<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 02:33:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E706818" ref_strand="+" ref_description="SGN-E706818 [FA31AB01]">
      <seq>gatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagagaaaaaagaagaagaagaagacagcagcattcagaggttttcatctttctcagaaaacgaagaagatgaaacattggaagaagaagagaggttcaaatcaattattaagaaggtgatcgaagaaacactcttgttagaacacattgatagagaagatgcaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggggacggctaagcttgtaccggagacttgtttctggaagaatatgaagattgagccacatcgacgagctacatttggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="1050" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="750" g_stop="1" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E706818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="750" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGC-GGGGGGGACGGCTAAGCTT</genome_strand>
        <mrna_strand>GATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGGTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGGACGGCTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E319040" ref_strand="+" ref_description="SGN-E319040 [cTOB-14-F21]">
      <seq>aaacactcttgttagaacacattgatagagaagatgccaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="812" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="512" g_stop="12" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E319040" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="512" e_stop="12"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCTTGTTAGAACACATTGATAGAGAAGATG-CAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGA</genome_strand>
        <mrna_strand>AAACACTCTTGTTAGAACACATTGATAGAGAAGATGCCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E224613" ref_strand="+" ref_description="SGN-E224613 [cLEL-27-J4]">
      <seq>ttttttttttttttttctgattcaaggagttgatcaacaatggagtttacttctactgcagctactgctacaagtcccttcatctcactgtcttcttcatcttgttcctctgtttctggcgttaattcatcgcatttgagcttttcttcatccttactactatctgggacttctactgcttcttcattttctaccagatctacagaaacactagtttcctgtagtacattgcattcagggttttctgtatcttctacttctttcacctccgcattttctccgatttctttctcattagtttcttcccgagcaggtgattcccagaatcgattagcaatatccgccattttataggatcagatcgacatctcataagaagcaaagcatttttaggtggaatgcaaatgctaactctacctttctcttccttcatttcaacactctcatcgtcatgatccttgaactcaataccttcaacacatgccttcttgagcttctcatactactttgcattttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="319" stop="1441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="620" g_stop="1141" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E224613" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="620" e_stop="1141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTTTCTCTGATTCAAGGAGTTGATCAACAATGGAGTTTACTTCTACTGCAGCTACTGCTACAAGTCCCTTCATCTCACTGTCTTCTTCATCTTGTTCCTCTGTTTCTGGCGTTAATTCATCGCATTTGAGCTTTTCTTCATCCTTACTACTATCTGTGACTTCTACTGCTTCTTCATTTTCTACCAGATCTACAGAAACACTAGTTTCCTGTAGTACATTGCATTCAGTGTTTTCTGTATCTTCTACTTCTTTCACCTCCGCATTTTCTCCGATTTCTTTCTCATTAGTTTCTTCCCGAGCAGGTGATTCCCAGAATCGATTAGCAATATCCGCCATTTTCATAGGATCAGATCGACATCTCATAAGAAGCAAAGCATTTTTAGGTGGAATGCAAATGCTAACTCTACCTTTCTCTTCCTTCATTTCAACACTCTCATCGTCATGATCCTTGAACTCAATACCTTCAAACACATGCCTTCTTGAGCTTCTCATACTACTTTGCATTTTCTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTCTGATTCAAGGAGTTGATCAACAATGGAGTTTACTTCTACTGCAGCTACTGCTACAAGTCCCTTCATCTCACTGTCTTCTTCATCTTGTTCCTCTGTTTCTGGCGTTAATTCATCGCATTTGAGCTTTTCTTCATCCTTACTACTATCTGGGACTTCTACTGCTTCTTCATTTTCTACCAGATCTACAGAAACACTAGTTTCCTGTAGTACATTGCATTCAGGGTTTTCTGTATCTTCTACTTCTTTCACCTCCGCATTTTCTCCGATTTCTTTCTCATTAGTTTCTTCCCGAGCAGGTGATTCCCAGAATCGATTAGCAATATCCGCCATTTT-ATAGGATCAGATCGACATCTCATAAGAAGCAAAGCATTTTTAGGTGGAATGCAAATGCTAACTCTACCTTTCTCTTCCTTCATTTCAACACTCTCATCGTCATGATCCTTGAACTCAATACCTTC-AACACATGCCTTCTTGAGCTTCTCATACTACTTTGCATTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E224689" ref_strand="+" ref_description="SGN-E224689 [cLEL-27-J4]">
      <seq>ttttttttttttttttctgattcaaggagttgatcaacaatggagtttacttctactgcagctactgctacaagtcccttcatctcactgtcttcttcatcttgttcctctgtttctggcgttaattcatcgcatttgagcttttcttcatccttactactatctgtgacttctactgcttcttcattttctaccagatctacagaaacactagtttcctgtagtacattgcattcagtgttttctgtatcttctacttctttcacctccgcattttctccgatttctttctcattagtttcttcccgagcaggtgattcccagaatcgattagcaatatccgccattttcataggatcagatcgacatctcataagaagcaaagcatttttaggtggaatgcaaatgctaactctacctttctcttccttcatttcaacactctcatcgtcatgatccttgaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="319" stop="1390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="620" g_stop="1090" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E224689" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="620" e_stop="1090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTTTCTCTGATTCAAGGAGTTGATCAACAATGGAGTTTACTTCTACTGCAGCTACTGCTACAAGTCCCTTCATCTCACTGTCTTCTTCATCTTGTTCCTCTGTTTCTGGCGTTAATTCATCGCATTTGAGCTTTTCTTCATCCTTACTACTATCTGTGACTTCTACTGCTTCTTCATTTTCTACCAGATCTACAGAAACACTAGTTTCCTGTAGTACATTGCATTCAGTGTTTTCTGTATCTTCTACTTCTTTCACCTCCGCATTTTCTCCGATTTCTTTCTCATTAGTTTCTTCCCGAGCAGGTGATTCCCAGAATCGATTAGCAATATCCGCCATTTTCATAGGATCAGATCGACATCTCATAAGAAGCAAAGCATTTTTAGGTGGAATGCAAATGCTAACTCTACCTTTCTCTTCCTTCATTTCAACACTCTCATCGTCATGATCCTTGAACTCAATA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTCTGATTCAAGGAGTTGATCAACAATGGAGTTTACTTCTACTGCAGCTACTGCTACAAGTCCCTTCATCTCACTGTCTTCTTCATCTTGTTCCTCTGTTTCTGGCGTTAATTCATCGCATTTGAGCTTTTCTTCATCCTTACTACTATCTGTGACTTCTACTGCTTCTTCATTTTCTACCAGATCTACAGAAACACTAGTTTCCTGTAGTACATTGCATTCAGTGTTTTCTGTATCTTCTACTTCTTTCACCTCCGCATTTTCTCCGATTTCTTTCTCATTAGTTTCTTCCCGAGCAGGTGATTCCCAGAATCGATTAGCAATATCCGCCATTTTCATAGGATCAGATCGACATCTCATAAGAAGCAAAGCATTTTTAGGTGGAATGCAAATGCTAACTCTACCTTTCTCTTCCTTCATTTCAACACTCTCATCGTCATGATCCTTGAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E729336" ref_strand="+" ref_description="SGN-E729336 [LA20DA05]">
      <seq>aaaaaaacacagcttctctacacttacagacccccaaatccatggctacctacaacagcaataccaagaaaccattatcacattactgaaaactccttcatctcttcttttttgtatactttcttcttcaaatgaaactcaccaaatccatccttagtcctagccatgctcggcatgacccacctcttactcttcccacttctctcagtcggaagcttaaagctaatggcagtattaaaggcggacaatccccagctacgttttctactaccaccggaaagaaacgagggtcgagttttgataacccggaaccttcgtctccgaaggtgacttgtattggtcaggtgaaaatgaagacgaagaagaaagttaggcaaacacggaatttgtctaatagaaggagtgatataagtttcaggaagttggaagaagaaaaaaggggagttttgattcagaatcagaggagttctagtgtgcatttgcaggcgcaagatcaatgtgcggtggcgcatagaaatcagagatgggtacatttgccagtaacgatatatgaagctttgagagagtttagctgtttgtttccatgtcggtcttcgtgtttttcgaatgagaaaggaaaacaacaagataaagttaatggatctagagatgttgataataataatgggcagaggagatgtgaggatgttgttgctagatggctagttgcattacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="2237" stop="921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1937" g_stop="1221" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E729336" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1937" e_stop="1221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</genome_strand>
        <mrna_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTTCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E400182" ref_strand="+" ref_description="SGN-E400182 [cSTC-5-D1]">
      <seq>gtgaaaactcttcatctgttttattgtagcctttctacttcttcttcttcaatgaaactaaccaaatccatgctcagtcctagccatgcccggcatgagccacctctaactcttcccacttccctcagtcggaggcttaaagctaatggcagtattaaaggtggacaatccccagctacttttcctactaccaccggaaagaaacgagggtcgggttttgataacccggaaccttcgtctccgaaggtgacttgtattggtcaggtgaaaatgaagacaaagaagaaagttaggcaaacacggaatttgtctaatagaaggagtgatataagtttcaggaagttggaagaagaaaggggagttttgattcagaatcagaggagttctagtgtgcatttacaggcgcaagatcaatgtgctgcggcggtggcggtggcgcatagaaatcagagatgggtacatttgccagtgacgatatatgaagctttgagagagtttagctgtttgtttccatgtcggtcttcgtgtttttcgaatgagaaaggaaaacaagaggataaagttaatggatctagagaagttgataataataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="2127" stop="969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1818" g_stop="1269" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="598" r_length="558" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E400182" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1818" e_stop="1269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAA-----T------GT-GCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGC</genome_strand>
        <mrna_strand>CTTCTTCTTC-AATGAAACTAACCAAATCCATGCTCAGTCCTAGCCATGCCCGGCATGAGCCACCTCTAACTCTTCCCACTTCCCTCAGTCGGAGGCTTAAAGCTAATGGCAGTATTAAAGGTGGACAATCCCCAGCTACTTTTCCTACTACCACCGGAAAGAAACGAGGGTCGGGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACAAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAG---AAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTACAGGCGCAAGATCAATGTGCTGCGGCGGTGGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTGACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAAGAGGATAAAGTTAATGGATCTAGAGAAGTTGATAATAATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E356236" ref_strand="+" ref_description="SGN-E356236 [cTOS-20-D4]">
      <seq>cttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaatttggttgcaattttcaaatttacttactggtgaattaagggtgattgctaaatatccaagtatgtgtataatttgtctatttctaaaattgattagatctaaatttaacaaaagtaaattatatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="6185" stop="5088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5885" g_stop="5391" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="511"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E356236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5885" e_stop="5391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</genome_strand>
        <mrna_strand>CTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E261780" ref_strand="-" ref_description="SGN-E261780 [cLEG-61-E5]">
      <seq>agggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="8210" stop="5218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7910" g_stop="7800" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6081" g_stop="5519" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="674" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="698"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E261780" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7910" e_stop="7800"/>
          <exon e_start="6081" e_stop="5519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGA</genome_strand>
        <mrna_strand>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E317071" ref_strand="+" ref_description="SGN-E317071 [cTOA-27-M16]">
      <seq>cggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggcattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaatgcattgcgaatggtcgtactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="8619" stop="5278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8319" g_stop="8286" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8138" g_stop="8019" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="154" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8018" i_stop="7909" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7908" g_stop="7800" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="263" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6081" g_stop="5578" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="766" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E317071" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8319" e_stop="8286"/>
          <exon e_start="8138" e_stop="8019"/>
          <exon e_start="7908" e_stop="7800"/>
          <exon e_start="6081" e_stop="5578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATG</genome_strand>
        <mrna_strand>CGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGG-AAATGCATTGCGAATGGTCGTACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E421567" ref_strand="-" ref_description="SGN-E421567 [STM-33-G23]">
      <seq>agtataagtcgcattttagcagccggtgctgagcaggccgttgactataccattgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggtattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcacggactagctattggtcttcctatggcagcagccatcttgctgaagaaacaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaagtcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtacgtggattcagtgcacaaggctataatgtcccatgcaatctggtattgcactgaatacttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaatttacactctgttggaatatataggattcagaagaaaactgtgcaacctgtaaattctcgggacattctcattttttttcttttctatatctatccgtgattgtttctatgtctcgtctcgtctttaaccggtagggaagttgaactaaaaaaaaaaatagatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="8642" stop="5377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8342" g_stop="8286" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8138" g_stop="8019" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="177" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8018" i_stop="7909" i_length="110">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7908" g_stop="7800" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="286" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6081" g_stop="5652" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="720" r_length="434" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="770"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E421567" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421567" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8342" e_stop="8286"/>
          <exon e_start="8138" e_stop="8019"/>
          <exon e_start="7908" e_stop="7800"/>
          <exon e_start="6081" e_stop="5652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATA-G-----GAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTAT</genome_strand>
        <mrna_strand>AGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCGTTGACTATACCATTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGTATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCACGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAACAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAAGTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTACGTGGATTCAGTGCACAAGGCTATAATGTCCCATGCAATCTGGTATTGCACTGAATACTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAATTTACACTCTGTTGGAATATATAGGATTCAGAAGAAAACTGTGCAACCTGTAAATTCTCGGGACATTCTC-ATTTTTTTTCTTTTC-TATATCTATCCGTGATTGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E437279" ref_strand="+" ref_description="SGN-E437279 [cSTA-3-C18]">
      <seq>gtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaggatgaacttgctccaaagccgggatcactttcacatgcagaagccagtgctatcccttttgctgcgctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgcagtggctgcaggctgccatgtttctactacatgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccgttgactataccattgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="10890" stop="7793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="255" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="329" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8445" g_stop="8286" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="489" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8138" g_stop="8093" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="535" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E437279" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8286"/>
          <exon e_start="8138" e_stop="8093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATA</genome_strand>
        <mrna_strand>ATGCGATCAGGATATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAGGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGCA............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCGCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCAGTGGCTGCAGGCTGCCATGTTTCTACTACATGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCGTTGACTATACCATTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E555359" ref_strand="+" ref_description="SGN-E555359 [cTSC-2-D1]">
      <seq>acactctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12620" stop="7795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12320" g_stop="12007" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8286" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="776" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8138" g_stop="8095" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="820" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E555359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12320" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8286"/>
          <exon e_start="8138" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGA</genome_strand>
        <mrna_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E698155" ref_strand="+" ref_description="SGN-E698155 [FA05BG04]">
      <seq>cccttaatttgctgctcaatttctttgcaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12571" stop="8050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12271" g_stop="12007" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="492" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="566" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8350" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="662" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E698155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12271" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGG</genome_strand>
        <mrna_strand>CCCTTAATTTGCTGCTCAATTTCTTTGC-AAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E316034" ref_strand="+" ref_description="SGN-E316034 [cTOA-23-G20]">
      <seq>aacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccatagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatatggtattggtcatangtggangaggagcagtacgtttctctgcaattcancttgctgtggctgcaggctgccatgtttctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12598" stop="8057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12298" g_stop="12007" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="520" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="594" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8357" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="683" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E316034" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12298" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTA</genome_strand>
        <mrna_strand>AACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCATAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGGTATTGGTCATANGTGGANGAGGAGCAGTACGTTTCTCTGCAATTCANCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E408168" ref_strand="+" ref_description="SGN-E408168 [PPI-10-E18]">
      <seq>cgaggccagacaccgttcgctttcactcttccccttttttgcacgtacaccttcttttacctgaacccttgaaccatatgcatcccattttccccaaatcacctgaatttgctgctcaatttctttgcaaaacaatgatccgattgatatctcggaggattgagattggtacctggcgatggaggcatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttgccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaattttcgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcatctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaggatgaacttgctccaaagcccgggatcactttcacatgcggaagccagtgctatcccttttgctgcgctaactgcttggcgtgcgctaaaaagtactgccagaataagagagggcatagggtattggtcataggtggaggaagagcagtaggtttctctgcaattagctttgcagtggctgcaggctgccatgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12657" stop="8062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12308" g_stop="12007" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="366" r_length="305" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="595" r_length="229" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="669" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8362" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="752" r_length="83" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E408168" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12308" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCATTCAACAATATGCATC-CATTTTCCCCAAATCA-CTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTA-CTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAG-CCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTC</genome_strand>
        <mrna_strand>TGAACCCTTGAACCATATGCATCCCATTTTCCCCAAATCACCTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACCTGGCGATGGAGGCATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTCGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCATCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAGGATGAACTTGCTCCAAAGCCCGGGATCACTTTCACATGCG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCGCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CATAGGGTATTGGTCATAGGTGGAGGAAGAGCAGTAGGTTTCTCTGCAATTAGCTTTGCAGTGGCTGCAGGCTGCCATGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E481997" ref_strand="+" ref_description="SGN-E481997 [cSTD-20-O14]">
      <seq>aaatcactgaatttgctgctcaatttctttgcaaacaatgatccgattgatatctcggaggattgagattggtactggcgatggaggcatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttgccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaattttcgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcatctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaggatgaacttgctccaaagccgggatcactttcacatgcggaagccagtgctatcccttttgctgcgctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcatangtggaggaggagcagtaggtttctctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12575" stop="8095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12275" g_stop="12007" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="496" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="570" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8395" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="621" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E481997" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12275" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAAT</genome_strand>
        <mrna_strand>AAATCACTGAATTTGCTGCTCAATTTCTTTGCAA-ACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACTGGCGATGGAGGCATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTCGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCATCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAGGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGCG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCGCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATANGTGGAGGAGGAGCAGTAGGTTTCTCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E236599" ref_strand="+" ref_description="SGN-E236599 [cLED-13-H17]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12557" stop="9678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12257" g_stop="12007" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="479" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="536" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E236599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12257" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E421566" ref_strand="+" ref_description="SGN-E421566 [STM-33-G23]">
      <seq>cagacacgttcgcttcactctccccttttttgcatgtacactcttttactgaacattgaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgatatctcggaggattgagattggtactggcgatggaggcatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttgccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaattttcgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcatctgttggaaattctgtcaagtcacttacagttgggcaggaagtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcngaggatgaacttgctccaagccggnatcactttcacatgcggaagccagtgctatcccttttgctgcgctaactgcttggcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12657" stop="9692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12357" g_stop="12007" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="577" r_length="227" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9992" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="620" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E421566" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12357" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACACGTCCTCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTG</genome_strand>
        <mrna_strand>CAGACACGTTCGCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTTACTGAA-CATTGAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACTGGCGATGGAGGCATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTCGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCATCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAAGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCNGAGGATGAACTTGCTCC-AAGCCGGNATCACTTTCACATGCG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCGCTAACTGCTTGGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E575871" ref_strand="+" ref_description="SGN-E575871 [35562]">
      <seq>tatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgatatctcggaggattgagattggtactggcgatggaggaatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttaccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaggatgaacttggtccaaagccgggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12593" stop="10061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12293" g_stop="12007" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10361" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="505" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E575871" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12293" e_stop="12007"/>
          <exon e_start="10578" e_stop="10361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACT</genome_strand>
        <mrna_strand>TATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACTGGCGATGGAGGAATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTACCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAGGATGAACTTGGTCCAAAGCCGGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E253521" ref_strand="+" ref_description="SGN-E253521 [cLEG-24-I6]">
      <seq>tctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaagttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12616" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12316" g_stop="12007" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10393" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="496" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E253521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12316" e_stop="12007"/>
          <exon e_start="10578" e_stop="10393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCG</genome_strand>
        <mrna_strand>TCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAAGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E247609" ref_strand="+" ref_description="SGN-E247609 [cLEF-42-P21]">
      <seq>ccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtacagctgtgtagctgtcgcaattcctagggccgaagatgctggaatttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12577" stop="10098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12277" g_stop="12007" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10398" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="452" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E247609" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12277" e_stop="12007"/>
          <exon e_start="10578" e_stop="10398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTC</genome_strand>
        <mrna_strand>CCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTACAGCTGTGTAGCTGTCGCAATTCCTAGGGCCGAAGATGCTGGAATTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E476684" ref_strand="+" ref_description="SGN-E476684 [cSTB-45-L17]">
      <seq>cacgttcgcttcactctccccatttttgcatgtacactcttttactgaacattgaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgatatctcggaggattgagattggtactggcgatggaggaatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttgccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12653" stop="10101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12353" g_stop="12007" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10401" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="524" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E476684" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12353" e_stop="12007"/>
          <exon e_start="10578" e_stop="10401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTCCTCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTA</genome_strand>
        <mrna_strand>CACGTTCGCTTCACTCTCCCCATTTTTGCATGTACACTCTTTTACTGAA-CATTGAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACTGGCGATGGAGGAATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E233039" ref_strand="+" ref_description="SGN-E233039 [cLED-6-G21]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaagggtacttatactgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12557" stop="10105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12257" g_stop="12007" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10405" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="425" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E233039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12257" e_stop="12007"/>
          <exon e_start="10578" e_stop="10405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTAT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAAGGGTACTTATACTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E235931" ref_strand="+" ref_description="SGN-E235931 [cLED-16-H24]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12557" stop="10226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12257" g_stop="12007" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10526" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E235931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12257" e_stop="12007"/>
          <exon e_start="10578" e_stop="10526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E368680" ref_strand="+" ref_description="SGN-E368680 [TUS-22-N6]">
      <seq>ttttttttttttttttttttttttttttttttttttttttttttaaaaaacaaggaactgcaatttcattaagtagactatcaccacttttcaactacaatcacagaaactccttggtccaatattttttcacatgatacaagcttttttgtagctagaactttaatcaaaatcaaataaaagccctactggggaacgaatgttgggagcaaaaaaaatccaaaattgtaatcacaactttaaaaaagcgccaacaggaaggcttaggatatatgaatttagtacaaaagcttggcagttttgcagggaaaagccacaaaagagatgatgtgttcctcctttcactagcaaaaccagtcttggttggatccatgtcatgatttttgaaactgaataataagggctggcgagcacaaagttctggcaccccatgatagtgtgggtgtgaaaaagagagagaggatctaattataattcttcctttgagcatttcacatccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="6051" stop="15603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13372" g_stop="13415" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.614"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13416" i_stop="14844" i_length="1429">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14845" g_stop="15303" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="503" r_length="459" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E368680" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13372" e_stop="13415"/>
          <exon e_start="14845" e_stop="15303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTAATCTTTGTCAATTTATATGAATTATTCTCTTTATGTGTTTTACTACTCCGTCAACCGCATACGACCTCCAAGAATAATAAAAGGAATAAAAGTCGAACAATAACTACTTAGATTTTTAAATAATTTAACATACATTAGTTCATAATAATAACACTTATGTTCAAATTATGTCAAATACTGTTATAATAACCAAAAGAAATCAAATAAGGCATTTAATGGTGTATTTGGTAGGCAGGAAAATAAAAAATGTTTTTGTTTAATTGGTCAATTTTCTTTAAAAAATATTTATTTATAGTAGAAAAACATATTTTTTTAACGATCGTGGTGTTCAAATCAACTTTCATGTAGATCGATTAATTTTATGGGATATCTATTACCTTCCATCAATAACAAGTATATGGTAACCATGATTACCAGGTCTAGGACAGATGAGAAGAATCACCTAACATTTTTTGTTTACGGTCAACACATATTCCGTAAAAATGATAAAAATGACTAACAGAACATACTCCCCCACCCTCCATAGCCCTCCTCCCCACATGTTCCAAAATCCAATCAATATTTTCTACTTACTCACGAAACATAAATAAAAATCACATTTTTTGAAGAAAAACGTATTCTTAGGTCTCAAAGAAATGGTCATGTATGACAAACAAATTCAAAAAATCACATTTTTTGAAGAAAAACATATTCTTAGAGTAGATAGTCTAAAAAAATGGTCATATATGACAAATAATTATTTTTTTTAAGAAAAAAAAGGAAAAATAATGATACATTATAGATCCAATCAAACTACACCAACAAAATTTTTTCTTAGTTTATATATAATATTTACAAAAATAATCAATTCTTGATCAAAGATGGGATTTCTTTTACTCTTCATAATCTTTAATTCTTTATTTTCAACAATGGCCACTAATTTGGAAACTTACATTGTTCAAGTTGAATCTCCAAATAATCAAATTTCTACTCGTAGTACATTATCAACAATGAAATTTAGATAGTTGGTACCATTCATTTTTGCCAACAACTATAGCCAAGATACATCGTATGGTTTACGCGTACTATAATGTGATTAAAGGTTTTGCAGTTGGATGGAGAATTGAAAGAAATGGAGATGAAAAAAAGGATTCATTTCAGCGCGACCTCAAAGGGTGTTGTCTTTGCACACTACTCAAACATTGGATTTTGGAGAGATTCTAACGTTTACTCAAATAGTCAATCGATCATCAGGCACTGTTGAGGTTGAAGGATTCTTGAAATGGAAATCTACCAAGTACTCTGTTAGGAGTCCAATTGCAGCTTTGTTGACTCGAATCTTTTAGAGAAAAAAAATTGATTCCTTTGACAAGACAGAAGGAAACCTATTCAATATGTAATTATGACCACATACTTCTTAAATAATTGTCTGATGATTTTTTTGGTATAGCAAGCATAAGATCAACTATAGGACAGAAGTAGAGATATAACAATGATCTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGTAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAAGCCCTACTGAGGAACGAATGTTGTGAGCAAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAAGGAACTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGAAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTTTTTTGTAGCTAGAACTTTAATCAAAATCAAATAAAAGCCCTACTGGGGAACGAATGTTGGGAGCAAAAAAAATCCAAAATTGTAATCACAACTTTAAAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATTTAGTACAAAAGCTTGGCAGTTTTGCAGGGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAAAACCAGTCTTGGTTGGATCCATGTCATGATTTTTGAAACTGAATAATAAGGGCTGGCGAGCACAAAGTTCTGGCACCCCATGATAGTGTGGGTGTGAAAAAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E244586" ref_strand="+" ref_description="SGN-E244586 [cLED-38-N13]">
      <seq>tctctctcacacacacactatcatggcgtgccagaactttgtgctcgccagaccttattattcagtttcaagaatcatgacatggatccaaccaagactggttctgctagtgaaaggaggaacacatcatctcttttgtggcttttcactgcaaaactgccaagcttttgtactagattcatatatcctaagccttcctgttggcgcttttctagagttgtgattacaattctggatttttttttgctcacaacattcgttcctcagtagggcttttatttgattttgattgaagttctagctacagaagagcttgtatcatgtgaaaaaatattggaccaaggagttactgtgattgtagttgaaaagtggtgatagtctacttaatgaaattgcagatcattgtttttnnnnaaaaaaaannaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="15554" stop="14547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15254" g_stop="14849" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E244586" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15254" e_stop="14849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGA-TTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</genome_strand>
