          <exon e_start="106091" e_stop="105865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATATGCCTCATGTACCAACGAAAGTAATCTGTTTGATCACTTACAAATGGAGGTCGAAATATACGATTTTGACGTTGTTCCCATAAATATTGTGTGTAGTTAAATTCATCTATATCTTCTTGTTTTATTTTGGATCGTTTATCACGCTTAAAATGATATTCAAAAAATTGGGTACATGGTCCAGGAATATGTTGTAAATAACCGAACTGTCTCACAACACGAACAACCATGTGCCACCCACGATAAATTCCATAAATCAGTGGCACCTGTGCCATCCAGACACGTTGTCTCGACCGACACCACTCAGGCAATCCATTAATAACATCTTCCGAATAAGGTTGCCAAATAAACTATAAAAAAATAATTAAGTAAGATAATTATTAAAACAACATTGACAGAAAAATAAAAAAAAATATGTACGTGAAAATGAACAATCTTACAAAATAATTTTTTTGAACCATTGTGTCATAAGATATTTTACTTTTAAGGACCTAACAAGAATCTATGTATATGTCATTTTATTCACATAATTTTCTTGGGTAGTGAAACATAAGTGCCTCATTTAAAGATCTACCAAACATATTTGTATTTAAAATGAAATAAAATATGAATAGTTTAAGATACTAATAATATTAAATACCTGTTCATCAGTTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGCGCAGTTGAAGCCTCAAGTTGATTGGTCCTTAGAGGCTTTGACAATGGTTGCAGGGGAATAAT</genome_strand>
        <mrna_strand>TGCGGGTATGCCTCATGTACCAACGGAAGTAATCTGTTTGATCACTTACAAATGGAGGTCGAAATATACGATTTTGACGTTGTTCCCATAAATATTGTGTATAGTTAAATGCATCTATATCTTCTTGTTTTATTTTTGATCGTTTATTACGCTTAAAATGATATTCGGAAAATTGGGTACACGGTCCAGGAATATGTTGTAAATAATCGAACTGTCTCACAACACGATCAACCATGTGCCACTCACGATAAATTCCATAAATCAGTGGCACCTGTGCCATCCAGACACGTTGTCCTGACCGACACCACTCAGGCAATCCATTAATAACATCTTCCGAATAAGGCTGCCGAATAAACTATAAAAAAATAATTAAGTAAGATAATTATAAAAACAACATTGGCAGAAAA.............................................................................................................................................................................AAATATATTCTTATTTAAAATAAAATAAAATATGAAAAGTATAAGATACTAATAATATCAAATACTTGTTCATCAGTTAGATTATCAAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGTGCAGTTAAAGCCTCAAATTGATTGGTTCTTAGAGGCTTTGGCAATGGTTGCAGGGGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E275375" ref_strand="-" ref_description="SGN-E275375 	[cLEN-10-E10]">
      <seq>acatgttgtggatttccaatgaccatgcgggtatgcctcatgtaccaacggaagtaatctgtttgatcacttacaaatggaggtcgaaatatacgattttgacgttgttcccataaatattgtgtatagttaaatgcatctatatcttcttgttttatttttgatcgtttattacgcttaaaatgatattcggaaaattgggtacacggtccaggaatatgttgtaaataatcgaactgtctcacaacacgatcaaccatgtgccactcacgataaattccataaatcagtggcacctgtgccatccagacacgttgtcctgaccgacaccactcaggcaatccattaataacatcttccgaataaggctgccgaataaactataaaaaaataattaagtaagataattataaaaacaacattggcagaaaaaaatatattcttatttaaaataaaataaaatatgaaaagtataagatactaataatatcaaatacttgttcatcagttagattatcaagtacatccctaatcacaccgattacagttcgtgcctcattttgatgatttctacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="106996" stop="105647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106696" g_stop="106265" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106264" i_stop="106092" i_length="173">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106091" g_stop="105947" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="577" r_length="145" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E275375" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106696" e_stop="106265"/>
          <exon e_start="106091" e_stop="105947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTGTGAATTTACAATGACCATGAGGATATGCCTCATGTACCAACGAAAGTAATCTGTTTGATCACTTACAAATGGAGGTCGAAATATACGATTTTGACGTTGTTCCCATAAATATTGTGTGTAGTTAAATTCATCTATATCTTCTTGTTTTATTTTGGATCGTTTATCACGCTTAAAATGATATTCAAAAAATTGGGTACATGGTCCAGGAATATGTTGTAAATAACCGAACTGTCTCACAACACGAACAACCATGTGCCACCCACGATAAATTCCATAAATCAGTGGCACCTGTGCCATCCAGACACGTTGTCTCGACCGACACCACTCAGGCAATCCATTAATAACATCTTCCGAATAAGGTTGCCAAATAAACTATAAAAAAATAATTAAGTAAGATAATTATTAAAACAACATTGACAGAAAAATAAAAAAAAATATGTACGTGAAAATGAACAATCTTACAAAATAATTTTTTTGAACCATTGTGTCATAAGATATTTTACTTTTAAGGACCTAACAAGAATCTATGTATATGTCATTTTATTCACATAATTTTCTTGGGTAGTGAAACATAAGTGCCTCATTTAAAGATCTACCAAACATATTTGTATTTAAAATGAAATAAAATATGAATAGTTTAAGATACTAATAATATTAAATACCTGTTCATCAGTTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTC</genome_strand>
        <mrna_strand>ACATGTTGTGGATTTCCAATGACCATGCGGGTATGCCTCATGTACCAACGGAAGTAATCTGTTTGATCACTTACAAATGGAGGTCGAAATATACGATTTTGACGTTGTTCCCATAAATATTGTGTATAGTTAAATGCATCTATATCTTCTTGTTTTATTTTTGATCGTTTATTACGCTTAAAATGATATTCGGAAAATTGGGTACACGGTCCAGGAATATGTTGTAAATAATCGAACTGTCTCACAACACGATCAACCATGTGCCACTCACGATAAATTCCATAAATCAGTGGCACCTGTGCCATCCAGACACGTTGTCCTGACCGACACCACTCAGGCAATCCATTAATAACATCTTCCGAATAAGGCTGCCGAATAAACTATAAAAAAATAATTAAGTAAGATAATTATAAAAACAACATTGGCAGAAAA.............................................................................................................................................................................AAATATATTCTTATTTAAAATAAAATAAAATATGAAAAGTATAAGATACTAATAATATCAAATACTTGTTCATCAGTTAGATTATCAAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E274114" ref_strand="+" ref_description="SGN-E274114 	[cLEN-8-I9]">
      <seq>tttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttttctgccaatgttgtttttataattatcttacttaattatttttttatagtttattcggcagccttattcggaagatgttattaatggattgcctgagtggtgtcggtcaggacaacgtgtctggatggcacaggtgccactgatttatggaatttatcgtgagtggcacatggttgatcgtgttgtgagacagttcgattatttacaacatattcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaagatatagatgcatttaactatacacaatatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgttgtacaaaaagggtatcaacacatggcaggaagacatgaggcattagctaggggtcatgaaatgcagtatcgtcgagctcggatgattgaaaatgatgaaaatcaatctaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="105730" stop="107193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106030" g_stop="106087" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106088" i_stop="106260" i_length="173">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106261" g_stop="106742" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="540" r_length="482" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106743" i_stop="106824" i_length="82">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106825" g_stop="106893" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="610" r_length="70" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E274114" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106030" e_stop="106087"/>
          <exon e_start="106261" e_stop="106742"/>
          <exon e_start="106825" e_stop="106893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCAAGAAAATTATGTGAATAAAATGACATATACATAGATTCTTGTTAGGTCCTTAAAAGTAAAATATCTTATGACACAATGGTTCAAAAAAATTATTTTGTAAGATTGTTCATTTTCACGTACATATTTTTTTTTATTTTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAACCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCGAGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGGGTGGCACATGGTTGTTCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCATGTACCCAATTTTTTGAATATCATTTTAAGCGTGATAAACGATCCAAAATAAAACAAGAAGATATAGATGAATTTAACTACACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTTCGTTGGTACATGAGGCATATCCTCATGGTCATTGTAAATTCACAACATGTTGTAAAAAAAGGGTATCAACACAGGGCAGGAAGACATGAGACATTAGTATGTATATTATGTAAATTTTAAATTATTATGTCAATCTTTAATAATTTTTTGTTATTAATATTTGTTTATTCATTATAAG-CTAGGGGTCATGAAATTCAGTATCATCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAA</genome_strand>
        <mrna_strand>TTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAAGAATAT.............................................................................................................................................................................ATTTTTTTCTGCCAATGTTGTTTTTATAATTATCTTACTTAATTATTTTTTTATAGTTTATTCGGCAGCCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCAGGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGAGTGGCACATGGTTGATCGTGTTGTGAGACAGTTCGATTATTTACAACATATTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAAGATATAGATGCATTTAACTATACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA..................................................................................GCTAGGGGTCATGAAATGCAGTATCGTCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E273853" ref_strand="+" ref_description="SGN-E273853 	[cLEN-7-O9]">
      <seq>ttgatcgtgttgtgagacagttcgattatttacaacggagtcctggaccgtgtacccaattttccgaatatcattttaagcgtaataaacgatcaaaaataaaacaagaggatatagatgcatttaactgtgcacaagatttatgggaacaacgtcaaaatcgtatatttcgacctccatttgtaagtgatcaaacagattacttccgttggtacatgaggcatacccgcatggtcattggaaatccacaacatgttgtacaaaaagggtatcaacacatggcaggaagacatgaggcattagctaggggtcatgaaatgcagtatcgtggagctcggatgattgaaaatgatgaaaatcaatctgatggaatgagacaatatgcagcggaagtcgctcgtatttcaatggagggaatgaaggcaggctcttaaggaacgcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="106141" stop="107251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106441" g_stop="106742" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106743" i_stop="106824" i_length="82">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106825" g_stop="106967" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="446" r_length="144" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E273853" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106441" e_stop="106742"/>
          <exon e_start="106825" e_stop="106967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCATGTACCCAATTTTTTGAATATCATTTTAAGCGTGATAAACGATCCAAAATAAAACAAGAAGATATAGATGAATTTAACTACACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTTCGTTGGTACATGAGGCATATCCTCATGGTCATTGTAAATTCACAACATGTTGTAAAAAAAGGGTATCAACACAGGGCAGGAAGACATGAGACATTAGTATGTATATTATGTAAATTTTAAATTATTATGTCAATCTTTAATAATTTTTTGTTATTAATATTTGTTTATTCATTATAAG-CTAGGGGTCATGAAATTCAGTATCATCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGAGGAAGTTGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTCCAGGGAACGCGATTG</genome_strand>
        <mrna_strand>TTGATCGTGTTGTGAGACAGTTCGATTATTTACAACGGAGTCCTGGACCGTGTACCCAATTTTCCGAATATCATTTTAAGCGTAATAAACGATCAAAAATAAAACAAGAGGATATAGATGCATTTAACTGTGCACAAGATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTCCGTTGGTACATGAGGCATACCCGCATGGTCATTGGAAATCCACAACATGTTGTACAAAAAGGGTATCAACACATGGCAGGAAGACATGAGGCATTA..................................................................................GCTAGGGGTCATGAAATGCAGTATCGTGGAGCTCGGATGATTGAAAATGATGAAAATCAATCTGATGGAATGAGACAATATGCAGCGGAAGTCGCTCGTATTTCAATGGAGGGAATGAAGGCAGGCTCTTAAGGAACGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 	[cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="113165" stop="114163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113465" g_stop="113865" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113465" e_stop="113865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCGTGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTAA---AGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACATG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 	[cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="114618" stop="68719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114318" g_stop="113981" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114318" e_stop="113981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTAATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 	[TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="113691" stop="114529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113991" g_stop="114229" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113991" e_stop="114229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 	[cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="113692" stop="114771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113992" g_stop="114471" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113992" e_stop="114471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTGCTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 	[cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="+" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="114844" stop="115997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115144" g_stop="115697" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115144" e_stop="115697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCTACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTATCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCTAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACCACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACCGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGCGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 	[cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="116166" stop="114848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115867" g_stop="115148" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115867" e_stop="115148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTAGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 	[cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="116164" stop="114901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115864" g_stop="115201" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115864" e_stop="115201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 	[cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="117467" stop="115471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117160" g_stop="116674" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="523" r_length="487" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116673" i_stop="115942" i_length="732">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115941" g_stop="115771" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="694" r_length="171" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117160" e_stop="116674"/>
          <exon e_start="115941" e_stop="115771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCTCATCACCCCGTCCGTTTTGGTGACCACCATTACCTCGACCATCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAAAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTACTCTAGAGTAAGAACCATTAAACTCACCTTCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>CAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 	[cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="117486" stop="116125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117186" g_stop="116425" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117186" e_stop="116425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 	[cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="117083" stop="116157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116783" g_stop="116453" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116783" e_stop="116453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 	[cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="117486" stop="116226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117186" g_stop="116526" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117186" e_stop="116526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lwNyX7/sgn_ests_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 	[cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-W2S44/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0009J11.1" temp_strand="-" temp_description="C12HBa0009J11.1  AC209660.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0009J11 sequenced_by:enea">
        <position start="117555" stop="116297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117255" g_stop="116597" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0009J11.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0009J11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117255" e_stop="116597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>125</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4863" PGL_stop="5539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4863" e_stop="5539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="4863" e_stop="5539" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4863" stop="5533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4932" stop="5539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATGAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATGTTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</gDNA_template>