        <mrna_strand>TCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGATTTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E550513" ref_strand="+" ref_description="SGN-E550513 [TUS-6-A22]">
      <seq>gagactatcaccacttttcactacatcacagtaactccttggtccttcattttttcacatgatacaagctcttctgtagctagaacttcaatcaaaatcaaataaaacccctactgaggaacgaatgttgtgagcaaaaaaaaatccagaattgtaatcacaactctagaaaagcgccaacaggaaggcttaggatatatgaatctagtacaaaagcttggcagttttgcagtgaaaagccacaaaagagatgatgtgttcctcctttcactagcagaaccagtcttggttggatccatgtcatgattcttgaaactgaataataaggtctggcgagcacaaagttctggcacgccatgatagtgtgtgtgtgagagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="14575" stop="15555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14874" g_stop="15255" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E550513" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14874" e_stop="15255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACTATCACCACTTTTCAACTACAATCACAGTAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAAGCCCTACTGAGGAACGAATGTTGTGAGC-AAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAG</genome_strand>
        <mrna_strand>GAGACTATCACCACTTTTC-ACTAC-ATCACAGTAACTCCTTGGTCCTTCATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAACCCCTACTGAGGAACGAATGTTGTGAGCAAAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E224381" ref_strand="-" ref_description="SGN-E224381 [cLEL-27-F2]">
      <seq>caaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgttanccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="16537" stop="15146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="154" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15895" g_stop="15817" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="233" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15569" g_stop="15443" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="360" r_length="127" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E224381" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15817"/>
          <exon e_start="15569" e_stop="15443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTTANCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E224881" ref_strand="-" ref_description="SGN-E224881 [cLEL-27-F2]">
      <seq>aaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaaggatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="16539" stop="15146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="97" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15895" g_stop="15817" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15569" g_stop="15443" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="368" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E224881" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15817"/>
          <exon e_start="15569" e_stop="15443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGGATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E368681" ref_strand="+" ref_description="SGN-E368681 [TUS-22-N6]">
      <seq>tattgtaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttaccctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="19815" stop="15153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19515" g_stop="19429" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="172" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17565" g_stop="17447" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="291" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="380" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="445" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15895" g_stop="15817" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="524" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15569" g_stop="15453" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="642" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E368681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19515" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17565" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15817"/>
          <exon e_start="15569" e_stop="15453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTA-CCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAA</genome_strand>
        <mrna_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E275746" ref_strand="+" ref_description="SGN-E275746 [cLEN-18-E11]">
      <seq>aatcctaattccatattatttaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgagaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtgttagacctcatcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="19895" stop="15524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19595" g_stop="19577" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19507" g_stop="19429" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="98" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="183" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18031" i_stop="17556" i_length="476">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17555" g_stop="17447" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="446" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15895" g_stop="15824" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="518" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E275746" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19595" e_stop="19577"/>
          <exon e_start="19507" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17555" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCA</genome_strand>
        <mrna_strand>AATCCTAATTCCATATTAT.....................................................................TTAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGAGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTGTTAGACCTCATCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E723355" ref_strand="+" ref_description="SGN-E723355 [FC20BA05]">
      <seq>cgatgaggggcattttaggtccttcaacccttcacatgttgggagcttaaagcggatgttaaagtaattgagccaccacgcggagaggaagacaaaaatggcggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcaaaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcaatcgtgcactacggaaccttgctactgaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="20192" stop="15552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19727" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19649" g_stop="19577" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="239" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19507" g_stop="19429" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="318" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="403" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17565" g_stop="17447" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15895" g_stop="15852" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="720" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E723355" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19727"/>
          <exon e_start="19649" e_stop="19577"/>
          <exon e_start="19507" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17565" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCC</genome_strand>
        <mrna_strand>CGATGAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAAAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAATCGTGCACTACGGAACCTTGCTACTGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E345742" ref_strand="+" ref_description="SGN-E345742 [cTOF-18-L14]">
      <seq>cggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaattaagcattttctaagggaaggacgcagtcgtgcactacgggaccttgctactgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="20091" stop="15553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19791" g_stop="19727" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19649" g_stop="19577" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="138" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19507" g_stop="19429" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="217" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18031" i_stop="17556" i_length="476">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17555" g_stop="17447" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="564" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15895" g_stop="15853" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="607" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E345742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19791" e_stop="19727"/>
          <exon e_start="19649" e_stop="19577"/>
          <exon e_start="19507" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17555" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTC</genome_strand>
        <mrna_strand>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAAT-TAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGGACCTTGCTACTGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E240931" ref_strand="+" ref_description="SGN-E240931 [cLED-24-E10]">
      <seq>tattgtaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="19815" stop="15715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19515" g_stop="19429" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="172" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17565" g_stop="17447" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="291" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="380" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16075" g_stop="16015" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="441" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E240931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19515" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17565" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTC</genome_strand>
        <mrna_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="24941" stop="23896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24641" g_stop="24196" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24641" e_stop="24196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAA-TTTTTCTAACGTTTGGTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="24942" stop="24047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24642" g_stop="24321" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24642" e_stop="24321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="24942" stop="24047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24642" g_stop="24352" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24642" e_stop="24352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E321913" ref_strand="+" ref_description="SGN-E321913 [cTOB-29-C13]">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacaagttctcacaacatctttggaatgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32076" stop="35065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32376" g_stop="32532" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34766" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="677" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E321913" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32376" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTC</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E322635" ref_strand="+" ref_description="SGN-E322635 [cTOB-26-O7]">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacggggcacttgatcggctttcatacagtctcacacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32076" stop="35055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32376" g_stop="32532" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34755" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="664" r_length="424" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E322635" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32376" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGC-TTCATACAAGTTCTCACAACATCTTT</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGGCACTTGATCGGCTTTCATAC-AG-TCTCAC-ACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E452031" ref_strand="+" ref_description="SGN-E452031 [cSTS-15-M2]">
      <seq>cacttttccattgaaacctctcttcgattatccctttgcttttttccttctttgatctatcgatcgtctgatcaacctctaattggtgttttccactgagcatttttgtgccttttatgtttaaaggcgaaaatcgaggaagaagttgatatttggatgataaaaaggcatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacggtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttatgggagcatagcgactttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagaccatcaagagggtaccttaacatatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcatcaaatcattacaatccttnacatggctgttccatccgcttctggagatttccctattccagtaaatcatgggccacatgatcggcttcatacaagctctcacaacatccttggaatgaattcagattacggaaggaacaatcattacatggacgatgtcagaggctcatttaagagaaagaatgctgaaggaattcctgcaaatcttcaatatcatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32147" stop="35164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32447" g_stop="32532" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="167" r_length="82" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34864" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="706" r_length="539" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E452031" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32447" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGC-T--TCAAATCATTACAATCCTT-ACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATG</genome_strand>
        <mrna_strand>CACTTTTCCATTGAAACCTCTCTTCGATTATCCCTTTG-CTTTTTTCCTTCTTTGATCTATCGATCGTCTGATCAACCTCTAATTG................................................................................................................................................................................................................................................................GTG-TTTTCCACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCGAAAATCGAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACGGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTATGGGAGCATAGCGACTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGACCATCAAGAGGGTACCTTAACATATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCATCAAATCATTACAATCCTTNACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCATGGGCCACATGATCGGCTTCATACAAGCTCTCACAACATCCTTGGAATGAATTCAGATTACGGAAGGAACAATCATTACATGGACGATGTCAGAGGCTCATTTAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E316068" ref_strand="+" ref_description="SGN-E316068 [cTOA-23-B9]">
      <seq>ttccattgaaacctctcttcattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacnagttctcacaacatctttggaatgaatttcagatacggaagggacaatcattatatggacgatgtcagaggctcatataagagaaagatgctgaaggaattnctgcaaatcttcatatcatcatgctttggcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32152" stop="35174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32452" g_stop="32532" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34874" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="706" r_length="543" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E316068" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32452" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAA-TTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</genome_strand>
        <mrna_strand>TTCCATTGAAACCTCTCTTC-ATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACNAGTTCTCACAACATCTTTGGAATGAATTTCAGA-TACGGAAGGGACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAG-ATGCTGAAGGAATTNCTGCAAATCTTC-ATATCATCATGCTTTGGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E316066" ref_strand="+" ref_description="SGN-E316066 [cTOA-23-B5]">
      <seq>ttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcaccaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtaataccagctcccgtaaatgctggcaatatatatttgcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32152" stop="34841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32452" g_stop="32532" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="164" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34541" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="376" r_length="212" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E316066" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32452" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCA</genome_strand>
        <mrna_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCACCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAATACCAGCTCCCGTAAATGCTGGCAATATATATTTGCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E475417" ref_strand="+" ref_description="SGN-E475417 [cSTB-38-P16]">
      <seq>aaacctctcttcaattatccctttgctttttccttctttgatctatcgatcgtctgatcaacctctaattggtgctttccactgagcatttttgtgccttttatgtttaaaggagacaatcgaggaagaagttgatatttggatgataaaaaggcatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacggtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttatgggagcatagcgactttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagaccatcaagagggtaccttaacatatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcccaacctagctatttctgctccatcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcatgggccacatgatcagcttcatacaagctctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32160" stop="35046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32460" g_stop="32532" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="153" r_length="82" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.788" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34746" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="573" r_length="420" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E475417" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32460" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCT---TCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCAC</genome_strand>
        <mrna_strand>AAACCTCTCTTCAATTATCCCTTTG--CTTTTTCCTTCTTTGATCTATCGATCGTCTGATCAACCTCTAATTG................................................................................................................................................................................................................................................................GTG-CTTTCCACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGAGACAATCGAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACGGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTATGGGAGCATAGCGACTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGACCATCAAGAGGGTACCTTAACATATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCCAACCTAGCTATTTCTGCTCCATCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCATGGGCCACATGATCAGCTTCATACAAGCTCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E548642" ref_strand="+" ref_description="SGN-E548642 [TUS-63-B9]">
      <seq>ggaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttgggtaaggtttgagtactctctacccttcccagtttgtttattatcgttattgttgttctcatgtaatttctgggtagtgttttttcatgagcatcaaacatttgaatgaaagctgtgtaatttgtcttgcctcctctggtaaccaaacatgacataagttaatctcgaagtcttaatgagggttggtgttgtttttaaaaaacacacaactaaaatcaagattttatttggtgtgttcccaacttgaaaatttgcatccggggtttgtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32670" stop="34033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32970" g_stop="33733" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E548642" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32970" e_stop="33733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCC-GGGTTTGTCAATCT</genome_strand>
        <mrna_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTTCCCAGTTTGTTTATT-ATCGTTATTGTTGTTCTCATGTAATTTCTGGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAGCTGTGTAATTTGTCTTGCCTCCTCTGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTTAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGGTTTGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E300990" ref_strand="+" ref_description="SGN-E300990 [cLEW-8-P2]">
      <seq>gaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32671" stop="33761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32971" g_stop="33460" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E300990" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32971" e_stop="33460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGG</genome_strand>
        <mrna_strand>GAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E277702" ref_strand="+" ref_description="SGN-E277702 [cLEL-5-M1]">
      <seq>gcacgagtctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgacttgctgtccgtacatattagtagttgtagtattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32733" stop="33560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33026" g_stop="33260" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E277702" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33026" e_stop="33260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCT</genome_strand>
        <mrna_strand>GCACGAGTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGACTTGCTGTCCGTACATATTAGTAGTTGTAGTATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E426113" ref_strand="+" ref_description="SGN-E426113 [STM-46-G1]">
      <seq>gggatgtgtagatgctggaaacatgggcttttgacccatcatatgacatccagcaatggaggtttgactagttttctgcatccacccattcctcaagggcacccaggacttcatcatctgccacctaatattcaaggaatgagaggccagcctatcaccttccctccgcaaatgacagcatcatcctcacacagacacctaccaaataattcgtccaatatcaccactaacctaatgctaggcgttgtagaggcagggcccagatatatgccctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="35282" stop="36159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35582" g_stop="35859" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E426113" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35582" e_stop="35859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGCGTAGATGCTGGAAACATGGGTTTGCGAGGTTATCATATGACATCCAGCAATGGAGGTTTGACTAGTTTTCCGCATCCACCCATTCCTCAAGGGCTCCCAGGACTTCATCATCTGCCACCTAATATTCAAGGAATGAGAGGCCAGCCTATCTCCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACGAACCTAATGCAAGGCGTTGTAGAGGCAGGACCCAGATATATGCCCTCCC</genome_strand>
        <mrna_strand>GGGATGTGTAGATGCTGGAAACATGGGCTTTTGA-CCCATCATATGACATCCAGCAATGGAGGTTTGACTAGTTTTCTGCATCCACCCATTCCTCAAGGGCACCCAGGACTTCATCATCTGCCACCTAATATTCAAGGAATGAGAGGCCAGCCTATCACCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACTAACCTAATGCTAGGCGTTGTAGAGGCAGGGCCCAGATATATGCCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E456107" ref_strand="+" ref_description="SGN-E456107 [cSTS-28-F17]">
      <seq>ggggccttgcgaggttatcatatgacatccagcaatggaggtttgactagttttctgcatccacccattcctcaagggcacccaggacttcatcatctgccacctaatattcaaggaatgagaggccagcctatcaccttccctccgcaaatgacagcatcatcctcacacagacacctaccaaataattcgtccaatatcaccactaacctaatgcaaggcgttgtagaggcagggcccagatatatgccctccctaccaactggctttgggttgtatagacctcatcgaagggctatctgcttgaaagaaatactagacatcagaaccttcctaacatgagagttctgccagaagatggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacagagatatgcgtttagacgtagatcacatgtcctacgaggagcttcttgcactgggggagcagattggcaatgtaacaactggattgtcagatgaaataatcgttaaccgtttgaaaacaagatcatttttgccccccgttattccttgcaccctggaaactgctgcatgttttggatcacgaagctgattttctgtgtcatatgccagactgattacaacaagcaagaaactataggaactcttgattgcgggcatgaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="35306" stop="38215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35604" g_stop="35963" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36093" g_stop="36191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="458" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36369" g_stop="36536" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="628" r_length="170" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37861" g_stop="37915" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="683" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E456107" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35604" e_stop="35963"/>
          <exon e_start="36093" e_stop="36191"/>
          <exon e_start="36369" e_stop="36536"/>
          <exon e_start="37861" e_stop="37915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTTTGCGAGGTTATCATATGACATCCAGCAATGGAGGTTTGACTAGTTTTCCGCATCCACCCATTCCTCAAGGGCTCCCAGGACTTCATCATCTGCCACCTAATATTCAAGGAATGAGAGGCCAGCCTATCTCCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACGAACCTAATGCAAGGCGTTGTAGAGGCAGGACCCAGATATATGCCCTCCCTTCCAACTGGCTTTGGGTTGTATCGACCTCATCGAAGGGCTATCGTGCTTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATG-TTTGGATCACGAAGCTGA-TTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATC</genome_strand>
        <mrna_strand>GGGGCCTTGCGAGGTTATCATATGACATCCAGCAATGGAGGTTTGACTAGTTTTCTGCATCCACCCATTCCTCAAGGGCACCCAGGACTTCATCATCTGCCACCTAATATTCAAGGAATGAGAGGCCAGCCTATCACCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACTAACCTAATGCAAGGCGTTGTAGAGGCAGGGCCCAGATATATGCCCTCCCTACCAACTGGCTTTGGGTTGTATAGACCTCATCGAAGGGCTATC-TGCTTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAT.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGTTTGAAAACAAGATCATTTTTGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTTGGATCACGAAGCTGATTTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCATGAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E410900" ref_strand="+" ref_description="SGN-E410900 [PPI-18-K22]">
      <seq>ggccagcctatcaccttccctccgcaaatgacagcatcatcctcacgcagacacctaccaaataattcgtccaatatcaccactaacctaatgcaaggcgttgtacaggcacggcccagatatatgccctccctaccaactggctttgggttgtatagacctcatcgaagggctatcgtgcttgaaagaaatactatacatcagaaccttcctaacatgatagttctgccacaagatggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacaaagatatgcgtttagacgtacatcacatgacctacgaggagcttcttgcactgggggagcatattggcaatgtaacaactggattgtcagatgaaataatcgttaaccggttgaaaacaagatcatttttgccccccgttattccttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccagactgattacaacaagctagagactataggaactcttgattgcgggcatgaatatcacgcggagagcgtatagaagtggttggttgtgaagaaacttagcctatctgcgatccaccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="35427" stop="38281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35727" g_stop="35963" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36093" g_stop="36191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="336" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36369" g_stop="36536" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="504" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37861" g_stop="37981" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="623" r_length="119" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E410900" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35727" e_stop="35963"/>
          <exon e_start="36093" e_stop="36191"/>
          <exon e_start="36369" e_stop="36536"/>
          <exon e_start="37861" e_stop="37981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGCCTATCTCCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACGAACCTAATGCAAGGCGTTGTAGAGGCAGGACCCAGATATATGCCCTCCCTTCCAACTGGCTTTGGGTTGTATCGACCTCATCGAAGGGCTATCGTGCTTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGAT</genome_strand>
        <mrna_strand>GGCCAGCCTATCACCTTCCCTCCGCAAATGACAGCATCATCCTCACGCAGACACCTACCAAATAATTCGTCCAATATCACCACTAACCTAATGCAAGGCGTTGTACAGGCACGGCCCAGATATATGCCCTCCCTACCAACTGGCTTTGGGTTGTATAGACCTCATCGAAGGGCTATCGTGCTTGAAAGAAATACTATACATCAGAACCTTCCTAACATGATAGTTCTGCCACAAGAT.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAAAGATATGCGTTTAGACGTACATCACATGACCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCATATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGGTTGAAAACAAGATCATTTTTGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTACAACAAGCTAGAGACTATAGGAACTCTTGATTGCGGGCATGAATATCACGCGGAGAGCGTATAGAAGTGGTTGGTTGTGAAGAA-ACTTAGCCTATCTGC-GATCCACCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E321247" ref_strand="+" ref_description="SGN-E321247 [cTOB-23-G7]">
      <seq>ttgaaagaaatactagacatcagaaccttcctaacatgagagttctgccagaagacggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacagagatatgcgtttagacgtagatcacatgtcctacgaggagcttcttgcactgggggagcagattggcaatgtaacaactggattgtcagatgaaataatcgttaaccgcttgaaaacaagatcattttcgccccccgttattccttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccagactgactacaacaagcaagaaactataggaactcttgattgcgggcacgaatatcatgcagaatgcgtaaagaagtggttggttgtgaagaacacttgccctatctgcaaatccaccggattgtcaatagaaagaaaagatttgtgaaaacagggagttggttggttggtggatgaataattataagagtgggacattttgntctcttgttaaatatttgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="35608" stop="38386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35908" g_stop="35963" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36093" g_stop="36191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36369" g_stop="36536" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="323" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37861" g_stop="38086" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="549" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E321247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35908" e_stop="35963"/>
          <exon e_start="36093" e_stop="36191"/>
          <exon e_start="36369" e_stop="36536"/>
          <exon e_start="37861" e_stop="38086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</genome_strand>
        <mrna_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGNTCTCTTGTTAAATATTTGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E424248" ref_strand="+" ref_description="SGN-E424248 [STM-43-E6]">
      <seq>cttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccaggtattaacactaacttatactttgagtaggattaggtttgcctgtgacttttgcagggatcactctggggatggctctacttcagtctccttttctcccgtccatttttattttaggtgctgattaagtacactaaccaagacaaatcagatgggtgtaagctcttgctcaaacaatcgcattagtaggttttagtttgttactccctctgtttcagtttgtttgccttttctttttagtccgtttaaaaaagaatgcctcttccctttcttgataattcttttattctaactttccacatgacatatttaagaacacnagattaaagggaanttttggtacattttacatatctttagcttaagaccacaagttttcaaagtcttctttattttcttaaactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="36175" stop="37237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36475" g_stop="36937" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E424248" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36475" e_stop="36937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCA-TTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCA-TTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTC-TT-TTTTCTTAAACTCC</genome_strand>
        <mrna_strand>CTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAACTTATACTTTGAGTAGGATTAGGTTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTTTATTTTAGGTGCTGATTAAGTACACTAACCAAGACAAATCAGATGGGTGTAAGCTCTTGCTCAAACAATCGCATTAGTAGGTTTTAGTTTGTTACTCCCTCTGTTTCAGTTTGTTTGCCTTTTCTTTTTAGTCCGTTTAAAAAAGAATGCCTCTTCCCTTTCTTGATAATTCTTTTATTCTAACTTTCCACATGACATATTTAAGAACACNAGATTAAAGGGAANTTTTGGTACATTTTACATATCTTTAGCTTAAGACCACAAGTTTTCAAAGTCTTCTTTATTTTCTTAAACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E585748" ref_strand="-" ref_description="SGN-E585748 [68211]">
      <seq>tccaatctcctttctcgattctccaggaacgagttcaatcttgaatcgaagtctactattggcgttgaattcgctacccgtagtattaaggtcgatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccatactgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggtggtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtctaagctaaaaaaaacaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgattattctcagttttgaatatcttaggacatattccacctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttactattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42264" stop="6051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41964" g_stop="41822" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39166" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="758" r_length="615" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39165" i_stop="37347" i_length="1819">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.070" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37346" g_stop="37328" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="777" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E585748" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41964" e_stop="41822"/>
          <exon e_start="39790" e_stop="39166"/>
          <exon e_start="37346" e_stop="37328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAACATGATTTGTATATAATCGTCGCAACTTGTTTAGAACTGAAGCTTAGTTGTTACTATTATGTTTGACATGTAGACTTGCAAGTGGTTTTGGTTTTTTTCTGAAGAATAATGTTTCTTAGGATCTTTCCTTTCAAGTTTGTTTTTTAAAAAGAAATGACACCTCTTTAATTTCAATTTTTTTCACATGTTTTCAAGAGTTCTTTTTAGTTTTTAAAGATATCATATAGAAATATACTTTTTAACGTGGCCTTATTTATGTGTATCTATTTGTTTAACTTTATATAAATTTAAGTTTCTACTTATGTACACTCAAAGTTGAAAGGCATAAATTTGAGTTAAAACAAAGTTAAAGGACATATATATCATCACTTTACTTTGTAACTCGTAAAATAAATTTGCTTAATTTGGTGTAAACACCTAAATATTTTCCCAAGTAGTAATAGTATACCAACAGTACTATAAAAAGATACAGTAAATAATGCCCTTTTGCTTTATATCAATCTTATATCTATGTCATCCAATTTTGATATGCTAAAAATAGACACTTAAACACTATCATAAAATTGAATAAGTAAACATTTCCATCCTATATGACAAATCTTACGTGATATGCCATTTAGGATGTGTGCATCTCACACAGTTCATGTAAGACACATAATACTTTAAGTCCTTATGCACAATCAAAGTTAAAGAACACACGTACTAACTCATGTCAAGTTAAAGAACACGGTAAATGTACGGTCAAGCTTCAGAAAATATCACCAACTAGTTATAACATCTGCAGGACAAAGATGGCACATTAATCCAGAAAGAATACAGTACAATCAGGCGTGGTCGAACAAGATAATTTCAGATGTCTATACAAAATTCACAATACATGCACATGGTTCCAACAAAATTAAGAGGTCTGTACATATTCAGGTGACAAAAATTAAGGTCACCAAGTTATATGCTAACATCTAGCCAAAGTATATACAAAATATATATATATAATTATACAGGTCTCCTCTTGTTAGAGAACAAATATTTAACAAGAGAACAAAATGTCCCACTCTTATAATTATTCATCCACCAACCAACCAACTCCCTGTTTTCACAAATCTTTTCTTTCTATTGACAATCCGGTGGATTTGCAGATAGGGCAAGTGTTCTTCACAACCAACCACTTCTTTACGCATTCTGCATGATATTCGTGCCCGCAATCAAGAGTTCCTATAGTTTCTTGCTTGTTGTAGTCAGTCTGAAATTGAAGGCAAAATATACATTGCAAGCCATCAGAGATGCAAGGATAACTAAAAGAAAGAAAACAAGGAAAAGTAGCTCCATAGGAAAGCACAGCAAGGCATTAATGGCGCATAATTGGAAAATAATCATGCATTACAAATCCAGACAATATAAATTACGATAGACAGCATTCTATGTGAACATAAAAATAAGAAGATGGACAGAAACATCTTAGTAGCCGAGGCAATACTTTGCCTGGTGGAAATCCAGAAATAATTGACGGCATCCTACTGTGATGATTGTTAAGCTTATAAAGATTGAGGAAGGAGTACAAAGCATCCTCCTCAGTTTATTTCGAAACAATGCAATAGTAAACTGTTAGTCAATAATTCAGCTGACAGACTAAACTATGCTATTGCTTAAATAGATACAACCACCCAAGAGAATGCATGGTTCTTATACTTAGATGTCAACCTATTCTTTCTCCATAACATTTTATACCGTCACTTCTAGAGTTACAACAAATATAGGAAAAGAAAAAGAAATCAA</genome_strand>
        <mrna_strand>TCCAATCTCCTTTCTCGATTCTCCAGGAACGAGTTCAATCTTGAATCGAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGTATTAAGGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACTGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAAACAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGATTATTCTCAGTTTTGAATATCTTAGGACATATTCCACCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGA--TTTACTATTATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E580645" ref_strand="+" ref_description="SGN-E580645 [5888]">