            <first_frame> R  S  K  C  V  Y  *  T  R  *  A  S  R  E  I  H  Q  A  I  S  C  *  V  E  K  F  S  R  M  L  *  R  *  N  L  A  K  K  S  L  C  L  D  V  P  T  S  W  N  S  T  Y  M  M  L  S  R  V  I  E  Y  E  G  A  I  V  E  Y  T  D  R  D  I  D  L  A  L  Y  L  K  F  V  D  K  N  S  T  G  T  L  L  S  S  D  W  E  G  V  K  R  I  T  K  F  I  E  M  F  L  I  L  L  *  R  Y  L  V  H  D  M  L  Y  Q  I  F  I  F  L  K  F  L  K  L  V  F  T  *  I  N  C  Y  Q  M  K  N  K  F  W  L  R  *  Q  K  I  *  R  R  N  L  T  N  I  G  V  M  L  K  K  *  I  R  W  F  S  Y  H  V  F  W  I  L  V  T  N  L  V  L  L  A  L  H  L  R  R  C  L  Q  K  K  G  L  L  *  K  M  V  C  E  R  T  W  K  L  C  L  M  S  I  Q  T  P  F  Q  M  I   </first_frame>
            <second_frame>  E  A  N  V  S  I  E  R  D  R  Q  A  V  R  Y  I  R  Q  S  P  A  R  W  K  N  F  Q  E  C  C  E  D  E  I  L  L  K  S  L  Y  A  W  M  F  L  Q  V  G  I  P  P  T  *  C  *  A  G  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  T  W  H  Y  I  L  S  L  L  I  K  I  L  Q  V  H  F  *  V  V  I  G  R  A  *  R  E  L  Q  N  L  L  K  C  F  *  S  Y  F  E  D  I  W  F  T  T  C  Y  I  K  S  S  F  S  *  N  F  S  S  W  C  L  L  E  S  I  A  I  K  *  R  T  S  F  G  *  D  S  R  K  Y  K  G  E  I  *  Q  I  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  C  F  G  S  S  S  Q  I  *  Y  S  W  L  C  T  *  E  D  V  C  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  V  *  *  V  Y  K  P  H  F  K  *  *  </second_frame>
            <third_frame>   K  Q  M  C  L  L  N  E  I  G  K  P  *  D  T  S  G  N  L  L  L  G  G  K  I  F  K  N  V  V  K  M  K  S  C  *  K  V  F  M  L  G  C  S  Y  K  L  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  R  G  N  C  R  V  H  R  S  *  Y  *  L  G  T  I  S  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  Y  *  N  V  F  N  L  T  L  K  I  S  G  S  R  H  V  I  S  N  L  H  F  L  E  I  S  Q  V  G  V  Y  L  N  Q  L  L  S  N  E  E  Q  V  L  A  K  I  A  E  N  I  K  E  K  F  D  K  Y  W  G  D  A  E  K  M  N  K  M  V  F  I  P  C  V  L  D  P  R  H  K  F  S  T  L  G  F  A  L  K  K  M  F  A  E  K  G  A  A  I  E  N  G  V  R  T  Y  M  E  A  L  F  N  E  Y  T  N  P  I  S  N  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5180" stop="5539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVFNLTLKISGSRHVISNLHFLEISQVGVYLNQLLSNEEQVLAKIAENIKEKFDKYWGDAEKMNKMVFIPCVLDPRHKFSTLGFALKKMFAEKGAAIENGVRTYMEALFNEYTNPISNDK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4962" stop="5201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLAKKSLCLDVPTSWNSTYMMLSRVIEYEGAIVEYTDRDIDLALYLKFVDKNSTGTLLSSDWEGVKRITKFIEMFLILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7725" PGL_stop="17345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7725" e_stop="7877"/>
            <exon e_start="16696" e_stop="17345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7725" e_stop="7877" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7878" i_stop="16695" i_length="8818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16696" e_stop="17345" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7725" stop="7877"/>
              <exon start="16696" stop="17067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7728" stop="7877"/>
              <exon start="16696" stop="17059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7728" stop="7877"/>
              <exon start="16696" stop="16921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7730" stop="7877"/>
              <exon start="16696" stop="17310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7730" stop="7877"/>
              <exon start="16696" stop="17299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7730" stop="7877"/>
              <exon start="16696" stop="16958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7794" stop="7877"/>
              <exon start="16696" stop="17310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16696" stop="16893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16754" stop="17345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16766" stop="17233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCAAATCTCAACTCTCGTCAGTCGTCTAAGATACCCGCAGCTCGTCGTCCATCTTCTCTTAAGGCTCAGGCCAGCCACTGCTCAGTCCTCACTGACTGTTAAGTGCTCGCTGCCCGGAACTGTTCAGTGCTCGTGACTCACGCCTCGCAG : GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCGATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGAGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGATCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTGACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGGTTTTAGCATCCTTCCTTTCTTTTCCAACAACATAATGGACCAAAGATTTCCTGCTCACTTGTCTTGTTCTCTTTTTGTGAGTTTAATAACTAGTGTTTTGTTTTTCTTATTATGAAAACAAACAAAAGATGTTTTGGAGCACTAAGTTGTTGGTCTAACAATTTTAAACATTAGATTAGATGAGCAAATGAATAAGAAGAAAAAAGTGATGGTCTCATAACTTGTTTTGATAGACTTATTTTAAGTATTTT</gDNA_template>
            <first_frame> L  S  N  L  N  S  R  Q  S  S  K  I  P  A  A  R  R  P  S  S  L  K  A  Q  A  S  H  C  S  V  L  T  D  C  *  V  L  A  A  R  N  C  S  V  L  V  T  H  A  S  Q  :  D  E  W  L  E  S  L  *  Q  K  Q  L  G  D  I  N  I  H  G  K  K  S  W  Q  N  T  R  M  S  F  Q  R  E  F  G  V  T  G  S  L  E  P  G  N  L  W  G  *  V  L  A  I  E  L  V  C  A  R  K  L  L  L  L  D  K  I  G  H  T  I  Q  R  E  R  K  *  E  R  S  R  K  G  T  S  V  T  E  Y  Q  Q  K  N  G  Q  R  Q  P  N  *  C  K  K  C  L  K  C  W  L  I  T  G  R  E  S  G  K  G  K  *  K  Q  K  K  M  L  P  E  N  H  C  K  N  R  F  *  H  P  S  F  L  F  Q  Q  H  N  G  P  K  I  S  C  S  L  V  L  F  S  F  C  E  F  N  N  *  C  F  V  F  L  I  M  K  T  N  K  R  C  F  G  A  L  S  C  W  S  N  N  F  K  H  *  I  R  *  A  N  E  *  E  E  K  S  D  G  L  I  T  C  F  D  R  L  I  L  S  I   </first_frame>
            <second_frame>  S  Q  I  S  T  L  V  S  R  L  R  Y  P  Q  L  V  V  H  L  L  L  R  L  R  P  A  T  A  Q  S  S  L  T  V  K  C  S  L  P  G  T  V  Q  C  S  *  L  T  P  R  R :   T  N  G  W  K  V  C  S  K  S  S  W  A  I  S  I  S  M  A  R  K  V  G  K  I  Q  G  *  A  F  K  G  S  L  G  L  L  G  A  W  S  L  E  T  S  G  D  E  C  S  P  S  S  S  S  A  Q  G  S  C  C  C  W  T  R  L  A  I  R  S  S  E  K  G  N  E  N  E  A  E  R  A  Q  V  *  Q  N  I  S  R  K  T  G  K  D  S  R  T  D  A  K  N  A  *  N  V  G  *  L  Q  E  E  K  V  G  K  E  N  E  S  R  R  R  C  C  Q  K  I  I  A  R  I  G  F  S  I  L  P  F  F  S  N  N  I  M  D  Q  R  F  P  A  H  L  S  C  S  L  F  V  S  L  I  T  S  V  L  F  F  L  L  *  K  Q  T  K  D  V  L  E  H  *  V  V  G  L  T  I  L  N  I  R  L  D  E  Q  M  N  K  K  K  K  V  M  V  S  *  L  V  L  I  D  L  F  *  V  F  </second_frame>
            <third_frame>   L  K  S  Q  L  S  S  V  V  *  D  T  R  S  S  S  S  I  F  S  *  G  S  G  Q  P  L  L  S  P  H  *  L  L  S  A  R  C  P  E  L  F  S  A  R  D  S  R  L  A   : G  R  M  A  G  K  S  V  A  K  A  V  G  R  Y  Q  Y  P  W  Q  E  K  L  A  K  Y  K  D  E  L  S  K  G  V  W  G  Y  W  E  L  G  A  W  K  P  L  G  M  S  A  R  H  R  A  R  L  R  K  E  V  V  V  A  G  Q  D  W  P  Y  D  P  A  R  K  E  M  R  T  K  Q  K  G  H  K  C  D  R  I  S  A  E  K  R  A  K  T  A  E  L  M  Q  K  M  P  E  M  L  A  D  Y  R  K  R  K  W  E  R  K  M  K  A  E  E  D  A  A  R  K  S  L  Q  E  *  V  L  A  S  F  L  S  F  P  T  T  *  W  T  K  D  F  L  L  T  C  L  V  L  F  L  *  V  *  *  L  V  F  C  F  S  Y  Y  E  N  K  Q  K  M  F  W  S  T  K  L  L  V  *  Q  F  *  T  L  D  *  M  S  K  *  I  R  R  K  K  *  W  S  H  N  L  F  *  *  T  Y  F  K  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7823" stop="7877"/>
                    <exon start="16696" stop="17093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSARCPELFSARDSRLAGRMAGKSVAKAVGRYQYPWQEKLAKYKDELSKGVWGYWELGAWKPLGMSARHRARLRKEVVVAGQDWPYDPARKEMRTKQKGHKCDRISAEKRAKTAELMQKMPEMLADYRKRKWERKMKAEEDAARKSLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30370" PGL_stop="29680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30370" e_stop="30308"/>
            <exon e_start="30226" e_stop="29680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.767" acc_prob="0.958" e_score="0.952"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="30370" e_stop="30308" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.767" acc_prob="0.958">
            <gDNA_intron_boundary i_start="30307" i_stop="30227" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="30226" e_stop="29680" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30370" stop="30308"/>
              <exon start="30226" stop="29680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416075" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGAAAGCCAGGCAAAAATTAAACGATACATGACAATGATGGACTCAATGACTAATGAAG : AATTGGATAGTTCCAACCCTAAGCTTATGACCGACTCCCGAATTATGCGGATAGCTAGGGGTTCCGGCCGCCAAGTGCATGAGGTAATGGATATGATGGAGGAATACAAACGACTGGCTAAGATATGGAGTAAGATGAAGGGACTTAAGATTCCAAAGAAGGGAGAGATGAGCGCCTTGTCTCGAAACATGAATGCACAACACATGAGCAAAGTCTTGCCTCCCCAGATGTTGAAACAAATAGGCGGTATGGGTGGTTTGCAGAACTTGATGAAGCAAATGGGTTCTGCCAAGGACATGATGGGTGGTATGGGTGGTATGTTTGGTGGTGGAGACAAGTAAACATGAAAGCACAATTAGCAGTTAAAACTCAAAGCTGGCAAATCTTTTTTCTTTTTTTTGTTAACTGGTAAAGAACATCTTAACCCCAGAGTTTCCTCTTTCTCCTTGTATTAGTGGTCATAGATTTTGAAATTTTAGGAAGCAGATAATGTCAAATTTTCAATAGAAGGATTTGCTATGATTCATGTAGCTTGATGATTTTCTTT</gDNA_template>
            <first_frame> K  M  K  A  R  Q  K  L  N  D  T  *  Q  *  W  T  Q  *  L  M  K  :  N  W  I  V  P  T  L  S  L  *  P  T  P  E  L  C  G  *  L  G  V  P  A  A  K  C  M  R  *  W  I  *  W  R  N  T  N  D  W  L  R  Y  G  V  R  *  R  D  L  R  F  Q  R  R  E  R  *  A  P  C  L  E  T  *  M  H  N  T  *  A  K  S  C  L  P  R  C  *  N  K  *  A  V  W  V  V  C  R  T  *  *  S  K  W  V  L  P  R  T  *  W  V  V  W  V  V  C  L  V  V  E  T  S  K  H  E  S  T  I  S  S  *  N  S  K  L  A  N  L  F  S  F  F  C  *  L  V  K  N  I  L  T  P  E  F  P  L  S  P  C  I  S  G  H  R  F  *  N  F  R  K  Q  I  M  S  N  F  Q  *  K  D  L  L  *  F  M  *  L  D  D  F  L  </first_frame>
            <second_frame>  K  *  K  P  G  K  N  *  T  I  H  D  N  D  G  L  N  D  *  *  R :   I  G  *  F  Q  P  *  A  Y  D  R  L  P  N  Y  A  D  S  *  G  F  R  P  P  S  A  *  G  N  G  Y  D  G  G  I  Q  T  T  G  *  D  M  E  *  D  E  G  T  *  D  S  K  E  G  R  D  E  R  L  V  S  K  H  E  C  T  T  H  E  Q  S  L  A  S  P  D  V  E  T  N  R  R  Y  G  W  F  A  E  L  D  E  A  N  G  F  C  Q  G  H  D  G  W  Y  G  W  Y  V  W  W  W  R  Q  V  N  M  K  A  Q  L  A  V  K  T  Q  S  W  Q  I  F  F  L  F  F  V  N  W  *  R  T  S  *  P  Q  S  F  L  F  L  L  V  L  V  V  I  D  F  E  I  L  G  S  R  *  C  Q  I  F  N  R  R  I  C  Y  D  S  C  S  L  M  I  F  F </second_frame>
            <third_frame>   N  E  S  Q  A  K  I  K  R  Y  M  T  M  M  D  S  M  T  N  E   : E  L  D  S  S  N  P  K  L  M  T  D  S  R  I  M  R  I  A  R  G  S  G  R  Q  V  H  E  V  M  D  M  M  E  E  Y  K  R  L  A  K  I  W  S  K  M  K  G  L  K  I  P  K  K  G  E  M  S  A  L  S  R  N  M  N  A  Q  H  M  S  K  V  L  P  P  Q  M  L  K  Q  I  G  G  M  G  G  L  Q  N  L  M  K  Q  M  G  S  A  K  D  M  M  G  G  M  G  G  M  F  G  G  G  D  K  *  T  *  K  H  N  *  Q  L  K  L  K  A  G  K  S  F  F  F  F  L  L  T  G  K  E  H  L  N  P  R  V  S  S  F  S  L  Y  *  W  S  *  I  L  K  F  *  E  A  D  N  V  K  F  S  I  E  G  F  A  M  I  H  V  A  *  *  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30368" stop="30308"/>
                    <exon start="30226" stop="29886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGGMGGMFGGGDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35720" PGL_stop="32930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35720" e_stop="35330"/>
            <exon e_start="34293" e_stop="34194"/>
            <exon e_start="33991" e_stop="33838"/>
            <exon e_start="33073" e_stop="32930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35720" e_stop="35330" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35329" i_stop="34294" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34293" e_stop="34194" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="34193" i_stop="33992" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33991" e_stop="33838" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33837" i_stop="33074" i_length="764"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="33073" e_stop="32930" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35720" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35688" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35684" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35684" stop="35330"/>
              <exon start="34293" stop="34233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35676" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35669" stop="35330"/>
              <exon start="34293" stop="34203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35667" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33838"/>
              <exon start="33073" stop="32930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35667" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35665" stop="35330"/>
              <exon start="34293" stop="34194"/>
              <exon start="33991" stop="33838"/>
              <exon start="33073" stop="33016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35578" stop="35330"/>
              <exon start="34293" stop="34226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTCAGTTCCAAACCTCTCCATCCTCACCAATATTCATCATTTGGGGAATTGTTGATTCAAAACCCTAAATATTATCTCATGATTCTTATTCTTAGCCCTAATTATCGATCATCATCGTCCAATTCTTGATTCGATAATCGATTTGTTAATTCAAGATGGTGTTAGCAGAATTAGGGGGGAGCATATCGCGTGCTCTCCAGCAGATGAGCAATGCTACAATTATTGATGAGAAAGTTCTGAACGAATGCCTCAATGAAATCACTCGTGCTCTTCTTCAAGCTGATGTTCAGTTTAAGCTTGTTCGTGATATGACCACTAATATTAAGAAAATTGTCAATCTTGACGATCTTGCTGCTGGACATAACAAGCGTAGGATCATCCAACAG : GCGGTTTTTAATGAGCTCTGCAAAATATTGGATCCTGGGAAGCCTTCTTTTACACCGAAAAAAGGAAAACCCAGTATTGTCATGTTTGTTGGTTTGCAAG : GGTCTGGAAAGACAACAACATGTACAAAGTATGCATATTACCACCAGAAAAAAGGTTGGAAACCAGCTTTAGTGTGTGCTGATACATTTAGAGCTGGTGCTTTCGATCAATTGAAGCAGAATGCAACAAAAGCCAAGATACCCTTTTATGGGAG : CTACACGGAGTCAGACCCTGTGAAAATAGCAGTTGATGGTGTTGAAACATTTAAGAAGGAAAATTGTGATCTAATAATTGTTGATACAAGTGGACGCCACAAACAAGAAGCTGCTCTTTTTGAAGAGATGCGACAAGTTGCTGA</gDNA_template>
            <first_frame> Y  F  S  V  P  N  L  S  I  L  T  N  I  H  H  L  G  N  C  *  F  K  T  L  N  I  I  S  *  F  L  F  L  A  L  I  I  D  H  H  R  P  I  L  D  S  I  I  D  L  L  I  Q  D  G  V  S  R  I  R  G  E  H  I  A  C  S  P  A  D  E  Q  C  Y  N  Y  *  *  E  S  S  E  R  M  P  Q  *  N  H  S  C  S  S  S  S  *  C  S  V  *  A  C  S  *  Y  D  H  *  Y  *  E  N  C  Q  S  *  R  S  C  C  W  T  *  Q  A  *  D  H  P  T   : G  G  F  *  *  A  L  Q  N  I  G  S  W  E  A  F  F  Y  T  E  K  R  K  T  Q  Y  C  H  V  C  W  F  A  R :   V  W  K  D  N  N  M  Y  K  V  C  I  L  P  P  E  K  R  L  E  T  S  F  S  V  C  *  Y  I  *  S  W  C  F  R  S  I  E  A  E  C  N  K  S  Q  D  T  L  L  W  E  :  L  H  G  V  R  P  C  E  N  S  S  *  W  C  *  N  I  *  E  G  K  L  *  S  N  N  C  *  Y  K  W  T  P  Q  T  R  S  C  S  F  *  R  D  A  T  S  C  * </first_frame>
            <second_frame>  I  F  Q  F  Q  T  S  P  S  S  P  I  F  I  I  W  G  I  V  D  S  K  P  *  I  L  S  H  D  S  Y  S  *  P  *  L  S  I  I  I  V  Q  F  L  I  R  *  S  I  C  *  F  K  M  V  L  A  E  L  G  G  S  I  S  R  A  L  Q  Q  M  S  N  A  T  I  I  D  E  K  V  L  N  E  C  L  N  E  I  T  R  A  L  L  Q  A  D  V  Q  F  K  L  V  R  D  M  T  T  N  I  K  K  I  V  N  L  D  D  L  A  A  G  H  N  K  R  R  I  I  Q  Q  :  A  V  F  N  E  L  C  K  I  L  D  P  G  K  P  S  F  T  P  K  K  G  K  P  S  I  V  M  F  V  G  L  Q   : G  S  G  K  T  T  T  C  T  K  Y  A  Y  Y  H  Q  K  K  G  W  K  P  A  L  V  C  A  D  T  F  R  A  G  A  F  D  Q  L  K  Q  N  A  T  K  A  K  I  P  F  Y  G  S :   Y  T  E  S  D  P  V  K  I  A  V  D  G  V  E  T  F  K  K  E  N  C  D  L  I  I  V  D  T  S  G  R  H  K  Q  E  A  A  L  F  E  E  M  R  Q  V  A   </second_frame>