      <seq>cccactcttataattattcatccaccaactaactccctgtattcacaaatattttctttctatcgacaatccggtggatttgcagatagggcaagtgttcttcacaaccaaccacttctttacgcactccgcgtgatattcatgcccgcaatcaagagttcctatagtttcttgcttgttgtaatcagtctgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="38352" stop="37553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38053" g_stop="37853" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E580645" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38053" e_stop="37853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTCTTATAATTATTCATCCACCAACCAACCAACTCCCTGTTTTCACAAATCTTTTCTTTCTATTGACAATCCGGTGGATTTGCAGATAGGGCAAGTGTTCTTCACAACCAACCACTTCTTTACGCATTCTGCATGATATTCGTGCCCGCAATCAAGAGTTCCTATAGTTTCTTGCTTGTTGTAGTCAGTCTGAAATT</genome_strand>
        <mrna_strand>CCCACTCTTATAATTATTCAT---CC-ACCAACTAACTCCCTGTATTCACAAATATTTTCTTTCTATCGACAATCCGGTGGATTTGCAGATAGGGCAAGTGTTCTTCACAACCAACCACTTCTTTACGCACTCCGCGTGATATTCATGCCCGCAATCAAGAGTTCCTATAGTTTCTTGCTTGTTGTAATCAGTCTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E587046" ref_strand="+" ref_description="SGN-E587046 [78159]">
      <seq>cctcgtgccgaattcggcacgaggcttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggtggtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtctaagctaaaaaaaacaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgattattctcagttttgaatatcttaggacatattccacctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttactattatttaaatacttttacattatatttttatttggtatgtttatggcatgagatgagtttaaatggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39862" stop="38823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39562" g_stop="39093" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="484" r_length="460" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E587046" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39562" e_stop="39093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAACATGATTT</genome_strand>
        <mrna_strand>CTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAAACAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGATTATTCTCAGTTTTGAATATCTTAGGACATATTCCACCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGA--TTTACTATTATTTAAATACTTTTACATTATATTTTTATTTGGTATGTTTATGGCATGAGATGAGTTTAAATGGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E240449" ref_strand="-" ref_description="SGN-E240449 [cLED-21-E23]">
      <seq>gggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtaaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcatcttatgagtttaaataaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39785" stop="38799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39485" g_stop="39100" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="397"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E240449" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39485" e_stop="39100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</genome_strand>
        <mrna_strand>GGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTAAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E588415" ref_strand="+" ref_description="SGN-E588415 [41967]">
      <seq>catgccataaacataccaaataaaaatataatgtaaaagtatataaataatagtaaaaatcttttcaaagagtcaaaagactagcaaaatagggtacaaactaaaggtaagttaatgaaacaatacagaggaggaatatttcctaagatattcaaaactgagaatactcaatgcaactataggagaagccatttgaaagcttaacttcactgatttcttgatttttttagcttagacagagcagcaaccaacttttttcacagctgaaacatcatccttgccaacatttatagtctgcccctttggcaatgcagtaggatcgtccccaacttcgagtgctttccgacagacaaccctgtatatctcggtcaatacttctgtaaacgcattctcaacattcaaggattcaagtgctgaagtctccatatagaaggtactctctctttcagcaaaggccttggcgtcctctgttgaaacagcacgcaagtgacgtaagtcagccttgttcccaacgagcattatgactatattttggtcggtatggtctcgaagttcttttaaccatctctcaacattttccaatgtgacatgtcgagtgatatcgtacacaaccaatgcaccgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="38823" stop="40056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39122" g_stop="39756" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E588415" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39122" e_stop="39756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCATAAACATACAAAATAATAATATAATGTAAAAGTATATAAATAATAGTAAAACTCTTTTACAAAGAGTCAAAAGACTAGCAAAATAGGGTACAAAGTACAAACTAAAGGTAAGTTAATGAAACAATACAGAGGTGGAATAATTCCTAAGATATTCAAAACTGAGAATACTCAATGCAACTATAGGAGAAGCCATTTGAAAGTTTAACTTCACCGATTTCTTGATTTTTTTAGCTTACACAGAGCAGCAACCAACTTTTTTCACAGCTGAAACATCATCCTTGCCAACATTTATAGTTTGCCCCTTCGGCAACGCAGTAGGATCATCCCCAACTTCGAGTGCTTTCCGACAGACCACCCTGTATATCTCTGTCAGTACTTCTGTAAACGCATTCTCAACGTTCAAGGATTCAAGTGCTGAAGTCTCCATATAGAAGGTACTCTCTCTTTCAGCAAAGGCCTTGGCATCCTCTGTTGAAACAGCACGCAAGTGACGTAAGTCGGCCTTGTTCCCAACGAGCATTATGACTATATTTTGGTCGGTATGGTCTCGAAGTTCTTTTAACCATCTCTCAACATTTTCAAATGTGACATGTCGAGTGATATCGTAGACAACTAATGCACCGACAGC</genome_strand>
        <mrna_strand>CATGCCATAAACATACCAAATAAAAATATAATGTAAAAGTATATAAATAATAGTAAAAATCTTTT-CAAAGAGTCAAAAGACTAGCAAAATAGGGT----A---CAAACTAAAGGTAAGTTAATGAAACAATACAGAGGAGGAATATTTCCTAAGATATTCAAAACTGAGAATACTCAATGCAACTATAGGAGAAGCCATTTGAAAGCTTAACTTCACTGATTTCTTGATTTTTTTAGCTTAGACAGAGCAGCAACCAACTTTTTTCACAGCTGAAACATCATCCTTGCCAACATTTATAGTCTGCCCCTTTGGCAATGCAGTAGGATCGTCCCCAACTTCGAGTGCTTTCCGACAGACAACCCTGTATATCTCGGTCAATACTTCTGTAAACGCATTCTCAACATTCAAGGATTCAAGTGCTGAAGTCTCCATATAGAAGGTACTCTCTCTTTCAGCAAAGGCCTTGGCGTCCTCTGTTGAAACAGCACGCAAGTGACGTAAGTCAGCCTTGTTCCCAACGAGCATTATGACTATATTTTGGTCGGTATGGTCTCGAAGTTCTTTTAACCATCTCTCAACATTTTCCAATGTGACATGTCGAGTGATATCGTACACAACCAATGCACCGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E226645" ref_strand="-" ref_description="SGN-E226645 [cLEL-26-B7]">
      <seq>acttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39849" stop="38824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39549" g_stop="39125" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="442"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E226645" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226645" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39549" e_stop="39125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</genome_strand>
        <mrna_strand>ACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E226792" ref_strand="-" ref_description="SGN-E226792 [cLEL-26-B7]">
      <seq>gtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39804" stop="38824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39504" g_stop="39125" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E226792" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226792" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39504" e_stop="39125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</genome_strand>
        <mrna_strand>GTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E593231" ref_strand="+" ref_description="SGN-E593231 [36457]">
      <seq>ggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtctaagctaaaaaaatcaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttttactattatttatatacttttacattatatttttatttggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39784" stop="38835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39484" g_stop="39136" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="359"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E593231" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39484" e_stop="39136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGT</genome_strand>
        <mrna_strand>GGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGATTTTTACTATTATTTATATACTTTTACATTATATTTTTATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E581524" ref_strand="+" ref_description="SGN-E581524 [6712]">
      <seq>gcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttgaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtctaagctaaaaaaatcaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttttactattatttatatacttttacattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="40047" stop="38848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39747" g_stop="39144" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E581524" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39747" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTAT</genome_strand>
        <mrna_strand>GCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTGAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGATTTTTACTATTATTTATATACTTTTACATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E369301" ref_strand="-" ref_description="SGN-E369301 [TUS-25-A10]">
      <seq>aacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42237" stop="38845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41937" g_stop="41822" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39146" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="761" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E369301" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41937" e_stop="41822"/>
          <exon e_start="39790" e_stop="39146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</genome_strand>
        <mrna_strand>AACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E616524" ref_strand="+" ref_description="SGN-E616524 [89991]">
      <seq>gctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgcaaaaaagttggttgctgctctgtctaagctaaaaaaatcaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttttactattatttatatacttttacattatatttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39909" stop="38842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39609" g_stop="39146" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E616524" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39609" e_stop="39146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTG-AAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</genome_strand>
        <mrna_strand>GCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGCAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGATTTTTACTATTATTTATATACTTTTACATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E597541" ref_strand="+" ref_description="SGN-E597541 [67411]">
      <seq>gttggttgctgctctgtctaagctaaaaaaatcaagaaatcagtgaagttaagcttgcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaaagatttttactattatttatatacttttacattatatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="39681" stop="38842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39381" g_stop="39146" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="232" polyA_stop="241"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E597541" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39381" e_stop="39146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</genome_strand>
        <mrna_strand>GTTGGTTGCTGCTCTGTCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTGCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG-AAAAGATTTTTACTATTATTTATATACTTTTACATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E581523" ref_strand="+" ref_description="SGN-E581523 [6712]">
      <seq>ttacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtcctaagctaaaaaaatcaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttatttgtaccctattttgctagtcttttgactcttgaaaagattttactattatttatatacttttacattaccaacacacaaacaaacgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="40079" stop="38850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39779" g_stop="39151" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E581523" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39779" e_stop="39151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGT-GTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATT</genome_strand>
        <mrna_strand>TTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACC------TT-TA-TTTGTACCCTATTTTGCTAGTCTTTTGACTC-TTG-AAAAGA-TTTTACTATTATTTATATACTTTTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E560991" ref_strand="-" ref_description="SGN-E560991 [20731]">
      <seq>tctccagaaacgagttcaatctgtggaatcccaagtctactattggcgtttgaattcgctacccgtagcaattaaggtcgatgataagatcgtcaaggcccagaatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtctaagctaaaaaaatcaagaaatcagtgaagttaagctttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaaatattcctcctctgtattgtttcattaacttacctttagtttgtaccctattttgctagtcttttgactctttgaaagatttttactattatttatatacttttacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42245" stop="38850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41945" g_stop="41822" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39153" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="759" r_length="629" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E560991" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41945" e_stop="41822"/>
          <exon e_start="39790" e_stop="39153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGAAACGAGTTCAATCT-T-GAAT-CAAAGTCTACTATTGGTG-TTGAATTTGCTACCCGTAGC-ATTAAGGTAGATGATAAGATCGTTAAGGCTCAG-ATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACA</genome_strand>
        <mrna_strand>TCTCCAGAAACGAGTTCAATCTGTGGAATCCCAAGTCTACTATTGGCGTTTGAATTCGCTACCCGTAGCAATTAAGGTCGATGATAAGATCGTCAAGGCCCAGAATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTCTAAGCTAAAAAAATCAAGAAATCAGTGAAGTTAAGCTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAAATATTCCTCCTCTGTATTGTTTCATTAACTTACCTTTA----G---TTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTG--AAAGATTTTTACTATTATTTATATACTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E703003" ref_strand="+" ref_description="SGN-E703003 [FA20BB10]">
      <seq>ctctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42402" stop="38859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42102" g_stop="41822" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39159" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="913" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E703003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42102" e_stop="41822"/>
          <exon e_start="39790" e_stop="39159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACT</genome_strand>
        <mrna_strand>CTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E701613" ref_strand="+" ref_description="SGN-E701613 [FA16BH04]">
      <seq>atttgttttccttcttagaactctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaacttttcaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaagaattattccacctctgtattgtttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42422" stop="38943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42122" g_stop="41822" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39243" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="849" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E701613" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42122" e_stop="41822"/>
          <exon e_start="39790" e_stop="39243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATT</genome_strand>
        <mrna_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTTCAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAAGAATTATTCCACCTCTGTATTGTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E619431" ref_strand="+" ref_description="SGN-E619431 [70120]">
      <seq>tgtcacaactatccccttaagtaaaccaaatagttaatttgttgaattaatcgcagatggcaggtggatatagagctgaggatgattacgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccaatctcctttctcgattctccagaaacgagttcaatcttgaatccaagtctactattggcgttgaattcgctacccgtagcattaaggtcgatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggccaggatgatgtttcagctgtgaaaaaaagttggttgctgctctgtctaaagtaaaaaaatcaagaatcagtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42401" stop="39033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42103" g_stop="41822" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39333" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="738" r_length="458" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E619431" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42103" e_stop="41822"/>
          <exon e_start="39790" e_stop="39333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTG-AAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGT</genome_strand>
        <mrna_strand>TGTCACAACTATCCCCTTAAGTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGGCAGGTGGATATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCCAATCTCCTTTCTCGATTCTCCAGAAACGAGTTCAATCTTGAATCCAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCCAGGATGATGTTTCAGCTGTGAAAAAAAGTTGGTTGCTGCTCTGTCTAAAGTAAAAAAATCAAG-AATCAGTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E454424" ref_strand="+" ref_description="SGN-E454424 [cSTS-23-C16]">
      <seq>gagagaactagtctcgagttttttttcttagagctctcaactatccccttaagtaaaccaaatagttaatttgttgaattaatcgcagatggcaggtggatatagagctgaggatgattacgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccaatctcctttctcgattctccagaaacgagttcaatcttgaatccaagtctactattggcgttgaattcgctacccgtagcattaaggtcgatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggnttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaagggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggntgctgctctgtctaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42418" stop="39059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42118" g_stop="41822" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="312" r_length="295" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39359" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="744" r_length="432" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E454424" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42118" e_stop="41822"/>
          <exon e_start="39790" e_stop="39359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGG-TGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGC</genome_strand>
        <mrna_strand>GTTTTTTTTCTTAGAGCTCTCAACTATCCCCTTAAGTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGGCAGGTGGATATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCCAATCTCCTTTCTCGATTCTCCAGAAACGAGTTCAATCTTGAATCCAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGNTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCC-AAAGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGNTGCTGCTCTGTCTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E465092" ref_strand="+" ref_description="SGN-E465092 [cPRO-20-E21]">
      <seq>caactatccccttaagtaaaccaaatagttaatttgttgaattaatcgcagatggcaggtggatatagagctgaggatgattacgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccaatctcctttctcgattctccagaaacgagttcaatcttgaatccaagtctactattggcgttgaattcgctacccgtagcattaaggtcgatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggttgtctgtcggaaagcactcgaagttggggacgatcctactgcattgccaaaggggcagactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttgggtgctgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42398" stop="39066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42098" g_stop="41822" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39366" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="700" r_length="425" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E465092" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42098" e_stop="41822"/>
          <exon e_start="39790" e_stop="39366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTG</genome_strand>
        <mrna_strand>CAACTATCCCCTTAAGTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGGCAGGTGGATATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCCAATCTCCTTTCTCGATTCTCCAGAAACGAGTTCAATCTTGAATCCAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTTGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCATTGCCAAAGGGGCAGACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGGTGCTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E369302" ref_strand="+" ref_description="SGN-E369302 [TUS-25-A10]">
      <seq>actctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42403" stop="39122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42103" g_stop="41822" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39422" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="651" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E369302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42103" e_stop="41822"/>
          <exon e_start="39790" e_stop="39422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAAC</genome_strand>
        <mrna_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E318291" ref_strand="+" ref_description="SGN-E318291 [cTOA-29-N5]">
      <seq>tgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcatatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactccaagttggggatgatcctactgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42337" stop="39138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42037" g_stop="41822" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39438" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="569" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E318291" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42037" e_stop="41822"/>
          <exon e_start="39790" e_stop="39438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGT</genome_strand>
        <mrna_strand>TGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCATATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCCAAGTTGGGGATGATCCTACTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E469187" ref_strand="+" ref_description="SGN-E469187 [cSTB-10-D6]">
      <seq>atccccttaagtaaaccaaatagttaatttgttgaattaatcgcagatggcaggtggatatagagctgaggatgattaccgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccaatctcctttctcgattctccaggaacgagttcaatcttgaatccaagtctactattggcgttgaattcgctacccgtagcattaaggtagatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaatgttgagaatgcgtttacagaagtattgaccgagatatacagggtggtctgtcggaaagcactcgaagttggggacgatcctactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42393" stop="39140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42093" g_stop="41822" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39439" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="623" r_length="352" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E469187" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42093" e_stop="41822"/>
          <exon e_start="39790" e_stop="39439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTA-CGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCG</genome_strand>
        <mrna_strand>ATCCCCTTAAGTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGGCAGGTGGATATAGAGCTGAGGATGATTACCGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCCAATCTCCTTTCTCGATTCTCCAGGAACGAGTTCAATCTTGAATCCAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAATGTTGAGAATGCGTTTACAGAAGTATTGACCGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGACGATCCTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E583547" ref_strand="+" ref_description="SGN-E583547 [9368]">
      <seq>ttagagctctcaactatccccttaagtaaaccaaatagttaatttgttgaattaatcgcagatggcaggtggatatagagctgaggatgattacgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccaatctcctttctcgattctccagaaacgagttcaatcttgaatccaagtctactattggcgttgaattcgctacccgtagcattaaggtcgatgataagatcgtcaaggcccagatttgggatactgctggacaagaaaggtaccgtgcaattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggctgacttacgtcacttgcgtgctgtttcaacagaggacgccaaggcctttgctgaaagagagagtacttctatatggagacttcagcacttgaatcttgaatgttgagaatgcgntacagaagtattgaccgagatatacagggttgtcctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42408" stop="39174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42108" g_stop="41822" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39474" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="600" r_length="315" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E583547" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42108" e_stop="41822"/>
          <exon e_start="39790" e_stop="39474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGT-CTGTC</genome_strand>
        <mrna_strand>TTAGAGCTCTCAACTATCCCCTTAAGTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGGCAGGTGGATATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCCAATCTCCTTTCTCGATTCTCCAGAAACGAGTTCAATCTTGAATCCAAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTCGATGATAAGATCGTCAAGGCCCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCTGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGACGCCAAGGCCTTTGCTGAAAGAGAGAGTA-CTTCTATATGGAGACTTCAGCACTTGAAT-CTTGAATGTTGAGAATGCG-NTACAGAAGTATTGACCGAGATATACAGGGTTGTCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E247130" ref_strand="+" ref_description="SGN-E247130 [cLEF-46-E4]">
      <seq>actctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42403" stop="39198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42103" g_stop="41822" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39498" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="575" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E247130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42103" e_stop="41822"/>
          <exon e_start="39790" e_stop="39498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGA</genome_strand>
        <mrna_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E336896" ref_strand="+" ref_description="SGN-E336896 [cTOE-5-L5]">
      <seq>gcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42349" stop="39308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42049" g_stop="41822" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39608" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="411" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E336896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42049" e_stop="41822"/>
          <exon e_start="39790" e_stop="39608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGC</genome_strand>
        <mrna_strand>GCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E581101" ref_strand="+" ref_description="SGN-E581101 [6344]">
      <seq>gtaaaccaaatagttaatttgttgaattaatcgcagatgtcatgtggatatagagctgagatgattacgattatctgttcaagttggtgctaattggagattctggtgtcggaaaatccatctcctttctcggattctccagaaacgagttcaatcttgaatccgagtctactattggcgttgaattcgctacccgtagcattaaggtcgatgataagatcgtcaggcccagatttgggatactgctgggacaagaaaggtaccgtgcattacaagtgcatactacagaggggctgtcggtgcattggttgtgtacgatatcactcgacatgtcacatttggaaatgttgagagatggttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42383" stop="39386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42083" g_stop="41822" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39686" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="363" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E581101" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42083" e_stop="41822"/>
          <exon e_start="39790" e_stop="39686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTC-GATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCT-GGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAA</genome_strand>
        <mrna_strand>GTAAACC-AAATAGTT-AATTTGTTGAATTAATCGCAGATGTCATGTGGATATAGAGCTGA-GATGATTACGATTATCTGTTCAAGTTGGTGCTAATTGGAGATTCTGGTGTCGGAAAATCC-ATCTCCTTTCTCGGATTCTCCAGAAACGAGTTCAATCTTGAATCCGAGTCTACTATTGGCGTTGAATTCGCTACCCGTAGCATTAAGGTCGATGATAAGATCG-TCAGGCCCAGATTTGGGATACTGCTGGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTGC-ATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTGGTTGTGTACGATATCACTCGACATGTCACATTTGGAAATGTTGAGAGATGGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E687811" ref_strand="+" ref_description="SGN-E687811 [T3_tus_81_C13]">
      <seq>tgatgataatgtgccgggagaaacgcaaaatgacaattttcagccacaagacttttacatgaattcttctgaaagaagtgaccgtgaaggttcttctatggatcagagtggtgatgatccctatcattccatattctataatcgtgatgaaaatttagaggatgttctcaatatgcatcgggccctgcgtaatgacaactataagaatgcaataaagtatttacgacatgctctgcattccagtccaccagtactagaggcttttcatcctttaatacagatgctgctgctcggggatcaggtgaaggaggctcttgatgaggtggaaaaatttactccatacaccaacacatcatttcagttgagatctctgtcctgataacacttccaattgttatgttcaaaaggttgaaagctactatcttggagcattttgacagcggtaactatgtcaaactttcagcaatccatgaggaaaatttggagaaagatcctgcttgtagccactcattggggagactcatcatcttgcatagaaggggagagtatagcactgaaaagctgatggaaatgatagctttgcatttggatgctactcatgcaaattgtgacacatggaaggagttagcttgttgcttcctgaggctttttncatgtgaagaagattgcatgtctgtgtgctccaacggtgaagatagtgagaagcaaaaattcacaaaatggattagtcagattccaaaaatatttagcgattatgagtctagcaagtcatggaggctccgttgcagatggtggctgactcattacttcagccagactatactcacttcagatattgcttcaggtgactgggaactgctgactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="56921" stop="47096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56621" g_stop="56476" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56475" i_stop="55377" i_length="1099">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55376" g_stop="55243" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="280" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53874" g_stop="53789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="366" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53788" i_stop="53379" i_length="410">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53378" g_stop="53338" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="407" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53337" i_stop="52787" i_length="551">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52786" g_stop="52653" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="541" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52652" i_stop="50026" i_length="2627">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50025" g_stop="49723" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="844" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49722" i_stop="47418" i_length="2305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47417" g_stop="47396" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="866" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E687811" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56621" e_stop="56476"/>
          <exon e_start="55376" e_stop="55243"/>
          <exon e_start="53874" e_stop="53789"/>
          <exon e_start="53378" e_stop="53338"/>
          <exon e_start="52786" e_stop="52653"/>
          <exon e_start="50025" e_stop="49723"/>