            <third_frame>   F  F  S  S  K  P  L  H  P  H  Q  Y  S  S  F  G  E  L  L  I  Q  N  P  K  Y  Y  L  M  I  L  I  L  S  P  N  Y  R  S  S  S  S  N  S  *  F  D  N  R  F  V  N  S  R  W  C  *  Q  N  *  G  G  A  Y  R  V  L  S  S  R  *  A  M  L  Q  L  L  M  R  K  F  *  T  N  A  S  M  K  S  L  V  L  F  F  K  L  M  F  S  L  S  L  F  V  I  *  P  L  I  L  R  K  L  S  I  L  T  I  L  L  L  D  I  T  S  V  G  S  S  N  R :   R  F  L  M  S  S  A  K  Y  W  I  L  G  S  L  L  L  H  R  K  K  E  N  P  V  L  S  C  L  L  V  C  K  :  G  L  E  R  Q  Q  H  V  Q  S  M  H  I  T  T  R  K  K  V  G  N  Q  L  *  C  V  L  I  H  L  E  L  V  L  S  I  N  *  S  R  M  Q  Q  K  P  R  Y  P  F  M  G   : A  T  R  S  Q  T  L  *  K  *  Q  L  M  V  L  K  H  L  R  R  K  I  V  I  *  *  L  L  I  Q  V  D  A  T  N  K  K  L  L  F  L  K  R  C  D  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35566" stop="35330"/>
                    <exon start="34293" stop="34194"/>
                    <exon start="33991" stop="33838"/>
                    <exon start="33073" stop="32932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKMVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39657" PGL_stop="38895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39657" e_stop="38895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="39657" e_stop="38895" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39657" stop="38895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGAGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTACCTCCAGGGCTGTCTGGAGTGCATCCGGTATTCCATGTGTCGATGTTAAAAAGATACCATGGGGATGGGAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTAGCAGAAGCGACGGACCCCACGATGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCT</gDNA_template>
            <first_frame> G  F  D  R  E  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  G  *  T  S  L  V  E  S  F  T  H  E  R  G  D  A  V  W  *  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  E  S  R  R  G  G  L  *  V  S  L  T  S  R  A  V  W  S  A  S  G  I  P  C  V  D  V  K  K  I  P  W  G  W  E  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  T  D  F  N  S  G  K  T  S  R  S  D  G  P  H  D  G  P  S  R  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  D  S  I  E  K  V  K  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  R  E  K  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  F  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  Q  Q  T  S  I  L  E  K  L  A  E  A  T  D  P  T  M  D  R  Q  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  K  N  R  L  S </second_frame>
            <third_frame>   I  R  *  R  K  *  S  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  R  V  N  K  S  C  *  K  F  H  P  *  K  G  *  C  G  L  V  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  R  E  *  E  R  W  L  M  S  *  P  Y  L  Q  G  C  L  E  C  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  G  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  R  I  C  E  K  N  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  L  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  N  R  L  Q  F  W  K  N  *  Q  K  R  R  T  P  R  W  T  V  K  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39656" stop="39072"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIEKVKSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVEEATWEKEADMREKYPHLFTDSGTPFRPCFPSFDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39718" PGL_stop="39894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39718" e_stop="39894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="39718" e_stop="39894" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39718" stop="39894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATGTCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCGCACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  M  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  A  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  C  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  V  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  R  T  R  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0009J11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41199" PGL_stop="43910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41199" e_stop="43910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="41199" e_stop="43910" e_length="2712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41199" stop="41911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41199" stop="41794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41199" stop="41724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41270" stop="41628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41719" stop="42377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41788" stop="42549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41788" stop="42448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42015" stop="42557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42191" stop="42521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42398" stop="42957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42402" stop="43166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42482" stop="43272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42484" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42558" stop="43256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43120" stop="43839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43123" stop="43786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43478" stop="43910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGAAAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTTTTACCCAATTCTTCACTGTCTCGATTTTAGAAAGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATTCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTTTAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATAATACGTACCGGATTGGAAGTGTAGTTACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAGGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCATCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCCCTAGTGTAAGAACCATTAAACTCACCTCCTTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGAACTGAAGCAGAGTTGAGTGGCATATCTGGATAGTGCACAAAACTTAGACTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTAAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTTCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGTCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCACGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTTCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTTCCCCTAGAAGACGTCCTCCCACGACCTCTTCCACGACCCCTCGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  E  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  F  Y  P  I  L  H  C  L  D  F  R  K  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  F  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  K  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  F  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  N  T  Y  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  D  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  G  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  I  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  A  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  P  *  C  K  N  H  *  T  H  L  L  S  E  T  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  N  *  S  R  V  E  W  H  I  W  I  V  H  K  T  *  T  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  T  R  P  K  S  *  V  V  P  L  L  V  D  T  K  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  L  E  N  H  K  H  P  S  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  F  V  L  F  P  *  K  T  S  S  H  D  L  F  H  D  P  S  P  L  F  F </first_frame>
            <second_frame>  N  P  L  K  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  F  T  Q  F  F  T  V  S  I  L  E  R  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  R  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  F  I  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  V  I  L  *  G  G  L  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  I  I  R  T  G  L  E  V  *  L  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  S  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  P  S  V  R  T  I  K  L  T  S  F  P  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  A  E  L  S  G  I  S  G  *  C  T  K  L  R  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  *  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  S  S  Q  T  W  K  C  V  Y  V  Q  W  N  I  H  A  G  S  H  S  S  R  T  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  F  P  S  I  R  W  A  R  C  S  S  S  S  P  R  R  R  P  P  T  T  S  S  T  T  P  R  R  C  S   </second_frame>
            <third_frame>   I  P  *  K  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  R  F  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  V  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  S  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  S  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  V  P  D  W  K  C  S  Y  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  R  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  R  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  S  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  E  L  K  Q  S  *  V  A  Y  L  D  S  A  Q  N  L  D  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  *  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  F  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  V  V  R  R  G  N  V  S  M  S  N  G  T  S  M  R  G  A  I  V  A  A  R  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  S  L  V  S  D  G  L  G  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41926" stop="42171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEIIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41463" stop="41702"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSKGIRKTKGHHYKFVMPIPRSKSSLWHIHCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43687" stop="43908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFSFPILPFSYYFLSRWRSHFPSIRWARCSSSSPRRRPPTTSSTTPRRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43712" stop="43909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGISSFCTCSVSPSSPSLITSSVGGGVTSLVSDGLGVRPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41395" stop="41592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAARAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42941" stop="43135"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43216" PGL_stop="41771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43216" e_stop="43030"/>
            <exon e_start="42284" e_stop="41771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="43216" e_stop="43030" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43029" i_stop="42285" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="42284" e_stop="41771" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43216" stop="43030"/>
              <exon start="42284" stop="41771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGTCTAAGTTTTGTGCACTATCCAGATATGCCACTCAACTCTGCTTCAGTTCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTAACTACACTTCCAATCCGGTACGTATTATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTAAACCCCCTTATAGAATGACTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  V  *  V  L  C  T  I  Q  I  C  H  S  T  L  L  Q  F  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  T  Y  Y  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  *  T  P  L  *  N  D  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  S  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  S  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  N  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  K  P  P  Y  R  M  T  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  S  L  S  F  V  H  Y  P  D  M  P  L  N  S  A  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  Y  V  L  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  N  P  L  I  E  *  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43215" stop="43030"/>
                    <exon start="42284" stop="41772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYESKFCALSRYATQLCFSSQERIRRFVKGLRSELRISALQIAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGNYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISKPPYRMTPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45351" PGL_stop="43917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45351" e_stop="45088"/>
            <exon e_start="44973" e_stop="43917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="45351" e_stop="45088" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45087" i_stop="44974" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="44973" e_stop="43917" e_length="1057"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45351" stop="45088"/>
              <exon start="44973" stop="44716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44860" stop="44625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44700" stop="43975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44700" stop="44050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44700" stop="44125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44202" stop="43917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCAGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGATACCAGGATAGTATATG : GATCAGAGTGTCACATTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAATGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGCCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTTAGATACTCTTAGTTTAGTAATTTAAAGGTAGATATTCTTGTGATGATGACTTCCAGATTTTGGGGATAATGATAAGTTTTTGAGTTATAGAAGTTGATTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTAAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCCTTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGACGCCTTTACCTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCCAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  Q  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  I  P  G  *  Y  M  :  D  Q  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  M  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  P  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  F  R  Y  S  *  F  S  N  L  K  V  D  I  L  V  M  M  T  S  R  F  W  G  *  *  *  V  F  E  L  *  K  L  I  I  Y  E  F  K  S  S  A  L  L  S  V  Y  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  K  G  T  P  L  P  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  S  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  R  V  S  H  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  C  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  D  T  L  S  L  V  I  *  R  *  I  F  L  *  *  *  L  P  D  F  G  D  N  D  K  F  L  S  Y  R  S  *  L  F  M  S  L  S  L  P  H  Y  F  L  F  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  P  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  R  G  R  L  Y  L  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  P  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  D  T  R  I  V  Y   : G  S  E  C  H  I  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  A  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  *  I  L  L  V  *  *  F  K  G  R  Y  S  C  D  D  D  F  Q  I  L  G  I  M  I  S  F  *  V  I  E  V  D  Y  L  *  V  *  V  F  R  I  T  F  C  L  Y  Y  I  K  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  L  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  Q  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44153" stop="43917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVRGRLYLSLRGYKTLGKFHSFILSFVLLLESNWYPGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="54981" PGL_stop="54215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54981" e_stop="54215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="54981" e_stop="54215" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54981" stop="54352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54648" stop="54215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTCCAAAAATGGCCCTTTTTCTCTCAATACAAATACCTCTACTACTACTATCTTTTTTCTTCTTTCCTCTAGGGTTGTCATTCACCGTCATAATGTCGGACTCCGGTGCTCTAGTCGATGCTCCACAAACCGGCTTCTCGATGAATAACAATCGTGCACGAACCGATCCTCGTGAGCAAGAAGCCGTTTACGACATTATGAGGGCTACGGGGAACGATTGGGCCATCGATATCCCTGATGTTTGTCGTGGTCGATGGCATGGTATTGAGTGCATGCCGGATAATGACAATGTGTACCACGTTGTCTCACTTTCCTTCGGTGCATTGTCCGATGACACAGCGTTTCCTACGTGCGACTCGACTCATTCCTTCATTTCACCTTCGGTTAGAAAACTTCCGCACCTTCGGATTTTGTTCTTCTATCGTTGCTTTAGTAACAATCCTCAGCCCATTCCAGGATTTTTAGCCCAATTACGGCCCACTTTGCAAACACTAGTGTTAAGGGAAAATGGGTTCACAGGGCCCATTCCTAATGAACTGGGTAACCTAACCCGTTTGAGAGTTCTGGATCTTCACAAAAACAATCTTGATGGTTCAATACCCATCTCTCTGGGTCGGATCACCGGTTTGAGGTCATTAGATTTGAGTGACAACAAACTAACCGGTTCTATTCCGAGTTTAACTTTCCCTCAGTTGAATATCTTGGACCTCAACCAAAATCACCTTACGAGTTCAATTCCATCCACACTCATGAGCTGTCATTCG</gDNA_template>