          <exon e_start="47417" e_stop="47396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTGGTGAGTGTTGCTCATGGCTTAAAGATTTGTCTATGCGGCGGCATAGTCATACATGAAATTCAAAAGGGTAGCAAATTTTGCTTTTACTTGCAGAGAACCTTAGAGCCTGGTTCATGGCAATTGGATTTGGACTTGAGGTACAATATGTAGTATGGGCTGAAAAAACAAGTTGACTTTTCTTTTTCCCTTCTCTCTTATGAAGGGGTCAGACGAGACCCTTTATCTCTGTGTCTTAATTGAAGTTGGCACGATTGATGACTGATTATTGTTGATTTCAAGAATGAACATGTCTATCATTCGAATAATTACCTTTAGTTTGTACAGGTCATTCTGTAATGTGAATTTAGCCTCTAATTTTTCTTTGGGTTTAGGTATGTTACAAGTGTTGGCATAGGGTATACTTTAGCCAAAAAATAGTTACATATAATTACATAGGAATGTGGTTATAGGTACGTATTGTCTGGGTCTTCTTTAGACATTAAAATGAATGGCATCTTCCAAGAACTCTCCAGATGAGTGGGAGGAGGAGCAGCTGACTAATGACAACAGCAGCCAAGCTTCCCTCCCTCATTTTGGGTTGTTGCAAAATCATACCTGCAAGGAACATGGGAAAAAGTGTGGACTTTTAAAATTTTCAATACTTTGGATGGTGACAAAATGGGCCTGCCCTGGATTATATACTTCAGTTTCCTAAAGGGATGATGTGAAGATGAGGAAGTTAGTACTTTAGGAGAGAACATTCTCTTGGAATATTCTCAAAAGGATGAAAAGGCAGTTGACATGAGGTGTATAGAATCTGGAATTTCTAAGTCCTTCAACCCTTGTGAAGGTGGATATTGTGCATTCGACATGGTTTGGGTTTTTTTTAAGCTCCAATTGAGATACATTATGTTCTTTATTTTTGGATAACCACGGTGTCCATGGCCATCTTACGCATAACTCGACTAATTCCAAAAAATACTGTCACCACCCAGCTCCCAACAATAATATAATATATGTCATGTTCTTCTTGCTGATTAGATTTAATTATGATATTTCTTACTCTATTCAAATGTAGGTCTTCCATTGTGGTTATTGCCTTTACAATTGCCTTCCTCAGATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAGGTAATTGCTTATGTCCAAGAAAGAATTCAGACAGAATTTTTCAAATTTATTCAGAACTGTATTTTATAGATGTCGTAGGAAGTTCATGCATGTTCACATTATCCCCAACTCTCGGAAGAGGACTCCGTAACCTCATATTGGTTGGTTATATGTATCTGTTTGTGTATCTCTATTTTCTGCATGCTGATCATTGTGTTAGCTTCATCAGCTAAAACCAATAGAGGAGAACTCCTTTTTTATTTGAAACCTAGCCCTGGGGCTCATAATGATTCAAGTTGTTGAACACAGCTTGAACTTGAAATTAAGCTGGTATATTAAACGCACCACCTCAAATTAGTTTCATCTCAAGTTGTTTGTGTTCAATAATGTTAAAAATTCTAATATTTATGAATGTTTTGTAAATATATACTTCAAGAATATATTTGCAAATATTCCATCTTATTTATTCGAGTTGGTATCTAGATACTCTATTTACATTGACAATTTGTATAGAAGGTTAAACTTCATCAGTTAGCACCGCCAGGCTCAAAATGTAAGTGGGTGCTTCAGTTGAATGGCGGGTGAAATGTTGACCAAATCCTCCGCGACACGAGTTCGATTCTCATTTTCTACAATTTTTTCTTATTCTGATGATGTTTTTCTTTTTTGAAACTGGGAATGTTGTTATTTTCTTATTCGTCTTGCTTTCCTTTTTACTCCTCTTTTCCATTTTTACTTTTCTATCCTTTTTCCAGACAATACAATCTCTTCCAGAAAGAAGAACACTATCTCTTTTTACTTCCCCTCCTGAAAAAACTTAATCTTCCTCCAAAACAGAAAGAATTTTTTTTTTCTCACTTATAAAAGCTCTTTCGTTGATGTTCATTTTCTTATTTTTTTGTGTTTCCTTTTACTCTCTCCAGACACCCTTATAAAAAACTTAATCTTCCTCCAGACACCCTTGCGCTTTTCTTTTTCTCTTATGACTTTTCAGATTAACATCTTATTTAACTTTTTTTTGTTTATTAATTTTGTAATTGAATCAAAATATTCAATCTAAGGCTAATCTCACACTGAATTTTTGTGGGAATAAATTAGTGTAAGCAGTGGATGCTATTATTCATTGTTTGAATAATATGAAAAATGTCTAGAACAATTTTAAATAGAATGATAATTTTAAATGATTTACATGTTAAAATTTTTTACCTACATTATTCAAATAGTTGTGCACTTATATTTGATGGTTGTAGCAACTGTATGTTAATTGTAATGGAGCATCCATTACTTCAAAAGTATAGGTCCACTGATGATTCTATCAGGTGTTGAGTGATATATTAAATTAATATATAATATGCTTTTCATGTACTTAAAAGTCTAACATCTTAACAGATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAGGTAGCTGTTTCTCTCTTATGAAAAAAGTTGAATATAAATCTAAAAGATAACAATGATGATGAGTTTTGAACTTCTCAGACAAAACAGTGCTGGTTACTAGTATATCAAGATTTTTTATGTGAATGGAATGATTAAATATTGAAGTGACAGACCGCTTAGATGTTGCCACTTAAACTTTTCTTCACTATTTACTAGAGATCTTTTATGGAATGATAAACTTTTATTATCTCTGAACTAATGCTAATATCTATATCTATCAAGTGAAGCTCCACTTCTTAAATCAAGATGAGTTTGACTCGATATTTACATGATAAAGATATCATTCATGCTAACTTTATCTGAATCAATATCAAGCCAAGCCCCAATTCTTTAAAGAATTTAACTGAAATTCGGGTATTGATTTGTGACAGATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAGGTTAGTATGCCTTATGTTTAGTTCTTTTTTATCTAAGTTTCCCGGACTTAGGTGTGGGTGTCTGATACGGGTGTGTGTGGATCTAGAGGTCAGATCTTTTCATGATCTAAATTTGAAGACTCGAGGGTACGGATCCAGGTAAGTATACGGGTATGAGGATTCTGTTAAGAATAATTCAAATATCTAAAATTAGAGTTATAATCTAAATTATGTGACATTATGTGGAAAACTTACAAGGTATTCCGAGGAGTATCTAAAAAAGGAGATAAAAAGGAAAGGACTGACATAGAAATTTCTATATACAAGCTATTCCATTTTCTTCAATTCCACCTTAGTTTTTGTTTTGATTTCATAAATCATAGGTAGATATCCAATTTTACAAGAGATTGTTCAGTAACATATGACAATTTTCTGTAGTGAGCTTCTTGACGTGTCATTAGTTGAGTGTTTGACTGCTTCCTGTACAACCGATCATTATTTATTTTTCTCCGGTCTTAGTCACTACGTCTAATTTCTTCTGGTTTGTTTGTTCTTTATCATGTGGCATGCAGGTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGGGTACATCCTAACCTGAATAATCATTTTATTCACTTCATCTTGAAGAGATAGGAGATACAAAATCTTAGTACTTCCACAAAGTTAGCGTCACTCCGAAGTATTGTCTTAAGGACATGCAATAAATGATGTTCAATAAAATTGGCTTAAACAAAACTTATCTATTTTTTCAAGAAATGAATCTTGTCTAATTCAACTCTAAAAGCTAGCTCTTGACTCATGACATGGCCAACCCATTATCTCAACCAATAGGGACCACTTTAACATAATCTCACACATCCAAGCTTGGACATTTGGAGTGTTATGTGGGCTCAACATTGGATAAACCACGAATAAGGATAAATTTGATCTTGGTATTGAACCTTGGATGTAAATCTACCCCAAAAGCTAAATCATGATATGTGAACTGTCCAAGACCGTATAAGGAGACAACAACCCGTTCCTCCCTAACAAATGTGTATGCTTAACCTTTTAAAATTTAAAAATACTACTACATACCCGGTGAAATCCCACCAAGTGGAGTTTGGAGATAGTAGAGTGTATGCATCCCTTACCACTACCTCATGGAGATAGAGAGGTAGTTTCTGAAAGACCCTCGGCTCAAGTGTATCAAATTCAAGTAGAGGGAGAAAAATACAATGAAGAAAGCATAGTCATTAATAAGAAAATCAGTGCCAAGTATACAAGAAAGAAATAGTACCAAACATCAAAGTTGTGTGATATTGAAAACATAATAAACCATATATTGCAAGCACTACAACAGTACGACTAGTACTATGACTTCTATCCCTCTACCCTAATACACGACCTCCACTTCTTCCTATCTAGAGACATGTACTCGGTAATATGAAGTTGTGTCATGTCATGTCTAATCACCTTTCCCCAGTACTTCTTCGGCCTACATCTACCCTATGTGTGCCTTCTACAACCAGCCTCTCGCACCTTCTCACTGGGGCATCAACACACCTTCTCTGCACATGCTCAAACCATCTCAATCTTGCTTCTCTCATGTTGTCCGCCACTCCCAGGTTCTCCTGGATAACTTCATTCCTAATATTATCCCTCCTAGTATGCCTGCACATCCATCTCAACATCCACATCTTGGCAACATGCATCTTCTGCACATGTGAGTTCCTGCCTGGGATTTCCATTTAGATACCTCAATTAATGACATGACCTCTGTGAAACACCTGATGTCTATGAAAACTATGCCTATTAAGCACGATGCCTTGACATGGCACAATGTGTATTTCACATTCTTTTTCAGCCAATTAAATGACTTCAAATGGCTAATTTCTTTCCTTTTTTTGTTGCTCTTCTAGTTTTTCCTCTCTTTCTCAGGACTTTCTCTTGTATTCTTTTTGGATCATTGGTCTTTCTTTTCCCTTTCTGGAGGGCTCAAAAAGTTTACTTTTTCTTTTGATTATTTGTTATCAGAATCGAAGTGTCTTTGTTTTATTGCTGTATTTTCCATGTCATTCGCGTGTGGACTACTCATGTTTTATTTTCTTATTGTGTCCCTATAAAGTGTTGAATAGGCACAGTTTTCGCAAACTTTAGGTGTTTGATACGTGTTCTTAGTTTGACATGTCTAAATAAAAGTTGAAGTGGCCACATGTATTCAGCCAAAGTTTTATGTTCAAATCCAATAATTTTGCTCCTTCCATTTTGGACAATTTGTGGCAACTGTTTGGGCAGACCCCAATGCCAGAAGGCTCCTGCTTAGACGGGCTGGGGGGTGGCAAATGTAGCAGCCTTGCCTCCTCATTGGAGAAGTTGGTCCAAGATTCGTACCCTGGTCAACCATATAAACAGGAGCTATTGCTACAAGGTTGCCTCCTCTTAAAACAAAGCAAATCAGGAAATTTGAAGTTTAGGCAATGTGCTCATCTTATTGATGTACCCCCTGGAGAACTGAACAATCTGCACTGGAATTACAAAAAAAATAAAAAATATGTATATACCAGCGAGTTCCAGATCTCAAAATAGAAGTAAACTAGCTTAGCTTATTTACAGAAAACTCTTAAGACCTATGCTTGCAAGATACCCCTAGTTTTAGATTTGTTGATTTTTGAAGATGCAACAACATACCCAGCATAGTCCCACAGGTGGAGTCTGGGGAGGGTGAGGTGTACGCAAAGTCGCAAACCTTACCCCTATCCTTGAGAGACTAGTGAGGTTGTTTCCGATAGACCCCCGGCTTGAGAACAGGTTTGAAAGCTGAGCAAGTGTAGAAAAGCAATGATGAAAATAACGAAGAAAGACAAGTACTGACAATAAAATAGTGTAGATAGCCAAAATAAATGAAACAACAAATAGCAAGAAAAATCAAAGGATAAGGTAATGCCAACAGAAAAATAATAATATACTAGTAAGAAAACAGACTAGAACCCCCAAATGGTACCTTATTTTTGCAATTAATGCGTTAATCATTGTATATTGAGTTTCTTTTTTCTGCGTTTTTCTTGGCCTTGGTTTATATAAACAATCAGGAGATTATAGCACTGAAAAGAAAGTCTCATTTTGTGGTACTGTCCCAAATGATACCTTATTTTTGCAATTGATGCATTATGCATTATATATTGATTTTTTTTCTGTTTTTCCTCGGGCTTGGTTTATATCATCATCAGGAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTCAATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAGGTAAAACTTCATTTCTTTCTTTTTAACATGCAACTAAATTCACTTGTTTACCATGGCAAAGGTCCAAATACTAAAGACTAAAGCTTTGTGGGCTTGTTCTTGGTTTGAGGTGATTAAGGTTGTATATTAGCTGTTTGGTTTGACCCTCCCACCACATCTTTCCCCATAACGTTTGATGTGTAGCAGTTTTTTTGTGTTTGTTTATGCTCAACTTTCTAGCAGCTAATAATCTGTTAACAAATTCTGAAGAACCTGATCCACCTTGAATTATATTTGCCTGAAAAACAGTTGTGTGGAAAACTGCATGGATCCTAACAAAGAACTGTTTCCTGATCCAGCTTCTAAGTTTTCTAGTTTCTTAATGCTAATATATATGATGCAAAAGTCAAGAATTGGCTTTAATAGTTAGTACTAGTATATATGTACAAGAGTTAAAATTCAAATTGTTAAAAAATTCACGTGGTTCCAAGACATAATACTGCATTGTTAATAGTGTCAGGTCTTAGACAAATTAGAAACCGACTTTGATAAATTTAGGTTCTTGTTTTCTCCATTTTCATGCATATCTATTGCTGGATGTCTTTGGCTAGATGCCAGCATTTAAGGCCCCAAATACGGGTGTGGCCATTTTGAGGGGGCAGTGTTTTGGGAAGCGAGAAGCGGAAAAAAGCGATGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGCGAAGCGCGCACATTTTTAAAAAAAAGCGACATTTAGTATAAAAATAAAAAAATATTAAATTACTAAAAAGAGGTAATATAGTCTTAGATTGAAAGAAATTACTTAGAAAAAATACTCACAAGTCATAACATATAAAGCAAAAAATCAAAAACATAATTAAATCACAAAATACTACAAACAAAAGGAAGTTTCAGAAAATAATAAAAAAAGGCTGCTAGCATACACACTGATCACCAAAAAAAAAAAAAGAATTGAAAAAAAAACAGAGGCAGCAGTCAGTTAAGAACTAAGAAGAAAAGAGCAGGCAGCAGAGAATAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAAGAGATGAACAAATTACCTGCAGGCCTCAGTCGAGATCTTGAGGAGAGAAAGAAAGGAGGCAGCCAGCAGCCTCAGTCGAGATCTTCACGAGAAAAAGAAGGGCGGCAGCCAGCAGCCTCAGTTGAGAGCTTCAGGAGAGAGAAGGGAAAGAAAGTCGCGAGGAGAGAAGGGAAAAAGAGTCACGAGGAGAAAAGGGAAAGAAGAGTTGTGAGGAGAGAGAAGTTATATTTCAGATTTTTTAAAAAAAAAACCTATTTTTTTTAAAAAAACCCTAATTGTCGCTTTTTTTTTTATTATAAAAAGCGCGCTTTTTTGCGCTTTTTCCTCAGCGTCGCTTCTCGCTTCTTCCTCTGAAGCGAGTGCTTTTTTCAAATCGCCTCGCTTCAAGTTAAAAAAGCGCACAAGGGTCGCCTTGCTTTGAAGCGCGCTTTTCTGCGCTTTTAACAAAACTGTGAGGGGGTGAAGAAACATCCTTGTTCTCTGAGTCATTACACTTGTAGAAGTTCAGTTTTCTCTGGCATACCATGTGATCGGGAGGTCACGGGTTATCTTGCAGAAATGTAGTGTAAGACTGAGTACAATAGACCCTTGTGATCCATCCCTTCCCTGACCCCTCATAGCAGGAGCTTAGTGCACCGGTCTGCTTTCTTTAGGTTCAGTTTCCACCTGTGATGACCAAACTCTCTCTTGTATATATTAGAAATGCCACATGCAGCAGGGATATCTCCAACTTCATCCAGGATAACATTTCGTTTCCTCTGCCTATTGTAATTAATTTTGAGTCTAGTTAAACTTACATGTTAGACAGAAGAAGACGGACTGCCAAAATATTACAATTTTTACACCAATCCTTTCAAAATGATAAATTTCAAAGCAACCTACTGAACAAACACTGTATTCTGGGGAAAAAAGAATCGAAGCTATCAAAACACCACAACAGACCCGTTTTTTTTAAAAAAAAATTGAATACAGGGTTGGGGAAATGGAAATGGGAAGGGGATTACAAAGCAGGGAATCAAACTCTCACCAATGTGGTGAAAGTTCGGGTAGTCAACCCACCAACTGAACTACTAATATTCCTCACCCAAACCTGTTTCAAGATTGAGGAAGAGAACACATTCAAATGTCAGGAACAACACCGAGAAAAGCTCATATTCTTGAGAATCCACTGATGCGTATTACTCAATATTTGTATTCCAGCAAAGGTTTTACATTTTAATACTTCGATTTGCCTGTTGATGGCAGGTGACTGGGAACTGCTGACTTA</genome_strand>
        <mrna_strand>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTNCATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGGGAACTGCTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E327158" ref_strand="+" ref_description="SGN-E327158 [cTOC-18-D23]">
      <seq>gatgataatgtgccgggagaaacgcaaaatgacaattttcagccacaagacttttacatgaattcttctgaaagaagtgaccgtgaaggttcttctatggatcagagtggtgatgatccctatcattccatattctataatcgtgatgaaaatttagaggatgttctcaatatgcatcgggccctgcgtaatgacaactataagaatgcaataaagtatttacgacatgctctgcattccagtccaccagtactagaggcttttcatcctttaatacagatgctgctgctcggggatcaggtgaaggaggctcttgatgaggtggaaaaatttactccatacaccaacacatcatttcagttgagatctctgtcctgataacacttccaattgttatgttcaaaaggttgaaagctactatcttggagcattttgacagcggtaactatgtcaaactttcagcaatccatgaggaaaatttggagaaagatcctgcttgtagccactcattggggagactcatcatcttgcatagaaggggagagtatagcactgaaaagctgatggaaatgatagctttgcatttggatgctactcatgcaaattgtgacacatggaanggagtagcttgttgcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="56920" stop="49627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56620" g_stop="56476" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56475" i_stop="55377" i_length="1099">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55376" g_stop="55243" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="279" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53874" g_stop="53789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="365" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53788" i_stop="53379" i_length="410">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53378" g_stop="53338" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="406" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53337" i_stop="52787" i_length="551">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52786" g_stop="52653" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="540" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52652" i_stop="50026" i_length="2627">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50025" g_stop="49927" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="639" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E327158" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56620" e_stop="56476"/>
          <exon e_start="55376" e_stop="55243"/>
          <exon e_start="53874" e_stop="53789"/>
          <exon e_start="53378" e_stop="53338"/>
          <exon e_start="52786" e_stop="52653"/>
          <exon e_start="50025" e_stop="49927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTGGTGAGTGTTGCTCATGGCTTAAAGATTTGTCTATGCGGCGGCATAGTCATACATGAAATTCAAAAGGGTAGCAAATTTTGCTTTTACTTGCAGAGAACCTTAGAGCCTGGTTCATGGCAATTGGATTTGGACTTGAGGTACAATATGTAGTATGGGCTGAAAAAACAAGTTGACTTTTCTTTTTCCCTTCTCTCTTATGAAGGGGTCAGACGAGACCCTTTATCTCTGTGTCTTAATTGAAGTTGGCACGATTGATGACTGATTATTGTTGATTTCAAGAATGAACATGTCTATCATTCGAATAATTACCTTTAGTTTGTACAGGTCATTCTGTAATGTGAATTTAGCCTCTAATTTTTCTTTGGGTTTAGGTATGTTACAAGTGTTGGCATAGGGTATACTTTAGCCAAAAAATAGTTACATATAATTACATAGGAATGTGGTTATAGGTACGTATTGTCTGGGTCTTCTTTAGACATTAAAATGAATGGCATCTTCCAAGAACTCTCCAGATGAGTGGGAGGAGGAGCAGCTGACTAATGACAACAGCAGCCAAGCTTCCCTCCCTCATTTTGGGTTGTTGCAAAATCATACCTGCAAGGAACATGGGAAAAAGTGTGGACTTTTAAAATTTTCAATACTTTGGATGGTGACAAAATGGGCCTGCCCTGGATTATATACTTCAGTTTCCTAAAGGGATGATGTGAAGATGAGGAAGTTAGTACTTTAGGAGAGAACATTCTCTTGGAATATTCTCAAAAGGATGAAAAGGCAGTTGACATGAGGTGTATAGAATCTGGAATTTCTAAGTCCTTCAACCCTTGTGAAGGTGGATATTGTGCATTCGACATGGTTTGGGTTTTTTTTAAGCTCCAATTGAGATACATTATGTTCTTTATTTTTGGATAACCACGGTGTCCATGGCCATCTTACGCATAACTCGACTAATTCCAAAAAATACTGTCACCACCCAGCTCCCAACAATAATATAATATATGTCATGTTCTTCTTGCTGATTAGATTTAATTATGATATTTCTTACTCTATTCAAATGTAGGTCTTCCATTGTGGTTATTGCCTTTACAATTGCCTTCCTCAGATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAGGTAATTGCTTATGTCCAAGAAAGAATTCAGACAGAATTTTTCAAATTTATTCAGAACTGTATTTTATAGATGTCGTAGGAAGTTCATGCATGTTCACATTATCCCCAACTCTCGGAAGAGGACTCCGTAACCTCATATTGGTTGGTTATATGTATCTGTTTGTGTATCTCTATTTTCTGCATGCTGATCATTGTGTTAGCTTCATCAGCTAAAACCAATAGAGGAGAACTCCTTTTTTATTTGAAACCTAGCCCTGGGGCTCATAATGATTCAAGTTGTTGAACACAGCTTGAACTTGAAATTAAGCTGGTATATTAAACGCACCACCTCAAATTAGTTTCATCTCAAGTTGTTTGTGTTCAATAATGTTAAAAATTCTAATATTTATGAATGTTTTGTAAATATATACTTCAAGAATATATTTGCAAATATTCCATCTTATTTATTCGAGTTGGTATCTAGATACTCTATTTACATTGACAATTTGTATAGAAGGTTAAACTTCATCAGTTAGCACCGCCAGGCTCAAAATGTAAGTGGGTGCTTCAGTTGAATGGCGGGTGAAATGTTGACCAAATCCTCCGCGACACGAGTTCGATTCTCATTTTCTACAATTTTTTCTTATTCTGATGATGTTTTTCTTTTTTGAAACTGGGAATGTTGTTATTTTCTTATTCGTCTTGCTTTCCTTTTTACTCCTCTTTTCCATTTTTACTTTTCTATCCTTTTTCCAGACAATACAATCTCTTCCAGAAAGAAGAACACTATCTCTTTTTACTTCCCCTCCTGAAAAAACTTAATCTTCCTCCAAAACAGAAAGAATTTTTTTTTTCTCACTTATAAAAGCTCTTTCGTTGATGTTCATTTTCTTATTTTTTTGTGTTTCCTTTTACTCTCTCCAGACACCCTTATAAAAAACTTAATCTTCCTCCAGACACCCTTGCGCTTTTCTTTTTCTCTTATGACTTTTCAGATTAACATCTTATTTAACTTTTTTTTGTTTATTAATTTTGTAATTGAATCAAAATATTCAATCTAAGGCTAATCTCACACTGAATTTTTGTGGGAATAAATTAGTGTAAGCAGTGGATGCTATTATTCATTGTTTGAATAATATGAAAAATGTCTAGAACAATTTTAAATAGAATGATAATTTTAAATGATTTACATGTTAAAATTTTTTACCTACATTATTCAAATAGTTGTGCACTTATATTTGATGGTTGTAGCAACTGTATGTTAATTGTAATGGAGCATCCATTACTTCAAAAGTATAGGTCCACTGATGATTCTATCAGGTGTTGAGTGATATATTAAATTAATATATAATATGCTTTTCATGTACTTAAAAGTCTAACATCTTAACAGATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAGGTAGCTGTTTCTCTCTTATGAAAAAAGTTGAATATAAATCTAAAAGATAACAATGATGATGAGTTTTGAACTTCTCAGACAAAACAGTGCTGGTTACTAGTATATCAAGATTTTTTATGTGAATGGAATGATTAAATATTGAAGTGACAGACCGCTTAGATGTTGCCACTTAAACTTTTCTTCACTATTTACTAGAGATCTTTTATGGAATGATAAACTTTTATTATCTCTGAACTAATGCTAATATCTATATCTATCAAGTGAAGCTCCACTTCTTAAATCAAGATGAGTTTGACTCGATATTTACATGATAAAGATATCATTCATGCTAACTTTATCTGAATCAATATCAAGCCAAGCCCCAATTCTTTAAAGAATTTAACTGAAATTCGGGTATTGATTTGTGACAGATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAGGTTAGTATGCCTTATGTTTAGTTCTTTTTTATCTAAGTTTCCCGGACTTAGGTGTGGGTGTCTGATACGGGTGTGTGTGGATCTAGAGGTCAGATCTTTTCATGATCTAAATTTGAAGACTCGAGGGTACGGATCCAGGTAAGTATACGGGTATGAGGATTCTGTTAAGAATAATTCAAATATCTAAAATTAGAGTTATAATCTAAATTATGTGACATTATGTGGAAAACTTACAAGGTATTCCGAGGAGTATCTAAAAAAGGAGATAAAAAGGAAAGGACTGACATAGAAATTTCTATATACAAGCTATTCCATTTTCTTCAATTCCACCTTAGTTTTTGTTTTGATTTCATAAATCATAGGTAGATATCCAATTTTACAAGAGATTGTTCAGTAACATATGACAATTTTCTGTAGTGAGCTTCTTGACGTGTCATTAGTTGAGTGTTTGACTGCTTCCTGTACAACCGATCATTATTTATTTTTCTCCGGTCTTAGTCACTACGTCTAATTTCTTCTGGTTTGTTTGTTCTTTATCATGTGGCATGCAGGTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGGGTACATCCTAACCTGAATAATCATTTTATTCACTTCATCTTGAAGAGATAGGAGATACAAAATCTTAGTACTTCCACAAAGTTAGCGTCACTCCGAAGTATTGTCTTAAGGACATGCAATAAATGATGTTCAATAAAATTGGCTTAAACAAAACTTATCTATTTTTTCAAGAAATGAATCTTGTCTAATTCAACTCTAAAAGCTAGCTCTTGACTCATGACATGGCCAACCCATTATCTCAACCAATAGGGACCACTTTAACATAATCTCACACATCCAAGCTTGGACATTTGGAGTGTTATGTGGGCTCAACATTGGATAAACCACGAATAAGGATAAATTTGATCTTGGTATTGAACCTTGGATGTAAATCTACCCCAAAAGCTAAATCATGATATGTGAACTGTCCAAGACCGTATAAGGAGACAACAACCCGTTCCTCCCTAACAAATGTGTATGCTTAACCTTTTAAAATTTAAAAATACTACTACATACCCGGTGAAATCCCACCAAGTGGAGTTTGGAGATAGTAGAGTGTATGCATCCCTTACCACTACCTCATGGAGATAGAGAGGTAGTTTCTGAAAGACCCTCGGCTCAAGTGTATCAAATTCAAGTAGAGGGAGAAAAATACAATGAAGAAAGCATAGTCATTAATAAGAAAATCAGTGCCAAGTATACAAGAAAGAAATAGTACCAAACATCAAAGTTGTGTGATATTGAAAACATAATAAACCATATATTGCAAGCACTACAACAGTACGACTAGTACTATGACTTCTATCCCTCTACCCTAATACACGACCTCCACTTCTTCCTATCTAGAGACATGTACTCGGTAATATGAAGTTGTGTCATGTCATGTCTAATCACCTTTCCCCAGTACTTCTTCGGCCTACATCTACCCTATGTGTGCCTTCTACAACCAGCCTCTCGCACCTTCTCACTGGGGCATCAACACACCTTCTCTGCACATGCTCAAACCATCTCAATCTTGCTTCTCTCATGTTGTCCGCCACTCCCAGGTTCTCCTGGATAACTTCATTCCTAATATTATCCCTCCTAGTATGCCTGCACATCCATCTCAACATCCACATCTTGGCAACATGCATCTTCTGCACATGTGAGTTCCTGCCTGGGATTTCCATTTAGATACCTCAATTAATGACATGACCTCTGTGAAACACCTGATGTCTATGAAAACTATGCCTATTAAGCACGATGCCTTGACATGGCACAATGTGTATTTCACATTCTTTTTCAGCCAATTAAATGACTTCAAATGGCTAATTTCTTTCCTTTTTTTGTTGCTCTTCTAGTTTTTCCTCTCTTTCTCAGGACTTTCTCTTGTATTCTTTTTGGATCATTGGTCTTTCTTTTCCCTTTCTGGAGGGCTCAAAAAGTTTACTTTTTCTTTTGATTATTTGTTATCAGAATCGAAGTGTCTTTGTTTTATTGCTGTATTTTCCATGTCATTCGCGTGTGGACTACTCATGTTTTATTTTCTTATTGTGTCCCTATAAAGTGTTGAATAGGCACAGTTTTCGCAAACTTTAGGTGTTTGATACGTGTTCTTAGTTTGACATGTCTAAATAAAAGTTGAAGTGGCCACATGTATTCAGCCAAAGTTTTATGTTCAAATCCAATAATTTTGCTCCTTCCATTTTGGACAATTTGTGGCAACTGTTTGGGCAGACCCCAATGCCAGAAGGCTCCTGCTTAGACGGGCTGGGGGGTGGCAAATGTAGCAGCCTTGCCTCCTCATTGGAGAAGTTGGTCCAAGATTCGTACCCTGGTCAACCATATAAACAGGAGCTATTGCTACAAGGTTGCCTCCTCTTAAAACAAAGCAAATCAGGAAATTTGAAGTTTAGGCAATGTGCTCATCTTATTGATGTACCCCCTGGAGAACTGAACAATCTGCACTGGAATTACAAAAAAAATAAAAAATATGTATATACCAGCGAGTTCCAGATCTCAAAATAGAAGTAAACTAGCTTAGCTTATTTACAGAAAACTCTTAAGACCTATGCTTGCAAGATACCCCTAGTTTTAGATTTGTTGATTTTTGAAGATGCAACAACATACCCAGCATAGTCCCACAGGTGGAGTCTGGGGAGGGTGAGGTGTACGCAAAGTCGCAAACCTTACCCCTATCCTTGAGAGACTAGTGAGGTTGTTTCCGATAGACCCCCGGCTTGAGAACAGGTTTGAAAGCTGAGCAAGTGTAGAAAAGCAATGATGAAAATAACGAAGAAAGACAAGTACTGACAATAAAATAGTGTAGATAGCCAAAATAAATGAAACAACAAATAGCAAGAAAAATCAAAGGATAAGGTAATGCCAACAGAAAAATAATAATATACTAGTAAGAAAACAGACTAGAACCCCCAAATGGTACCTTATTTTTGCAATTAATGCGTTAATCATTGTATATTGAGTTTCTTTTTTCTGCGTTTTTCTTGGCCTTGGTTTATATAAACAATCAGGAGATTATAGCACTGAAAAGAAAGTCTCATTTTGTGGTACTGTCCCAAATGATACCTTATTTTTGCAATTGATGCATTATGCATTATATATTGATTTTTTTTCTGTTTTTCCTCGGGCTTGGTTTATATCATCATCAGGAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCC</genome_strand>
        <mrna_strand>GATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAANGGAGTAGCTTGTTGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E451819" ref_strand="+" ref_description="SGN-E451819 [cSTS-14-E22]">
      <seq>gttggacagatttgatagcacggtgcagtcagaaacctttgaggacagaatatttatgtccatttcaaattcagaggggcatgatgctgttgaaggccaagagactaattctccattccattgtgattcaaacacctctattaggaatgataaagaagatcttgggagttgatgtcagtcaacagagagaagtcgccatggtcaatgatgataatgtgccgggagaaacacaaaatgacaattttcagccacaagacttttacttgaattctgctgaaagaagtgatcatgaaggttcttctatggatcagagtggtgatgttccctatcattccatattctgcaatcgtggtcttccactgtggttattgcctttacaattgccttcctcaaatgaaaatttagaggatgatctcaataggcatcggaccctgcgtaatgaccactataagaatgcaataaagtatttacggcatgctctgcattctagtccaccagtgctcgaggcttttcatcctttaatacagatgctgcttctcggggatcaggtaaaggaggctcttgatgaggtggaaaaatttactccatactccaacacatcatttcagttgaggttgaaagctactatcttggagcattttgacaacagtaactatgtcaaactttcagcaatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="57125" stop="52422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56825" g_stop="56476" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56475" i_stop="55419" i_length="1057">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55418" g_stop="55243" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="527" r_length="176" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53874" g_stop="53789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="613" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53788" i_stop="52787" i_length="1002">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52786" g_stop="52722" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="678" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E451819" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56825" e_stop="56476"/>
          <exon e_start="55418" e_stop="55243"/>
          <exon e_start="53874" e_stop="53789"/>
          <exon e_start="52786" e_stop="52722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGACAGATTTGATAGCACGGTGCAGTCAGAGACCTTTGAGGACAGAATATTTATGTCCATTTTAAATTCAGAGGAGCATGATGCTGTTGAAGGCGAAGAGGCTAATTCTCCATTCAATTGTGATTCAAACACCTCTATTAGGAATGATAAAG-AGATCTTGGGAGTTGATGTCAGTCAACAGAGAGAAGTTGCCATGGTTGATGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTGGTGAGTGTTGCTCATGGCTTAAAGATTTGTCTATGCGGCGGCATAGTCATACATGAAATTCAAAAGGGTAGCAAATTTTGCTTTTACTTGCAGAGAACCTTAGAGCCTGGTTCATGGCAATTGGATTTGGACTTGAGGTACAATATGTAGTATGGGCTGAAAAAACAAGTTGACTTTTCTTTTTCCCTTCTCTCTTATGAAGGGGTCAGACGAGACCCTTTATCTCTGTGTCTTAATTGAAGTTGGCACGATTGATGACTGATTATTGTTGATTTCAAGAATGAACATGTCTATCATTCGAATAATTACCTTTAGTTTGTACAGGTCATTCTGTAATGTGAATTTAGCCTCTAATTTTTCTTTGGGTTTAGGTATGTTACAAGTGTTGGCATAGGGTATACTTTAGCCAAAAAATAGTTACATATAATTACATAGGAATGTGGTTATAGGTACGTATTGTCTGGGTCTTCTTTAGACATTAAAATGAATGGCATCTTCCAAGAACTCTCCAGATGAGTGGGAGGAGGAGCAGCTGACTAATGACAACAGCAGCCAAGCTTCCCTCCCTCATTTTGGGTTGTTGCAAAATCATACCTGCAAGGAACATGGGAAAAAGTGTGGACTTTTAAAATTTTCAATACTTTGGATGGTGACAAAATGGGCCTGCCCTGGATTATATACTTCAGTTTCCTAAAGGGATGATGTGAAGATGAGGAAGTTAGTACTTTAGGAGAGAACATTCTCTTGGAATATTCTCAAAAGGATGAAAAGGCAGTTGACATGAGGTGTATAGAATCTGGAATTTCTAAGTCCTTCAACCCTTGTGAAGGTGGATATTGTGCATTCGACATGGTTTGGGTTTTTTTTAAGCTCCAATTGAGATACATTATGTTCTTTATTTTTGGATAACCACGGTGTCCATGGCCATCTTACGCATAACTCGACTAATTCCAAAAAATACTGTCACCACCCAGCTCCCAACAATAATATAATATATGTCATGTTCTTCTTGCTGATTAGATTTAATTATGATATTTCTTACTCTATTCAAATGTAGGTCTTCCATTGTGGTTATTGCCTTTACAATTGCCTTCCTCAGATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAGGTAATTGCTTATGTCCAAGAAAGAATTCAGACAGAATTTTTCAAATTTATTCAGAACTGTATTTTATAGATGTCGTAGGAAGTTCATGCATGTTCACATTATCCCCAACTCTCGGAAGAGGACTCCGTAACCTCATATTGGTTGGTTATATGTATCTGTTTGTGTATCTCTATTTTCTGCATGCTGATCATTGTGTTAGCTTCATCAGCTAAAACCAATAGAGGAGAACTCCTTTTTTATTTGAAACCTAGCCCTGGGGCTCATAATGATTCAAGTTGTTGAACACAGCTTGAACTTGAAATTAAGCTGGTATATTAAACGCACCACCTCAAATTAGTTTCATCTCAAGTTGTTTGTGTTCAATAATGTTAAAAATTCTAATATTTATGAATGTTTTGTAAATATATACTTCAAGAATATATTTGCAAATATTCCATCTTATTTATTCGAGTTGGTATCTAGATACTCTATTTACATTGACAATTTGTATAGAAGGTTAAACTTCATCAGTTAGCACCGCCAGGCTCAAAATGTAAGTGGGTGCTTCAGTTGAATGGCGGGTGAAATGTTGACCAAATCCTCCGCGACACGAGTTCGATTCTCATTTTCTACAATTTTTTCTTATTCTGATGATGTTTTTCTTTTTTGAAACTGGGAATGTTGTTATTTTCTTATTCGTCTTGCTTTCCTTTTTACTCCTCTTTTCCATTTTTACTTTTCTATCCTTTTTCCAGACAATACAATCTCTTCCAGAAAGAAGAACACTATCTCTTTTTACTTCCCCTCCTGAAAAAACTTAATCTTCCTCCAAAACAGAAAGAATTTTTTTTTTCTCACTTATAAAAGCTCTTTCGTTGATGTTCATTTTCTTATTTTTTTGTGTTTCCTTTTACTCTCTCCAGACACCCTTATAAAAAACTTAATCTTCCTCCAGACACCCTTGCGCTTTTCTTTTTCTCTTATGACTTTTCAGATTAACATCTTATTTAACTTTTTTTTGTTTATTAATTTTGTAATTGAATCAAAATATTCAATCTAAGGCTAATCTCACACTGAATTTTTGTGGGAATAAATTAGTGTAAGCAGTGGATGCTATTATTCATTGTTTGAATAATATGAAAAATGTCTAGAACAATTTTAAATAGAATGATAATTTTAAATGATTTACATGTTAAAATTTTTTACCTACATTATTCAAATAGTTGTGCACTTATATTTGATGGTTGTAGCAACTGTATGTTAATTGTAATGGAGCATCCATTACTTCAAAAGTATAGGTCCACTGATGATTCTATCAGGTGTTGAGTGATATATTAAATTAATATATAATATGCTTTTCATGTACTTAAAAGTCTAACATCTTAACAGATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAGGTAGCTGTTTCTCTCTTATGAAAAAAGTTGAATATAAATCTAAAAGATAACAATGATGATGAGTTTTGAACTTCTCAGACAAAACAGTGCTGGTTACTAGTATATCAAGATTTTTTATGTGAATGGAATGATTAAATATTGAAGTGACAGACCGCTTAGATGTTGCCACTTAAACTTTTCTTCACTATTTACTAGAGATCTTTTATGGAATGATAAACTTTTATTATCTCTGAACTAATGCTAATATCTATATCTATCAAGTGAAGCTCCACTTCTTAAATCAAGATGAGTTTGACTCGATATTTACATGATAAAGATATCATTCATGCTAACTTTATCTGAATCAATATCAAGCCAAGCCCCAATTCTTTAAAGAATTTAACTGAAATTCGGGTATTGATTTGTGACAGATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAGGTTAGTATGCCTTATGTTTAGTTCTTTTTTATCTAAGTTTCCCGGACTTAGGTGTGGGTGTCTGATACGGGTGTGTGTGGATCTAGAGGTCAGATCTTTTCATGATCTAAATTTGAAGACTCGAGGGTACGGATCCAGGTAAGTATACGGGTATGAGGATTCTGTTAAGAATAATTCAAATATCTAAAATTAGAGTTATAATCTAAATTATGTGACATTATGTGGAAAACTTACAAGGTATTCCGAGGAGTATCTAAAAAAGGAGATAAAAAGGAAAGGACTGACATAGAAATTTCTATATACAAGCTATTCCATTTTCTTCAATTCCACCTTAGTTTTTGTTTTGATTTCATAAATCATAGGTAGATATCCAATTTTACAAGAGATTGTTCAGTAACATATGACAATTTTCTGTAGTGAGCTTCTTGACGTGTCATTAGTTGAGTGTTTGACTGCTTCCTGTACAACCGATCATTATTTATTTTTCTCCGGTCTTAGTCACTACGTCTAATTTCTTCTGGTTTGTTTGTTCTTTATCATGTGGCATGCAGGTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATG</genome_strand>
        <mrna_strand>GTTGGACAGATTTGATAGCACGGTGCAGTCAGAAACCTTTGAGGACAGAATATTTATGTCCATTTCAAATTCAGAGGGGCATGATGCTGTTGAAGGCCAAGAGACTAATTCTCCATTCCATTGTGATTCAAACACCTCTATTAGGAATGATAAAGAAGATCTTGGGAGTTGATGTCAGTCAACAGAGAGAAGTCGCCATGGTCAATGATGATAATGTGCCGGGAGAAACACAAAATGACAATTTTCAGCCACAAGACTTTTACTTGAATTCTGCTGAAAGAAGTGATCATGAAGGTTCTTCTATGGATCAGAGTGGTGATGTTCCCTATCATTCCATATTCTGCAATCGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCACTGTGGTTATTGCCTTTACAATTGCCTTCCTCAAATGAAAATTTAGAGGATGATCTCAATAGGCATCGGACCCTGCGTAATGACCACTATAAGAATGCAATAAAGTATTTACGGCATGCTCTGCATTCTAGTCCACCAGTGCTCGAGGCTTTTCATCCTTTAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTTCTCGGGGATCAGGTAAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACTCCAACACATCATTTCAGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGCTACTATCTTGGAGCATTTTGACAACAGTAACTATGTCAAACTTTCAGCAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E554284" ref_strand="+" ref_description="SGN-E554284 [cTSC-3-M7]">
      <seq>aacaaataaggacatgtgaaagttcctcaaacaaacacgcctctgtcaaggatcatcctgccacgacagcactgtttcggtttcttcttctcaactctttcttttttagacataaaaatgttcataaaatagcagaggtgtcaaagaaatggagtgcagcagcagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63352" stop="66981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63652" g_stop="63999" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="579" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="659" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66681" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="806" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E554284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63652" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAAC</genome_strand>
        <mrna_strand>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E295000" ref_strand="+" ref_description="SGN-E295000 [cLET-17-L20]">
      <seq>gtgtcaaagaaatggagtgcagcagcagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63489" stop="66709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63789" g_stop="63999" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="442" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66409" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="493" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E295000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63789" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGG</genome_strand>
        <mrna_strand>GTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E710393" ref_strand="+" ref_description="SGN-E710393 [FA55BB09]">
      <seq>ctgtagcagcagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatgggggtgaactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63506" stop="67193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63805" g_stop="63999" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="426" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="506" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66702" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="674" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66785" g_stop="66893" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="783" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E710393" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63805" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66702"/>
          <exon e_start="66785" e_stop="66893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTT</genome_strand>
        <mrna_strand>CTGTAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG..................................................................................GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGGGGTGAACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E203158" ref_strand="+" ref_description="SGN-E203158 [cLEB-3-F2]">
      <seq>gcacgagagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttcccgatggaccttcacgtggttatgtcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63507" stop="66957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63807" g_stop="63999" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="423" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="503" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66657" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="626" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E203158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63807" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTG</genome_strand>
        <mrna_strand>GCACGAG-AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCCGATGGACCTTCACGTGGTTATGTCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E277124" ref_strand="+" ref_description="SGN-E277124 [cLEL-3-A12]">
      <seq>gcacgagagaacttccaattatccttcttattttgagtaccaaacaggatttggggagtcgtttttcatctgaagctatagtccggcacttctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63507" stop="66727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63807" g_stop="63999" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="426" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66427" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="495" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E277124" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63807" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTT-GGGAATCATTTTTCATCTGAAGCTATAGT-TGG-AGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCC</genome_strand>
        <mrna_strand>GCACGAG-AGAACTTCCAATTATCCTTCTTATTTTGAGTACCAAACAGGATTTGGGGAGTCGTTTTTCATCTGAAGCTATAGTCCGGCACTTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E747545" ref_strand="+" ref_description="SGN-E747545 [GI|8131904]">
      <seq>cacgagagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataagtatgatttaagcaagttctgcccttacaatactgtattgatggaccacagtgatccttcaattaacacagttttgacagcaccaacagataaacctggtgtggcgttgcttgactttgtcattttccctccccggtggttggttgctgaacacaccttccgtcctccatattatcatcgcaattgtatgagcgaatttatgggtctaatctatggcggatacgaggcaaaagctgatggttttcaccctggcggggcaagccttcacagctgcatgactcctcatggtcctgataccaaaacatttgaggcaaccattgcacttggaaatgaagctggtccacatagaatagctgataccatggctttcatgtttgagtcttgcctagtaccccgagtctgtccgtgggctcttgaatctccgtttatggatcacgattattaccaatgctggattggcttgaagtctcacttctcaggactatctatgaacgaagacaacgtcgatttgcagaaagggaaaacccatagaaagggtgaaatgctcattgttcagctagctcctgtagttcctcctaaagtgacttaaagtgacttaaacttgtacataaggagtcacaggcatgtaaaacatgaaataaaccctatgttagtatcagattgaaagtttagggtggcgatccaagcgcggatatagtggtaagatgaaaccaatgttctatgaaattgcgacgcaagtaaaaatgtgttaccgtgatgatgttgcatgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63508" stop="69007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63808" g_stop="63999" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="422" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="502" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66702" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="670" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66785" g_stop="66960" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="846" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66961" i_stop="67098" i_length="138">
            <donor d_prob="0.334" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67099" g_stop="67168" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="916" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67169" i_stop="67287" i_length="119">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67288" g_stop="67442" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1071" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84">
            <donor d_prob="0.331" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67527" g_stop="67610" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1155" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68257" g_stop="68709" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1620" r_length="465" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E747545" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1609</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63808" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66702"/>
          <exon e_start="66785" e_stop="66960"/>
          <exon e_start="67099" e_stop="67168"/>
          <exon e_start="67288" e_stop="67442"/>
          <exon e_start="67527" e_stop="67610"/>
          <exon e_start="68257" e_stop="68709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAGGTTGGTTAGGCTTAAATATCAGCAGTTCATCTATTAATTGTCATTGCTCTGTGTGAATTTTGTTCTTAAATTGTCGGTGTCGCTAGTTACAATTGCTCTAGTTTCTTAAATCAATGCAGTTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAGGTTGTTTATCTCACTCTTGCATGAAGTCAATGTCAATTCTGGGGTTATTTCATACAATTTTTAATGCGGTTAAGCTTGTTTTAGGCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAGGTACAACTCCTGCTGTATTCCCCCCTTTTCTATGGCCATGCCCTTCCCGCATATGCGGCTTTATTTACAAGGAAATTTGTTCCTTTTAGTCCCTCCAATGTCAACAAAATTCTGATTTGGTCCTTGTAACAAACCCGAATTGCTCACTATGTTGATAAGAGAACTAAAACGTGATTACAATTTTAGAATTGTAATTGCAATACCCAAACTAGTGAATTACAATAGATATATGAAAATAACAAGTAACTAACGATAGAGATAAGAATGGAAGCTTAGACTCTAGAAGAAAAAGAGGATAGACAACCCATGAATCAGTGACCGCTACCCCTTTTAATGGACACCCACTACTCGGCCAGAACCCCAAATTAACCTTGTTTTCGGCCCAATAGCCCTTGCCAGCCCAGTAACTACTTGTGTTGACCTTGGTATTCATATTGGGTTGAACTTGGTACATAACAGTCCTTGTGTGATTTCCGATACACATTTAATCACAAGTAATATGTGCCCTTTTGATCCTTCCACTTCCGAATCATCACAAATTTAACGATGATCTTAAGTGCTGAACTATTTAATTGTTGATATATTATCTTAAATTTGTATTGTTACTCCACATTCGAGGGTAAAATTCTAAAAAATGTATTGACAGGCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAA-GGAAAACCCATAGAAA-GGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCT-C--------C-TAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACT</genome_strand>
        <mrna_strand>CACGAG-AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG..................................................................................GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAG..........................................................................................................................................TATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAG.......................................................................................................................TTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG....................................................................................GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGGAAAACCCATAGAAAGGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E379081" ref_strand="+" ref_description="SGN-E379081 [TUS-1-N24]">
      <seq>agaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataangcgggtatttctctatatttcatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="67289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="66989" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="719" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E379081" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTC</genome_strand>
        <mrna_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAANGCGGGTATTTCTCTATATTTC-ATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E374588" ref_strand="+" ref_description="SGN-E374588 [TUS-15-L1]">
      <seq>agaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="67239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="66940" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="671" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E374588" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATG</genome_strand>
        <mrna_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E212599" ref_strand="+" ref_description="SGN-E212599 [cLEC-74-F24]">
      <seq>agaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="67133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="416" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="496" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66702" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="664" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66785" g_stop="66833" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="713" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E212599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66702"/>
          <exon e_start="66785" e_stop="66833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTG</genome_strand>
        <mrna_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG..................................................................................GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E204603" ref_strand="+" ref_description="SGN-E204603 [cLEC-14-G15]">
      <seq>agaactttcaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="67103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="66803" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="534" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E204603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGC</genome_strand>
        <mrna_strand>AGAACTTTCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E329161" ref_strand="+" ref_description="SGN-E329161 [cTOD-2-I2]">
      <seq>agaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="66896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="416" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="496" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66596" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="558" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E329161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTG</genome_strand>
        <mrna_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E379733" ref_strand="-" ref_description="SGN-E379733 [TUS-1-N24]">