            <first_frame> I  F  Q  K  W  P  F  F  S  Q  Y  K  Y  L  Y  Y  Y  Y  L  F  S  S  F  L  *  G  C  H  S  P  S  *  C  R  T  P  V  L  *  S  M  L  H  K  P  A  S  R  *  I  T  I  V  H  E  P  I  L  V  S  K  K  P  F  T  T  L  *  G  L  R  G  T  I  G  P  S  I  S  L  M  F  V  V  V  D  G  M  V  L  S  A  C  R  I  M  T  M  C  T  T  L  S  H  F  P  S  V  H  C  P  M  T  Q  R  F  L  R  A  T  R  L  I  P  S  F  H  L  R  L  E  N  F  R  T  F  G  F  C  S  S  I  V  A  L  V  T  I  L  S  P  F  Q  D  F  *  P  N  Y  G  P  L  C  K  H  *  C  *  G  K  M  G  S  Q  G  P  F  L  M  N  W  V  T  *  P  V  *  E  F  W  I  F  T  K  T  I  L  M  V  Q  Y  P  S  L  W  V  G  S  P  V  *  G  H  *  I  *  V  T  T  N  *  P  V  L  F  R  V  *  L  S  L  S  *  I  S  W  T  S  T  K  I  T  L  R  V  Q  F  H  P  H  S  *  A  V  I   </first_frame>
            <second_frame>  Y  S  K  N  G  P  F  S  L  N  T  N  T  S  T  T  T  I  F  F  L  L  S  S  R  V  V  I  H  R  H  N  V  G  L  R  C  S  S  R  C  S  T  N  R  L  L  D  E  *  Q  S  C  T  N  R  S  S  *  A  R  S  R  L  R  H  Y  E  G  Y  G  E  R  L  G  H  R  Y  P  *  C  L  S  W  S  M  A  W  Y  *  V  H  A  G  *  *  Q  C  V  P  R  C  L  T  F  L  R  C  I  V  R  *  H  S  V  S  Y  V  R  L  D  S  F  L  H  F  T  F  G  *  K  T  S  A  P  S  D  F  V  L  L  S  L  L  *  *  Q  S  S  A  H  S  R  I  F  S  P  I  T  A  H  F  A  N  T  S  V  K  G  K  W  V  H  R  A  H  S  *  *  T  G  *  P  N  P  F  E  S  S  G  S  S  Q  K  Q  S  *  W  F  N  T  H  L  S  G  S  D  H  R  F  E  V  I  R  F  E  *  Q  Q  T  N  R  F  Y  S  E  F  N  F  P  S  V  E  Y  L  G  P  Q  P  K  S  P  Y  E  F  N  S  I  H  T  H  E  L  S  F  </second_frame>
            <third_frame>   I  P  K  M  A  L  F  L  S  I  Q  I  P  L  L  L  L  S  F  F  F  F  P  L  G  L  S  F  T  V  I  M  S  D  S  G  A  L  V  D  A  P  Q  T  G  F  S  M  N  N  N  R  A  R  T  D  P  R  E  Q  E  A  V  Y  D  I  M  R  A  T  G  N  D  W  A  I  D  I  P  D  V  C  R  G  R  W  H  G  I  E  C  M  P  D  N  D  N  V  Y  H  V  V  S  L  S  F  G  A  L  S  D  D  T  A  F  P  T  C  D  S  T  H  S  F  I  S  P  S  V  R  K  L  P  H  L  R  I  L  F  F  Y  R  C  F  S  N  N  P  Q  P  I  P  G  F  L  A  Q  L  R  P  T  L  Q  T  L  V  L  R  E  N  G  F  T  G  P  I  P  N  E  L  G  N  L  T  R  L  R  V  L  D  L  H  K  N  N  L  D  G  S  I  P  I  S  L  G  R  I  T  G  L  R  S  L  D  L  S  D  N  K  L  T  G  S  I  P  S  L  T  F  P  Q  L  N  I  L  D  L  N  Q  N  H  L  T  S  S  I  P  S  T  L  M  S  C  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54979" stop="54215"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKMALFLSIQIPLLLLSFFFFPLGLSFTVIMSDSGALVDAPQTGFSMNNNRARTDPREQEAVYDIMRATGNDWAIDIPDVCRGRWHGIECMPDNDNVYHVVSLSFGALSDDTAFPTCDSTHSFISPSVRKLPHLRILFFYRCFSNNPQPIPGFLAQLRPTLQTLVLRENGFTGPIPNELGNLTRLRVLDLHKNNLDGSIPISLGRITGLRSLDLSDNKLTGSIPSLTFPQLNILDLNQNHLTSSIPSTLMSCHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="60449" PGL_stop="57675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60449" e_stop="60335"/>
            <exon e_start="59775" e_stop="59655"/>
            <exon e_start="59473" e_stop="59389"/>
            <exon e_start="59278" e_stop="59200"/>
            <exon e_start="59069" e_stop="58956"/>
            <exon e_start="58855" e_stop="58743"/>
            <exon e_start="58290" e_stop="58180"/>
            <exon e_start="58100" e_stop="57675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60449" e_stop="60335" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.956">
            <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59775" e_stop="59655" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59473" e_stop="59389" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59278" e_stop="59200" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.774">
            <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59069" e_stop="58956" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.972">
            <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58855" e_stop="58743" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58742" i_stop="58291" i_length="452"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58290" e_stop="58180" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.964">
            <gDNA_intron_boundary i_start="58179" i_stop="58101" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="58100" e_stop="57675" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60433" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60433" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60430" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="58058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60427" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60423" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="59011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60422" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60420" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60420" stop="60335"/>
              <exon start="59775" stop="59707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60414" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="59022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60411" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60410" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60405" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59772" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59766" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59748" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="58000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59735" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59692" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59690" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59207" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59023" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59001" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369542" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58972" stop="58956"/>
              <exon start="58855" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58838" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58787" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58783" stop="58743"/>
              <exon start="58290" stop="58180"/>
              <exon start="58100" stop="57828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238648" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58281" stop="58180"/>
              <exon start="58100" stop="57691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58258" stop="58180"/>
              <exon start="58100" stop="58023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58257" stop="58180"/>
              <exon start="58100" stop="57828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239150" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG : CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA : ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA : GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG : GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG : CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAG : GGTCTTACACAGGAGTTGAGCCAGGAGGGTGCCTGTGACAGGGCAATCTTCCCGGACTCGAGTATCTTGATCACAAGATGTGCTATGGTTGGTAACTTGAATGTGGATGGA : GGTGATCGTTGCAATCTTGATCTAGTACCGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACCATATTCAGATTCTGAGGATTAACTTTCAGTACATATATACGACTCGTGATGTTTATAGTTTAGTGTTATCGATGGAAGTCTTTCACACGTGCGTGTATTCGATTTCAACTATTTACCTTTGTGATAAAGAAAATGTGTAGAATTACTAAAAGGAATGAATCTCCAACCTTATACTGTGAAGTATCTAGTTATGGTGTCTTTACTAGTTGGTTTGTAATTTGTATAGAACTTTGATACTTCACTTGTGGCATGCAGCAAAAACAAGCTCTTGATAAAAACTCTTGTATTTTGAATATTTACACCTAGTTCAAAGTGAGTTAATTTCAAC</gDNA_template>
            <first_frame> L  S  H  P  T  A  S  K  M  A  A  A  S  T  S  P  S  L  F  P  A  T  R  S  A  S  N  T  N  T  S  P  S  V  S  N  I  Y   : A  T  S  F  M  G  A  H  L  R  T  Y  Y  P  A  T  R  K  L  V  R  I  H  R  G  I  V  A  A  A  V  A  T  S  P  A  E  E  I  K  E :   Y  V  L  P  S  W  A  K  F  D  L  G  I  S  P  V  Y  W  K  T  M  N  G  L  P  P  T  A  :  G  E  R  L  K  L  F  Y  N  P  A  A  S  N  M  V  P  N  E  D  F  G  I  A  F  N   : G  G  F  N  Q  P  I  M  C  G  G  E  P  R  I  M  L  E  K  I  R  G  K  A  D  P  P  I  Y  T  I  Q  L  C  I  P  K  H   : A  L  S  L  I  F  S  F  T  N  G  I  E  W  D  G  P  Y  R  L  Q  F  Q  V  P  K  A  W  R  N  K  P  T  E  F  F  T  E  :  G  L  T  Q  E  L  S  Q  E  G  A  C  D  R  A  I  F  P  D  S  S  I  L  I  T  R  C  A  M  V  G  N  L  N  V  D  G  :  G  D  R  C  N  L  D  L  V  P  G  C  I  D  P  D  S  P  Q  Y  N  P  L  A  N  V  D  D  G  S  C  P  P  Y  S  D  S  E  D  *  L  S  V  H  I  Y  D  S  *  C  L  *  F  S  V  I  D  G  S  L  S  H  V  R  V  F  D  F  N  Y  L  P  L  *  *  R  K  C  V  E  L  L  K  G  M  N  L  Q  P  Y  T  V  K  Y  L  V  M  V  S  L  L  V  G  L  *  F  V  *  N  F  D  T  S  L  V  A  C  S  K  N  K  L  L  I  K  T  L  V  F  *  I  F  T  P  S  S  K  *  V  N  F  N </first_frame>
            <second_frame>  F  L  I  L  Q  L  P  K  W  L  Q  H  Q  Q  V  P  L  Y  F  L  Q  L  V  L  L  L  I  L  I  Q  V  P  L  F  Q  I  F  M  :  L  Q  V  L  W  A  R  T  *  E  H  I  I  Q  L  Q  G  N  *  *  G  S  I  G  V  *  L  L  R  Q  L  Q  L  P  L  Q  R  K  S  K   : N  M  C  F  L  H  G  L  N  L  T  L  E  Y  H  Q  Y  I  G  K  Q  *  M  V  F  L  Q  L  Q :   E  R  D  *  S  F  F  T  I  Q  L  Q  A  I  W  Y  L  M  K  I  L  E  S  R  L  M  :  E  V  L  T  S  L  S  C  V  E  V  S  L  G  *  C  S  R  K  S  E  E  K  P  T  L  L  F  I  R  F  S  Y  V  F  P  S  M  :  L  L  V  *  S  S  H  S  Q  M  E  S  N  G  M  V  P  I  D  Y  N  F  K  S  P  R  L  G  E  I  N  Q  L  N  S  S  L  R :   V  L  H  R  S  *  A  R  R  V  P  V  T  G  Q  S  S  R  T  R  V  S  *  S  Q  D  V  L  W  L  V  T  *  M  W  M  E :   V  I  V  A  I  L  I  *  Y  R  D  A  L  I  Q  I  L  P  S  I  I  H  *  P  M  *  M  M  D  L  V  H  H  I  Q  I  L  R  I  N  F  Q  Y  I  Y  T  T  R  D  V  Y  S  L  V  L  S  M  E  V  F  H  T  C  V  Y  S  I  S  T  I  Y  L  C  D  K  E  N  V  *  N  Y  *  K  E  *  I  S  N  L  I  L  *  S  I  *  L  W  C  L  Y  *  L  V  C  N  L  Y  R  T  L  I  L  H  L  W  H  A  A  K  T  S  S  *  *  K  L  L  Y  F  E  Y  L  H  L  V  Q  S  E  L  I  S   </second_frame>
            <third_frame>   F  S  S  Y  S  F  Q  N  G  C  S  I  N  K  S  L  F  I  S  C  N  S  F  C  F  *  Y  *  Y  K  S  L  C  F  K  Y  L  C :   Y  K  F  Y  G  R  A  L  E  N  I  L  S  S  Y  K  E  T  S  K  D  P  *  G  Y  S  C  C  G  S  C  N  F  P  C  R  G  N  Q  R  :  I  C  A  S  F  M  G  *  I  *  P  W  N  I  T  S  I  L  E  N  N  E  W  S  S  S  N  C   : R  R  E  T  E  A  F  L  Q  S  S  C  K  Q  Y  G  T  *  *  R  F  W  N  R  V  *  W :   R  F  *  P  A  Y  H  V  W  R  *  A  *  D  N  A  R  E  N  Q  R  K  S  R  P  S  Y  L  Y  D  S  V  M  Y  S  Q  A  C :   S  *  F  D  L  L  I  H  K  W  N  R  M  G  W  S  L  *  T  T  I  S  S  P  Q  G  L  E  K  *  T  N  *  I  L  H  *   : G  S  Y  T  G  V  E  P  G  G  C  L  *  Q  G  N  L  P  G  L  E  Y  L  D  H  K  M  C  Y  G  W  *  L  E  C  G  W   : R  *  S  L  Q  S  *  S  S  T  G  M  H  *  S  R  F  S  P  V  *  S  T  S  Q  C  R  *  W  I  L  S  T  I  F  R  F  *  G  L  T  F  S  T  Y  I  R  L  V  M  F  I  V  *  C  Y  R  W  K  S  F  T  R  A  C  I  R  F  Q  L  F  T  F  V  I  K  K  M  C  R  I  T  K  R  N  E  S  P  T  L  Y  C  E  V  S  S  Y  G  V  F  T  S  W  F  V  I  C  I  E  L  *  Y  F  T  C  G  M  Q  Q  K  Q  A  L  D  K  N  S  C  I  L  N  I  Y  T  *  F  K  V  S  *  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60449" stop="60335"/>
                    <exon start="59775" stop="59655"/>
                    <exon start="59473" stop="59389"/>
                    <exon start="59278" stop="59200"/>
                    <exon start="59069" stop="58956"/>
                    <exon start="58855" stop="58743"/>
                    <exon start="58290" stop="58180"/>
                    <exon start="58100" stop="57981"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSHPTASKMAAASTSPSLFPATRSASNTNTSPSVSNIYATSFMGAHLRTYYPATRKLVRIHRGIVAAAVATSPAEEIKEYVLPSWAKFDLGISPVYWKTMNGLPPTAGERLKLFYNPAASNMVPNEDFGIAFNGGFNQPIMCGGEPRIMLEKIRGKADPPIYTIQLCIPKHALSLIFSFTNGIEWDGPYRLQFQVPKAWRNKPTEFFTEGLTQELSQEGACDRAIFPDSSILITRCAMVGNLNVDGGDRCNLDLVPGCIDPDSPQYNPLANVDDGSCPPYSDSED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60449" e_stop="60335"/>
            <exon e_start="59775" e_stop="59655"/>
            <exon e_start="59473" e_stop="59389"/>
            <exon e_start="59278" e_stop="59200"/>
            <exon e_start="59069" e_stop="58956"/>
            <exon e_start="58855" e_stop="58583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60449" e_stop="60335" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.956">
            <gDNA_intron_boundary i_start="60334" i_stop="59776" i_length="559"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59775" e_stop="59655" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="59654" i_stop="59474" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59473" e_stop="59389" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59388" i_stop="59279" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59278" e_stop="59200" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.774">
            <gDNA_intron_boundary i_start="59199" i_stop="59070" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59069" e_stop="58956" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.972">
            <gDNA_intron_boundary i_start="58955" i_stop="58856" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="58855" e_stop="58583" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60433" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60427" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60423" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="59011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60422" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60420" stop="60335"/>
              <exon start="59775" stop="59707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60417" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60414" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="59022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60411" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60411" stop="60335"/>