      <seq>aggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataaggcgggtatttctctatatttcaatctctcataatatgagtgcccttgtgcactttttatcacaatttactttgctacatggaaacttgatgctgtatgcctccttagtcctgacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63604" stop="67377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63904" g_stop="63999" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="176" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="67077" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="719" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E379733" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63904" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="67077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTA</genome_strand>
        <mrna_strand>AGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTATGCCTCCTTAGTCCTGACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E298844" ref_strand="+" ref_description="SGN-E298844 [cLET-44-N11]">
      <seq>cagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccacaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactggatgcggaagattgcaggtttgtcctggtgaaattgtgattgtgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63650" stop="66975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63950" g_stop="63999" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="281" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66675" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="502" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E298844" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63950" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATC</genome_strand>
        <mrna_strand>CAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCACAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGGATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTGTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E374587" ref_strand="-" ref_description="SGN-E374587 [TUS-15-L1]">
      <seq>cccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataaggcgggtatttctctatatttcaatctctcataatatgagtgcccttgtgcactttttatcacaatttactttgctacatggaaacttgatgctgtttgcctccttagtcctgacgtaatatatttcctcaatttgcagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63675" stop="67400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63975" g_stop="63999" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="105" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="67108" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="679" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E374587" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63975" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="67108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAA</genome_strand>
        <mrna_strand>CCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E203915" ref_strand="+" ref_description="SGN-E203915 [cLEC-17-B12]">
      <seq>aaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="65495" stop="66994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="248" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="328" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="66694" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="488" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E203915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGG</genome_strand>
        <mrna_strand>TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E327056" ref_strand="+" ref_description="SGN-E327056 [cTOC-18-L17]">
      <seq>tggtgtggcgttgcttgactttgtcattttccctccccggtggttggttgctgaacacaccttccgtcctccatattatcatcgcaattgtatgagcgaatttatgggtctaatctatggcggatacgaggcaaaagctgatggttttcaccctggcggggcaagccttcacagctgcatgactcctcatggtcctgataccaaaacatttgaggcaaccattgcacttggaaatgaagctggtccacatagaatagctgataccatggctttcatgtttgagtcttgcctagtaccccgagtctgtccgtgggctcttgaatctccgtttatggatcacgattattaccaatgctggattggcttgaagtctcacttctcaggactatctatgaacgaagacaacgtcgatttgcagaaaggaaaacccatagaaaggtgaaatgctcattgttcacctagctcctgtagttcctcctaaagtgacttaaacttgtacataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="67013" stop="68846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67313" g_stop="67442" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84">
            <donor d_prob="0.331" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67527" g_stop="67610" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="214" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68257" g_stop="68546" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="504" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E327056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67313" e_stop="67442"/>
          <exon e_start="67527" e_stop="67610"/>
          <exon e_start="68257" e_stop="68546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAGGTTGTTTATCTCACTCTTGCATGAAGTCAATGTCAATTCTGGGGTTATTTCATACAATTTTTAATGCGGTTAAGCTTGTTTTAGGCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAGGTACAACTCCTGCTGTATTCCCCCCTTTTCTATGGCCATGCCCTTCCCGCATATGCGGCTTTATTTACAAGGAAATTTGTTCCTTTTAGTCCCTCCAATGTCAACAAAATTCTGATTTGGTCCTTGTAACAAACCCGAATTGCTCACTATGTTGATAAGAGAACTAAAACGTGATTACAATTTTAGAATTGTAATTGCAATACCCAAACTAGTGAATTACAATAGATATATGAAAATAACAAGTAACTAACGATAGAGATAAGAATGGAAGCTTAGACTCTAGAAGAAAAAGAGGATAGACAACCCATGAATCAGTGACCGCTACCCCTTTTAATGGACACCCACTACTCGGCCAGAACCCCAAATTAACCTTGTTTTCGGCCCAATAGCCCTTGCCAGCCCAGTAACTACTTGTGTTGACCTTGGTATTCATATTGGGTTGAACTTGGTACATAACAGTCCTTGTGTGATTTCCGATACACATTTAATCACAAGTAATATGTGCCCTTTTGATCCTTCCACTTCCGAATCATCACAAATTTAACGATGATCTTAAGTGCTGAACTATTTAATTGTTGATATATTATCTTAAATTTGTATTGTTACTCCACATTCGAGGGTAAAATTCTAAAAAATGTATTGACAGGCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAG</genome_strand>
        <mrna_strand>TGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG....................................................................................GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCACCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E609178" ref_strand="+" ref_description="SGN-E609178 [25181]">
      <seq>gccttcacagctgcatgactcctcatggccctgataccaaaacatatgaggcaaccattgcacttggaaatgaagctggtccacatagaatagctgataccatggcttttatgtttgagtcttgcctaataccccgagtctgtccgtgggcacttgaatctccgtttatggatcacgattattaccaatgctggattggcttgaagtctcacttctcaggactatctatgaacgaagacaacgttgatttgcagaaaggaaaacctatagaaaggtgaaatgctcattgttcagctagctcctgtagttcctcttaaagtgacttggcttgtacataaggagtcacgggcatgtaaaacataaaataaaccaatgttctatgaaattacgacgcaagtagaaatgtgttaccgtgatgatgttgtagagttgtagtttatggtgtattgtatgtatatatataaagatggaactatcatggaatacttgttgcaattacaagagcaatgaattatgatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="67261" stop="69100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67561" g_stop="67610" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68257" g_stop="68577" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="370" r_length="320" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68578" i_stop="68645" i_length="68">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68646" g_stop="68800" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="522" r_length="152" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E609178" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67561" e_stop="67610"/>
          <exon e_start="68257" e_stop="68577"/>
          <exon e_start="68646" e_stop="68800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAGGTACAACTCCTGCTGTATTCCCCCCTTTTCTATGGCCATGCCCTTCCCGCATATGCGGCTTTATTTACAAGGAAATTTGTTCCTTTTAGTCCCTCCAATGTCAACAAAATTCTGATTTGGTCCTTGTAACAAACCCGAATTGCTCACTATGTTGATAAGAGAACTAAAACGTGATTACAATTTTAGAATTGTAATTGCAATACCCAAACTAGTGAATTACAATAGATATATGAAAATAACAAGTAACTAACGATAGAGATAAGAATGGAAGCTTAGACTCTAGAAGAAAAAGAGGATAGACAACCCATGAATCAGTGACCGCTACCCCTTTTAATGGACACCCACTACTCGGCCAGAACCCCAAATTAACCTTGTTTTCGGCCCAATAGCCCTTGCCAGCCCAGTAACTACTTGTGTTGACCTTGGTATTCATATTGGGTTGAACTTGGTACATAACAGTCCTTGTGTGATTTCCGATACACATTTAATCACAAGTAATATGTGCCCTTTTGATCCTTCCACTTCCGAATCATCACAAATTTAACGATGATCTTAAGTGCTGAACTATTTAATTGTTGATATATTATCTTAAATTTGTATTGTTACTCCACATTCGAGGGTAAAATTCTAAAAAATGTATTGACAGGCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATT-T-TGTATATATATAAAGATGGAACTATCATATAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGA</genome_strand>
        <mrna_strand>GCCTTCACAGCTGCATGACTCCTCATGGCCCTGATACCAAAACATATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTTATGTTTGAGTCTTGCCTAATACCCCGAGTCTGTCCGTGGGCACTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTTGATTTGCAGAAAGGAAAACCTATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCTTAAAGTGACTT-GGCTTGTACATAAGGAGTCACGGGCATGTAAAACATAAAATAAAC....................................................................CAATGTTCTATGAAATTACGACGCAAGTAGAAATGTGTTACCGTGATGATG-T---TGTAGAGTTGTAGTTTATGGTGTATTGTATGTATATATATAAAGATGGAACTATCAT-GGAATACTTGTTGCAATTACAAGAGCAATGAATTATGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E203159" ref_strand="-" ref_description="SGN-E203159 [cLEB-3-F2]">
      <seq>gaaatgaagctggtccacatagaatagctgataccatggctttcatgtttgagtcttgcctagtaccccgagtctgtccgtgggctcttgaatctccgtttatggatcacgattattaccaatgctggattggcttgaagtctcacttctcaggactatctatgaacgaagacaacgtcgatttgcagaaaggaaaacccatagaaaggtgaaatgctcattgttcagctagctcctgtagttcctcctaaagtgacttaaacttgtacataaggagtcacaggcatgtaaaacatgaaataaaccctatgttagtatcagattgaaagtttagggtggcgatccaagcgcggatatagtggtaagatgaaaccaatgttctatgaaattgcgacgcaagtaaaaatgtgttaccgtgatgatgttgcatgtaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="67973" stop="131875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68273" g_stop="68710" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68711" i_stop="69086" i_length="376">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69087" g_stop="69106" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="458" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E203159" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68273" e_stop="68710"/>
          <exon e_start="69087" e_stop="69106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATTTTGTATATATATAAAGATGGAACTATCATATAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGATTTATGGCAACGTTTGATAGTAAGGGTGTGTTATTCAATTAATTTATGGCTGGATAAATTTAAATGTTATGAAAAATATTTTTTAATTGACTTATTTTCTTCAAATTAAGGAAAGTGATTTTCTTACACAAAGGAAATAATTTTCAAAACTGTGATTCAATCTCACCGCTCGGAAAATCTCAATTGATTGACTGTAATTATCACCTTATTGGTAAGTGTTTGATTCCTCATATTATAAGCCTTTTTGCGTTTTCAACTTCCCCTACCTCATTTTTAAACATAATAGCACAAAATAAAAATACCACA</genome_strand>
        <mrna_strand>GAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E342534" ref_strand="+" ref_description="SGN-E342534 [cTOF-8-J20]">
      <seq>acggattcagcttgacgggtctttcagccttggatacagagtagacgtcttgcttatgtaaaacataaacatgttatatcaggagttttgagacagttaagaatgcgtgcattggggaggctttgcacagaccagggagcaccaaatatagaagttttagaaaagctattcaacgcaattgatgaaaatgaggatgggcatctttcccgtactgaattaaaagctctggtagtaggaatccgtttggaggagataaacttacatgagaatgatgctgtagaaaaactgatgaaggacttcgatacttcacatgatcatcaagttgaaatgtccgagttcattgctggagttacaaaatggcttactgaggccaggggttccgaggctccttctcctgaagctggtcctgatacaatgaagtacctcgatgacttgcatgagcaaacaaggagagaacaccatttcttaggggatcaaagtgacgaaagtgttgagactgttgagaatcctagatcaactgcaattaaggctgttctactgcttttgctgggtactgtcattgctgccgtctntgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaaactccagtgaggcggtgtcagctattatctttgctagccggnaaaagttgagatctgcatcattaacattttctgagttgttgggagcagtgacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="73099" stop="75846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73399" g_stop="73416" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73417" i_stop="74319" i_length="903">
            <donor d_prob="0.561" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74320" g_stop="74465" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="164" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74466" i_stop="74542" i_length="77">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.446" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74543" g_stop="74819" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="441" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74896" g_stop="75198" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="745" r_length="304" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75525" g_stop="75546" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="767" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E342534" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73399" e_stop="73416"/>
          <exon e_start="74320" e_stop="74465"/>
          <exon e_start="74543" e_stop="74819"/>
          <exon e_start="74896" e_stop="75198"/>
          <exon e_start="75525" e_stop="75546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTCAGCTTGACGGGTTTGCATCTCAACTCTTAGAATATGTATACCGAAACATGTACAAGCTCCATGTTCTTTACTTCTTTTGTCTTTCCTGAAATATGTTGCTGTAGATCTCTTTCGGCTTTCTTTCACCTGTGCCCTTGTATGAATTAAATATGCTCTAGTCTTTGAAATCATTGGGCCACAAGGAGGATTTTGTGTACTTGTGCAAGTGATATTCCTGCTAGTATATGGCAGATTTTGTGTATCAAGATGCTTCTACTCAATGAGTGGCTGTCAATGTAGGTTCTGGTGTTAGTACTGACATCTGGACAAGCCATGCTGCAACGATAATGGCAGCATCTGTAACACCATTTCTTGTTGTCCAACTGCCACAGCTCCTCCATTCAACTTCAGGAAGACATTTATCTGTCTTGATTGGTCTTATCATTTCACTTACTCTGCTTGTTTCTTATTGCATCTATCAGGTACTGTGACATTGCCCATGTGTTTTTTTCTTTTATTCACTGTGGGCAATCTAATTTTCTTTGCAACTGCAATGATGTATCTGCAGAGATTTGCATTGACTACAGACTTTGGAGATGAATATCAATTTTTACAGTTTCTAGCTGAATTTCAAATAGGCAATAACAACAAGACCTATGATTGACCATGCTTTAAATAGTTTTTATCCCCACTATCCTGGATAATGGACTTTCCGCATAACCACCTGAGTTAAAATTGAATTCGTATCAGAAGATAACCTGATTACTCCTGTATACCTCTTCGTCTTCCAACAAGATGAAACAAATAAATATAAATCTTTGTCATTCTTTATACTAGGCTGGTTAATAAACCCACTTTTTAGTGTTTGAGATCACGAGGCCTGAAACTTATCTTCTTTGATGAAGTTGTTCTGAACTTCTAACTTCCAATGCAGGTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAAGTAAGTTTGAAATGATTTCTGCACAGTTCTAATCGGTTTTAGAATCTTGATCAATATGATGAAGGATTACATGACAGGCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAGGTTTGTTGAGTGTTCTGGCCTTCTCTATATAATTCATTGTCGTGACGATAGTGATAAAGTATAAACTTGCTTGCAGCAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACC-AACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGA</genome_strand>
        <mrna_strand>ACGGATTCAGCTTGACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAA.............................................................................GCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG............................................................................CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTNTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGNAAAAGTTGAGATCTGCATCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTTGGGAGCAGTGACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E273438" ref_strand="+" ref_description="SGN-E273438 [cLEN-3-D5]">
      <seq>attgatgaaaatgaggatgggcatctttcccgtactgaattaaaagctctggtagtaggaatccgtttggaggagataaacttacatgagaatgatgctgtagaaaaactgatgaaggacttcgatacttcacatgatcatcaagttgaaatgtccgagttcattgctggagttacaaaatggcttactgaggccaggggttccgaggctccttctcctgaagctggtcctgatacaatgaagtacctcgatgacttgcatgagcaaacaaggagagaacaccatttcttaggggatcaaagtgacgaaagtgttgagactgttgagaatcctagatcaactgcaattaaggctgttctactgcttttgctgggtactgtcattgctgccgtctttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaactccagtgaggcggtgtcagctattatctttgctagccggaaaaagttgagatctgcatcattaacattttctgagttgtatggagcagtgacaatgaacaatctcctttgtctatcagtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="74256" stop="75916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74556" g_stop="74819" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74896" g_stop="75198" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="567" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75525" g_stop="75616" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="659" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E273438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74556" e_stop="74819"/>
          <exon e_start="74896" e_stop="75198"/>
          <exon e_start="75525" e_stop="75616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAGGTTTGTTGAGTGTTCTGGCCTTCTCTATATAATTCATTGTCGTGACGATAGTGATAAAGTATAAACTTGCTTGCAGCAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTC</genome_strand>
        <mrna_strand>ATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG............................................................................CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E461959" ref_strand="+" ref_description="SGN-E461959 [cPRO-10-K11]">
      <seq>gttacaaaatggcttactgaggccaggggttccgaggcttcttctcctgaagctggtcctgatacaatgaagtacctcgatgacttgcatgagcaaacaaggagagaacaccatttcttaggggatcaaagtgacgaaagtgttgagactgttgagaatcctcgatcaactgtaattaaggctgttctactgctgttgctgggtactgtcattgccgccgtgtttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaactccagtgaggcggtgtcagctattatctttgctagccggaaaaagttgaggtctgcgtcattaacattttctgagttgtatggagcagtgactatgaacaatctcctttgtctatccgtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtctgaagtcttggttattctaattgtctgtgttgtcgtgggggtctttgcaagcgttcgtagcacctttcctctttggacttccttgctagcttttctactttaccccttctctcttgtacttgtatatgttcttgactacaaatttggttggtcttagacgactctttttgntgaacttgtatgcgtcttttgagctacggcacacttaaggcgctgntggacgtgttagtagaacttccgtaacttgaaaaactcagtgggattggtgtatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="74427" stop="76180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74727" g_stop="74819" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74896" g_stop="75198" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="396" r_length="303" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75525" g_stop="75861" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="727" r_length="331" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E461959" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74727" e_stop="74819"/>
          <exon e_start="74896" e_stop="75198"/>
          <exon e_start="75525" e_stop="75861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAGGTTTGTTGAGTGTTCTGGCCTTCTCTATATAATTCATTGTCGTGACGATAGTGATAAAGTATAAACTTGCTTGCAGCAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCA</genome_strand>
        <mrna_strand>GTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTTCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG............................................................................CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTCGATCAACTGTAATTAAGGCTGTTCTACTGCTGTTGCTGGGTACTGTCATTGCCGCCGTGTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGGTCTGCGTCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTATGGAGCAGTGACTATGAACAATCTCCTTTGTCTATCCGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTTCGTAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTTGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTA------GACGACTCTTTTTGNTGAACTTGTATGCGTCTTTTGAGCTACGGCACACTTAAGGCGCTGNTGGACGTGTTAGTAGAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E430493" ref_strand="+" ref_description="SGN-E430493 [STM-53-D14]">
      <seq>gttacaaaatggcttactgaggccaggggttccgaggcttcttctcctgaagctggtcctgatacaatgaagtacctcgatgacttgcatgagcaaacaaggagagaacaccatttcttaggggatcaaagtgacgaaagtgttgagactgttgagaatcctcgatcaactgtaattaaggctgttctactgctgttgctgggtactgtcattgccgccgtgtttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaactccagtgaggcggtgtcagctattatctttgctagccggaaaaagttgaggtctgcgtcattaacattttctgagttgtatggagcagtgactatgaacaatctcctttgtctatccgtcttcctggctctcgtctatatcagaggattgacatgggacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="74427" stop="75912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74727" g_stop="74819" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74896" g_stop="75198" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="396" r_length="303" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75525" g_stop="75612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="484" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E430493" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74727" e_stop="74819"/>
          <exon e_start="74896" e_stop="75198"/>
          <exon e_start="75525" e_stop="75612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAGGTTTGTTGAGTGTTCTGGCCTTCTCTATATAATTCATTGTCGTGACGATAGTGATAAAGTATAAACTTGCTTGCAGCAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCT</genome_strand>
        <mrna_strand>GTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTTCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG............................................................................CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTCGATCAACTGTAATTAAGGCTGTTCTACTGCTGTTGCTGGGTACTGTCATTGCCGCCGTGTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGGTCTGCGTCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTATGGAGCAGTGACTATGAACAATCTCCTTTGTCTATCCGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E425993" ref_strand="-" ref_description="SGN-E425993 [STM-45-J24]">
      <seq>taggggatcaaagtgacgaaagtgttgagactgttgagaatcctcgatcaactgtaattaaggctgttctactgctgttgctgggtactgtcattgccgccgtgtttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaactccagtgaggcggtgtcagctattatctttgctagccggaaaaagttgaggtctgcgtcattaacattttctgagttgtatggagcagtgactatgaacaatctcctttgtctatccgtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtctgaagtcttggttattctaattgtctgtgttgtcgtgggggtctttgcaagcgttcgtagcacctttcctctttggacttccttgctagcttttctactttaccccttctctcttgtacttgtatatgttcttgactacaaatttggttggtcttagacgactctttttgttgaacttgtatgcgtcttttgagctacggcacacttaagtcgctcttggacgtgctagtagaacttcagtaacttgataacttaagtgatttggttgtatttattaaaaaaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="74621" stop="76194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74921" g_stop="75198" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75525" g_stop="75885" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="633" r_length="355" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E425993" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425993" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74921" e_stop="75198"/>
          <exon e_start="75525" e_stop="75885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTT</genome_strand>
        <mrna_strand>TAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTCGATCAACTGTAATTAAGGCTGTTCTACTGCTGTTGCTGGGTACTGTCATTGCCGCCGTGTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGGTCTGCGTCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTATGGAGCAGTGACTATGAACAATCTCCTTTGTCTATCCGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTTCGTAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTTGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTA------GACGACTCTTTTTGTTGAACTTGTATGCGTCTTTTGAGCTACGGCACACTTAAGTCGCTCTTGGACGTGCTAGTAGAACTTCAGTAACTTGATAACTTAAGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E623732" ref_strand="+" ref_description="SGN-E623732 [88828]">
      <seq>tttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactgggcgaccaactccaagtgaggcgggtcagctataatcttggctacccggaaaaagtgagggtctgcgtcattaacatttctgagtgtattggagcatgactatgaacaatctccttgtctatccgtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtctgaagtctggggtaatcctaatggtctggttggtcgtgggggttcttggcaagcgttcgtaacacctttcctcttgggacttccttgctagcttttctactttaccccttctctcttgtacttgtatatgttcttgactacaaatttggttggtcttagacgactctttttgttgaacttgtatgcgtcttttgagctacggcacacttaagtcgctcttggacgtgctagtagaacttcagttaacttgataaacttaagtgatttgggttgtatttatttactttacaatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="74725" stop="76202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75025" g_stop="75198" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="0.84"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75525" g_stop="75861" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="505" r_length="331" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E623732" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75025" e_stop="75198"/>
          <exon e_start="75525" e_stop="75861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACT-GGCGACCAACTCC-AGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTA-TGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCT-TGGTTATTCTAATTGTCTGTGTTGTCGTGGGGG-TCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCA</genome_strand>
        <mrna_strand>TTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGGCGACCAACTCCAAGTGAGGCGG-GTCAGCTATAATCTTGGCTACCCGGAAAAAGTGAGGGTCTGCGTCATTAACA-TTTCTGAG......................................................................................................................................................................................................................................................................................................................................-TGTATTGGAGCA-TGACTATGAACAATCTCC-TTGTCTATCCGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTGGGGTAATCCTAATGGTCTGGTTGGTCGTGGGGGTTCTTGGCAAGCGTTCGTAACACCTTTCCTCTTGGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTTGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTA------GACGACTCTTTTTGTTGAACTTGTATGCGTCTTTTGAGCTACGGCACACTTAAGTCGCTCTTGGACGTGCTAGTAGAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E713727" ref_strand="+" ref_description="SGN-E713727 [FB09BH09]">
      <seq>gtgacaatgaacaatctcctttgtctatcagtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtctgaagtcttggttattctaattgtctgtgttgtcgtgggggtctttgcaagcgtccgaagcacctttcctctttggacttccttgctagcttttctactttaccccttctctctcgtacttgtatatgttcttgactacaaatttggttggtcttagtcttggacgactctttttgttgaacttgtatgcatcttttgagctacggcacactttagtcgctcttggattttctagtagaacttcagtaacttgaaaactgaagtcatttgtttacttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggggggggcccccccccccttttccccaaaggaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="75237" stop="131888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75537" g_stop="75896" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75897" i_stop="76411" i_length="515">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76412" g_stop="76428" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="377" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76429" i_stop="77182" i_length="754">
            <donor d_prob="0.632" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77183" g_stop="77223" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="417" r_length="40" r_score="0.488"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77224" i_stop="77305" i_length="82">
            <donor d_prob="0.760" d_score="0.49"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77306" g_stop="77336" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="448" r_length="31" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E713727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75537" e_stop="75896"/>
          <exon e_start="76412" e_stop="76428"/>
          <exon e_start="77183" e_stop="77223"/>
          <exon e_start="77306" e_stop="77336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACAATTTCCCACTGCTGTTTATTGGTTACAGGTTTTGAGTGTTCTCTCTAGTCTCTAGTCAATCATCTCATTATTGTTGAGCAGACTGCTTCTGCGCTTCCATTTATCTCTTTAAAAGTTCTGATGTACTTCTCTGCTAAGCACACTTCTTTTTAACCCCTCTCAAGGAACTCCAACTTTTTGCTCCCTTGGTACTCGAATTCACGACTTTCGGGGGATTGAAAGTGAGGAGTGCTTACGTACTGTTTTGCACACTTAAACCAGAAGGGACACTCATTCCGAAACGGCTTGTCGTTTAATAACCTAATTGATCATAGGTCATTAGAATGATAGATCAGCCCAACCTTGGATGGATTGCACTAGCAGATCAAATGGGGAACGAGTTAATAAATGAACAAGTCATTAGCCCACTAAACTTGAGAGTTAAGTCATATTTTTATAGGTTAATTTTGCTACATGTGACCTGTAGGCAAGAGTAAAGCATTTAGGCATCTAATTTTCTGCCTATTCTAATAAACAGACAGAGACACAACAAGTGCGAAACATATTTTGTTCAATACTTGATTTAAACAAGTTACTACAGCTAGAATTCTCAGCATTTCACTTGCCTCGTGGAACTGAAGACATGTGAAAATATAATAATCTAACTCGCCACGCAGAAGAGGGTAACAGTTTACAGAAGTTAAGGTACCAGAAAGACCTGAATCCAGACATCCTAGTTGAAAATTCCAATCAAAATCTCATTCGTCATCCCATCATGGACGCAGAGTCCGGAGGTTAATCCAACCCTCTGGTATGAGGCATATTTTACATGTGAGTAAAGACATACATCAGAAGAAACGTTGTTCTACCACAGAGTGGAATGAAAGCCCTGCAGAAACTAACACCTTAGGACTTGAACTAGCCATCCTACGAAGAGCAGAAATTCTCCCGGAAGAAGCACAACCATGTGTAATGACTAACTTCTACAGCTTCAGATTGAGATCAATGTTTCCTCCTACTTCAACATGGCAATTGCGTTTGTTTGTTCCTTCTTGGCTGATTTGTACCTTGGCAGTTGGGAAGAATCCATAGATGGATTGTTGAACTGATTTGCTTAGGGCTGAGCTTGTTGTAGTAGGTTCTTCAGCAACTCCCTGTGGATTTAACCAAGGCAAGAAGACTGTTACACCAAAATTGAGATACCAATAGATAAAGGCATCAAAACATAAAAGTGTAGACCTTTGTTCTCACCTGACAAGTCACTGATTCCAATCTAAATCTCTCTAGACTCTGAAGGTTTGAATTAGATGAATGCTGATATGGAGAAGCGGCTGTAGGAGGAGCCAACGTGAGAAAATCTCCATTGAGAGCTTTATTTTGCCTGATAACATCCCTTGGTTTGGACTCGGATAGAGTCCTTGATCCTGAAGGAGCTTCTCTGGAGAAAAGAGTAAAAAAAAA</genome_strand>
        <mrna_strand>GTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAG-GGGGGGGGGGGGGGCCCCC..................................................................................CCCCCCTTTTCCCCAAAGGAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E225990" ref_strand="+" ref_description="SGN-E225990 [cLEL-31-O24]">
      <seq>ttttttttttttttttttgagagaacactcaaaacctgtaaccaatagacagcagtgggaaattgtaagtaaacaaatgacttcagttttcaagttactgaagttctactagaaaatccaagagcgactaaagtgtgccgtagctcaaaagatgcatacaagttcaacaaaaagagtcgtccaagactaagaccaaccaaatttgtagtcaagaacatatacaagtacgagagagaaggggtaaagtagaaaagctagcaaggaagtccaaagaggaaaggtgcttcggacgcttgcaaagacccccacgacaacacagacaattagaataaccaagacttcagacgagaagtcccatgtcaatcctctgatatagacgagagccaggaagactgatagacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="131870" stop="75255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75959" g_stop="75555" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E225990" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75959" e_stop="75555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGACTAGAGACTAGAGAGAACACTCAAAACCTGTAACCAATAAACAGCAGTGGGAAATTGTAAGTAAACAAATGACTTCAGTTTTCAAGTTACTGAAGTTCTACTAGAAAATCCAAGAGCGACTAAAGTGTGCCGTAGCTCAAAAGATGCATACAAGTTCAACAAAAAGAGTCGTCCAAGACTAAGACCAACCAAATTTGTAGTCAAGAACATATACAAGTACGAGAGAGAAGGGGTAAAGTAGAAAAGCTAGCAAGGAAGTCCAAAGAGGAAAGGTGCTTCGGACGCTTGCAAAGACCCCCACGACAACACAGACAATTAGAATAACCAAGACTTCAGACGAGAAGTCCCATGTCAATCCTCTGATATAGACGAGAGCCAGGAAGACTGATAGACAAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGAGAGAACACTCAAAACCTGTAACCAATAGACAGCAGTGGGAAATTGTAAGTAAACAAATGACTTCAGTTTTCAAGTTACTGAAGTTCTACTAGAAAATCCAAGAGCGACTAAAGTGTGCCGTAGCTCAAAAGATGCATACAAGTTCAACAAAAAGAGTCGTCCAAGACTAAGACCAACCAAATTTGTAGTCAAGAACATATACAAGTACGAGAGAGAAGGGGTAAAGTAGAAAAGCTAGCAAGGAAGTCCAAAGAGGAAAGGTGCTTCGGACGCTTGCAAAGACCCCCACGACAACACAGACAATTAGAATAACCAAGACTTCAGACGAGAAGTCCCATGTCAATCCTCTGATATAGACGAGAGCCAGGAAGACTGATAGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E226278" ref_strand="+" ref_description="SGN-E226278 [cLEL-31-O24]">
      <seq>tttttttttttttttttagagagaacactcaaaacctgtaaccaataaacagcagtgggaaattgtaagtaaacaaatgacttcagttttcaagttactgaagttctactagaaaatccaagagcgactaaagtgtgccgtagctcaaaagatgcatacaagttcaacaaaaagagtcgtccaagactaagaccaaccaaatttgtagtcaagaacatatacaagtacgagagagaaggggtaaagtagaaaagctagcaaggaagtccaaagaggaaaggtgcttcggacgcttgcaaagacccccacgacaacacagacaattagaataaccaagacttcagacgagaagtcccatgtcaatcctctgatatagacgagagccaggaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="131870" stop="75267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75959" g_stop="75567" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E226278" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75959" e_stop="75567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGACTAGAGACTAGAGAGAACACTCAAAACCTGTAACCAATAAACAGCAGTGGGAAATTGTAAGTAAACAAATGACTTCAGTTTTCAAGTTACTGAAGTTCTACTAGAAAATCCAAGAGCGACTAAAGTGTGCCGTAGCTCAAAAGATGCATACAAGTTCAACAAAAAGAGTCGTCCAAGACTAAGACCAACCAAATTTGTAGTCAAGAACATATACAAGTACGAGAGAGAAGGGGTAAAGTAGAAAAGCTAGCAAGGAAGTCCAAAGAGGAAAGGTGCTTCGGACGCTTGCAAAGACCCCCACGACAACACAGACAATTAGAATAACCAAGACTTCAGACGAGAAGTCCCATGTCAATCCTCTGATATAGACGAGAGCCAGGAAGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAGAGAGAACACTCAAAACCTGTAACCAATAAACAGCAGTGGGAAATTGTAAGTAAACAAATGACTTCAGTTTTCAAGTTACTGAAGTTCTACTAGAAAATCCAAGAGCGACTAAAGTGTGCCGTAGCTCAAAAGATGCATACAAGTTCAACAAAAAGAGTCGTCCAAGACTAAGACCAACCAAATTTGTAGTCAAGAACATATACAAGTACGAGAGAGAAGGGGTAAAGTAGAAAAGCTAGCAAGGAAGTCCAAAGAGGAAAGGTGCTTCGGACGCTTGCAAAGACCCCCACGACAACACAGACAATTAGAATAACCAAGACTTCAGACGAGAAGTCCCATGTCAATCCTCTGATATAGACGAGAGCCAGGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E464294" ref_strand="+" ref_description="SGN-E464294 [cPRO-17-H7]">
      <seq>tgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatctgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttgtcagacaaaataaaactctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagtgtctagagagatttacattggaatcagtgaattgtcagggagttgctgaagaacctactacaacaagctcagccctaagcagatcagttcaacaatccatctatggattcttcccaactgccaaggtacaaatcagccaagaaggaacaaacaaacgtaattgccacgttgaagtaggaggaaacgttgatctcaatctgaagctgtagaagttagtcattacacttggttgcgcttcttccgggagaaattctgtgtatctcttcgtgagatggctagttcaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="77853" stop="76485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77553" g_stop="77394" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="347" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77029" g_stop="76814" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="563" r_length="216" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E464294" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77553" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGCAATTGCCATGTTGAAGTAGGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGTGCTTCTTCCGGGAGAATTTCT</genome_strand>
        <mrna_strand>TGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATCTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTGTCAGACAAAATAAAACTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGTGTCTAGAGAGATTTACATTGGAATCAGTGAATTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAGATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGTAATTGCCACGTTGAAGTAGGAGGAAACGTTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACTTGGTTGCGCTTCTTCCGGGAGAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E553998" ref_strand="+" ref_description="SGN-E553998 [cTSC-2-O14]">
      <seq>gagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcagggagttgctgaagaacctactacaacaagctcagccctaagcaaatcagttcaacaatccatctatggattcttcccaactgccaaggtacaaatcagccaagaaggaacaaacaaacggcattgccatgttgaagtaagaggaaacattgatctcaatctgaagctgtagaagttagtcattacacatggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79189" stop="76535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78697" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="480" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="667" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77029" g_stop="76835" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="862" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E553998" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGCAATTGCCATGTTGAAGTAGGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGT</genome_strand>