              <exon start="59775" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59772" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59766" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59735" stop="59655"/>
              <exon start="59473" stop="59389"/>
              <exon start="59278" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59273" stop="59200"/>
              <exon start="59069" stop="58956"/>
              <exon start="58855" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCTACAGCTTCCAAAATGGCTGCAGCATCAACAAGTCCCTCTTTATTTCCTGCAACTCGTTCTGCTTCTAATACTAATACAAGTCCCTCTGTTTCAAATATTTATG : CTACAAGTTTTATGGGCGCGCACTTGAGAACATATTATCCAGCTACAAGGAAACTAGTAAGGATCCATAGGGGTATAGTTGCTGCGGCAGTTGCAACTTCCCCTGCAGAGGAAATCAAAGA : ATATGTGCTTCCTTCATGGGCTAAATTTGACCTTGGAATATCACCAGTATATTGGAAAACAATGAATGGTCTTCCTCCAACTGCA : GGAGAGAGACTGAAGCTTTTTTACAATCCAGCTGCAAGCAATATGGTACCTAATGAAGATTTTGGAATCGCGTTTAATG : GAGGTTTTAACCAGCCTATCATGTGTGGAGGTGAGCCTAGGATAATGCTCGAGAAAATCAGAGGAAAAGCCGACCCTCCTATTTATACGATTCAGTTATGTATTCCCAAGCATG : CTCTTAGTTTGATCTTCTCATTCACAAATGGAATCGAATGGGATGGTCCCTATAGACTACAATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCAACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAGTTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCTAAAGTTTGGTTCTTGAATTGTGCTGCAAGCGCGATGAATTACAATACAGATTTTGATATGGACTTAA</gDNA_template>
            <first_frame> L  S  H  P  T  A  S  K  M  A  A  A  S  T  S  P  S  L  F  P  A  T  R  S  A  S  N  T  N  T  S  P  S  V  S  N  I  Y   : A  T  S  F  M  G  A  H  L  R  T  Y  Y  P  A  T  R  K  L  V  R  I  H  R  G  I  V  A  A  A  V  A  T  S  P  A  E  E  I  K  E :   Y  V  L  P  S  W  A  K  F  D  L  G  I  S  P  V  Y  W  K  T  M  N  G  L  P  P  T  A  :  G  E  R  L  K  L  F  Y  N  P  A  A  S  N  M  V  P  N  E  D  F  G  I  A  F  N   : G  G  F  N  Q  P  I  M  C  G  G  E  P  R  I  M  L  E  K  I  R  G  K  A  D  P  P  I  Y  T  I  Q  L  C  I  P  K  H   : A  L  S  L  I  F  S  F  T  N  G  I  E  W  D  G  P  Y  R  L  Q  F  Q  V  P  K  A  W  R  N  K  P  T  E  F  F  T  E  V  A  N  I  Q  V  L  V  F  *  L  T  N  *  G  A  R  I  M  N  D  F  D  L  F  I  *  H  *  L  P  K  V  W  F  L  N  C  A  A  S  A  M  N  Y  N  T  D  F  D  M  D  L  </first_frame>
            <second_frame>  F  L  I  L  Q  L  P  K  W  L  Q  H  Q  Q  V  P  L  Y  F  L  Q  L  V  L  L  L  I  L  I  Q  V  P  L  F  Q  I  F  M  :  L  Q  V  L  W  A  R  T  *  E  H  I  I  Q  L  Q  G  N  *  *  G  S  I  G  V  *  L  L  R  Q  L  Q  L  P  L  Q  R  K  S  K   : N  M  C  F  L  H  G  L  N  L  T  L  E  Y  H  Q  Y  I  G  K  Q  *  M  V  F  L  Q  L  Q :   E  R  D  *  S  F  F  T  I  Q  L  Q  A  I  W  Y  L  M  K  I  L  E  S  R  L  M  :  E  V  L  T  S  L  S  C  V  E  V  S  L  G  *  C  S  R  K  S  E  E  K  P  T  L  L  F  I  R  F  S  Y  V  F  P  S  M  :  L  L  V  *  S  S  H  S  Q  M  E  S  N  G  M  V  P  I  D  Y  N  F  K  S  P  R  L  G  E  I  N  Q  L  N  S  S  L  R  *  Q  T  F  K  F  *  S  F  S  *  Q  T  E  V  L  V  L  *  T  I  L  T  S  L  Y  D  T  N  C  L  K  F  G  S  *  I  V  L  Q  A  R  *  I  T  I  Q  I  L  I  W  T  * </second_frame>
            <third_frame>   F  S  S  Y  S  F  Q  N  G  C  S  I  N  K  S  L  F  I  S  C  N  S  F  C  F  *  Y  *  Y  K  S  L  C  F  K  Y  L  C :   Y  K  F  Y  G  R  A  L  E  N  I  L  S  S  Y  K  E  T  S  K  D  P  *  G  Y  S  C  C  G  S  C  N  F  P  C  R  G  N  Q  R  :  I  C  A  S  F  M  G  *  I  *  P  W  N  I  T  S  I  L  E  N  N  E  W  S  S  S  N  C   : R  R  E  T  E  A  F  L  Q  S  S  C  K  Q  Y  G  T  *  *  R  F  W  N  R  V  *  W :   R  F  *  P  A  Y  H  V  W  R  *  A  *  D  N  A  R  E  N  Q  R  K  S  R  P  S  Y  L  Y  D  S  V  M  Y  S  Q  A  C :   S  *  F  D  L  L  I  H  K  W  N  R  M  G  W  S  L  *  T  T  I  S  S  P  Q  G  L  E  K  *  T  N  *  I  L  H  *  G  S  K  H  S  S  S  S  L  L  V  N  K  L  R  C  S  Y  Y  E  R  F  *  P  L  Y  M  T  L  I  A  *  S  L  V  L  E  L  C  C  K  R  D  E  L  Q  Y  R  F  *  Y  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60449" stop="60335"/>
                    <exon start="59775" stop="59655"/>
                    <exon start="59473" stop="59389"/>
                    <exon start="59278" stop="59200"/>
                    <exon start="59069" stop="58956"/>
                    <exon start="58855" stop="58713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSHPTASKMAAASTSPSLFPATRSASNTNTSPSVSNIYATSFMGAHLRTYYPATRKLVRIHRGIVAAAVATSPAEEIKEYVLPSWAKFDLGISPVYWKTMNGLPPTAGERLKLFYNPAASNMVPNEDFGIAFNGGFNQPIMCGGEPRIMLEKIRGKADPPIYTIQLCIPKHALSLIFSFTNGIEWDGPYRLQFQVPKAWRNKPTEFFTEVANIQVLVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="61260" PGL_stop="61613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61260" e_stop="61613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="61260" e_stop="61613" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61260" stop="61567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATTAACTCGTTTGTTCATGAATCTAATGTCAAATTACAGAAGAATTGATTCGAGAGTGAGTACAATAAGTATATATTTCTTTGGTGCTAAATTATTACACACTTAATATATAATTTTACAAGTAGTGTGCAGAAGATTTGGCAATAATCTTCAAAATAGTAGAATTTAACCCAAACTGAATCAAATTATGTGCAATCTATACCATGTCATCAGGTTGAGCATAAACCTATACAAATATGCTTAGAGAAAAATGGTGAATGTAATAGAAAATAAACTTAGCAGAAAACTCGCGAACACGATATTTGAGGAAGATGAAGGAGGTGGGATGCTTCCTGCTGGAGTATTTGAGG</gDNA_template>
            <first_frame> R  Y  *  L  V  C  S  *  I  *  C  Q  I  T  E  E  L  I  R  E  *  V  Q  *  V  Y  I  S  L  V  L  N  Y  Y  T  L  N  I  *  F  Y  K  *  C  A  E  D  L  A  I  I  F  K  I  V  E  F  N  P  N  *  I  K  L  C  A  I  Y  T  M  S  S  G  *  A  *  T  Y  T  N  M  L  R  E  K  W  *  M  *  *  K  I  N  L  A  E  N  S  R  T  R  Y  L  R  K  M  K  E  V  G  C  F  L  L  E  Y  L  R </first_frame>
            <second_frame>  D  I  N  S  F  V  H  E  S  N  V  K  L  Q  K  N  *  F  E  S  E  Y  N  K  Y  I  F  L  W  C  *  I  I  T  H  L  I  Y  N  F  T  S  S  V  Q  K  I  W  Q  *  S  S  K  *  *  N  L  T  Q  T  E  S  N  Y  V  Q  S  I  P  C  H  Q  V  E  H  K  P  I  Q  I  C  L  E  K  N  G  E  C  N  R  K  *  T  *  Q  K  T  R  E  H  D  I  *  G  R  *  R  R  W  D  A  S  C  W  S  I  *   </second_frame>
            <third_frame>   I  L  T  R  L  F  M  N  L  M  S  N  Y  R  R  I  D  S  R  V  S  T  I  S  I  Y  F  F  G  A  K  L  L  H  T  *  Y  I  I  L  Q  V  V  C  R  R  F  G  N  N  L  Q  N  S  R  I  *  P  K  L  N  Q  I  M  C  N  L  Y  H  V  I  R  L  S  I  N  L  Y  K  Y  A  *  R  K  M  V  N  V  I  E  N  K  L  S  R  K  L  A  N  T  I  F  E  E  D  E  G  G  G  M  L  P  A  G  V  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0009J11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="63489" PGL_stop="61309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63489" e_stop="63210"/>
            <exon e_start="61832" e_stop="61309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.674" e_score="0.932"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="63489" e_stop="63210" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.674">
            <gDNA_intron_boundary i_start="63209" i_stop="61833" i_length="1377"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="61832" e_stop="61309" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63489" stop="63210"/>
              <exon start="61832" stop="61482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63483" stop="63210"/>
              <exon start="61832" stop="61381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63415" stop="63210"/>
              <exon start="61832" stop="61309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63304" stop="63210"/>
              <exon start="61832" stop="61338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61722" stop="61320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238811" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238898" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTAGTAACCTACAATCTTTTCTTTCTTTTTTTTGGTTGCAAAAAACTAGAGCATTTTCTATCACAAATATTTTTATTTTAAAAAAAAATAAAAAAGATAGAGAAGATGGAGAAAATTGTTTGTGGTGCTTTAATTATAGCAATTTTACTACAAATCACAATAGCACAAACAGAACATATAGTTGGGGATAGCTTTGGTTGGTCTATACCAATTAATGGTGCTGCAGCTTATGCGATGTGGGCTGATGCAAATTCAATCAAAATTGGTGACACTTTAG : TATTCAAATTTACGCAAGGAAACCATGATGTACAAGAAGTATCAAGAAGTTCATATGAAGAATGCAGTACACAAAATTCTATAGGTGAAGCAATCAAGAAAGGGCCTGCAAAAATAACAGTTAAAACTCTTGGTGATCATTATTATATTTGCACTGTTGGTGAGCACTGTTTAGCTGGTCAAAAAATGGCCATTAAAGTTACAAGTTCAAATTCCTCAGCCTCAAATACTCCAGCAGGAAGCATCCCACCTCCTTCATCTTCCTCAAATATCGTGTTCGCGAGTTTTCTGCTAAGTTTATTTTCTATTACATTCACCATTTTTCTCTAAGCATATTTGTATAGGTTTATGCTCAACCTGATGACATGGTATAGATTGCACATAATTTGATTCAGTTTGGGTTAAATTCTACTATTTTGAAGATTATTGCCAAATCTTCTGCACACTACTTGTAAAATTATATATTAAGTGTGTAATAATTTAGCACCAAAGAAATATATACTTATTGTACTCACTCTCGAATCA</gDNA_template>
            <first_frame> S  L  V  T  Y  N  L  F  F  L  F  F  G  C  K  K  L  E  H  F  L  S  Q  I  F  L  F  *  K  K  I  K  K  I  E  K  M  E  K  I  V  C  G  A  L  I  I  A  I  L  L  Q  I  T  I  A  Q  T  E  H  I  V  G  D  S  F  G  W  S  I  P  I  N  G  A  A  A  Y  A  M  W  A  D  A  N  S  I  K  I  G  D  T  L   : V  F  K  F  T  Q  G  N  H  D  V  Q  E  V  S  R  S  S  Y  E  E  C  S  T  Q  N  S  I  G  E  A  I  K  K  G  P  A  K  I  T  V  K  T  L  G  D  H  Y  Y  I  C  T  V  G  E  H  C  L  A  G  Q  K  M  A  I  K  V  T  S  S  N  S  S  A  S  N  T  P  A  G  S  I  P  P  P  S  S  S  S  N  I  V  F  A  S  F  L  L  S  L  F  S  I  T  F  T  I  F  L  *  A  Y  L  Y  R  F  M  L  N  L  M  T  W  Y  R  L  H  I  I  *  F  S  L  G  *  I  L  L  F  *  R  L  L  P  N  L  L  H  T  T  C  K  I  I  Y  *  V  C  N  N  L  A  P  K  K  Y  I  L  I  V  L  T  L  E  S </first_frame>
            <second_frame>  L  *  *  P  T  I  F  S  F  F  F  L  V  A  K  N  *  S  I  F  Y  H  K  Y  F  Y  F  K  K  K  *  K  R  *  R  R  W  R  K  L  F  V  V  L  *  L  *  Q  F  Y  Y  K  S  Q  *  H  K  Q  N  I  *  L  G  I  A  L  V  G  L  Y  Q  L  M  V  L  Q  L  M  R  C  G  L  M  Q  I  Q  S  K  L  V  T  L  *  :  Y  S  N  L  R  K  E  T  M  M  Y  K  K  Y  Q  E  V  H  M  K  N  A  V  H  K  I  L  *  V  K  Q  S  R  K  G  L  Q  K  *  Q  L  K  L  L  V  I  I  I  I  F  A  L  L  V  S  T  V  *  L  V  K  K  W  P  L  K  L  Q  V  Q  I  P  Q  P  Q  I  L  Q  Q  E  A  S  H  L  L  H  L  P  Q  I  S  C  S  R  V  F  C  *  V  Y  F  L  L  H  S  P  F  F  S  K  H  I  C  I  G  L  C  S  T  *  *  H  G  I  D  C  T  *  F  D  S  V  W  V  K  F  Y  Y  F  E  D  Y  C  Q  I  F  C  T  L  L  V  K  L  Y  I  K  C  V  I  I  *  H  Q  R  N  I  Y  L  L  Y  S  L  S  N   </second_frame>
            <third_frame>   S  S  N  L  Q  S  F  L  S  F  F  W  L  Q  K  T  R  A  F  S  I  T  N  I  F  I  L  K  K  N  K  K  D  R  E  D  G  E  N  C  L  W  C  F  N  Y  S  N  F  T  T  N  H  N  S  T  N  R  T  Y  S  W  G  *  L  W  L  V  Y  T  N  *  W  C  C  S  L  C  D  V  G  *  C  K  F  N  Q  N  W  *  H  F  S :   I  Q  I  Y  A  R  K  P  *  C  T  R  S  I  K  K  F  I  *  R  M  Q  Y  T  K  F  Y  R  *  S  N  Q  E  R  A  C  K  N  N  S  *  N  S  W  *  S  L  L  Y  L  H  C  W  *  A  L  F  S  W  S  K  N  G  H  *  S  Y  K  F  K  F  L  S  L  K  Y  S  S  R  K  H  P  T  S  F  I  F  L  K  Y  R  V  R  E  F  S  A  K  F  I  F  Y  Y  I  H  H  F  S  L  S  I  F  V  *  V  Y  A  Q  P  D  D  M  V  *  I  A  H  N  L  I  Q  F  G  L  N  S  T  I  L  K  I  I  A  K  S  S  A  H  Y  L  *  N  Y  I  L  S  V  *  *  F  S  T  K  E  I  Y  T  Y  C  T  H  S  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63405" stop="63210"/>
                    <exon start="61832" stop="61504"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKIKKIEKMEKIVCGALIIAILLQITIAQTEHIVGDSFGWSIPINGAAAYAMWADANSIKIGDTLVFKFTQGNHDVQEVSRSSYEECSTQNSIGEAIKKGPAKITVKTLGDHYYICTVGEHCLAGQKMAIKVTSSNSSASNTPAGSIPPPSSSSNIVFASFLLSLFSITFTIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="97951" PGL_stop="97621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97951" e_stop="97621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="97951" e_stop="97621" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97951" stop="97621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAGCGTTATAGTTTTAGCATTACAATCTAAGATTTCGAAATTTGGAAAAAGCCAAGTCATACCCAAAATTACATCTAAGTCCACCATTTCCAAGATAACTAAGTCTACATGAGTACTACTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATGTCAAGCAATTCACATTGTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAAAATCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  A  L  *  F  *  H  Y  N  L  R  F  R  N  L  E  K  A  K  S  Y  P  K  L  H  L  S  P  P  F  P  R  *  L  S  L  H  E  Y  Y  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  R  H  E  *  A  C  Q  A  I  H  I  V  I  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  N  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  F  E  I  W  K  K  P  S  H  T  Q  N  Y  I  *  V  H  H  F  Q  D  N  *  V  Y  M  S  T  T  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  D  T  N  R  H  V  K  Q  F  T  L  *  F  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  K  I  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  S  V  I  V  L  A  L  Q  S  K  I  S  K  F  G  K  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  H  C  N  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  K  S  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97820" stop="97623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTITDSPTGVETRIGMSSNSHCNLRPVANEEDTYENVDPGSNNTKSMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97651" PGL_stop="98311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97651" e_stop="98311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="97651" e_stop="98311" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97651" stop="98311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAAATTACAATGTGAATTGCTTGACATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGTAGTACTCATGTAGACTTAGTTATCTTGGAAATGGTGGACTTAGATGTAATTTTGGGTATGACTTGGCTTTTTCCAAATTTCGAAATCTTAGATTGTAATGCTAAAACTATAACGCTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGCTCGTATCATCTCCTTACTTCGCGCCAAGAGAATGGTTAGAAAAGGTTGTTTAGCTTTCTTGGCACACCTTAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGACCTTTCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGTCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  K  L  Q  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  S  T  H  V  D  L  V  I  L  E  M  V  D  L  D  V  I  L  G  M  T  W  L  F  P  N  F  E  I  L  D  C  N  A  K  T  I  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  A  R  I  I  S  L  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  S  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  S  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  N  Y  N  V  N  C  L  T  C  L  F  V  S  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  V  V  L  M  *  T  *  L  S  W  K  W  W  T  *  M  *  F  W  V  *  L  G  F  F  Q  I  S  K  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  L  V  S  S  P  Y  F  A  P  R  E  W  L  E  K  V  V  *  L  S  W  H  T  L  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  V  S  F  W  M  C  F  P  Q  T  F  L  V  C  H  R  I  G  I  S  T  F  V  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  S  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  I  T  M  *  I  A  *  H  A  Y  S  C  L  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  *  Y  S  C  R  L  S  Y  L  G  N  G  G  L  R  C  N  F  G  Y  D  L  A  F  S  K  F  R  N  L  R  L  *  C  *  N  Y  N  A  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  T  S  R  Q  E  N  G  *  K  R  L  F  S  F  L  G  T  P  *  G  *  Y  Y  P  S  T  F  N  *  V  G  F  N  S  P  *  V  S  G  C  V  S  R  R  P  F  W  Y  A  T  G  *  G  Y  R  L  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  V  P  T  S  R  V  V  K  Q  R  L  H  *  T  K  