        <mrna_strand>GAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGGCATTGCCATGTTGAAGTAAGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E554311" ref_strand="+" ref_description="SGN-E554311 [cTSC-3-O14]">
      <seq>aagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcaagaagttgctgaagaacctactacaacaagctcagccctaagcaaaatcagttcaacaatccaatctatggattcttcccaactgccaaggtacaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79188" stop="76634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78697" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="480" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="667" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77029" g_stop="76934" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="765" r_length="98" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E554311" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGC-AAATCAGTTCAACAATCC-ATCTATGGATTCTTCCCAACTGCCAAGGTACAAATC</genome_strand>
        <mrna_strand>AAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAA.................................................................................................GAAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAAATCAGTTCAACAATCCAATCTATGGATTCTTCCCAACTGCCAAGGTACAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E200865" ref_strand="+" ref_description="SGN-E200865 [cLEC-5-M3]">
      <seq>tttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcagggagttgctgaagaacctactacaacaagctcagccctaagcaaatcagttcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="78859" stop="76672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78559" g_stop="78462" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="268" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="455" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77029" g_stop="76972" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="513" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E200865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78559" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAAT</genome_strand>
        <mrna_strand>TTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E330449" ref_strand="+" ref_description="SGN-E330449 [cTOD-4-F17]">
      <seq>tacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcagggagttgctgaagaacctactacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79155" stop="76704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78855" g_stop="78697" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="446" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="633" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77029" g_stop="77004" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="659" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E330449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78855" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="77004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAAC</genome_strand>
        <mrna_strand>TACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E331143" ref_strand="+" ref_description="SGN-E331143 [cTOD-6-B10]">
      <seq>tacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaagatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79155" stop="76870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78855" g_stop="78697" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="276" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="446" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77170" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="590" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E331143" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78855" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCT</genome_strand>
        <mrna_strand>TACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAAGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E312698" ref_strand="+" ref_description="SGN-E312698 [cTOA-8-E5]">
      <seq>atctgtctgccttagtttttgatggtttccgtcccaagactttagagtcatcaaaaccaatgaacatgggtggaggggagttaagttggtcgtctgtttcgggtccagggagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79298" stop="77096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78998" g_stop="78697" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="419" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77396" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="587" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E312698" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78998" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAA</genome_strand>
        <mrna_strand>ATCTGTCTGCCTTAGTTTTTGATGGTTTCCGTCCCAAGACTTTAGAGTCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E242189" ref_strand="+" ref_description="SGN-E242189 [cLED-37-I9]">
      <seq>taaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79072" stop="77096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78772" g_stop="78697" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="193" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77396" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="361" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E242189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78772" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAA</genome_strand>
        <mrna_strand>TAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E689201" ref_strand="+" ref_description="SGN-E689201 [t3_tus_80_I18]">
      <seq>cctttatacacaacaatatcagcaaccttcttgttcttcatctttgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccataattattattcgtgtaattatttacctctgtggcctgaagatgtgaaggtaatttcttttattctgcgtgttagtcactaatatatagaaatcaattttcataatgctctcttctgtcaaaaggctgaaatacactttacctggatatcctattgattctagtaaggatcttagtttgtacagaaccgttatgtgaaatgttcttttaattataaagatggatacatgtcatttacatcctatgtgttgaacatctcttttcttcgaacttgatagtagaaaacattattacacaccttctactgccaaaacaaggtaaaggagcttctctttgtggccctaaactaatattcagatacttgatgaaaagagcatcttaaaagcgagaagagatgctcactcagctcatgttacaccctccactccccacaaattgtaggatagctccatagttgtccctttgttgctcaaacagttctctgtgttctttcatctaaacaagctatctgaggataatgacttaaaaaccaagagacttgtcacaatcacaattcacaaatgtgttacacatgtatgcaatcattatttcagtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79036" stop="77616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78741" g_stop="78697" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="0.82"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="77916" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="710" r_length="664" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E689201" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78741" e_stop="78697"/>
          <exon e_start="78578" e_stop="77916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAT-CACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTC-GTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</genome_strand>
        <mrna_strand>CCTTTATACACAACAATATCAGCAACCTTCTTGTTCTTCATCTTTG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCATAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCTATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCATGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCTGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACTTGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E323337" ref_strand="+" ref_description="SGN-E323337 [cTOC-10-I11]">
      <seq>aagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaaggtaatttcttttattctgcgtgttagtcactaatatatagaaatcaattttcataatgctctcttctgtcaaaaggctgaaatacactttacctggatatcctattgattctagtaaggatcttagtttgtacagaaccgttatgtgaaatgttcttttaattataaagatggatacatgtcatttacatccaatgtgttgaacatctcttttcttcgaacttgatagtagaaaacattattacacaccttctactgccaaaacaaggtaaaggagcttctctttgtggccctaaactaatattcagatacttgatgaaaagagcatcttaaaagcgagaagagatgctcactcagctcaggttacaccctccactccccacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79039" stop="77776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78739" g_stop="78697" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78076" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="546" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E323337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78739" e_stop="78697"/>
          <exon e_start="78578" e_stop="78076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAAT</genome_strand>
        <mrna_strand>AAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E247243" ref_strand="+" ref_description="SGN-E247243 [cLEF-46-B6]">
      <seq>gctactagtagaggatcgaaaaaagtgaagcagaaaaaaataccacagagaggacttggtgttgctcaacttgaaaggattataatggaaggggagaaaaaacatgaaaaagatgcaaactttcaaacacctaatgttttggtaccaaattcagttcattctaccaaaactatgtcaaaatgcttagctgttgaaggttctagttttaggcctagttcaatcactttaccaccaccatcaacaatggatctgctttcgaaaaatagtgtctttagaccagatctgtctgccttagttcttgatggtttacgtcccaagactttacaatcatcaaaaccaatgaacatgggtggaggggagttaagttggtcgtctgtttcgggtccagggagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79578" stop="78449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79278" g_stop="78749" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E247243" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79278" e_stop="78749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACGAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAAAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTAGAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAG</genome_strand>
        <mrna_strand>GCTACTAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAGAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTATAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTACGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E540600" ref_strand="-" ref_description="SGN-E540600 [TUS-60-P10]">
      <seq>gagcaggtagttatctgtttaactctcagcctgccccgccgctattacaacaattgttcactcaaaatcagtttttgtctcagaggggaccccttcagtccagttactcaccttcgattcgtgcatggatagatccatcagcgattgctatcgccacagctgatccaattcaccaaaaccaaaaccatcatcaagctgtgtttcctatgtattcaacatcactttctggcatcggattcgcctcagaattaggcggattctctggctttcgcattcctacacgaatccaaggtgaaatagaggaggagcatgatggtgtttccgacaaaccatcctctgcttcctctgattctcgtcattgaatcagctcggaaacacaatctcccattataacctgacaggaacaagtactatatttgaagatggaaatgggaaaagacaagtcagggaaagcgcgataatccatttttatcgagtctgattcagtgagaatgcaccgcggaagaagaatcctgagcatagtttcaggttttttttctaagattaaatagcggtgtaatgttcatgtataagtgtgtttttctgttgctaagttgttgttgttgttgttgttgtgtgcttattatcttcagttcattagaacaagtaattttctcttgaatgacaattattatcaacctgattgatttggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96309" stop="94936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96009" g_stop="95609" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95236" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="694" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E540600" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96009" e_stop="95609"/>
          <exon e_start="95527" e_stop="95236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGG-TTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGTAT</genome_strand>
        <mrna_strand>GAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG.................................................................................GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E218155" ref_strand="-" ref_description="SGN-E218155 [cLEL-23-J1]">
      <seq>cctctgattctcgtcattgaagcagctcggaaacgcaatctcccattataacctgacaggaccaagtactatatttgaagatggaagtggcaaaagtcaagtcagggacagcgcgataatcccttttgatcgagtctgattcagtgagaatgcaccgcggaaaaagaatcctgagcatagtctcaggtttttttctaggattaaataacggcgaaatgatcaagtacaagtgtgtttttctgtggctaagaccatgttgttgttgttgatgtgtgcttattagcatccgttcattagaacaagtaaagttctcttgaatgccaatggttatcagcctgattgatttggttacaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="95967" stop="94931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95667" g_stop="95609" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95238" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="349" r_length="290" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="369"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E218155" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95667" e_stop="95609"/>
          <exon e_start="95527" e_stop="95238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</genome_strand>
        <mrna_strand>CCTCTGATTCTCGTCATTGAAGCAGCTCGGAAACGCAATCTCCCATTATAACCTGACAG.................................................................................GACCAAGTACTATATTTGAAGATGGAAGTGGCAAAAGTCAAGTCAGGGACAGCGCGATAATCCCTTTTGATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAAAAGAATCCTGAGCATAGTCTCAGGTTTTTTTCTAGGATTAAATAACGGCGAAATGATCAAGTACAAGTGTGTTTTTCTGTGGCTAAGACCATGTTGTTGTTGTTGATGTGTGCTTATTAGCATCCGTTCATTAGAACAAGTAAAGTTCTCTTGAATGCCAATGGTTATCAGCCTGATTGATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E230431" ref_strand="-" ref_description="SGN-E230431 [cLEL-35-O17]">
      <seq>gattctcgtcattgaatcagctcggaaacacaatctcccattataacctgacaggaacaagtactatatttgaagatggaaatgggaaaagacaagtcagggaaagcgcgataatccatttttatcgagtctgattcagtgagaatgccccgcggaagaagaatcctgagcatagtttcaggtttttttctaagattaaatagcggtgtaatgttcatgtataagtgtgtttttctgttgctaagttgttgttgttgttgttgttgtgtgcttattatcttcagttcattagaacaagtaattttctcttgaatgacaattattatcaacctgattgatttggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="95962" stop="94931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95662" g_stop="95609" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95238" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="344" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="361"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E230431" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230431" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95662" e_stop="95609"/>
          <exon e_start="95527" e_stop="95238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</genome_strand>
        <mrna_strand>GATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG.................................................................................GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCCCCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E230931" ref_strand="-" ref_description="SGN-E230931 [cLEL-35-O17]">
      <seq>agcatgatggtgtttccgacaaaccattcctctgcttcctctgattctcgtcattgaatcagctcggaaacacaactctcccattataacctgacaggaacaagtactatatttgaagatggaaatgggaaaagacaagtcagggaaagcgcgataatccatttttatcgagtctgattcagtgagaatgcaccgcggaagaagaatcctgagcatagtttcaggtttttttctaagattaaatagcggtgtaatgttcatgtataagtgtgtttttctgttgctaagttgttgttgttgttgttgttgtgtgcttattatcttcagttcattagaacaagtaattttctcttgaatgacaattattatcaacctgattgatttggcaaaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96003" stop="94932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95703" g_stop="95609" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95240" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="385" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="404"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E230931" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230931" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95703" e_stop="95609"/>
          <exon e_start="95527" e_stop="95240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGATGGTGTTTCCGACAAACCA-TCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAA-TCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTG</genome_strand>
        <mrna_strand>AGCATGATGGTGTTTCCGACAAACCATTCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAACTCTCCCATTATAACCTGACAG.................................................................................GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E540596" ref_strand="+" ref_description="SGN-E540596 [TUS-60-P6]">
      <seq>gttttatgcctcattctttagattctgatgcgatttctgataccatcaaatcatttttcccaatgggaggtagtggttcaaatgaaggtaattctttccagagttttcaacaacataatttgatgtcaagaagccaagatttgaagctttctttacaatcttttcaagatccacaagctcagtttgaagcatcaaatttctttactggatttgatgcttcagtgtggcctcagcaccagcagcagccggttgaacttggtcgactggcggctgctcgtggagacattggtggcggggcaattgctggagcaggtagttatctgtttaactctcagcctgccccgccgctattacaacaattgttcactcaaaatcagtttttgtctcagaggggaccccttcagtccagttactcaccttcgattcgtgcatggatagatccatcagcgattgctatcgccacagctgatccaattcaccaaaaccaaaaccatcatcaagctgtgtttcctatgtattcaacatcactttctggcatcggattcgcctcagaattaggcggattctctggctttcgcattcctacacgaatccaaggtgaaatagaggaggagcatgatggtgtttccgacaaaccatcctctgcttcctctgattctcgtcattgaatcagctcggaaacacaatctcccattataacctgacaggaacaagtactatatttgaagatggaaatgggaaaagancagtcagggaaagcgcgataatccatttttatcgagtctgattcagtgagaatgcaccgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96615" stop="95126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96315" g_stop="95609" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95426" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="809" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E540596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96315" e_stop="95609"/>
          <exon e_start="95527" e_stop="95426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGA</genome_strand>
        <mrna_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG.................................................................................GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGANCAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E548412" ref_strand="+" ref_description="SGN-E548412 [TUS-60-P10]">
      <seq>gttttatgcctcattctttagattctgatgcgatttctgataccatcaaatcatttttcccaatgggaggtagtggttcaaatgaaggtaattctttccagagttttcaacaacataatttgatgtcaagaagccaagatttgaagctttctttacaatcttttcaagatccacaagctcagtttgaagcatcaaatttctttactggatttgatgcttcagtgtggcctcagcaccagcagcagccggttgaacttggtcgactggcggctgctcgtggagacattggtggcggggcaattgctggagcaggtagttatctgtttaactctcagcctgccccgccgctattacaacaattgttcactcaaaatcagtttttgtctcagaggggaccccttcagtccagttactcaccttcgattcgtgcatggatagatccatcagcgattgctatcgccacagctgatccaattcaccaaaaccaaaaccatcatcaagctgtgtttcctatgtattcaacatcactttctggcatcggattcgcctcagaattaggcggattctctggctttcgcattcctacacgaatccaaggtgaaatagaggaggagcatgatggtgtttccgacaaaccatcctctgcttcctctgattctcgtcattgaatcagctcggaaacacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96615" stop="95329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96315" g_stop="95629" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E548412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96315" e_stop="95629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAAT</genome_strand>
        <mrna_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E289413" ref_strand="+" ref_description="SGN-E289413 [cLET-3-M23]">
      <seq>ttttatgcctcattctttagattctgatgcgatttctgataccatcaaatcatttttcccaatgggaggtagtggttcaaatgaaggtaattctttccagagttttcaacaacataatttgatgtcaagaagccaagatttgaagctttctttacaatcttttcaagatccacaagctcagtttgaagcatcaaatttctttactggatttgatgcttcagtgtggcctcagcaccagcagcagccggttgaacttggtcgactggcggctgctcgtggagacattggtggcggggcaattgctggagcacgtagttatctgtttaactctcagcctgccccgccgctattacaacaattgttcactcaaaatcagtttttgtctcagaggggaccccttcagtccagttactcaccttcgattcgtgcatggatagatccatcagcgattgctatcgccacagctgatccaattcaccaaaaccaaaaccatcatcaagctgtgtttcctatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96614" stop="95499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96314" g_stop="95799" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E289413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96314" e_stop="95799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTA</genome_strand>
        <mrna_strand>TTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCACGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="105203" stop="106588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105203" g_stop="105206" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="84" r_length="3" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105207" i_stop="105507" i_length="301">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105508" g_stop="106275" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="848" r_length="764" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105203" e_stop="105206"/>
          <exon e_start="105508" e_stop="106275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTCTTAGACAAGTCCTTAGCATTCATCATTGCATATTAGATAGAATAAAAGCGGAAAATTTAAAACTTTTCATTTTAAGTTCAACTTCACGACATATATCAAAATAAAAGCTAACTTGTCTCACATTGACATTTAGACATAAGAGTATGAAAATTGAGATTTAGACTTACATCATTGCAAGTCTTATAAAATAGACACAACGTAGTCCTTGAAATAGGAGAAGTGGAACAATGCCTTTCAATATAAGCAAAACAACTAAAGATAGAATTATAGGGTTTTGTCCTCGGACTTGAGGATTCACATGTTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGGTTGTAATAAATTTTTCAGAAACATGAAATAACTGAGATTTATAGAACCAGTAAGTAAGATGAACATAAATTTATTTGTAAAAAATAATTGAATCTGTAAAAACTTACCAGAATCTGGAATACTCTTTTT--T-ATCTTGAAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTTATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTGTAGATACCAAAAACTCTATTGTCAGCGAATCAAGCCACAGCAGGAAAGTACACGAAGAAATATGTG-TTTAGAAGAAGAAGGAAGATCAGAAAATTCGTAATAAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAA-TTTTAAATATAACGGAAATT-AAACGGGTCACGTGCGCGGATTCGAGTCGGGTCGGATTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATAAAATAATTAATTGAAAATAATTTTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCTAAAAAATAATCTCTCGATCATTTGCCAAAGCTGTAGCCG</genome_strand>
        <mrna_strand>A-AG.............................................................................................................................................................................................................................................................................................................ATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAA--TTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAAAAAAT-ATCTCTCGATCATTTGCC-AAGTCGAAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="108712" stop="107732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108387" g_stop="108032" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="395" r_length="356" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108387" e_stop="108032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCATAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGCCAAAAAAAAGTTGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGCTGAAGATGATCCTACCAAAGACAAAAAGAAAAAAAAGTCCAACGGGTAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</genome_strand>
        <mrna_strand>CTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="108686" stop="107760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108387" g_stop="108060" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="363" r_length="328" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108387" e_stop="108060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCATAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGCCAAAAAAAAGTTGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGCTGAAGATGATCCTACCAAAGACAAAAAGAAAAAAAAGTCCAACGGGTAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>CTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E206134" ref_strand="+" ref_description="SGN-E206134 [cLEC-29-D14]">
      <seq>agcaatgctctctttcgctttagtccatcttcatccttcttcttccccaaacccacagttccattttccccacaaaaatcaaattctgccaattcaatcactcaacttttcaccatttactgtaatacccacaaaattgctgagtaaaccctccttctcccgcttattatcttcggtatcgtcgtcttctttggttgctgatgactttcaagtggaattgggtcggttattgtctttgttgccggaggaaatgcggcgaggagttagcgaacacccggaatattccaatttaattgaggtggttatggacttaggtcgtaagccacttgctcgcttcccttctggagatttcatcttatccgatcaaccgattactttgggtgatcttcaacaagctacctcgcaggttggtgactttgcagttgacaatagagctggcattagcagaactttacaccgaattagtgctattagaaatcggaaaggtgcaattattggtttaacttgtcgagttggtcgtgcaatatctggaagtgcaaactcattgcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="124766" stop="127431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125066" g_stop="125471" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125472" i_stop="126986" i_length="1515">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126987" g_stop="127131" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="551" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E206134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125066" e_stop="125471"/>
          <exon e_start="126987" e_stop="127131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAGGTTAGAATTAATTAAATGCAGCACCCATTTCACCTTGAGATATATGTGTGTATATATACATGAGCAGAGGTAGGGTATCAGAAGGGGATTCGAAACCCTTAATTGTAAAATTACACTATATATATAAAAGATTATAGTAAATCTTGAATTTTTGTAGTAAGAATTCTAACTCTACCACTTATTCTGTATACATGGTTATAGAATAGGCATTATACATAAACATACCTTTAACTTGGCTTCATCGAACAAATATGACTTTTAACTTAGGGTGTACAACTGTACACTTAAACTCATATAAAATTGAATAAATAAACACATTCATTCTGAATGAAGTCCTACGTGGTGATTTTGTATCATGTGGCGTCCTATGTGTATTATGCCACGTAGGACGTATGTGTCTACTCGTTCAATTCCATTCATGTATTATGCCTACATGATATGTTGAATGATCTTCGTGAAAGTTATGACTTTACCACTGACTATATACAAGGTTATAATAAATGTTGAATTCCTTTAATGAAGATTTTAGGTCCCCCAATTACTATATACGTGGTTATAGTATATGTTGAATCTGTTTAGTGAGATTTCTGACTCTACCAATTATTATATACAAGGTTATAGTAAATGTTCAATCCATTTAGTGAAAATTCTGACTCTACCACTTGCTATATGCAAGGTTATAGTAAGTGTTTAATGCGCTTAATGAAAATTCTGGGTACACCACTTACTATATACAAGGTTATAATAGATGTTTAATGTTCTTATTGAAAAATCTGGCTCCAGCACTTACTATGTAATACTCACTCTGTCTCAATTTATCAATTTATGTGATGCACTTTTAACTGGAAGTTTAAGGAAGAAAGAAAGACAACACTTCTAGATTGTGGTAAATAACAAACCATAAGTGTGTGTATATATATATATATATATATATATTTCATCAAGTGTAAAATGTGAAGTTTATTGTTAGGTTGTTTTTAATTATAGAAAGGTAATTCTTTTTGGACAGACTTCAAGAATAAATGCATCACATAAGTTGGGGAGAAAGTAGAACGATTTGAAAAATAACATATACTTGCACTAAGTTTCTATCTAGATGAATCGTGAGTGTGCTGATACTTGATACTTACCATCCATGAATTTCAAATCCTAGATTGCTTTTACCTCTAGGAATAATTTGAACTGAAGTTGCAGTGATAGCTTCAATTGAATTAGGAAGGCTTTGATTTTGATCAGGGTCGGCCTTTGCCAACTCCTTTACACACGCACACTTAACGTTGATTAAGTGGAAATTTTGAGGTTGTGCCCAATTGATTAGCAAGTTCCTTTTTTGTGGTTGGTGTTTCAGTGATATGCTCAAAGACACTAGTGATTTAGTTTCAGACTGAATAGTAACTATGACCCTGGAAATACACTAACATAGTCGTTGATAACAACTTACCTACGTCCAAAGCGAAAAGTTAGTACTAGTAACGATTTAGTTAGTACTGTGTTTAATGGTTATTCATATTACAGGTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAG</genome_strand>
        <mrna_strand>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E476340" ref_strand="+" ref_description="SGN-E476340 [cSTB-44-M22]">
      <seq>cttgctcgcttcccttctggagatttcatcttgtacgatcaaccgattactttggatgatcttcaacaagctacctcgcaggttggcgactttgcagttgacaatagagctggcattagcagaactttacaccgaattagtgctattagaaaccggaaaggtgcaattattggtttaacttgtcgagttggtcgggcaatatctggaagtgcgaactcattgcgagatctagttaaagatggtgcttctttgttgctcattgggccttctggagtaggaaaaacaactattatcagggacatagccaggatgcttgcacatgattatgggaagcgcgtaatgattgcggacacctctaatgaaaatggtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="125091" stop="130774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125391" g_stop="125471" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125472" i_stop="126986" i_length="1515">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126987" g_stop="127201" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="296" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127202" i_stop="130396" i_length="3195">
            <donor d_prob="0.896" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130397" g_stop="130474" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="374" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E476340" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125391" e_stop="125471"/>
          <exon e_start="126987" e_stop="127201"/>
          <exon e_start="130397" e_stop="130474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAGGTTAGAATTAATTAAATGCAGCACCCATTTCACCTTGAGATATATGTGTGTATATATACATGAGCAGAGGTAGGGTATCAGAAGGGGATTCGAAACCCTTAATTGTAAAATTACACTATATATATAAAAGATTATAGTAAATCTTGAATTTTTGTAGTAAGAATTCTAACTCTACCACTTATTCTGTATACATGGTTATAGAATAGGCATTATACATAAACATACCTTTAACTTGGCTTCATCGAACAAATATGACTTTTAACTTAGGGTGTACAACTGTACACTTAAACTCATATAAAATTGAATAAATAAACACATTCATTCTGAATGAAGTCCTACGTGGTGATTTTGTATCATGTGGCGTCCTATGTGTATTATGCCACGTAGGACGTATGTGTCTACTCGTTCAATTCCATTCATGTATTATGCCTACATGATATGTTGAATGATCTTCGTGAAAGTTATGACTTTACCACTGACTATATACAAGGTTATAATAAATGTTGAATTCCTTTAATGAAGATTTTAGGTCCCCCAATTACTATATACGTGGTTATAGTATATGTTGAATCTGTTTAGTGAGATTTCTGACTCTACCAATTATTATATACAAGGTTATAGTAAATGTTCAATCCATTTAGTGAAAATTCTGACTCTACCACTTGCTATATGCAAGGTTATAGTAAGTGTTTAATGCGCTTAATGAAAATTCTGGGTACACCACTTACTATATACAAGGTTATAATAGATGTTTAATGTTCTTATTGAAAAATCTGGCTCCAGCACTTACTATGTAATACTCACTCTGTCTCAATTTATCAATTTATGTGATGCACTTTTAACTGGAAGTTTAAGGAAGAAAGAAAGACAACACTTCTAGATTGTGGTAAATAACAAACCATAAGTGTGTGTATATATATATATATATATATATATTTCATCAAGTGTAAAATGTGAAGTTTATTGTTAGGTTGTTTTTAATTATAGAAAGGTAATTCTTTTTGGACAGACTTCAAGAATAAATGCATCACATAAGTTGGGGAGAAAGTAGAACGATTTGAAAAATAACATATACTTGCACTAAGTTTCTATCTAGATGAATCGTGAGTGTGCTGATACTTGATACTTACCATCCATGAATTTCAAATCCTAGATTGCTTTTACCTCTAGGAATAATTTGAACTGAAGTTGCAGTGATAGCTTCAATTGAATTAGGAAGGCTTTGATTTTGATCAGGGTCGGCCTTTGCCAACTCCTTTACACACGCACACTTAACGTTGATTAAGTGGAAATTTTGAGGTTGTGCCCAATTGATTAGCAAGTTCCTTTTTTGTGGTTGGTGTTTCAGTGATATGCTCAAAGACACTAGTGATTTAGTTTCAGACTGAATAGTAACTATGACCCTGGAAATACACTAACATAGTCGTTGATAACAACTTACCTACGTCCAAAGCGAAAAGTTAGTACTAGTAACGATTTAGTTAGTACTGTGTTTAATGGTTATTCATATTACAGGTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAGATCTAGTTAAAGATGGTGCGTCTTTGTTGCTCATTGGTCCTCCTGGAGTAGGAAAAACAACTATTATCAGGTTGGTTGTTACATAGACTCTCATGTCATGCCCTCTGATCTTTGATGTGCAATGTCATGAACTTGAGGAACATTTCTGCTGTTTGACCTGAATCTCCTTCTCATTTTAAAGTTAATCGGTGCCATTACATTTCTGGTTGTCACATTAAAAAGATATATTTTTCTTTGAGAAAAGACATAAAGTGACACCTGAAGTTGTCCCTAATTTTCAAGAAGACACCTTAAGTATGTGGTCCTCCTATAACCCCACAAAAGTAATAAATACCTTTGTTAATAGACAGTTTGACCCGTTTCTTCCCTATGTTTGTTTTCACGTAGATGACGCGAGTGAATGAGAAACTTTGCTTCCAAAAATGAATTAAAAACCTCCACTTGTCAGTTTTTTTCTGTTATTTAATTATTTCCTCTTTAATTTTTTCGAAAAAGCGTTGGTTGAAGGTTTAACAAAAATTATCTTCTCTCTTGAATGAAATCAGCCTAAAAAGGTAAGAACTTTCTAACTACTTACTAATTTCCAGTTCAAGGTTTAATTTCTTTAAAATTTGAGAAATCAAGATATATTTTTTGTGATTAAAATAATTTTGTAAAGTCAAGTTCAATCTTGAATCGTATTTGGAATGATGAGAATGATCCGATATTGGTGTGAAGATGCAATGCAAACATGGAACAATGTTTTGGACGGCGAAAGGCGACAAGAGTCTTGCCTCACCAAAAGATGAGTCGAGCGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCAATTAAGACCAACAAATTAAAATATTTAATTGCATATGTAAATAATCAAAATCTCAATAGCAATAACATATTAGCAAATATTTCAATTCAAAAACTGAAAATAGGTAGTACATACCAATAGTCTAGAACTTGAATGAACAAACAAAGTACAAAAGTCAAAACAATGAAAAAAAAAACAAAGGTAGAAGTAACTCTGAAGTCTAAAGAAGAAGAAGGAAAAAGAAAGAAAGGAAGAAGAAGAGAAGAAGAAATTAGCAGAAGAAAAGAAGAAATACGTATTGGTTGGAGTTTGGAGTCGCCAGTAAAGTCTGGCTGATTGCCGAGAAGTCAAGTCAAGTCGACTAGTTGGGGTCACAGTCTAAGAGTGCAACTTTCTAAATTTGGAAAGTAAACCCTAAAATGATCTTTTAACTTTTAAAATCCTAAATTGGTCGCCTTTTTTTAAGAAAACACAAAAGGCGGCGCCTTTCTTGCCTCTGTCGTCGTTGTCTCGATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGCTAAAAAGCAATGAAGGTTCGCCTCACATTGCCTCACCTCTAGCCATTTCCTTTCACAACATTGACATGGAAATTCACTTTCAATACAAATTTCTTGGTGGTCCAGTGCCAATTGAAGCACAATTCTAGTGCCAACAGAACCCAACAAGAATGAACCTCTAATTCATCCCACGACTCTTCGAATTTGCAAAAGGAATTTGCGATCATTGAAGCAATTTCATAGAAGAGTTTGACTGGGCTCAAAAAAAGTATATCTATATCCTTGGAGAAATCTTGTATGATTCATGTAAAATTGACTATGGGGTATGATTCTCCGGTAGTTGATCTATCTATGATCAAAGATTCAGCTCATTCCGCAGTCCCATTGGAAAGATCTCAACAGGCGATTTTCTGTGAGAATCGCCTGCGGATGGGTGGCCCCAGATGTGCCTGCAATTTCAATTACCCTCTGACGAGATTCGAGGGGAATCAATCAATGGGGAATACCCCGATTTCCTAACGTACCTTATACTGAAAGCCCACACAAAATGGACGGCGGAATCATAATCGAGGAGAACTCCGGCGATGGCGATAGAGCTCTGGTGAAATTTTCAGGCAACGAGCAATGCCAAAATGAGCATCAGAATGAACTGAACGCAACACAAGAAAAAGCCCCAATTGGTAAGCTTCCTAACAATTCGAATTTGCAAATTAGGGTTAAGCAAATTGGAGGTCTCAGGCAAAGTAATTATGTCCAATTTTCGGGCAATACTCAAAGCCATCAGGTTCATGATATTTGAGGCCAATATAAGTTTGAATCAAGTTCATACTGTTGAAGCTGCAAGCTCTAATTCCAATGCAGACTTGGTTTTACATTTTGGTAAGCTATACCACACAGATGCTGGCTAGCTTTTTCAAGTTTGGAAGCAGGCAGTGGCTTAGCATACCACACATTTGGTAAGCTTTACCGCACATAGCTTGAAACCAGTAAGTAGTTTGATTCTGGATTTTATATCAGGTCCTTGCCAACCCTTTGAAATTTTCTCATTGGCGCTGCTAGTTTGGTATCTAGATATGGCTTCCTGATGTCTCTTTAATTGAGATATAAGCTGAGACTTCTTGCTTTATCTTCGCTTAAGCTCAATTTTGGACAAGTTCAATGTTACTTGAATACGAAGCTCTCATGAAGCCATGGTTCATGGAATAAAACAGGTTTCTTGGCGTATCCAACAGCAGACTTTTTTTTATTGTTGGTAAAATTAAAGATCCTGGACATAATCAATAATATTAAAGTTTTCCAGTTTTTTCATAATGTAATTCTACTTTTTTTCTTCAACTCTTCCTTTTTTTATGAAGTCTTTGTGGGGTTATTTAGCTTAAACTTTTAGTCCCAGGCTAGTTTAGACAATGCTGCTTGTTACTGTAATTTAGTGGAATGATGTATTTATGAAGTGGTGGGAAAATATCGTGGATTTAGCACTTGGTAGTGGGTTGCATACGGGGCTCTTACAATTATTCTGTGTCTTATTCTGTTGCATTTATTGCAAAGGACAGGTGTGTATTTGTTAACATTTCTTATTCAAGGTATGCTTAGTTGTGTATTTTGACTGTTCCCTTTAGATGTTTGTTTCTTGCATTTCCTTCTCATTGTCCACATTATTGGTTAGCTCTAATGTTATGGAAGTCTGTCTAATGTTTGATTTATCAAGGGTTCAGCTGTCTGTATGTACTAATTATTGTATCCCATGCCATGGTGAACACTTTCTCCTTTCATTTCTCCTTGCACACTGATACACATAAAATCCTGCAGTTATAACTTAGCAATGATAGTTCCTCCGCAATGTGCATGTATCTCCTACCATCCCAATAAGCTATTTCCATGAGATTCAGCAGATGGGTATGTAAGGATTTTTTTCTTTATACTCCTAGGGACATAGCCAGGATGCTTGCAAATGATTATAGGAAGCGCGTAATGATTGTGGACACCTCTAATGAAATTGGTGGGGA</genome_strand>
        <mrna_strand>CTTGCTCGCTTCCCTTCTGGAGATTTCATCTTGTACGATCAACCGATTACTTTGGATGATCTTCAACAAGCTACCTCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAACCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGGGCAATATCTGGAAGTGCGAACTCATTGCGAGATCTAGTTAAAGATGGTGCTTCTTTGTTGCTCATTGGGCCTTCTGGAGTAGGAAAAACAACTATTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATAGCCAGGATGCTTGCACATGATTATGGGAAGCGCGTAATGATTGCGGACACCTCTAATGAAAATGGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E473828" ref_strand="+" ref_description="SGN-E473828 [cSTB-33-L18]">
      <seq>catatgccacaagtgattgtaatcgatgagattggtactaagcttgaggcaatggctgcaagcaccattgcacaacgaggaattcagttagttgcaactgctcatggagtaacaatagagaatttagtaatgaatcctgctttagagatgctggttggaggagtacagagtgtgacacttggggatgaagaggctagcaggagaggcgttcagaaatctgttctggagaggaaaggtccatcatcttttagctgtggggttgagataatctccaaggcagaattgagagttcaccctgatttagaagcaacagtagatgcaattcttgcaggacgttacccaaaatatgaaattcgcaagataaatccaggatcgcaagatggaataatggaaagttcatccatccaaacaccattagatgaaataaatgaagttttgattgaagatataatccagattaatggaggtatacctgattcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="130555" stop="132490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130855" g_stop="131022" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131023" i_stop="131741" i_length="719">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131742" g_stop="131904" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="331" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131905" i_stop="132037" i_length="133">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132038" g_stop="132190" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="484" r_length="153" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E473828" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130855" e_stop="131022"/>