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97651" stop="98310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLKLQCELLDMPIRVSTPVGESVIVEKVYRSCLVTFMGSSTHVDLVILEMVDLDVILGMTWLFPNFEILDCNAKTITLAKPGTDPLVWEGDYTSTPARIISLLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLSGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKSQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="100197" PGL_stop="99166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100197" e_stop="99166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="100197" e_stop="99166" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100197" stop="99656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99752" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99752" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99752" stop="99199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGTCTTAGTTAGTCTGTCAACAATCACCCAAATAGAGTCATACTTACCCGTCGTCTTTGGAAGACCAACCATGAAGTCCATTGCAATTCTCTACCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACACTTCATCCTGCTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATTAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAACACACCTTCTTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAATAAACTGCTTTTCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACGCAGGCCAACAATCCTACCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAACCAGAGTCTGAACCTCTCTAGTCAATGGGCGTCTACAAACCTGTAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATGTCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTTATGCACTTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  V  L  V  S  L  S  T  I  T  Q  I  E  S  Y  L  P  V  V  F  G  R  P  T  M  K  S  I  A  I  L  Y  H  F  H  S  G  M  S  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  H  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  N  T  P  S  S  S  I  F  A  S  L  A  S  P  H  N  T  L  S  R  I  R  I  S  F  S  S  I  N  C  F  S  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  N  N  P  T  F  S  F  T  S  S  L  I  R  S  L  T  R  V  *  T  S  L  V  N  G  R  L  Q  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  M  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  L  C  T  F  N  C </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  S  *  L  V  C  Q  Q  S  P  K  *  S  H  T  Y  P  S  S  L  E  D  Q  P  *  S  P  L  Q  F  S  T  T  S  I  Q  E  *  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  T  S  S  C  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  L  N  H  R  R  G  V  H  I  P  F  P  *  F  S  T  H  L  L  H  R  F  L  L  L  *  P  L  L  T  I  P  Y  L  E  S  G  S  V  S  H  Q  *  T  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  R  R  P  T  I  L  P  S  H  L  L  L  A  S  *  G  H  *  P  E  S  E  P  L  *  S  M  G  V  Y  K  P  V  S  G  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  C  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  L  F  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  P  Q  P  T  P  N  H  G  *  D  N  Y  V  Y  A  L  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  S  L  S  *  S  V  N  N  H  P  N  R  V  I  L  T  R  R  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  E  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  A  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  *  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  H  T  F  F  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  N  P  D  Q  F  L  I  N  K  L  L  F  L  N  L  V  K  K  G  R  S  C  L  H  A  G  Q  Q  S  Y  L  L  I  Y  F  *  P  H  K  V  I  N  Q  S  L  N  L  S  S  Q  W  A  S  T  N  L  *  V  G  *  T  S  H  A  P  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  V  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  M  G  R  I  I  T  F  M  H  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99732" stop="99493"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILNTPSSSIFASLASPHNTLSRIRISFSSINCFSLILSRKEDLASTQANNPTFSFTSSLIRSLTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100030" stop="99806"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNHPNRVILTRRLWKTNHEVHCNSLPLPFRNEHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPAPPKMLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99727" stop="99521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIDAGYTYPSLNSQHTFFIDFCFFSLSSQYLISNPDQFLINKLLFLNLVKKGRSCLHAGQQSYLLIYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="104787" PGL_stop="106967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104787" e_stop="104841"/>
            <exon e_start="104961" e_stop="105749"/>
            <exon e_start="105847" e_stop="106090"/>
            <exon e_start="106264" e_stop="106742"/>
            <exon e_start="106825" e_stop="106967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.896" acc_prob="0.999" e_score="0.873"/>
          <exon-intron don_prob="0.976" acc_prob="0.990" e_score="0.912"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-intron don_prob="0.925" acc_prob="0.952" e_score="0.949"/>
          <exon-only e_score="0.874"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.873">
            <gDNA_exon_boundary e_start="104787" e_stop="104841" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.896" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104842" i_stop="104960" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="104961" e_stop="105749" e_length="789"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105750" i_stop="105846" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="105847" e_stop="106090" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106091" i_stop="106263" i_length="173"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="106264" e_stop="106742" e_length="479"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.952">
            <gDNA_intron_boundary i_start="106743" i_stop="106824" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.874">
            <gDNA_exon_boundary e_start="106825" e_stop="106967" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104841"/>
              <exon start="104961" stop="105552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105496" stop="105749"/>
              <exon start="105847" stop="105882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105696" stop="105749"/>
              <exon start="105847" stop="106090"/>
              <exon start="106264" stop="106539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106441" stop="106742"/>
              <exon start="106825" stop="106967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTCTTTCTATTTTTCCAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAG : ATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCTGAAGGAATTTGGAATGGTAGCATAAAAGAAAAGAGGTCTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATATTAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTAGATATAAAGGAATTATTGATGTAGGAGTCGTATGACTCTGGATTAATTTCTGCTTTAATGGAAAAATGGCGTCTAGAAAATCATACTTTTCACATGCGAACTGGCGAGACTACCATAACTTTACAAGATATTAAAATTTTATTTAGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGATGATTCTTTAGGGATTATCAGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTGGATGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAG : ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTT : TTTTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAACCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCGAGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGGGTGGCACATGGTTGTTCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCATGTACCCAATTTTTTGAATATCATTTTAAGCGTGATAAACGATCCAAAATAAAACAAGAAGATATAGATGAATTTAACTACACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTTCGTTGGTACATGAGGCATATCCTCATGGTCATTGTAAATTCACAACATGTTGTAAAAAAAGGGTATCAACACAGGGCAGGAAGACATGAGACATTA : CTAGGGGTCATGAAATTCAGTATCATCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGAGGAAGTTGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTCCAGGGAACGCGATTG</gDNA_template>
            <first_frame> K  S  F  Y  F  S  N  F  L  K  F  L  K  A  F  S  L  *   : D  M  H  P  S  N  V  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  H  H  R  S  E  G  I  W  N  G  S  I  K  E  K  R  S  C  L  Y  T  R  R  G  D  I  E  F  W  Q  H  I  K  Y  H  P  L  H  S  R  I  R  Q  Y  F  E  N  C  R  Y  K  G  I  I  D  V  G  V  V  *  L  W  I  N  F  C  F  N  G  K  M  A  S  R  K  S  Y  F  S  H  A  N  W  R  D  Y  H  N  F  T  R  Y  *  N  F  I  *  N  G  S  R  W  *  S  Y  N  F  K  W  R  *  F  F  R  D  Y  Q  *  T  R  N  D  I  *  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  L  Y  *  R  F  G  W  Y  *  *  S  L  N  *  A  *  S  A  T  K  I  *  I  I  F  I  M  V  I  W  W  I  N  I  F  E  *  I  Y  *  *  Y  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  T  S  H  I  I  I  F  I  *  L  F  M  S  C  I  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A   : D  L  G  M  G  K  N  Y  S  P  A  T  I  V  K  A  S  K  D  Q  S  T  *  G  F  N  C  A  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  R  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  K  L  F  I  F  Y  F  I  L  N  T  N  M  F :   F  S  V  N  V  V  L  I  I  I  L  L  N  Y  F  F  I  V  Y  L  A  T  L  F  G  R  C  Y  *  W  I  A  *  V  V  S  V  E  T  T  C  L  D  G  T  G  A  T  D  L  W  N  L  S  W  V  A  H  G  C  S  C  C  E  T  V  R  L  F  T  T  Y  S  W  T  M  Y  P  I  F  *  I  S  F  *  A  *  *  T  I  Q  N  K  T  R  R  Y  R  *  I  *  L  H  T  I  F  M  G  T  T  S  K  S  Y  I  S  T  S  I  C  K  *  S  N  R  L  L  S  L  V  H  E  A  Y  P  H  G  H  C  K  F  T  T  C  C  K  K  R  V  S  T  Q  G  R  K  T  *  D  I   : T  R  G  H  E  I  Q  Y  H  R  A  R  M  I  E  N  D  E  N  Q  S  N  E  M  R  Q  Y  A  E  E  V  A  R  I  S  M  E  S  M  N  A  A  F  Q  G  T  R  L </first_frame>
            <second_frame>  S  L  S  I  F  P  I  F  *  S  F  *  K  P  F  L  Y  K  :  I  C  I  R  Q  M  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  L  K  E  F  G  M  V  A  *  K  K  R  G  L  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  L  N  I  I  H  Y  I  L  A  S  V  N  I  L  K  I  V  D  I  K  E  L  L  M  *  E  S  Y  D  S  G  L  I  S  A  L  M  E  K  W  R  L  E  N  H  T  F  H  M  R  T  G  E  T  T  I  T  L  Q  D  I  K  I  L  F  R  M  V  V  D  G  S  P  I  I  L  N  G  D  D  S  L  G  I  I  S  R  Q  E  M  I  F  E  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  L  T  Y  K  L  I  D  Y  I  E  G  L  D  G  I  N  D  H  *  T  E  H  E  V  Q  Q  R  F  K  L  Y  L  L  W  L  Y  G  G  S  I  F  S  N  K  S  I  N  N  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  P  V  T  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  :  I  W  A  W  E  R  I  I  P  L  Q  P  L  S  K  P  L  R  T  N  Q  L  E  A  S  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  N  Y  S  Y  F  I  S  F  *  I  Q  I  C   : F  F  L  S  M  L  F  *  *  L  S  Y  L  I  I  F  L  *  F  I  W  Q  P  Y  S  E  D  V  I  N  G  L  P  E  W  C  R  S  R  Q  R  V  W  M  A  Q  V  P  L  I  Y  G  I  Y  R  G  W  H  M  V  V  R  V  V  R  Q  F  G  Y  L  Q  H  I  P  G  P  C  T  Q  F  F  E  Y  H  F  K  R  D  K  R  S  K  I  K  Q  E  D  I  D  E  F  N  Y  T  Q  Y  L  W  E  Q  R  Q  N  R  I  F  R  P  P  F  V  S  D  Q  T  D  Y  F  R  W  Y  M  R  H  I  L  M  V  I  V  N  S  Q  H  V  V  K  K  G  Y  Q  H  R  A  G  R  H  E  T  L  :  L  G  V  M  K  F  S  I  I  E  L  G  *  L  K  M  M  K  I  N  L  M  K  *  D  N  M  Q  R  K  L  L  V  F  Q  W  S  Q  *  M  R  P  S  R  E  R  D   </second_frame>
            <third_frame>   V  F  L  F  F  Q  F  S  K  V  F  K  S  L  F  F  I  R :   Y  A  S  V  K  C  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  S  S  S  F  *  R  N  L  E  W  *  H  K  R  K  E  V  L  L  I  Y  A  S  W  *  Y  *  I  L  A  T  Y  *  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  Y  *  C  R  S  R  M  T  L  D  *  F  L  L  *  W  K  N  G  V  *  K  I  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  L  E  W  *  *  M  V  V  L  *  F  *  M  E  M  I  L  *  G  L  S  V  D  K  K  *  Y  L  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  *  H  I  N  *  L  I  I  L  K  V  W  M  V  L  M  I  T  E  L  S  M  K  C  N  K  D  L  N  Y  I  Y  Y  G  Y  M  V  D  Q  Y  F  R  I  N  L  L  I  I  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  Q  S  H  Y  H  I  Y  I  I  V  Y  V  V  H  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R :   F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  G  P  I  N  L  R  L  Q  L  R  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  *  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  *  T  I  H  I  L  F  H  F  K  Y  K  Y  V  :  F  F  C  Q  C  C  F  N  N  Y  L  T  *  L  F  F  Y  S  L  F  G  N  L  I  R  K  M  L  L  M  D  C  L  S  G  V  G  R  D  N  V  S  G  W  H  R  C  H  *  F  M  E  F  I  V  G  G  T  W  L  F  V  L  *  D  S  S  V  I  Y  N  I  F  L  D  H  V  P  N  F  L  N  I  I  L  S  V  I  N  D  P  K  *  N  K  K  I  *  M  N  L  T  T  H  N  I  Y  G  N  N  V  K  I  V  Y  F  D  L  H  L  *  V  I  K  Q  I  T  F  V  G  T  *  G  I  S  S  W  S  L  *  I  H  N  M  L  *  K  K  G  I  N  T  G  Q  E  D  M  R  H  Y :   *  G  S  *  N  S  V  S  S  S  S  D  D  *  K  *  *  K  S  I  *  *  N  E  T  I  C  R  G  S  C  S  Y  F  N  G  V  N  E  C  G  L  P  G  N  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105510" stop="105749"/>
                    <exon start="105847" stop="106077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEHEVQQRFKLYLLWLYGGSIFSNKSINNINLDILIDMRNLDLMSTQAWGPVTLSYLYNCLCRASMKKSNEVCGFLSLVQIWAWERIIPLQPLSKPLRTNQLEASTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILNYSYFISF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106317" stop="106742"/>
                    <exon start="106825" stop="106863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWQPYSEDVINGLPEWCRSRQRVWMAQVPLIYGIYRGWHMVVRVVRQFGYLQHIPGPCTQFFEYHFKRDKRSKIKQEDIDEFNYTQYLWEQRQNRIFRPPFVSDQTDYFRWYMRHILMVIVNSQHVVKKGYQHRAGRHETLLGVMKFSIIELG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105198" stop="105509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYDSGLISALMEKWRLENHTFHMRTGETTITLQDIKILFRMVVDGSPIILNGDDSLGIISRQEMIFELTGWLPDTSCFSGVSRLLTYKLIDYIEGLDGINDH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104841" stop="105208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMHPSNVYVHPGPVEHDVLKIQVHHRSEGIWNGSIKEKRSCLYTRRGDIEFWQHIKYHPLHSRIRQYFENCRYKGIIDVGVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104787" e_stop="104841"/>
            <exon e_start="104961" e_stop="106104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.896" acc_prob="0.999" e_score="0.873"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.873">
            <gDNA_exon_boundary e_start="104787" e_stop="104841" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.896" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104842" i_stop="104960" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="104961" e_stop="106104" e_length="1144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104841"/>
              <exon start="104961" stop="105552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="106094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105613" stop="106104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTCTTTCTATTTTTCCAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAG : ATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCTGAAGGAATTTGGAATGGTAGCATAAAAGAAAAGAGGTCTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATATTAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTAGATATAAAGGAATTATTGATGTAGGAGTCGTATGACTCTGGATTAATTTCTGCTTTAATGGAAAAATGGCGTCTAGAAAATCATACTTTTCACATGCGAACTGGCGAGACTACCATAACTTTACAAGATATTAAAATTTTATTTAGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGATGATTCTTTAGGGATTATCAGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTGGATGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAA</gDNA_template>