          <exon e_start="131742" e_stop="131904"/>
          <exon e_start="132038" e_stop="132190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGCCACAAGTGATTGTAATCGATGAGATTGGTACTAAGCTTGAGGCAATGGCTGCAAGCACCATTGCACAACGAGGAATTCAGTTAGTTGCAACTGCTCATGGAGTAACAATAGAGAATTTAGTAATGAATCCTGCTTTAGAGATGCTGGTTGGAGGAGTACAGGTAGTTCCCGTTTAACAGAACTTTTTCCAGTTAGTTGTTACATTTAAAACAATTGGGCTGATGCTTAATTAATGGTGAACAATGCTGTTATGCTACAAACGGGTAAGTACGGTAACTTTGTGTTTTTCCAATAAAACGGGTTAGTAGGTAATAGGACTTCTATTTAGAAAGAAGCTAGTAAACAGTCTAGGGGGATCCCACTGTTCCTAGTTGTACCAGATGTGACTTCTTCTTTCCTTTCATATATCATAAGTAGAACGCAAAATCAATATCATTGCAATGAAGTGAACCAATGCATTCTCTACATAATATATGCAATTGCAACACAAGTAGTGCATGAAGGGTAAAAAAACAAAAACAATTTAATTGAAGTGAACCACTGCATTGTCTATATTTTCTATGTAATTGCAACATGAGCTGTGCATGGAGGGTCAGAGGGTGAAAGTCTTTAACTTGGTTGCCTAACTATTTACTCATGGAGGTGTCTTGACATTGATATCTATAATGGATGAGTCCCAAAAGGTTTTCTCAAAAAAAAAAAAAAAAAAAGAAAGAAAAGTGAAGAGTCTCAAAAGATGATATCAACGTCAAACCCACCCTTCGAAATGATGCCATAATACCATTATAGCATGGAGCGACGTTTTACTCTCATGCACTATTGGATGACTGGAAGCTGTTTGAGGTTTATAGTATAGTTGCATAACTTATTTCTTTGTCAGAGTGTGACACTTGGGGATGAAGAGGCTAGCAGGCGACGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAGGTCTTTTACTAGTCCTCCCTCCTAAATCCTAACAAAACATTTCTGCTGACAAATCATTTGCATATCATCCTGTTGGAAAGCTGATTGAATGTTGTTTAATCGTCTGCCTTGGTGTTAATTTCATGCTGAGAAGGACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATTATGGAAATTTCATCCATCCAAGCACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTG</genome_strand>
        <mrna_strand>CATATGCCACAAGTGATTGTAATCGATGAGATTGGTACTAAGCTTGAGGCAATGGCTGCAAGCACCATTGCACAACGAGGAATTCAGTTAGTTGCAACTGCTCATGGAGTAACAATAGAGAATTTAGTAATGAATCCTGCTTTAGAGATGCTGGTTGGAGGAGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGACACTTGGGGATGAAGAGGCTAGCAGGAGAGGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAG.....................................................................................................................................GACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATAATGGAAAGTTCATCCATCCAAACACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E453747" ref_strand="+" ref_description="SGN-E453747 [cSTS-21-A17]">
      <seq>gctttactcatgcactattggacgactggaagctgtttgaggttcatagtatagttgcataatttatttctttgtcagagtgtgacacttggggatgaagaggctagcaggagaggcgttcagaaatctgttctggagaggaaaggtccatcatcttttagctgtggggttgagataatctccaaggcagaattgagagttcaccctgatttagaagcaacagtagatgcaattcttgcaggacgttacccaaaatatgaaattcgcaagataaatccaggatcgcaagatggaataatggaaagttcatccatccaagcaccattagatgaaataaatgaagttttgattgaagatataatccagattaatggaggtatacctgattcaactgagctcctctcagcaacaggtccgagcatggaaggaggttctggtgaaagtgaggatgccctttgcatttttctatatggggtattgtagatctcagaggcaagtgtgatgcaagggataaaacagctaagcattgacgataccgttgagtttactgataatatcagtgaagcagatgtgctacttgctctgcagtccaagcttaagaaaaattctcggattcaagcagctgcaagatctcacggcattcctatttatgtgacaaagacaagctcctcaacacagctgacaaaggctatgcangcattaatcagtgattttgctgatggcttttgagtttcttgaatctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="131370" stop="133844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131662" g_stop="131904" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131905" i_stop="132037" i_length="133">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132038" g_stop="132270" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="474" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132271" i_stop="133113" i_length="843">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133114" g_stop="133299" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="660" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133300" i_stop="133457" i_length="158">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133458" g_stop="133544" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="748" r_length="88" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E453747" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131662" e_stop="131904"/>
          <exon e_start="132038" e_stop="132270"/>
          <exon e_start="133114" e_stop="133299"/>
          <exon e_start="133458" e_stop="133544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACTCTCATGCACTATTGGATGACTGGAAGCTGTTTGAGGTTTATAGTATAGTTGCATAACTTATTTCTTTGTCAGAGTGTGACACTTGGGGATGAAGAGGCTAGCAGGCGACGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAGGTCTTTTACTAGTCCTCCCTCCTAAATCCTAACAAAACATTTCTGCTGACAAATCATTTGCATATCATCCTGTTGGAAAGCTGATTGAATGTTGTTTAATCGTCTGCCTTGGTGTTAATTTCATGCTGAGAAGGACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATTATGGAAATTTCATCCATCCAAGCACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTGAGCTCATCTCAGCAACAGGTCCGAGCATGGAAGGAGGTTCTGGTGAAAGTGAGGATGCCCTTTGCATTTTTCTATATGGGGTAAGATGATATTACCATTTACTTGTTCGATAGGAAAAAAGAATGTCATCACTACATTGAATATGTATAAGTTTGGTTAATAACTAAAATCCCAGTCTCAGAATCTGTTCTCTTAGTTCAACTTTAATACCGAGCTAGTATTCGTATTGTTGAAGGGCCTTCGAAAGAGAATCAATTTCCAAAAAGTGAAATACCTCCTAGTACATGATGGTTCTGCATTCGTATACTATTGTTACTTAATTTGCTGCAAAGTTAGTCTCTTTCAATTTGTGGATCTAATAAACCTGATTTGATGCTTCTCCAGTATCCTAATAGTCTCCTTGTTTTCCTATCTTTTCATGTTAAGGTCCCACATACCCCCTTCCTCTGCTGGAAGTGCTTGGTGGCCCCAAACATGAAGTGTAGAAGTATCGAGCAGGAATGATTTTTTTCTTTTGGCTGACTATTCAAATTCAAGCCCCAGCAATTTTTTTTTTTTAAAAAATATTCCTGGAAGAAAAGATCACATGCTTGAATTTTGTCACTCCTTGTATAGGCGGAAAAAGAGTAGATGTTCTTCTATGCTTTAGCTCATTAAGATTTCACCCATTAAAATACTTGTCAAAGACACATTTTAGAATTACAGAGCCTCCTCTTCAAACTTTATATCATCTAATGAAGCATTTGAGTTAATCCACTCTCTTTTCCTTTTAGTTCTCTAAATTTTTTAACTTCTATGAGGGAAAGTGTAGCATAGAATAAGAGATTCTTATGAAGAAAACGTAATAGAAGAGAGGAAAAAACACGATAAAGCTCCATCAGCTTCTATATGGAAACATCTACGTGGAACTCATATTTGAGCAGGTATTGTAGATCTCAGAGGCAAGTGTGATGCAAGGGATAAAACAGCTTAACATTGACGATACGTTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTAAGAAAAATTCTCGGATTCAAGCAGCTGCAAGATCTCACGGCATTCCTATTTATGTGACAAAGGTATTTGTTAGAACCAACTTGCAATATCTCCTTATTTGAATGAAAGTTCTGAAGAAAGAAGGAAAAACAAGATGAGTTCTTTTATGCATTATCTGTTGCCTGTGCTGAGTCCGAATTCACTATCCTTGTGTGTATTGAAGTATCTTTTCCTTTTGCAGACTAGCTCCTCAACACAGCTGACAAAGGCTATGCAGGCATTAATCAGTGATTTTGCTGATGGC-TTTGAGTTTCTCGAATCTGAAGCT</genome_strand>
        <mrna_strand>GCTTTA--CTCATGCACTATTGGACGACTGGAAGCTGTTTGAGGTTCATAGTATAGTTGCATAATTTATTTCTTTGTCAGAGTGTGACACTTGGGGATGAAGAGGCTAGCAGGAGAGGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAG.....................................................................................................................................GACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATAATGGAAAGTTCATCCATCCAAGCACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTGAGCTCCTCTCAGCAACAGGTCCGAGCATGGAAGGAGGTTCTGGTGAAAGTGAGGATGCCCTTTGCATTTTTCTATATGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTAGATCTCAGAGGCAAGTGTGATGCAAGGGATAAAACAGCTAAGCATTGACGATACCGTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTAAGAAAAATTCTCGGATTCAAGCAGCTGCAAGATCTCACGGCATTCCTATTTATGTGACAAAG..............................................................................................................................................................ACAAGCTCCTCAACACAGCTGACAAAGGCTATGCANGCATTAATCAGTGATTTTGCTGATGGCTTTTGAGTTTCTTGAATCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BUXwxk/sgn_ests_tomato_potato" ref_id="SGN-E702300" ref_strand="+" ref_description="SGN-E702300 [FA18BD06]">
      <seq>cgaaagagaatcaatttccaaaaagtgaaatacctcctagtacatgatggttctgcattcgtatactattgttacttaatttgctgcaaagttagtctctttcaatttgtggatctaataaacctgatttgatgcttctccagtatcctaatagtctccttgttttcctatcttttcatgttaaggtcccacatacccccttcctctgctggaagtgcttggtggccccaaacatgaagtgtagaagtatcgagcaggaatgatttttttcttttggctgactattcaaattcaagccccagcaattttttttttttaaaaaatattcctggaaaaaaagatcacatgcttgaattttgtcactccttgtataggcggaaaaaaagtaaatgttcttctatgctttagctcattaaaatttcacccattaaaatacttgtcaaagacacattttaaaattacagagcctcctcttcaaactttatatcatctaatgaagcatttgagttaatccactctcttttccttttagttctctaaattttttaacttctatgagggaaagtgtagcataaaataagagattcttatgaagaaaacgtaatagaagagaggaaaaaacacgataaagctccatcagcttctatatggaaacatctacgtggaactcatatttgagcaggtattgtagatctcaaaggcaagtgtgatgcaagggataaaacagcttaacattgacgatacgtttgagtttactgataatatcagtgaagcagatgtgctacttgctctgcagtccaagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-M2yPh/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="132132" stop="133537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132432" g_stop="133237" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-E702300" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132432" e_stop="133237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGAGAATCAATTTCCAAAAAGTGAAATACCTCCTAGTACATGATGGTTCTGCATTCGTATACTATTGTTACTTAATTTGCTGCAAAGTTAGTCTCTTTCAATTTGTGGATCTAATAAACCTGATTTGATGCTTCTCCAGTATCCTAATAGTCTCCTTGTTTTCCTATCTTTTCATGTTAAGGTCCCACATACCCCCTTCCTCTGCTGGAAGTGCTTGGTGGCCCCAAACATGAAGTGTAGAAGTATCGAGCAGGAATGATTTTTTTCTTTTGGCTGACTATTCAAATTCAAGCCCCAGCAATTTTTTTTTTTTAAAAAATATTCCTGGAAGAAAAGATCACATGCTTGAATTTTGTCACTCCTTGTATAGGCGGAAAAAGAGTAGATGTTCTTCTATGCTTTAGCTCATTAAGATTTCACCCATTAAAATACTTGTCAAAGACACATTTTAGAATTACAGAGCCTCCTCTTCAAACTTTATATCATCTAATGAAGCATTTGAGTTAATCCACTCTCTTTTCCTTTTAGTTCTCTAAATTTTTTAACTTCTATGAGGGAAAGTGTAGCATAGAATAAGAGATTCTTATGAAGAAAACGTAATAGAAGAGAGGAAAAAACACGATAAAGCTCCATCAGCTTCTATATGGAAACATCTACGTGGAACTCATATTTGAGCAGGTATTGTAGATCTCAGAGGCAAGTGTGATGCAAGGGATAAAACAGCTTAACATTGACGATACGTTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTA</genome_strand>
        <mrna_strand>CGAAAGAGAATCAATTTCCAAAAAGTGAAATACCTCCTAGTACATGATGGTTCTGCATTCGTATACTATTGTTACTTAATTTGCTGCAAAGTTAGTCTCTTTCAATTTGTGGATCTAATAAACCTGATTTGATGCTTCTCCAGTATCCTAATAGTCTCCTTGTTTTCCTATCTTTTCATGTTAAGGTCCCACATACCCCCTTCCTCTGCTGGAAGTGCTTGGTGGCCCCAAACATGAAGTGTAGAAGTATCGAGCAGGAATGATTTTTTTCTTTTGGCTGACTATTCAAATTCAAGCCCCAGCAATTTTTTTTTTTTAAAAAATATTCCTGGAAAAAAAGATCACATGCTTGAATTTTGTCACTCCTTGTATAGGCGGAAAAAAAGTAAATGTTCTTCTATGCTTTAGCTCATTAAAATTTCACCCATTAAAATACTTGTCAAAGACACATTTTAAAATTACAGAGCCTCCTCTTCAAACTTTATATCATCTAATGAAGCATTTGAGTTAATCCACTCTCTTTTCCTTTTAGTTCTCTAAATTTTTTAACTTCTATGAGGGAAAGTGTAGCATAAAATAAGAGATTCTTATGAAGAAAACGTAATAGAAGAGAGGAAAAAACACGATAAAGCTCCATCAGCTTCTATATGGAAACATCTACGTGGAACTCATATTTGAGCAGGTATTGTAGATCTCAAAGGCAAGTGTGATGCAAGGGATAAAACAGCTTAACATTGACGATACGTTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>133</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="750" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="750" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="750" e_stop="1" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="750" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="512" stop="12"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGACGGCTAAGCTT</gDNA_template>
            <first_frame> D  E  L  T  P  E  T  E  E  Q  D  E  E  D  S  E  M  K  G  L  V  A  V  A  A  V  E  V  N  S  I  V  D  Q  L  L  E  S  E  K  K  E  E  E  E  D  S  S  I  Q  S  F  S  S  F  S  E  N  E  E  D  E  T  L  E  E  E  E  R  F  K  S  I  I  K  K  V  I  E  E  T  L  L  L  E  H  I  D  R  E  D  A  K  Q  I  Q  H  E  H  K  H  E  E  E  A  K  S  D  A  V  F  S  N  N  E  N  E  K  E  S  R  K  Q  Q  N  E  S  I  L  P  D  C  L  L  L  M  M  C  E  P  K  L  S  M  E  V  S  K  E  T  W  V  Y  S  S  T  E  V  K  Q  A  K  T  V  T  T  K  K  K  K  N  E  I  P  E  D  P  K  R  R  R  S  I  D  K  S  K  Q  Q  H  L  L  L  Q  P  P  R  S  S  C  S  F  P  A  T  G  V  S  P  A  I  S  M  A  T  M  I  E  Q  K  L  V  N  A  V  A  Y  E  P  L  V  L  T  R  C  K  S  E  P  M  R  T  V  A  G  G  T  A  K  L </first_frame>
            <second_frame>  M  N  *  R  Q  K  Q  R  N  K  M  K  K  T  V  R  *  R  D  L  *  Q  *  L  Q  *  K  *  T  P  L  L  I  N  S  L  N  Q  R  K  K  K  K  K  K  T  A  A  F  R  V  F  H  L  S  Q  K  T  K  K  M  K  H  W  K  K  K  R  G  S  N  Q  L  L  R  R  *  S  K  K  H  S  C  *  N  T  L  I  E  K  M  Q  N  K  F  N  T  N  T  N  T  K  K  K  Q  N  L  M  Q  Y  F  Q  T  M  K  T  K  K  N  R  E  N  N  R  T  N  Q  F  F  Q  I  A  C  F  *  *  C  V  S  P  S  Y  P  W  R  F  L  R  K  H  G  Y  T  A  A  P  K  *  N  K  L  K  Q  *  R  Q  R  R  R  R  M  K  F  P  R  I  Q  R  E  G  E  A  L  T  R  V  N  N  N  I  S  S  S  N  H  Q  G  H  R  V  L  S  R  R  P  E  F  R  R  R  Y  P  W  Q  R  *  *  S  R  N  W  *  T  Q  W  L  T  S  R  *  C  *  Q  G  A  S  R  S  R  *  G  R  W  R  G  G  R  L  S   </second_frame>
            <third_frame>   *  I  N  A  R  N  R  G  T  R  *  R  R  Q  *  D  E  G  T  C  S  S  S  C  S  R  S  K  L  H  C  *  S  T  P  *  I  R  E  K  R  R  R  R  R  Q  Q  H  S  E  F  F  I  F  L  R  K  R  R  R  *  N  I  G  R  R  R  E  V  Q  I  N  Y  *  E  G  D  R  R  N  T  L  V  R  T  H  *  *  R  R  C  K  T  N  S  T  R  T  Q  T  R  R  R  S  K  I  *  C  S  I  F  K  Q  *  K  R  K  R  I  E  K  T  T  E  R  I  N  S  S  R  L  L  A  S  N  D  V  *  A  Q  A  I  H  G  G  F  *  G  N  M  G  I  Q  Q  H  R  S  K  T  S  *  N  S  D  D  K  E  E  E  E  *  N  S  R  G  S  K  E  K  A  K  H  *  Q  E  *  T  T  T  S  P  P  P  T  T  K  V  I  V  F  F  P  G  D  R  S  F  A  G  D  I  H  G  N  D  D  R  A  E  T  G  K  R  S  G  L  R  A  V  S  V  D  K  V  Q  V  G  A  D  E  D  G  G  G  G  D  G  *  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="750" stop="1"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DELTPETEEQDEEDSEMKGLVAVAAVEVNSIVDQLLESEKKEEEEDSSIQSFSSFSENEEDETLEEEERFKSIIKKVIEETLLLEHIDREDAKQIQHEHKHEEEAKSDAVFSNNENEKESRKQQNESILPDCLLLMMCEPKLSMEVSKETWVYSSTEVKQAKTVTTKKKKNEIPEDPKRRRSIDKSKQQHLLLQPPRSSCSFPATGVSPAISMATMIEQKLVNAVAYEPLVLTRCKSEPMRTVAGGTAKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="620" PGL_stop="1141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="620" e_stop="1141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="620" e_stop="1141" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="620" stop="1141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="620" stop="1090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTTCTTTTTTCTCTGATTCAAGGAGTTGATCAACAATGGAGTTTACTTCTACTGCAGCTACTGCTACAAGTCCCTTCATCTCACTGTCTTCTTCATCTTGTTCCTCTGTTTCTGGCGTTAATTCATCGCATTTGAGCTTTTCTTCATCCTTACTACTATCTGTGACTTCTACTGCTTCTTCATTTTCTACCAGATCTACAGAAACACTAGTTTCCTGTAGTACATTGCATTCAGTGTTTTCTGTATCTTCTACTTCTTTCACCTCCGCATTTTCTCCGATTTCTTTCTCATTAGTTTCTTCCCGAGCAGGTGATTCCCAGAATCGATTAGCAATATCCGCCATTTTCATAGGATCAGATCGACATCTCATAAGAAGCAAAGCATTTTTAGGTGGAATGCAAATGCTAACTCTACCTTTCTCTTCCTTCATTTCAACACTCTCATCGTCATGATCCTTGAACTCAATACCTTCAAACACATGCCTTCTTGAGCTTCTCATACTACTTTGCATTTTCTCT</gDNA_template>
            <first_frame> S  S  S  F  F  S  D  S  R  S  *  S  T  M  E  F  T  S  T  A  A  T  A  T  S  P  F  I  S  L  S  S  S  S  C  S  S  V  S  G  V  N  S  S  H  L  S  F  S  S  S  L  L  L  S  V  T  S  T  A  S  S  F  S  T  R  S  T  E  T  L  V  S  C  S  T  L  H  S  V  F  S  V  S  S  T  S  F  T  S  A  F  S  P  I  S  F  S  L  V  S  S  R  A  G  D  S  Q  N  R  L  A  I  S  A  I  F  I  G  S  D  R  H  L  I  R  S  K  A  F  L  G  G  M  Q  M  L  T  L  P  F  S  S  F  I  S  T  L  S  S  S  *  S  L  N  S  I  P  S  N  T  C  L  L  E  L  L  I  L  L  C  I  F  S </first_frame>
            <second_frame>  L  L  L  F  S  L  I  Q  G  V  D  Q  Q  W  S  L  L  L  L  Q  L  L  L  Q  V  P  S  S  H  C  L  L  H  L  V  P  L  F  L  A  L  I  H  R  I  *  A  F  L  H  P  Y  Y  Y  L  *  L  L  L  L  L  H  F  L  P  D  L  Q  K  H  *  F  P  V  V  H  C  I  Q  C  F  L  Y  L  L  L  L  S  P  P  H  F  L  R  F  L  S  H  *  F  L  P  E  Q  V  I  P  R  I  D  *  Q  Y  P  P  F  S  *  D  Q  I  D  I  S  *  E  A  K  H  F  *  V  E  C  K  C  *  L  Y  L  S  L  P  S  F  Q  H  S  H  R  H  D  P  *  T  Q  Y  L  Q  T  H  A  F  L  S  F  S  Y  Y  F  A  F  S   </second_frame>
            <third_frame>   F  F  F  F  L  *  F  K  E  L  I  N  N  G  V  Y  F  Y  C  S  Y  C  Y  K  S  L  H  L  T  V  F  F  I  L  F  L  C  F  W  R  *  F  I  A  F  E  L  F  F  I  L  T  T  I  C  D  F  Y  C  F  F  I  F  Y  Q  I  Y  R  N  T  S  F  L  *  Y  I  A  F  S  V  F  C  I  F  Y  F  F  H  L  R  I  F  S  D  F  F  L  I  S  F  F  P  S  R  *  F  P  E  S  I  S  N  I  R  H  F  H  R  I  R  S  T  S  H  K  K  Q  S  I  F  R  W  N  A  N  A  N  S  T  F  L  F  L  H  F  N  T  L  I  V  M  I  L  E  L  N  T  F  K  H  M  P  S  *  A  S  H  T  T  L  H  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="653" stop="1075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STMEFTSTAATATSPFISLSSSSCSSVSGVNSSHLSFSSSLLLSVTSTASSFSTRSTETLVSCSTLHSVFSVSSTSFTSAFSPISFSLVSSRAGDSQNRLAISAIFIGSDRHLIRSKAFLGGMQMLTLPFSSFISTLSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="1937" PGL_stop="1221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1937" e_stop="1221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="1937" e_stop="1221" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1937" stop="1221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1818" stop="1269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</gDNA_template>
            <first_frame> K  K  T  Q  L  L  Y  T  Y  R  P  P  N  P  W  L  P  T  T  A  I  P  R  N  H  Y  H  I  T  E  N  S  F  I  S  S  F  L  Y  T  F  F  F  K  *  N  S  P  N  P  S  L  V  L  A  M  L  G  M  T  H  L  L  L  F  P  L  L  S  V  G  S  L  K  L  M  A  V  L  K  A  D  N  P  Q  L  R  F  L  L  P  P  E  R  N  E  G  R  V  L  I  T  R  N  L  R  L  R  R  *  L  V  L  V  R  *  K  *  R  R  R  R  K  L  G  K  H  G  I  C  L  I  E  G  V  I  *  V  S  G  S  W  K  K  K  K  G  E  F  *  F  R  I  R  G  V  L  V  C  I  C  R  R  K  I  N  V  R  W  R  I  E  I  R  D  G  Y  I  C  Q  *  R  Y  M  K  L  *  E  S  L  A  V  C  F  H  V  G  L  R  V  F  R  M  R  K  E  N  N  K  I  K  L  M  D  L  E  M  L  I  I  I  M  G  R  G  D  V  R  M  L  L  L  D  G  *  L  H  Y  K </first_frame>
            <second_frame>  K  K  H  S  F  S  T  L  T  D  P  Q  I  H  G  Y  L  Q  Q  Q  Y  Q  E  T  I  I  T  L  L  K  T  P  S  S  L  L  F  C  I  L  S  S  S  N  E  T  H  Q  I  H  P  *  S  *  P  C  S  A  *  P  T  S  Y  S  S  H  F  S  Q  S  E  A  *  S  *  W  Q  Y  *  R  R  T  I  P  S  Y  V  S  Y  Y  H  R  K  E  T  R  V  E  F  *  *  P  G  T  F  V  S  E  G  D  L  Y  W  S  G  E  N  E  D  E  E  E  S  *  A  N  T  E  F  V  *  *  K  E  *  Y  K  F  Q  E  V  G  R  R  K  K  G  S  F  D  S  E  S  E  E  F  *  C  A  F  A  G  A  R  S  M  C  G  G  A  *  K  S  E  M  G  T  F  A  S  N  D  I  *  S  F  E  R  V  *  L  F  V  S  M  S  V  F  V  F  F  E  *  E  R  K  T  T  R  *  S  *  W  I  *  R  C  *  *  *  *  W  A  E  E  M  *  G  C  C  C  *  M  A  S  C  I  T   </second_frame>
            <third_frame>   K  N  T  A  S  L  H  L  Q  T  P  K  S  M  A  T  Y  N  S  N  T  K  K  P  L  S  H  Y  *  K  L  L  H  L  F  F  F  V  Y  F  L  L  Q  M  K  L  T  K  S  I  L  S  P  S  H  A  R  H  D  P  P  L  T  L  P  T  S  L  S  R  K  L  K  A  N  G  S  I  K  G  G  Q  S  P  A  T  F  P  T  T  T  G  K  K  R  G  S  S  F  D  N  P  E  P  S  S  P  K  V  T  C  I  G  Q  V  K  M  K  T  K  K  K  V  R  Q  T  R  N  L  S  N  R  R  S  D  I  S  F  R  K  L  E  E  E  K  R  G  V  L  I  Q  N  Q  R  S  S  S  V  H  L  Q  A  Q  D  Q  C  A  V  A  H  R  N  Q  R  W  V  H  L  P  V  T  I  Y  E  A  L  R  E  F  S  C  L  F  P  C  R  S  S  C  F  S  N  E  K  G  K  Q  Q  D  K  V  N  G  S  R  D  V  D  N  N  N  G  Q  R  R  C  E  D  V  V  A  R  W  L  V  A  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1848" stop="1222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLHLFFFVYFLLQMKLTKSILSPSHARHDPPLTLPTSLSRKLKANGSIKGGQSPATFPTTTGKKRGSSFDNPEPSSPKVTCIGQVKMKTKKKVRQTRNLSNRRSDISFRKLEEEKRGVLIQNQRSSSVHLQAQDQCAVAHRNQRWVHLPVTIYEALREFSCLFPCRSSCFSNEKGKQQDKVNGSRDVDNNNGQRRCEDVVARWLVALQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12357" PGL_stop="5391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12357" e_stop="12007"/>
            <exon e_start="10578" e_stop="10351"/>
            <exon e_start="10034" e_stop="9961"/>
            <exon e_start="8445" e_stop="8286"/>
            <exon e_start="8138" e_stop="8019"/>
            <exon e_start="7908" e_stop="7800"/>
            <exon e_start="6081" e_stop="5391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="0.960"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="12357" e_stop="12007" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10578" e_stop="10351" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10034" e_stop="9961" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8445" e_stop="8286" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8138" e_stop="8019" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="8018" i_stop="7909" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7908" e_stop="7800" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6081" e_stop="5391" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12357" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12353" stop="12007"/>
              <exon start="10578" stop="10401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12320" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8286"/>
              <exon start="8138" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12316" stop="12007"/>
              <exon start="10578" stop="10393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12308" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12298" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12293" stop="12007"/>
              <exon start="10578" stop="10361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12277" stop="12007"/>
              <exon start="10578" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12275" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12271" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12257" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12257" stop="12007"/>
              <exon start="10578" stop="10405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12257" stop="12007"/>
              <exon start="10578" stop="10526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8286"/>
              <exon start="8138" stop="8093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8342" stop="8286"/>
              <exon start="8138" stop="8019"/>
              <exon start="7908" stop="7800"/>
              <exon start="6081" stop="5652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421567" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8319" stop="8286"/>
              <exon start="8138" stop="8019"/>
              <exon start="7908" stop="7800"/>
              <exon start="6081" stop="5578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5885" stop="5391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACACGTCCTCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA : ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG : GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG : GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG : GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG : GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> Q  T  R  P  L  H  S  P  L  F  C  M  Y  T  L  S  L  N  H  S  T  I  C  I  H  F  P  Q  I  T  E  F  A  A  Q  F  L  C  K  T  M  I  R  L  R  Y  R  R  I  E  I  G  T  G  D  G  G  I  S  N  L  G  F  G  K  R  G  I  V  T  S  C  R  A  V  L  L  P  R  F  G  G  P  E  M  L  E  F  R  D  N  V  S  V  P  D  L  K  P  N  Q  V  L  V  R  A  R  A  V  S  I  N  P  L  D  T  R  :  M  R  S  G  Y  G  R  S  I  F  E  P  L  L  P  L  I  L  G  R  D  I  S  G  E  V  A  A  V  G  N  S  V  K  S  L  T  V  G  Q  D  V  F  G  A  L  H  P  T  A  V  R  G  T  Y  T  D  Y  A  I  L  A  E  D  E  L  A  P  K  P  G  S  L  S  H  V  :  E  A  S  A  I  P  F  A  A  L  T  A  W  R  A  L  K  S  T  A  R  I  R  E  G :   H  R  V  L  V  I  G  G  G  G  A  V  G  F  S  A  I  Q  L  A  V  A  A  G  C  H  V  S  T  T  C  G  G  E  S  I  S  R  I  L  A  A  G  A  E  Q  A  I  D  Y  T  S  E  :  D  A  E  V  A  L  K  G  H  F  D  A  V  L  D  T  I  G  V  P  D  T  E  R  M  G  I  S  L  L  K  K  G  G  H  Y  M  T  L  Q  :  G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </first_frame>
            <second_frame>  R  H  V  L  F  T  L  P  F  F  A  C  T  L  F  H  *  T  I  Q  Q  Y  A  S  I  F  P  K  S  L  N  L  L  L  N  F  F  A  K  Q  *  S  D  *  D  I  G  G  L  R  L  V  L  V  M  E  E  F  R  I  *  V  L  A  K  E  V  L  L  Q  A  V  E  L  C  C  C  R  D  L  V  D  R  R  C  L  S  F  V  T  M  Y  L  F  L  I  *  N  L  I  K  C  L  F  V  L  V  L  F  Q  S  I  R  L  I  P  E :   C  D  Q  A  M  D  V  Q  F  L  N  H  F  Y  H  *  F  W  A  E  I  *  V  V  K  L  Q  L  L  E  I  L  S  S  H  L  Q  L  G  R  M  Y  L  V  L  C  I  Q  P  L  *  G  V  L  I  L  T  M  L  F  L  R  K  M  N  L  L  Q  S  R  D  H  F  H  M  W :   K  P  V  L  S  L  L  L  L  *  L  L  G  V  R  *  K  V  L  P  E  *  E  R   : G  I  G  Y  W  S  *  V  E  E  E  Q  *  V  S  L  Q  F  S  L  L  W  L  Q  A  A  M  F  L  L  R  V  E  E  R  V  *  V  A  F  *  Q  P  V  L  S  R  P  L  T  I  P  V  R :   M  L  K  *  H  L  R  G  I  L  M  L  S  W  I  Q  L  V  C  Q  I  Q  R  E  W  A  L  A  F  *  R  K  V  D  T  T  *  R  Y  R :   G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </second_frame>
            <third_frame>   D  T  S  S  S  L  S  P  F  L  H  V  H  S  F  T  E  P  F  N  N  M  H  P  F  S  P  N  H  *  I  C  C  S  I  S  L  Q  N  N  D  P  I  E  I  S  E  D  *  D  W  Y  W  *  W  R  N  F  E  F  R  F  W  Q  K  R  Y  C  Y  K  L  *  S  C  V  V  A  A  I  W  W  T  G  D  A  *  V  S  *  Q  C  I  C  S  *  S  K  T  *  S  S  A  C  S  C  S  C  C  F  N  Q  S  A  *  Y  Q   : N  A  I  R  L  W  T  F  N  F  *  T  T  S  T  I  D  F  G  P  R  Y  K  W  *  S  C  S  C  W  K  F  C  Q  V  T  Y  S  W  A  G  C  I  W  C  S  A  S  N  R  C  E  G  Y  L  Y  *  L  C  Y  S  C  G  R  *  T  C  S  K  A  G  I  T  F  T  C   : G  S  Q  C  Y  P  F  C  C  S  N  C  L  A  C  A  K  K  Y  C  Q  N  K  R  G  :  A  *  G  I  G  H  R  W  R  R  S  S  R  F  L  C  N  S  A  C  C  G  C  R  L  P  C  F  Y  Y  V  W  R  R  E  Y  K  S  H  F  S  S  R  C  *  A  G  H  *  L  Y  Q  *   : G  C  *  S  S  T  *  G  A  F  *  C  C  L  G  Y  N  W  C  A  R  Y  R  E  N  G  H  *  P  F  K  E  R  W  T  L  H  D  V  T   : G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12357" stop="12007"/>
                    <exon start="10578" stop="10351"/>
                    <exon start="10034" stop="9961"/>
                    <exon start="8445" stop="8286"/>
                    <exon start="8138" stop="8019"/>
                    <exon start="7908" stop="7800"/>
                    <exon start="6081" stop="5900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTRPLHSPLFCMYTLSLNHSTICIHFPQITEFAAQFLCKTMIRLRYRRIEIGTGDGGISNLGFGKRGIVTSCRAVLLPRFGGPEMLEFRDNVSVPDLKPNQVLVRARAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGNSVKSLTVGQDVFGALHPTAVRGTYTDYAILAEDELAPKPGSLSHVEASAIPFAALTAWRALKSTARIREGHRVLVIGGGGAVGFSAIQLAVAAGCHVSTTCGGESISRILAAGAEQAIDYTSEDAEVALKGHFDAVLDTIGVPDTERMGISLLKKGGHYMTLQGEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5894" stop="5634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7910" e_stop="7800"/>
            <exon e_start="6081" e_stop="5391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7910" e_stop="7800" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6081" e_stop="5391" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7910" stop="7800"/>
              <exon start="6081" stop="5519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5885" stop="5391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> R  G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </first_frame>
            <second_frame>  G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </second_frame>
            <third_frame>   G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7908" stop="7800"/>
                    <exon start="6081" stop="5900"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5894" stop="5634"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5733" stop="5530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENCATCKFSGHSQSFFFSSKYPSLFLCCVKHLSEPFIVLVTGKCIANGRTMSQGRCLLFFRKKRNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="13372" PGL_stop="15303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13372" e_stop="13415"/>
            <exon e_start="14845" e_stop="15303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.614"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.614">
            <gDNA_exon_boundary e_start="13372" e_stop="13415" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13416" i_stop="14844" i_length="1429"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="14845" e_stop="15303" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13372" stop="13415"/>
              <exon start="14845" stop="15303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14874" stop="15255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTAATCTTTGTCAATTTATATGAATTATTCTCTTTAT : ATATAACAATGATCTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGTAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAAGCCCTACTGAGGAACGAATGTTGTGAGCAAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</gDNA_template>
            <first_frame> F  F  L  N  L  C  Q  F  I  *  I  I  L  F  I :   Y  N  N  D  L  Q  F  H  *  V  D  Y  H  H  F  S  T  T  I  T  V  T  P  W  S  N  I  F  S  H  D  T  S  S  S  V  A  R  T  S  I  K  I  K  *  K  P  Y  *  G  T  N  V  V  S  K  K  N  P  E  L  *  S  Q  L  *  K  S  A  N  R  K  A  *  D  I  *  I  *  Y  K  S  L  A  V  L  Q  *  K  A  T  K  E  M  M  C  S  S  F  H  *  Q  N  Q  S  W  L  D  P  C  H  D  S  *  N  *  I  I  R  S  G  E  H  K  V  L  A  R  H  D  S  V  C  V  R  E  R  E  R  I  *  L  *  F  F  L  *  A  F  H  I  H   </first_frame>
            <second_frame>  F  F  L  I  F  V  N  L  Y  E  L  F  S  L   : Y  I  T  M  I  C  N  F  I  K  *  T  I  T  T  F  Q  L  Q  S  Q  *  L  L  G  P  I  F  F  H  M  I  Q  A  L  L  *  L  E  L  Q  S  K  S  N  K  S  P  T  E  E  R  M  L  *  A  K  K  I  Q  N  C  N  H  N  S  R  K  A  P  T  G  R  L  R  I  Y  E  S  S  T  K  A  W  Q  F  C  S  E  K  P  Q  K  R  *  C  V  P  P  F  T  S  R  T  S  L  G  W  I  H  V  M  I  L  E  T  E  *  *  G  L  A  S  T  K  F  W  H  A  M  I  V  C  V  *  E  R  E  R  G  S  N  Y  N  S  S  F  E  H  F  T  S  T  </second_frame>
            <third_frame>   F  S  *  S  L  S  I  Y  M  N  Y  S  L  Y  :  I  *  Q  *  S  A  I  S  L  S  R  L  S  P  L  F  N  Y  N  H  S  N  S  L  V  Q  Y  F  F  T  *  Y  K  L  F  C  S  *  N  F  N  Q  N  Q  I  K  A  L  L  R  N  E  C  C  E  Q  K  K  S  R  I  V  I  T  T  L  E  K  R  Q  Q  E  G  L  G  Y  M  N  L  V  Q  K  L  G  S  F  A  V  K  S  H  K  R  D  D  V  F  L  L  S  L  A  E  P  V  L  V  G  S  M  S  *  F  L  K  L  N  N  K  V  W  R  A  Q  S  S  G  T  P  *  *  C  V  C  E  R  E  R  E  D  L  I  I  I  L  P  L  S  I  S  H  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14959" stop="15180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFNQNQIKALLRNECCEQKKSRIVITTLEKRQQEGLGYMNLVQKLGSFAVKSHKRDDVFLLSLAEPVLVGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="15254" PGL_stop="14849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15254" e_stop="14849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="15254" e_stop="14849" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15254" stop="14849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGATTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</gDNA_template>
            <first_frame> S  L  S  H  T  H  Y  H  G  V  P  E  L  C  A  R  Q  T  L  L  F  S  F  K  N  H  D  M  D  P  T  K  T  G  S  A  S  E  R  R  N  T  S  S  L  L  W  L  F  T  A  K  L  P  S  F  C  T  R  F  I  Y  P  K  P  S  C  W  R  F  S  R  V  V  I  T  I  L  D  F  F  C  S  Q  H  S  F  L  S  R  A  F  I  *  F  *  L  K  F  *  L  Q  K  S  L  Y  H  V  K  K  Y  W  T  K  E  L  L  *  L  *  L  K  S  G  D  S  L  L  N  E  I  A  D  H  C  </first_frame>
            <second_frame>  L  S  H  T  H  T  I  M  A  C  Q  N  F  V  L  A  R  P  Y  Y  S  V  S  R  I  M  T  W  I  Q  P  R  L  V  L  L  V  K  G  G  T  H  H  L  F  C  G  F  S  L  Q  N  C  Q  A  F  V  L  D  S  Y  I  L  S  L  P  V  G  A  F  L  E  L  *  L  Q  F  W  I  F  F  A  H  N  I  R  S  S  V  G  L  L  F  D  F  D  *  S  S  S  Y  R  R  A  C  I  M  *  K  N  I  G  P  R  S  Y  C  D  C  S  *  K  V  V  I  V  Y  L  M  K  L  Q  I  I  V </second_frame>
            <third_frame>   S  L  T  H  T  L  S  W  R  A  R  T  L  C  S  P  D  L  I  I  Q  F  Q  E  S  *  H  G  S  N  Q  D  W  F  C  *  *  K  E  E  H  I  I  S  F  V  A  F  H  C  K  T  A  K  L  L  Y  *  I  H  I  S  *  A  F  L  L  A  L  F  *  S  C  D  Y  N  S  G  F  F  L  L  T  T  F  V  P  Q  *  G  F  Y  L  I  L  I  E  V  L  A  T  E  E  L  V  S  C  E  K  I  L  D  Q  G  V  T  V  I  V  V  E  K  W  *  *  S  T  *  *  N  C  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15254" stop="14973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHTHYHGVPELCARQTLLFSFKNHDMDPTKTGSASERRNTSSLLWLFTAKLPSFCTRFIYPKPSCWRFSRVVITILDFFCSQHSFLSRAFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15253" stop="15032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSHTHTIMACQNFVLARPYYSVSRIMTWIQPRLVLLVKGGTHHLFCGFSLQNCQAFVLDSYILSLPVGAFLEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="19892" PGL_stop="15443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19515" e_stop="19429"/>
            <exon e_start="18116" e_stop="18032"/>
            <exon e_start="17565" e_stop="17447"/>
            <exon e_start="16237" e_stop="16149"/>
            <exon e_start="16075" e_stop="16011"/>
            <exon e_start="15895" e_stop="15817"/>
            <exon e_start="15569" e_stop="15443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19515" e_stop="19429" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18116" e_stop="18032" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17565" e_stop="17447" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16237" e_stop="16149" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16075" e_stop="16011" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15817" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="15569" e_stop="15443" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19515" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17565" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19515" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17565" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> Y  C  R  K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  I  V  G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   L  *  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17561" stop="17447"/>