            <first_frame> K  S  F  Y  F  S  N  F  L  K  F  L  K  A  F  S  L  *   : D  M  H  P  S  N  V  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  H  H  R  S  E  G  I  W  N  G  S  I  K  E  K  R  S  C  L  Y  T  R  R  G  D  I  E  F  W  Q  H  I  K  Y  H  P  L  H  S  R  I  R  Q  Y  F  E  N  C  R  Y  K  G  I  I  D  V  G  V  V  *  L  W  I  N  F  C  F  N  G  K  M  A  S  R  K  S  Y  F  S  H  A  N  W  R  D  Y  H  N  F  T  R  Y  *  N  F  I  *  N  G  S  R  W  *  S  Y  N  F  K  W  R  *  F  F  R  D  Y  Q  *  T  R  N  D  I  *  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  L  Y  *  R  F  G  W  Y  *  *  S  L  N  *  A  *  S  A  T  K  I  *  I  I  F  I  M  V  I  W  W  I  N  I  F  E  *  I  Y  *  *  Y  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  T  S  H  I  I  I  F  I  *  L  F  M  S  C  I  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A  G  I  H  I  F  *  L  N  I  F  Y  I  L  V  I  C  T  F  K  F  K  C  I  I  S  N  G  E  F  I  Y  C  R  F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  G  P  I  N  L  R  L  Q  L  R  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  *  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  *  T  I  H  I  L  F  H  F  K  Y  K  Y  V  W  *  I  F   </first_frame>
            <second_frame>  S  L  S  I  F  P  I  F  *  S  F  *  K  P  F  L  Y  K  :  I  C  I  R  Q  M  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  L  K  E  F  G  M  V  A  *  K  K  R  G  L  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  L  N  I  I  H  Y  I  L  A  S  V  N  I  L  K  I  V  D  I  K  E  L  L  M  *  E  S  Y  D  S  G  L  I  S  A  L  M  E  K  W  R  L  E  N  H  T  F  H  M  R  T  G  E  T  T  I  T  L  Q  D  I  K  I  L  F  R  M  V  V  D  G  S  P  I  I  L  N  G  D  D  S  L  G  I  I  S  R  Q  E  M  I  F  E  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  L  T  Y  K  L  I  D  Y  I  E  G  L  D  G  I  N  D  H  *  T  E  H  E  V  Q  Q  R  F  K  L  Y  L  L  W  L  Y  G  G  S  I  F  S  N  K  S  I  N  N  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  P  V  T  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  V  Y  I  F  F  N  *  I  F  F  I  Y  *  *  Y  A  L  L  N  L  S  A  L  *  V  M  V  N  L  F  I  V  D  L  G  M  G  K  N  Y  S  P  A  T  I  V  K  A  S  K  D  Q  S  T  *  G  F  N  C  A  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  R  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  K  L  F  I  F  Y  F  I  L  N  T  N  M  F  G  R  S  L  </second_frame>
            <third_frame>   V  F  L  F  F  Q  F  S  K  V  F  K  S  L  F  F  I  R :   Y  A  S  V  K  C  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  S  S  S  F  *  R  N  L  E  W  *  H  K  R  K  E  V  L  L  I  Y  A  S  W  *  Y  *  I  L  A  T  Y  *  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  Y  *  C  R  S  R  M  T  L  D  *  F  L  L  *  W  K  N  G  V  *  K  I  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  L  E  W  *  *  M  V  V  L  *  F  *  M  E  M  I  L  *  G  L  S  V  D  K  K  *  Y  L  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  *  H  I  N  *  L  I  I  L  K  V  W  M  V  L  M  I  T  E  L  S  M  K  C  N  K  D  L  N  Y  I  Y  Y  G  Y  M  V  D  Q  Y  F  R  I  N  L  L  I  I  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  Q  S  H  Y  H  I  Y  I  I  V  Y  V  V  H  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R  Y  T  Y  F  L  I  K  Y  F  L  Y  T  S  N  M  H  F  *  I  *  V  H  Y  K  *  W  *  I  Y  L  L  *  I  W  A  W  E  R  I  I  P  L  Q  P  L  S  K  P  L  R  T  N  Q  L  E  A  S  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  N  Y  S  Y  F  I  S  F  *  I  Q  I  C  L  V  D  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105198" stop="105509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYDSGLISALMEKWRLENHTFHMRTGETTITLQDIKILFRMVVDGSPIILNGDDSLGIISRQEMIFELTGWLPDTSCFSGVSRLLTYKLIDYIEGLDGINDH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105510" stop="105770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEHEVQQRFKLYLLWLYGGSIFSNKSINNINLDILIDMRNLDLMSTQAWGPVTLSYLYNCLCRASMKKSNEVCGFLSLVQVYIFFN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104841" stop="105208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMHPSNVYVHPGPVEHDVLKIQVHHRSEGIWNGSIKEKRSCLYTRRGDIEFWQHIKYHPLHSRIRQYFENCRYKGIIDVGVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105847" stop="106077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWAWERIIPLQPLSKPLRTNQLEASTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILNYSYFISF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="106030" e_stop="106087"/>
            <exon e_start="106261" e_stop="106742"/>
            <exon e_start="106825" e_stop="106967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.925" acc_prob="0.952" e_score="0.946"/>
          <exon-only e_score="0.874"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="106030" e_stop="106087" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106088" i_stop="106260" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="106261" e_stop="106742" e_length="482"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.952">
            <gDNA_intron_boundary i_start="106743" i_stop="106824" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.874">
            <gDNA_exon_boundary e_start="106825" e_stop="106967" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106030" stop="106087"/>
              <exon start="106261" stop="106742"/>
              <exon start="106825" stop="106893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106441" stop="106742"/>
              <exon start="106825" stop="106967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATAT : TTATTTTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTATAGTTTATTTGGCAACCTTATTCGGAAGATGTTATTAATGGATTGCCTGAGTGGTGTCGGTCGAGACAACGTGTCTGGATGGCACAGGTGCCACTGATTTATGGAATTTATCGTGGGTGGCACATGGTTGTTCGTGTTGTGAGACAGTTCGGTTATTTACAACATATTCCTGGACCATGTACCCAATTTTTTGAATATCATTTTAAGCGTGATAAACGATCCAAAATAAAACAAGAAGATATAGATGAATTTAACTACACACAATATTTATGGGAACAACGTCAAAATCGTATATTTCGACCTCCATTTGTAAGTGATCAAACAGATTACTTTCGTTGGTACATGAGGCATATCCTCATGGTCATTGTAAATTCACAACATGTTGTAAAAAAAGGGTATCAACACAGGGCAGGAAGACATGAGACATTA : CTAGGGGTCATGAAATTCAGTATCATCGAGCTCGGATGATTGAAAATGATGAAAATCAATCTAATGAAATGAGACAATATGCAGAGGAAGTTGCTCGTATTTCAATGGAGTCAATGAATGCGGCCTTCCAGGGAACGCGATTG</gDNA_template>
            <first_frame> F  N  I  I  S  I  L  N  Y  S  Y  F  I  S  F  *  I  Q  I   : F  I  F  L  S  M  L  F  *  *  L  S  Y  L  I  I  F  L  *  F  I  W  Q  P  Y  S  E  D  V  I  N  G  L  P  E  W  C  R  S  R  Q  R  V  W  M  A  Q  V  P  L  I  Y  G  I  Y  R  G  W  H  M  V  V  R  V  V  R  Q  F  G  Y  L  Q  H  I  P  G  P  C  T  Q  F  F  E  Y  H  F  K  R  D  K  R  S  K  I  K  Q  E  D  I  D  E  F  N  Y  T  Q  Y  L  W  E  Q  R  Q  N  R  I  F  R  P  P  F  V  S  D  Q  T  D  Y  F  R  W  Y  M  R  H  I  L  M  V  I  V  N  S  Q  H  V  V  K  K  G  Y  Q  H  R  A  G  R  H  E  T  L  :  L  G  V  M  K  F  S  I  I  E  L  G  *  L  K  M  M  K  I  N  L  M  K  *  D  N  M  Q  R  K  L  L  V  F  Q  W  S  Q  *  M  R  P  S  R  E  R  D   </first_frame>
            <second_frame>  L  I  L  L  V  S  *  T  I  H  I  L  F  H  F  K  Y  K  Y  :  L  F  F  C  Q  C  C  F  N  N  Y  L  T  *  L  F  F  Y  S  L  F  G  N  L  I  R  K  M  L  L  M  D  C  L  S  G  V  G  R  D  N  V  S  G  W  H  R  C  H  *  F  M  E  F  I  V  G  G  T  W  L  F  V  L  *  D  S  S  V  I  Y  N  I  F  L  D  H  V  P  N  F  L  N  I  I  L  S  V  I  N  D  P  K  *  N  K  K  I  *  M  N  L  T  T  H  N  I  Y  G  N  N  V  K  I  V  Y  F  D  L  H  L  *  V  I  K  Q  I  T  F  V  G  T  *  G  I  S  S  W  S  L  *  I  H  N  M  L  *  K  K  G  I  N  T  G  Q  E  D  M  R  H  Y :   *  G  S  *  N  S  V  S  S  S  S  D  D  *  K  *  *  K  S  I  *  *  N  E  T  I  C  R  G  S  C  S  Y  F  N  G  V  N  E  C  G  L  P  G  N  A  I  </second_frame>
            <third_frame>   *  Y  Y  *  Y  L  K  L  F  I  F  Y  F  I  L  N  T  N  I :   Y  F  S  V  N  V  V  L  I  I  I  L  L  N  Y  F  F  I  V  Y  L  A  T  L  F  G  R  C  Y  *  W  I  A  *  V  V  S  V  E  T  T  C  L  D  G  T  G  A  T  D  L  W  N  L  S  W  V  A  H  G  C  S  C  C  E  T  V  R  L  F  T  T  Y  S  W  T  M  Y  P  I  F  *  I  S  F  *  A  *  *  T  I  Q  N  K  T  R  R  Y  R  *  I  *  L  H  T  I  F  M  G  T  T  S  K  S  Y  I  S  T  S  I  C  K  *  S  N  R  L  L  S  L  V  H  E  A  Y  P  H  G  H  C  K  F  T  T  C  C  K  K  R  V  S  T  Q  G  R  K  T  *  D  I   : T  R  G  H  E  I  Q  Y  H  R  A  R  M  I  E  N  D  E  N  Q  S  N  E  M  R  Q  Y  A  E  E  V  A  R  I  S  M  E  S  M  N  A  A  F  Q  G  T  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106317" stop="106742"/>
                    <exon start="106825" stop="106863"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIWQPYSEDVINGLPEWCRSRQRVWMAQVPLIYGIYRGWHMVVRVVRQFGYLQHIPGPCTQFFEYHFKRDKRSKIKQEDIDEFNYTQYLWEQRQNRIFRPPFVSDQTDYFRWYMRHILMVIVNSQHVVKKGYQHRAGRHETLLGVMKFSIIELG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="104787" e_stop="104841"/>
            <exon e_start="104961" e_stop="106092"/>
            <exon e_start="106266" e_stop="106313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.896" acc_prob="0.999" e_score="0.873"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.873">
            <gDNA_exon_boundary e_start="104787" e_stop="104841" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.896" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104842" i_stop="104960" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="104961" e_stop="106092" e_length="1132"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106093" i_stop="106265" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="106266" e_stop="106313" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104787" stop="104841"/>
              <exon start="104961" stop="105552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105486" stop="106092"/>
              <exon start="106266" stop="106313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTCTTTCTATTTTTCCAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAG : ATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCTGAAGGAATTTGGAATGGTAGCATAAAAGAAAAGAGGTCTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATATTAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTAGATATAAAGGAATTATTGATGTAGGAGTCGTATGACTCTGGATTAATTTCTGCTTTAATGGAAAAATGGCGTCTAGAAAATCATACTTTTCACATGCGAACTGGCGAGACTACCATAACTTTACAAGATATTAAAATTTTATTTAGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGATGATTCTTTAGGGATTATCAGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTGGATGGTATTAATGATCACTGAACTGAGCATGAAGTGCAACAAAGATTTAAATTATATTTATTATGGTTATATGGTGGATCAATATTTTCGAATAAATCTATTAATAATATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGACCAGTCACATTATCATATTTATATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGTCAAAGCCTCTAAGGACCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAACTGATGAACAGGTATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTG : TTTCTGTCAATGTTGTTTTAATAATTATCTTACTTAATTATTTTTTTA</gDNA_template>
            <first_frame> K  S  F  Y  F  S  N  F  L  K  F  L  K  A  F  S  L  *   : D  M  H  P  S  N  V  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  Q  V  H  H  R  S  E  G  I  W  N  G  S  I  K  E  K  R  S  C  L  Y  T  R  R  G  D  I  E  F  W  Q  H  I  K  Y  H  P  L  H  S  R  I  R  Q  Y  F  E  N  C  R  Y  K  G  I  I  D  V  G  V  V  *  L  W  I  N  F  C  F  N  G  K  M  A  S  R  K  S  Y  F  S  H  A  N  W  R  D  Y  H  N  F  T  R  Y  *  N  F  I  *  N  G  S  R  W  *  S  Y  N  F  K  W  R  *  F  F  R  D  Y  Q  *  T  R  N  D  I  *  I  N  R  M  V  T  R  Y  *  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  L  Y  *  R  F  G  W  Y  *  *  S  L  N  *  A  *  S  A  T  K  I  *  I  I  F  I  M  V  I  W  W  I  N  I  F  E  *  I  Y  *  *  Y  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  T  S  H  I  I  I  F  I  *  L  F  M  S  C  I  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A  G  I  H  I  F  *  L  N  I  F  Y  I  L  V  I  C  T  F  K  F  K  C  I  I  S  N  G  E  F  I  Y  C  R  F  G  H  G  K  E  L  F  P  C  N  H  C  Q  S  L  *  G  P  I  N  L  R  L  Q  L  R  L  H  V  N  G  R  D  V  E  I  I  K  M  R  H  E  L  *  S  V  *  L  G  M  Y  *  I  I  *  L  M  N  R  Y  L  I  L  L  V  S  *  T  I  H  I  L  F  H  F  K  Y  K  Y  V  C :   F  C  Q  C  C  F  N  N  Y  L  T  *  L  F  F   </first_frame>
            <second_frame>  S  L  S  I  F  P  I  F  *  S  F  *  K  P  F  L  Y  K  :  I  C  I  R  Q  M  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  L  K  E  F  G  M  V  A  *  K  K  R  G  L  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  L  N  I  I  H  Y  I  L  A  S  V  N  I  L  K  I  V  D  I  K  E  L  L  M  *  E  S  Y  D  S  G  L  I  S  A  L  M  E  K  W  R  L  E  N  H  T  F  H  M  R  T  G  E  T  T  I  T  L  Q  D  I  K  I  L  F  R  M  V  V  D  G  S  P  I  I  L  N  G  D  D  S  L  G  I  I  S  R  Q  E  M  I  F  E  L  T  G  W  L  P  D  T  S  C  F  S  G  V  S  R  L  L  T  Y  K  L  I  D  Y  I  E  G  L  D  G  I  N  D  H  *  T  E  H  E  V  Q  Q  R  F  K  L  Y  L  L  W  L  Y  G  G  S  I  F  S  N  K  S  I  N  N  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  P  V  T  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  V  Y  I  F  F  N  *  I  F  F  I  Y  *  *  Y  A  L  L  N  L  S  A  L  *  V  M  V  N  L  F  I  V  D  L  G  M  G  K  N  Y  S  P  A  T  I  V  K  A  S  K  D  Q  S  T  *  G  F  N  C  A  C  T  *  M  D  A  T  *  K  S  S  K  *  G  T  N  C  N  R  C  D  *  G  C  T  R  *  S  N  *  *  T  G  I  *  Y  Y  *  Y  L  K  L  F  I  F  Y  F  I  L  N  T  N  M  F   : V  S  V  N  V  V  L  I  I  I  L  L  N  Y  F  F  </second_frame>
            <third_frame>   V  F  L  F  F  Q  F  S  K  V  F  K  S  L  F  F  I  R :   Y  A  S  V  K  C  I  R  T  S  W  S  S  R  A  *  C  I  K  N  S  S  S  S  S  F  *  R  N  L  E  W  *  H  K  R  K  E  V  L  L  I  Y  A  S  W  *  Y  *  I  L  A  T  Y  *  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  *  I  *  R  N  Y  *  C  R  S  R  M  T  L  D  *  F  L  L  *  W  K  N  G  V  *  K  I  I  L  F  T  C  E  L  A  R  L  P  *  L  Y  K  I  L  K  F  Y  L  E  W  *  *  M  V  V  L  *  F  *  M  E  M  I  L  *  G  L  S  V  D  K  K  *  Y  L  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  *  H  I  N  *  L  I  I  L  K  V  W  M  V  L  M  I  T  E  L  S  M  K  C  N  K  D  L  N  Y  I  Y  Y  G  Y  M  V  D  Q  Y  F  R  I  N  L  L  I  I  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  D  Q  S  H  Y  H  I  Y  I  I  V  Y  V  V  H  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R  Y  T  Y  F  L  I  K  Y  F  L  Y  T  S  N  M  H  F  *  I  *  V  H  Y  K  *  W  *  I  Y  L  L  *  I  W  A  W  E  R  I  I  P  L  Q  P  L  S  K  P  L  R  T  N  Q  L  E  A  S  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  T  D  E  Q  V  F  N  I  I  S  I  L  N  Y  S  Y  F  I  S  F  *  I  Q  I  C  L  :  F  L  S  M  L  F  *  *  L  S  Y  L  I  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105198" stop="105509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYDSGLISALMEKWRLENHTFHMRTGETTITLQDIKILFRMVVDGSPIILNGDDSLGIISRQEMIFELTGWLPDTSCFSGVSRLLTYKLIDYIEGLDGINDH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105510" stop="105770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEHEVQQRFKLYLLWLYGGSIFSNKSINNINLDILIDMRNLDLMSTQAWGPVTLSYLYNCLCRASMKKSNEVCGFLSLVQVYIFFN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104841" stop="105208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMHPSNVYVHPGPVEHDVLKIQVHHRSEGIWNGSIKEKRSCLYTRRGDIEFWQHIKYHPLHSRIRQYFENCRYKGIIDVGVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105847" stop="106077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWAWERIIPLQPLSKPLRTNQLEASTALARKWTRRRNHQNEARTVIGVIRDVLDNLTDEQVFNIISILNYSYFISF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="106696" PGL_stop="105864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106696" e_stop="106265"/>
            <exon e_start="106091" e_stop="105864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.953"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="106696" e_stop="106265" e_length="432"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106264" i_stop="106092" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="106091" e_stop="105864" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106696" stop="106265"/>
              <exon start="106091" stop="105947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106671" stop="106265"/>
              <exon start="106091" stop="105865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276989" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106358" stop="106265"/>
              <exon start="106091" stop="105864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393845" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATGTTGTGAATTTACAATGACCATGAGGATATGCCTCATGTACCAACGAAAGTAATCTGTTTGATCACTTACAAATGGAGGTCGAAATATACGATTTTGACGTTGTTCCCATAAATATTGTGTGTAGTTAAATTCATCTATATCTTCTTGTTTTATTTTGGATCGTTTATCACGCTTAAAATGATATTCAAAAAATTGGGTACATGGTCCAGGAATATGTTGTAAATAACCGAACTGTCTCACAACACGAACAACCATGTGCCACCCACGATAAATTCCATAAATCAGTGGCACCTGTGCCATCCAGACACGTTGTCTCGACCGACACCACTCAGGCAATCCATTAATAACATCTTCCGAATAAGGTTGCCAAATAAACTATAAAAAAATAATTAAGTAAGATAATTATTAAAACAACATTGACAGAAAA : AAACATATTTGTATTTAAAATGAAATAAAATATGAATAGTTTAAGATACTAATAATATTAAATACCTGTTCATCAGTTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGCGCAGTTGAAGCCTCAAGTTGATTGGTCCTTAGAGGCTTTGACAATGGTTGCAGGGGAATAATT</gDNA_template>
            <first_frame> T  C  C  E  F  T  M  T  M  R  I  C  L  M  Y  Q  R  K  *  S  V  *  S  L  T  N  G  G  R  N  I  R  F  *  R  C  S  H  K  Y  C  V  *  L  N  S  S  I  S  S  C  F  I  L  D  R  L  S  R  L  K  *  Y  S  K  N  W  V  H  G  P  G  I  C  C  K  *  P  N  C  L  T  T  R  T  T  M  C  H  P  R  *  I  P  *  I  S  G  T  C  A  I  Q  T  R  C  L  D  R  H  H  S  G  N  P  L  I  T  S  S  E  *  G  C  Q  I  N  Y  K  K  I  I  K  *  D  N  Y  *  N  N  I  D  R  K  :  K  H  I  C  I  *  N  E  I  K  Y  E  *  F  K  I  L  I  I  L  N  T  C  S  S  V  R  L  S  S  T  S  L  I  T  P  I  T  V  R  A  S  F  *  *  F  L  R  R  V  H  L  R  A  S  A  V  E  A  S  S  *  L  V  L  R  G  F  D  N  G  C  R  G  I  I </first_frame>
            <second_frame>  H  V  V  N  L  Q  *  P  *  G  Y  A  S  C  T  N  E  S  N  L  F  D  H  L  Q  M  E  V  E  I  Y  D  F  D  V  V  P  I  N  I  V  C  S  *  I  H  L  Y  L  L  V  L  F  W  I  V  Y  H  A  *  N  D  I  Q  K  I  G  Y  M  V  Q  E  Y  V  V  N  N  R  T  V  S  Q  H  E  Q  P  C  A  T  H  D  K  F  H  K  S  V  A  P  V  P  S  R  H  V  V  S  T  D  T  T  Q  A  I  H  *  *  H  L  P  N  K  V  A  K  *  T  I  K  K  *  L  S  K  I  I  I  K  T  T  L  T  E  K :   N  I  F  V  F  K  M  K  *  N  M  N  S  L  R  Y  *  *  Y  *  I  P  V  H  Q  L  D  Y  L  V  H  P  *  S  H  R  L  Q  F  V  P  H  F  D  D  F  Y  V  A  S  I  Y  V  Q  A  Q  L  K  P  Q  V  D  W  S  L  E  A  L  T  M  V  A  G  E  *   </second_frame>
            <third_frame>   M  L  *  I  Y  N  D  H  E  D  M  P  H  V  P  T  K  V  I  C  L  I  T  Y  K  W  R  S  K  Y  T  I  L  T  L  F  P  *  I  L  C  V  V  K  F  I  Y  I  F  L  F  Y  F  G  S  F  I  T  L  K  M  I  F  K  K  L  G  T  W  S  R  N  M  L  *  I  T  E  L  S  H  N  T  N  N  H  V  P  P  T  I  N  S  I  N  Q  W  H  L  C  H  P  D  T  L  S  R  P  T  P  L  R  Q  S  I  N  N  I  F  R  I  R  L  P  N  K  L  *  K  N  N  *  V  R  *  L  L  K  Q  H  *  Q  K   : K  T  Y  L  Y  L  K  *  N  K  I  *  I  V  *  D  T  N  N  I  K  Y  L  F  I  S  *  I  I  *  Y  I  P  N  H  T  D  Y  S  S  C  L  I  L  M  I  S  T  S  R  P  F  T  C  K  R  S  *  S  L  K  L  I  G  P  *  R  L  *  Q  W  L  Q  G  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0009J11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="113465" PGL_stop="113865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113465" e_stop="113865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="113465" e_stop="113865" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113465" stop="113865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCATCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCGTGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTAAAGAAGGTGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACATG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  V  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  *  R  R  C  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  N  H  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  A  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   I  I  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  Q  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  R  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  K  K  V  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0009J11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="114318" PGL_stop="113981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114318" e_stop="113981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="114318" e_stop="113981" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114318" stop="113981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTAATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  N  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  *  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  I  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  N  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0009J11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="113991" PGL_stop="114471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113991" e_stop="114471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="113991" e_stop="114471" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113991" stop="114229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113992" stop="114471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATTAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTGCTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  L  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  I  Q  Y  P  C  F  V  L  T  P  A  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  I  G  S  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  *  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  F  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  T  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  I  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  C  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  H  R  I  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114255" stop="114449"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISIQYPCFVLTPAFMFSSCLIVECSKRAVIFDSTVTLASLHYIGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="115144" PGL_stop="115697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115144" e_stop="115697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="115144" e_stop="115697" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115144" stop="115697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCTACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTATCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCTAGTGTTTTCTACACCAGCACCTCAGGCTCCAGAGGTACCACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACCGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGCGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  Y  *  G  S  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  *  W  V  I  *  S  R  S  N  A  S  S  V  F  Y  T  S  T  S  G  S  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  R  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  A  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  I  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  L  V  F  S  T  P  A  P  Q  A  P  E  V  P  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  R  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  L  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  S  Q  R  *  *  I  R  C  L  L  I  L  V  G  Y  L  I  K  V  K  R  L  *  C  F  L  H  Q  H  L  R  L  Q  R  Y  H  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  P  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115145" stop="115696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPIPEMINQVLAYLSGLSDQGQTPLVFSTPAPQAPEVPHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVERQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="117255" PGL_stop="115148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117255" e_stop="116425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="117255" e_stop="116425" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117255" stop="116597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117186" stop="116425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117186" stop="116526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116783" stop="116453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACATGTTCTTTATGGTTACCTTGTTCAATTGCCGGTAGTCCATGCATATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCGACTATCACAGACTCACCCACCGTAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGTAAATGTAGAGCCAGAGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  M  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  F  G  I  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  W  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  C  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  T  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  V  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  A  E  D  T  Y  V  N  V  E  P  E  S  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  I  A  G  S  P  C  I  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  H  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  H  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  R  L  S  Q  T  H  P  P  *  *  K  H  E  *  V  Y  Q  V  I  R  N  V  N  L  D  H  *  Q  M  R  K  I  H  M  *  M  *  S  Q  S  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </second_frame>
            <third_frame>   N  A  R  K  R  I  H  V  L  Y  G  Y  L  V  Q  L  P  V  V  H  A  Y  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  I  W  Y  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  M  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  M  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  N  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  D  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  I  K  *  F  A  M  *  I  *  T  I  S  K  C  G  R  Y  I  C  K  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117048" stop="116803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAWNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMICTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116652" stop="116425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKFTKQDLYTFSTITDSPTVVETRIGISSNSQCKFRPLANAEDTYVNVEPESNNTKAMQSQTERLPVMTASD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117070" stop="116870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCGSHSIRGYRNGASTRFKINTEVNIPIWWHTRKICMEHIQKLTNHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117160" e_stop="116674"/>
            <exon e_start="115941" e_stop="115148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.940"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="117160" e_stop="116674" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="116673" i_stop="115942" i_length="732"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="115941" e_stop="115148" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117160" stop="116674"/>
              <exon start="115941" stop="115771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115867" stop="115148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115864" stop="115201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAAACCGGAGCACCCCAAGGAGATGCATTTGGTATAATGAAGCCTTTGTTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCATGGAACACATCCAAAAACTCACGAACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATATGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAACATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCT : TGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGTGGGATATACTTCTCCATAAACAAACCAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACGCTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCGGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTGGTACCTCTGGAGCCTGAGGTGCTGGTGTAGAAAACACTAGAGGCGTTTGACCTTGATCAGATAACCCACTAAGATAAGCAAGCACCTGATTTATCATCTCTGGGATAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTAGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> K  Q  N  R  S  T  P  R  R  C  I  W  Y  N  E  A  F  V  Q  Q  L  L  K  L  G  F  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  M  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  M  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  N  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F   : L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  W  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  G  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  W  Y  L  W  S  L  R  C  W  C  R  K  H  *  R  R  L  T  L  I  R  *  P  T  K  I  S  K  H  L  I  Y  H  L  W  D  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A </first_frame>
            <second_frame>  N  K  T  G  A  P  Q  G  D  A  F  G  I  M  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  W  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  C  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  T  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  :  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  P  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  R  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  G  T  S  G  A  *  G  A  G  V  E  N  T  R  G  V  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  I  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  H  G  T  H  P  K  T  H  E  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  H  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L :   G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  T  L  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  V  G  Y  T  S  P  *  T  N  Q  R  M  R  P  K  S  *  V  V  P  L  L  V  D  A  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  *  A  R  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  E  P  E  V  L  V  *  K  T  L  E  A  F  D  L  D  Q  I  T  H  *  D  K  Q  A  P  D  L  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  *  V  E  E  S  L  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116802" stop="116674"/>
                    <exon start="115941" stop="115657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGFVPGLANVTVLALQSKIATFGESQVIPRITSKSTISWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKPENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0009J11.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117048" stop="116803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAWNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMICTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 329 chains have been computed
$ 
$ memory statistics:
$ 363448 bytes spliced alignments in total
$ 125 spliced alignments have been stored
$ 2907 bytes was the average size of a spliced alignment
$ 33728 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1466 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 438 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-12 23:11:35
-->