                    <exon start="16237" stop="16149"/>
                    <exon start="16075" stop="16011"/>
                    <exon start="15895" stop="15817"/>
                    <exon start="15569" stop="15444"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19791" e_stop="19727"/>
            <exon e_start="19649" e_stop="19577"/>
            <exon e_start="19507" e_stop="19429"/>
            <exon e_start="18116" e_stop="18032"/>
            <exon e_start="17555" e_stop="17447"/>
            <exon e_start="16237" e_stop="16149"/>
            <exon e_start="16075" e_stop="16011"/>
            <exon e_start="15895" e_stop="15817"/>
            <exon e_start="15569" e_stop="15443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19791" e_stop="19727" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19649" e_stop="19577" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19507" e_stop="19429" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18116" e_stop="18032" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="18031" i_stop="17556" i_length="476"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17555" e_stop="17447" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16237" e_stop="16149" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16075" e_stop="16011" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15817" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="15569" e_stop="15443" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19791" stop="19727"/>
              <exon start="19649" stop="19577"/>
              <exon start="19507" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17555" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19595" stop="19577"/>
              <exon start="19507" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17555" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  W :   S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19789" stop="19727"/>
                    <exon start="19649" stop="19577"/>
                    <exon start="19507" stop="19429"/>
                    <exon start="18116" stop="18032"/>
                    <exon start="17555" stop="17447"/>
                    <exon start="16237" stop="16149"/>
                    <exon start="16075" stop="16011"/>
                    <exon start="15895" stop="15817"/>
                    <exon start="15569" stop="15444"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQLKNPKKQFQLNPNWAQLRQQLNSNGFQKQLSNPSETENPNSILGKRKSRPSDDSGDATPNPLTPTSSDSSVTDVIGMDCEMVGVSSVGNRSALGRVTLVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19892" e_stop="19727"/>
            <exon e_start="19649" e_stop="19577"/>
            <exon e_start="19507" e_stop="19429"/>
            <exon e_start="18116" e_stop="18032"/>
            <exon e_start="17565" e_stop="17447"/>
            <exon e_start="16237" e_stop="16149"/>
            <exon e_start="16075" e_stop="16011"/>
            <exon e_start="15895" e_stop="15817"/>
            <exon e_start="15569" e_stop="15443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="19892" e_stop="19727" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19649" e_stop="19577" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19507" e_stop="19429" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18116" e_stop="18032" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17565" e_stop="17447" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16237" e_stop="16149" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16075" e_stop="16011" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15817" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="15569" e_stop="15443" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="19727"/>
              <exon start="19649" stop="19577"/>
              <exon start="19507" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17565" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> I  A  G  A  F  *  V  L  Q  P  F  T  C  W  E  L  K  A  D  V  K  V  I  E  P  P  R  G  E  E  D  K  N  G  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  *  Q  G  H  F  R  S  F  N  P  S  H  V  G  S  L  K  R  M  L  K  *  L  S  H  H  A  E  R  K  T  K  M  A  D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   S  R  G  I  L  G  P  S  T  L  H  M  L  G  A  *  S  G  C  *  S  N  *  A  T  T  R  R  G  R  Q  K  W  R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17561" stop="17447"/>
                    <exon start="16237" stop="16149"/>
                    <exon start="16075" stop="16011"/>
                    <exon start="15895" stop="15817"/>
                    <exon start="15569" stop="15444"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="24642" PGL_stop="24196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24642" e_stop="24196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="24642" e_stop="24196" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24642" stop="24321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24642" stop="24352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24641" stop="24196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTTCTAACGTTTGGTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  H  Y  I  H  F  C  C  I  K  L  D  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  S  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  M  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  N  V  W  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  I  I  Y  T  S  V  V  *  S  *  I  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  L  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  *  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  F  L  T  F  G  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  L  Y  T  L  L  L  Y  K  A  R  *  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  *  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  F  *  R  L  V  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="32376" PGL_stop="34874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32376" e_stop="32532"/>
            <exon e_start="32789" e_stop="32871"/>
            <exon e_start="34330" e_stop="34874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32376" e_stop="32532" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32789" e_stop="32871" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.788">
            <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="34330" e_stop="34874" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32376" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32376" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32447" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32452" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32452" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32460" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG : GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG : GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</gDNA_template>
            <first_frame> L  Q  E  K  *  R  G  Q  L  I  G  E  S  N  S  Q  L  A  V  N  R  K  I  S  T  F  P  L  K  P  L  F  N  Y  R  F  A  L  F  A  S  L  I  H  R  S  S  D  Q  P  L  I   : G  V  F  K  L  S  I  F  V  P  F  M  F  K  G  N  N  Q  G  R  S  *  Y  L  D  D  K  K  :  E  S  P  H  N  I  V  T  T  K  I  G  *  R  S  M  S  H  S  N  R  I  I  D  M  E  A  D  Q  Q  G  Q  E  F  F  H  S  A  P  C  M  F  Y  G  S  I  A  A  L  P  Q  P  T  V  H  A  V  V  P  A  P  V  N  A  G  N  I  Y  L  H  H  V  S  D  H  Q  E  G  P  L  T  Y  G  L  T  Q  F  N  G  I  Q  H  Q  H  P  A  S  N  P  D  L  A  I  S  A  S  N  H  Y  N  P  Y  M  A  V  P  S  A  S  G  D  F  P  I  P  V  N  H  G  P  L  D  R  L  H  T  S  S  H  N  I  F  G  M  N  S  D  Y  G  R  N  N  H  Y  M  D  D  V  R  G  S  Y  K  R  K  N  A  E  G  I  P  A  N  L  Q  Y  H  H  A  L  A   </first_frame>
            <second_frame>  Y  K  K  N  N  V  A  N  *  *  E  N  Q  T  A  N  *  Q  L  T  V  K  F  P  L  F  H  *  N  L  S  S  I  I  A  L  P  F  L  L  L  *  S  I  D  R  L  I  N  L  *  L  :  V  F  L  N  *  A  F  L  C  L  L  C  L  K  A  T  I  K  E  E  V  D  I  W  M  I  K  R :   N  H  P  T  T  L  *  P  R  R  *  A  K  G  A  C  H  T  V  I  A  *  L  I  W  K  Q  I  S  K  V  K  S  F  F  I  Q  H  L  A  C  F  T  G  A  *  R  L  Y  H  S  L  L  S  M  Q  *  Y  Q  L  P  *  M  L  V  I  Y  I  C  T  M  Y  Q  I  I  K  R  V  P  *  R  M  A  *  H  S  S  M  G  F  N  I  S  I  L  P  A  I  L  T  *  L  F  L  L  Q  I  I  T  I  L  T  W  L  F  H  P  L  L  E  I  S  L  F  Q  *  I  T  G  H  L  I  G  F  I  Q  V  L  T  T  S  L  E  *  I  Q  I  T  E  G  T  I  I  I  W  T  M  S  E  A  H  I  R  E  R  M  L  K  E  F  L  Q  I  F  N  I  I  M  L  W  Q  </second_frame>
            <third_frame>   T  R  K  I  T  W  P  I  N  R  R  I  K  Q  P  I  S  S  *  P  *  N  F  H  F  S  I  E  T  S  L  Q  L  S  L  C  P  F  C  F  F  D  P  S  I  V  *  S  T  F  N  W :   C  F  *  T  E  H  F  C  A  F  Y  V  *  R  Q  Q  S  R  K  K  L  I  F  G  *  *  K   : G  I  T  P  Q  H  C  N  H  E  D  R  L  K  E  H  V  T  Q  *  S  H  N  *  Y  G  S  R  S  A  R  S  R  V  F  S  F  S  T  L  H  V  L  R  E  H  S  G  F  T  T  A  Y  C  P  C  S  S  T  S  S  R  K  C  W  *  Y  I  F  A  P  C  I  R  S  S  R  G  S  L  N  V  W  L  D  T  V  Q  W  D  S  T  S  A  S  C  Q  Q  S  *  P  S  Y  F  C  F  K  S  L  Q  S  L  H  G  C  S  I  R  F  W  R  F  P  Y  S  S  K  S  R  A  T  *  S  A  S  Y  K  F  S  Q  H  L  W  N  E  F  R  L  R  K  E  Q  S  L  Y  G  R  C  Q  R  L  I  *  E  K  E  C  *  R  N  S  C  K  S  S  I  S  S  C  F  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34369" stop="34872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMSHSNRIIDMEADQQGQEFFHSAPCMFYGSIAALPQPTVHAVVPAPVNAGNIYLHHVSDHQEGPLTYGLTQFNGIQHQHPASNPDLAISASNHYNPYMAVPSASGDFPIPVNHGPLDRLHTSSHNIFGMNSDYGRNNHYMDDVRGSYKRKNAEGIPANLQYHHALA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32391" stop="32532"/>
                    <exon start="32789" stop="32853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQLIGESNSQLAVNRKISTFPLKPLFNYRFALFASLIHRSSDQPLIGVFKLSIFVPFMFKGNNQGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32970" e_stop="33733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="32970" e_stop="33733" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32970" stop="33733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32971" stop="33460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33026" stop="33260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCT</gDNA_template>
            <first_frame> G  R  L  C  S  F  M  C  L  A  W  V  Y  A  C  L  V  W  F  S  F  S  G  V  W  E  I  I  N  S  I  G  M  F  *  F  I  C  V  Y  A  S  C  Y  *  V  G  L  R  E  V  I  R  *  D  M  T  Q  F  Q  L  T  E  D  M  I  G  E  C  G  G  H  G  L  *  Q  K  V  G  R  *  Q  C  A  V  L  L  S  V  H  I  S  S  C  S  I  A  P  V  V  S  C  S  S  T  S  L  L  F  V  D  F  L  Y  L  N  Y  C  F  V  L  L  *  F  L  F  C  F  D  M  L  F  L  V  L  P  L  L  L  S  L  D  C  I  G  L  F  P  L  R  R  G  S  I  R  K  N  L  S  I  S  *  V  G  *  G  L  S  T  L  Y  P  L  Q  F  V  Y  *  S  L  L  L  L  S  C  N  F  *  V  V  F  F  H  E  H  Q  T  F  E  *  K  L  C  N  L  S  C  L  L  G  *  P  N  M  T  *  V  N  L  E  V  L  M  R  V  G  V  V  L  K  K  H  T  T  K  I  K  I  L  F  G  V  F  P  T  *  K  F  A  S  G  F  V  N   </first_frame>
            <second_frame>  E  D  Y  V  L  L  C  V  L  L  G  C  M  P  V  *  F  G  F  P  F  L  V  F  G  K  *  S  T  Q  L  E  C  F  D  L  Y  V  C  M  H  P  V  T  K  L  A  *  E  R  *  L  D  R  T  *  R  S  F  S  L  P  R  T  *  *  E  S  V  E  D  M  D  Y  D  R  R  L  V  G  S  S  A  L  S  C  C  P  Y  I  L  V  V  V  V  L  L  L  *  F  L  V  L  P  L  L  Y  C  L  L  I  S  C  I  S  I  I  V  L  F  C  C  S  F  C  S  V  S  I  C  C  F  L  Y  F  R  Y  F  F  R  W  T  A  L  D  C  F  H  *  D  E  D  L  S  G  R  T  F  L  S  L  R  L  G  K  V  *  V  L  S  T  L  S  S  L  F  I  N  R  C  C  C  C  R  V  I  S  R  *  C  F  F  M  S  I  K  H  L  N  E  N  C  V  I  C  L  A  S  S  G  N  Q  T  *  H  K  L  I  S  K  S  *  *  G  L  V  L  F  *  K  N  T  Q  L  K  S  R  F  Y  L  V  C  S  Q  L  E  N  L  H  P  G  L  S  I  </second_frame>
            <third_frame>   K  I  M  F  F  Y  V  S  C  L  G  V  C  L  S  S  L  V  F  L  F  W  C  L  G  N  N  Q  L  N  W  N  V  L  I  Y  M  C  V  C  I  L  L  L  S  W  L  E  R  G  D  *  I  G  H  D  A  V  S  A  Y  R  G  H  D  R  R  V  W  R  T  W  I  M  T  E  G  W  *  V  A  V  R  C  L  V  V  R  T  Y  *  *  L  *  Y  C  S  C  S  F  L  F  F  H  F  F  T  V  C  *  F  L  V  S  Q  L  L  F  C  F  V  V  V  F  V  L  F  R  Y  V  V  S  C  T  S  V  T  S  F  V  G  L  H  W  T  V  S  I  E  T  R  I  Y  Q  E  E  P  F  Y  L  L  G  W  V  R  F  E  Y  S  L  P  S  P  V  C  L  L  I  V  V  V  V  V  V  *  F  L  G  S  V  F  S  *  A  S  N  I  *  M  K  T  V  *  F  V  L  P  P  R  V  T  K  H  D  I  S  *  S  R  S  L  N  E  G  W  C  C  F  K  K  T  H  N  *  N  Q  D  F  I  W  C  V  P  N  L  K  I  C  I  R  V  C  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33302" stop="33526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVSQLLFCFVVVFVLFRYVVSCTSVTSFVGLHWTVSIETRIYQEEPFYLLGWVRFEYSLPSPVCLLIVVVVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="35582" PGL_stop="38086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35582" e_stop="35963"/>
            <exon e_start="36093" e_stop="36191"/>
            <exon e_start="36369" e_stop="36536"/>
            <exon e_start="37861" e_stop="38086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="35582" e_stop="35963" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36093" e_stop="36191" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36369" e_stop="36536" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="37861" e_stop="38086" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35582" stop="35859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35604" stop="35963"/>
              <exon start="36093" stop="36191"/>
              <exon start="36369" stop="36536"/>
              <exon start="37861" stop="37915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35727" stop="35963"/>
              <exon start="36093" stop="36191"/>
              <exon start="36369" stop="36536"/>
              <exon start="37861" stop="37981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35908" stop="35963"/>
              <exon start="36093" stop="36191"/>
              <exon start="36369" stop="36536"/>
              <exon start="37861" stop="38086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTTGCGTAGATGCTGGAAACATGGGTTTGCGAGGTTATCATATGACATCCAGCAATGGAGGTTTGACTAGTTTTCCGCATCCACCCATTCCTCAAGGGCTCCCAGGACTTCATCATCTGCCACCTAATATTCAAGGAATGAGAGGCCAGCCTATCTCCTTCCCTCCGCAAATGACAGCATCATCCTCACACAGACACCTACCAAATAATTCGTCCAATATCACCACGAACCTAATGCAAGGCGTTGTAGAGGCAGGACCCAGATATATGCCCTCCCTTCCAACTGGCTTTGGGTTGTATCGACCTCATCGAAGGGCTATCGTGCTTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC : GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG : GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG : ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</gDNA_template>
            <first_frame> G  L  R  R  C  W  K  H  G  F  A  R  L  S  Y  D  I  Q  Q  W  R  F  D  *  F  S  A  S  T  H  S  S  R  A  P  R  T  S  S  S  A  T  *  Y  S  R  N  E  R  P  A  Y  L  L  P  S  A  N  D  S  I  I  L  T  Q  T  P  T  K  *  F  V  Q  Y  H  H  E  P  N  A  R  R  C  R  G  R  T  Q  I  Y  A  L  P  S  N  W  L  W  V  V  S  T  S  S  K  G  Y  R  A  *  K  K  Y  *  T  S  E  P  S  *  H  E  S  S  A  R  R   : R  S  G  N  A  G  C  F  G  L  P  *  S  *  Q  S  H  *  S  A  Q  R  Y  A  F  R  R  R  S  H  V  L  R   : G  A  S  C  T  G  G  A  D  W  Q  C  N  N  W  I  V  R  *  N  N  R  *  P  L  E  N  K  I  I  F  A  P  R  Y  S  L  H  P  G  N  C  C  M  F  G  S  R  S  *  F  L  C  H  M  P   : D  *  L  Q  Q  A  R  N  Y  R  N  S  *  L  R  A  R  I  S  C  R  M  R  K  E  V  V  G  C  E  E  H  L  P  Y  L  Q  I  H  R  I  V  N  R  K  K  R  F  V  K  T  G  S  W  L  V  G  G  *  I  I  I  R  V  G  H  F  V  L  L  L  N  I  C  S   </first_frame>
            <second_frame>  G  C  V  D  A  G  N  M  G  L  R  G  Y  H  M  T  S  S  N  G  G  L  T  S  F  P  H  P  P  I  P  Q  G  L  P  G  L  H  H  L  P  P  N  I  Q  G  M  R  G  Q  P  I  S  F  P  P  Q  M  T  A  S  S  S  H  R  H  L  P  N  N  S  S  N  I  T  T  N  L  M  Q  G  V  V  E  A  G  P  R  Y  M  P  S  L  P  T  G  F  G  L  Y  R  P  H  R  R  A  I  V  L  E  R  N  T  R  H  Q  N  L  P  N  M  R  V  L  P  E  D  :  G  V  A  M  L  D  V  S  G  Y  H  E  V  N  N  P  I  D  Q  H  R  D  M  R  L  D  V  D  H  M  S  Y  E  :  E  L  L  A  L  G  E  Q  I  G  N  V  T  T  G  L  S  D  E  I  I  V  N  R  L  K  T  R  S  F  S  P  P  V  I  P  C  T  L  E  T  A  A  C  L  D  H  E  A  D  F  C  V  I  C  Q  :  T  D  Y  N  K  Q  E  T  I  G  T  L  D  C  G  H  E  Y  H  A  E  C  V  K  K  W  L  V  V  K  N  T  C  P  I  C  K  S  T  G  L  S  I  E  R  K  D  L  *  K  Q  G  V  G  W  L  V  D  E  *  L  *  E  W  D  I  L  F  S  C  *  I  F  V  L  </second_frame>
            <third_frame>   V  A  *  M  L  E  T  W  V  C  E  V  I  I  *  H  P  A  M  E  V  *  L  V  F  R  I  H  P  F  L  K  G  S  Q  D  F  I  I  C  H  L  I  F  K  E  *  E  A  S  L  S  P  S  L  R  K  *  Q  H  H  P  H  T  D  T  Y  Q  I  I  R  P  I  S  P  R  T  *  C  K  A  L  *  R  Q  D  P  D  I  C  P  P  F  Q  L  A  L  G  C  I  D  L  I  E  G  L  S  C  L  K  E  I  L  D  I  R  T  F  L  T  *  E  F  C  Q  K  T :   E  W  Q  C  W  M  F  R  A  T  M  K  L  T  I  P  L  I  S  T  E  I  C  V  *  T  *  I  T  C  P  T  R :   S  F  L  H  W  G  S  R  L  A  M  *  Q  L  D  C  Q  M  K  *  S  L  T  A  *  K  Q  D  H  F  R  P  P  L  F  L  A  P  W  K  L  L  H  V  W  I  T  K  L  I  S  V  S  Y  A  R :   L  T  T  T  S  K  K  L  *  E  L  L  I  A  G  T  N  I  M  Q  N  A  *  R  S  G  W  L  *  R  T  L  A  L  S  A  N  P  P  D  C  Q  *  K  E  K  I  C  E  N  R  E  L  V  G  W  W  M  N  N  Y  K  S  G  T  F  C  S  L  V  K  Y  L  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35583" stop="35963"/>
                    <exon start="36093" stop="36191"/>
                    <exon start="36369" stop="36536"/>
                    <exon start="37861" stop="38007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCVDAGNMGLRGYHMTSSNGGLTSFPHPPIPQGLPGLHHLPPNIQGMRGQPISFPPQMTASSSHRHLPNNSSNITTNLMQGVVEAGPRYMPSLPTGFGLYRPHRRAIVLERNTRHQNLPNMRVLPEDGVAMLDVSGYHEVNNPIDQHRDMRLDVDHMSYEELLALGEQIGNVTTGLSDEIIVNRLKTRSFSPPVIPCTLETAACLDHEADFCVICQTDYNKQETIGTLDCGHEYHAECVKKWLVVKNTCPICKSTGLSIERKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36475" e_stop="36937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="36475" e_stop="36937" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36475" stop="36937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCC</gDNA_template>
            <first_frame> L  A  P  W  K  L  L  H  V  W  I  T  K  L  I  S  V  S  Y  A  R  Y  *  H  *  I  I  L  *  V  G  L  D  L  P  V  T  F  A  G  I  T  L  G  M  A  L  L  Q  S  P  F  L  P  S  I  S  F  *  V  L  I  K  Y  S  N  K  D  K  S  D  G  C  K  L  L  L  K  Q  S  H  *  *  V  L  V  C  Y  S  P  C  F  S  L  F  A  F  S  F  K  S  V  *  K  R  M  P  A  P  F  S  D  N  S  L  I  L  T  F  H  M  T  Y  F  R  P  Q  D  *  R  A  F  W  Y  I  L  Y  I  F  S  L  R  Q  Q  D  S  K  V  F  F  F  L  K  L  </first_frame>
            <second_frame>  L  H  P  G  N  C  C  M  F  G  S  R  S  *  F  L  C  H  M  P  G  I  N  T  K  L  Y  F  K  L  D  *  I  C  L  *  L  L  Q  G  S  L  W  G  W  L  Y  F  S  L  L  F  S  R  P  F  H  F  R  C  *  L  S  T  L  T  K  T  N  Q  M  G  V  S  S  C  L  N  N  H  I  S  R  F  *  F  V  T  P  P  V  S  V  C  L  P  F  L  L  S  P  F  K  K  E  C  L  L  P  F  L  I  I  L  *  F  *  L  S  T  *  H  I  L  D  H  K  I  K  G  H  F  G  T  F  Y  I  S  L  V  *  D  N  K  I  Q  K  F  S  F  F  L  N  S </second_frame>
            <third_frame>   C  T  L  E  T  A  A  C  L  D  H  E  A  D  F  C  V  I  C  Q  V  L  T  L  N  Y  T  L  S  W  I  R  F  A  C  D  F  C  R  D  H  S  G  D  G  S  T  S  V  S  F  S  P  V  H  F  I  L  G  A  D  *  V  L  *  Q  R  Q  I  R  W  V  *  A  L  A  *  T  I  T  L  V  G  F  S  L  L  L  P  L  F  Q  F  V  C  L  F  F  *  V  R  L  K  K  N  A  C  S  L  F  *  *  F  F  N  S  N  F  P  H  D  I  F  *  T  T  R  L  K  G  I  L  V  H  F  I  Y  L  *  F  K  T  T  R  F  K  S  F  L  F  S  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="42122" PGL_stop="37328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42122" e_stop="41822"/>
            <exon e_start="39790" e_stop="39093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42122" e_stop="41822" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39790" e_stop="39093" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42122" stop="41822"/>
              <exon start="39790" stop="39243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="41822"/>
              <exon start="39790" stop="39359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42108" stop="41822"/>
              <exon start="39790" stop="39474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42102" stop="41822"/>
              <exon start="39790" stop="39159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42098" stop="41822"/>
              <exon start="39790" stop="39366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42093" stop="41822"/>
              <exon start="39790" stop="39439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42083" stop="41822"/>
              <exon start="39790" stop="39686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42049" stop="41822"/>
              <exon start="39790" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42037" stop="41822"/>
              <exon start="39790" stop="39438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41945" stop="41822"/>
              <exon start="39790" stop="39153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41937" stop="41822"/>
              <exon start="39790" stop="39146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39779" stop="39151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39747" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39609" stop="39146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39562" stop="39093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39549" stop="39125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226645" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39504" stop="39125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226792" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39485" stop="39100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240449" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39484" stop="39136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39381" stop="39146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG : GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAACATGATTT</gDNA_template>
            <first_frame> I  C  F  P  S  *  N  S  Q  L  S  P  *  V  N  Q  N  S  *  F  C  *  I  N  R  R  W  Q  V  G  I  E  L  R  M  I  T  I  I  C  S  S  W  C  *  L  E  I  L  V  *  E  N  P  I  S  F  L  D  S  Q  E  T  S  S  I  L  N  Q  S  L  L  L  V  L  N  L  L  P  V  A  L  R  *  M  I  R  S  L  R  L  R  F  G  I  L  L  D  K  K   : G  I  V  Q  L  Q  V  H  T  T  E  G  L  S  V  H  *  L  S  T  I  S  L  D  M  S  H  L  K  M  L  R  D  G  *  K  N  F  E  T  I  P  T  K  I  *  S  *  C  S  L  G  T  R  P  T  Y  V  T  C  V  L  F  Q  Q  R  M  P  R  P  L  L  K  E  R  V  P  S  I  W  R  L  Q  H  L  N  P  *  T  L  R  M  R  L  Q  K  Y  *  Q  R  Y  T  G  W  S  V  G  K  H  S  K  L  G  M  I  L  L  R  C  R  R  G  K  L  *  M  L  A  R  M  M  F  Q  L  *  K  K  L  V  A  A  L  C  K  L  K  K  S  R  N  R  *  S  *  T  F  K  W  L  L  L  *  L  H  *  V  F  S  V  L  N  I  L  G  I  I  P  P  L  Y  C  F  I  N  L  P  L  V  C  T  L  Y  P  I  L  L  V  F  *  L  F  V  K  E  F  Y  Y  Y  L  Y  T  F  T  L  Y  Y  Y  F  V  C  L  W  H  L  M  S  L  N  R  E  T  *  F </first_frame>
            <second_frame>  F  V  F  L  L  R  T  L  S  Y  L  L  K  *  T  K  I  V  D  F  V  E  L  I  A  D  G  R  W  V  *  S  *  G  *  L  R  L  S  V  Q  V  G  V  N  W  R  F  W  C  R  K  I  Q  S  P  F  S  I  L  K  K  R  V  Q  S  *  I  K  V  Y  Y  W  C  *  I  C  Y  P  *  H  *  G  R  *  *  D  R  *  G  S  D  L  G  Y  C  W  T  R  K  :  V  S  C  N  Y  K  C  I  L  Q  R  G  C  R  C  I  S  C  L  R  Y  H  S  T  C  H  I  *  K  C  *  E  M  V  K  R  T  S  R  P  Y  R  P  K  Y  S  H  N  A  R  W  E  Q  G  R  L  T  S  L  A  C  C  F  N  R  G  C  Q  G  L  C  *  K  R  E  Y  L  L  Y  G  D  F  S  T  *  I  L  E  R  *  E  C  V  Y  R  S  T  D  R  D  I  Q  G  G  L  S  E  S  T  R  S  W  G  *  S  Y  C  V  A  E  G  A  N  Y  K  C  W  Q  G  *  C  F  S  C  E  K  S  W  L  L  L  C  V  S  *  K  N  Q  E  I  G  E  V  K  L  S  N  G  F  S  Y  S  C  I  E  Y  S  Q  F  *  I  S  *  E  L  F  H  L  C  I  V  S  L  T  Y  L  *  F  V  L  C  T  L  F  C  *  S  F  D  S  L  *  K  S  F  T  I  I  Y  I  L  L  H  Y  I  I  I  L  Y  V  Y  G  I  L  *  V  *  I  E  K  H  D   </second_frame>
            <third_frame>   L  F  S  F  L  E  L  S  A  I  S  L  S  K  P  K  *  L  I  L  L  N  *  S  Q  M  A  G  G  Y  R  A  E  D  D  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  S  R  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  R  S  I  K  V  D  D  K  I  V  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  V  V  Y  D  I  T  R  H  V  T  F  E  N  V  E  R  W  L  K  E  L  R  D  H  T  D  Q  N  I  V  I  M  L  V  G  N  K  A  D  L  R  H  L  R  A  V  S  T  E  D  A  K  A  F  A  E  R  E  S  T  F  Y  M  E  T  S  A  L  E  S  L  N  V  E  N  A  F  T  E  V  L  T  E  I  Y  R  V  V  C  R  K  A  L  E  V  G  D  D  P  T  A  L  P  K  G  Q  T  I  N  V  G  K  D  D  V  S  A  V  K  K  V  G  C  C  S  V  *  A  K  K  I  K  K  S  V  K  L  N  F  Q  M  A  S  P  I  V  A  L  S  I  L  S  F  E  Y  L  R  N  Y  S  T  S  V  L  F  H  *  L  T  F  S  L  Y  F  V  P  Y  F  A  S  L  L  T  L  C  K  R  V  L  L  L  F  I  Y  F  Y  I  I  L  L  F  C  M  F  M  A  S  Y  E  F  K  *  R  N  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42051" stop="41822"/>
                    <exon start="39790" stop="39361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQMAGGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIKVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERESTFYMETSALESLNVENAFTEVLTEIYRVVCRKALEVGDDPTALPKGQTINVGKDDVSAVKKVGCCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42122" e_stop="41822"/>
            <exon e_start="39790" e_stop="39166"/>
            <exon e_start="37346" e_stop="37328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.070" e_score="0.954"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42122" e_stop="41822" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="39790" e_stop="39166" e_length="625"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.070">
            <gDNA_intron_boundary i_start="39165" i_stop="37347" i_length="1819"/>
          </intron>
          <exon e_serial="3" e_score="0.737">
            <gDNA_exon_boundary e_start="37346" e_stop="37328" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42122" stop="41822"/>
              <exon start="39790" stop="39243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42118" stop="41822"/>
              <exon start="39790" stop="39359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42108" stop="41822"/>
              <exon start="39790" stop="39474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="41822"/>
              <exon start="39790" stop="39498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42098" stop="41822"/>
              <exon start="39790" stop="39366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42093" stop="41822"/>
              <exon start="39790" stop="39439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42083" stop="41822"/>
              <exon start="39790" stop="39686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42049" stop="41822"/>
              <exon start="39790" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42037" stop="41822"/>
              <exon start="39790" stop="39438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41964" stop="41822"/>
              <exon start="39790" stop="39166"/>
              <exon start="37346" stop="37328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585748" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG : GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTT : GAAAAGAAAAAGAAATCAA</gDNA_template>
            <first_frame> I  C  F  P  S  *  N  S  Q  L  S  P  *  V  N  Q  N  S  *  F  C  *  I  N  R  R  W  Q  V  G  I  E  L  R  M  I  T  I  I  C  S  S  W  C  *  L  E  I  L  V  *  E  N  P  I  S  F  L  D  S  Q  E  T  S  S  I  L  N  Q  S  L  L  L  V  L  N  L  L  P  V  A  L  R  *  M  I  R  S  L  R  L  R  F  G  I  L  L  D  K  K   : G  I  V  Q  L  Q  V  H  T  T  E  G  L  S  V  H  *  L  S  T  I  S  L  D  M  S  H  L  K  M  L  R  D  G  *  K  N  F  E  T  I  P  T  K  I  *  S  *  C  S  L  G  T  R  P  T  Y  V  T  C  V  L  F  Q  Q  R  M  P  R  P  L  L  K  E  R  V  P  S  I  W  R  L  Q  H  L  N  P  *  T  L  R  M  R  L  Q  K  Y  *  Q  R  Y  T  G  W  S  V  G  K  H  S  K  L  G  M  I  L  L  R  C  R  R  G  K  L  *  M  L  A  R  M  M  F  Q  L  *  K  K  L  V  A  A  L  C  K  L  K  K  S  R  N  R  *  S  *  T  F  K  W  L  L  L  *  L  H  *  V  F  S  V  L  N  I  L  G  I  I  P  P  L  Y  C  F  I  N  L  P  L  V  C  T  L  Y  P  I  L  L  V  F  *  L  F  V  K  E  F  Y  Y  Y  L :   K  R  K  R  N  Q </first_frame>
            <second_frame>  F  V  F  L  L  R  T  L  S  Y  L  L  K  *  T  K  I  V  D  F  V  E  L  I  A  D  G  R  W  V  *  S  *  G  *  L  R  L  S  V  Q  V  G  V  N  W  R  F  W  C  R  K  I  Q  S  P  F  S  I  L  K  K  R  V  Q  S  *  I  K  V  Y  Y  W  C  *  I  C  Y  P  *  H  *  G  R  *  *  D  R  *  G  S  D  L  G  Y  C  W  T  R  K  :  V  S  C  N  Y  K  C  I  L  Q  R  G  C  R  C  I  S  C  L  R  Y  H  S  T  C  H  I  *  K  C  *  E  M  V  K  R  T  S  R  P  Y  R  P  K  Y  S  H  N  A  R  W  E  Q  G  R  L  T  S  L  A  C  C  F  N  R  G  C  Q  G  L  C  *  K  R  E  Y  L  L  Y  G  D  F  S  T  *  I  L  E  R  *  E  C  V  Y  R  S  T  D  R  D  I  Q  G  G  L  S  E  S  T  R  S  W  G  *  S  Y  C  V  A  E  G  A  N  Y  K  C  W  Q  G  *  C  F  S  C  E  K  S  W  L  L  L  C  V  S  *  K  N  Q  E  I  G  E  V  K  L  S  N  G  F  S  Y  S  C  I  E  Y  S  Q  F  *  I  S  *  E  L  F  H  L  C  I  V  S  L  T  Y  L  *  F  V  L  C  T  L  F  C  *  S  F  D  S  L  *  K  S  F  T  I  I   : *  K  E  K  E  I   </second_frame>
            <third_frame>   L  F  S  F  L  E  L  S  A  I  S  L  S  K  P  K  *  L  I  L  L  N  *  S  Q  M  A  G  G  Y  R  A  E  D  D  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  S  R  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  R  S  I  K  V  D  D  K  I  V  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  V  V  Y  D  I  T  R  H  V  T  F  E  N  V  E  R  W  L  K  E  L  R  D  H  T  D  Q  N  I  V  I  M  L  V  G  N  K  A  D  L  R  H  L  R  A  V  S  T  E  D  A  K  A  F  A  E  R  E  S  T  F  Y  M  E  T  S  A  L  E  S  L  N  V  E  N  A  F  T  E  V  L  T  E  I  Y  R  V  V  C  R  K  A  L  E  V  G  D  D  P  T  A  L  P  K  G  Q  T  I  N  V  G  K  D  D  V  S  A  V  K  K  V  G  C  C  S  V  *  A  K  K  I  K  K  S  V  K  L  N  F  Q  M  A  S  P  I  V  A  L  S  I  L  S  F  E  Y  L  R  N  Y  S  T  S  V  L  F  H  *  L  T  F  S  L  Y  F  V  P  Y  F  A  S  L  L  T  L  C  K  R  V  L  L  L  F  :  E  K  K  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42051" stop="41822"/>
                    <exon start="39790" stop="39361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQMAGGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIKVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERESTFYMETSALESLNVENAFTEVLTEIYRVVCRKALEVGDDPTALPKGQTINVGKDDVSAVKKVGCCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38053" e_stop="37853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="38053" e_stop="37853" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38053" stop="37853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACTCTTATAATTATTCATCCACCAACCAACCAACTCCCTGTTTTCACAAATCTTTTCTTTCTATTGACAATCCGGTGGATTTGCAGATAGGGCAAGTGTTCTTCACAACCAACCACTTCTTTACGCATTCTGCATGATATTCGTGCCCGCAATCAAGAGTTCCTATAGTTTCTTGCTTGTTGTAGTCAGTCTGAAATT</gDNA_template>
            <first_frame> P  T  L  I  I  I  H  P  P  T  N  Q  L  P  V  F  T  N  L  F  F  L  L  T  I  R  W  I  C  R  *  G  K  C  S  S  Q  P  T  T  S  L  R  I  L  H  D  I  R  A  R  N  Q  E  F  L  *  F  L  A  C  C  S  Q  S  E  I </first_frame>
            <second_frame>  P  L  L  *  L  F  I  H  Q  P  T  N  S  L  F  S  Q  I  F  S  F  Y  *  Q  S  G  G  F  A  D  R  A  S  V  L  H  N  Q  P  L  L  Y  A  F  C  M  I  F  V  P  A  I  K  S  S  Y  S  F  L  L  V  V  V  S  L  K   </second_frame>
            <third_frame>   H  S  Y  N  Y  S  S  T  N  Q  P  T  P  C  F  H  K  S  F  L  S  I  D  N  P  V  D  L  Q  I  G  Q  V  F  F  T  T  N  H  F  F  T  H  S  A  *  Y  S  C  P  Q  S  R  V  P  I  V  S  C  L  L  *  S  V  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="39122" PGL_stop="39756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39122" e_stop="39756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="39122" e_stop="39756" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39122" stop="39756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCCATAAACATACAAAATAATAATATAATGTAAAAGTATATAAATAATAGTAAAACTCTTTTACAAAGAGTCAAAAGACTAGCAAAATAGGGTACAAAGTACAAACTAAAGGTAAGTTAATGAAACAATACAGAGGTGGAATAATTCCTAAGATATTCAAAACTGAGAATACTCAATGCAACTATAGGAGAAGCCATTTGAAAGTTTAACTTCACCGATTTCTTGATTTTTTTAGCTTACACAGAGCAGCAACCAACTTTTTTCACAGCTGAAACATCATCCTTGCCAACATTTATAGTTTGCCCCTTCGGCAACGCAGTAGGATCATCCCCAACTTCGAGTGCTTTCCGACAGACCACCCTGTATATCTCTGTCAGTACTTCTGTAAACGCATTCTCAACGTTCAAGGATTCAAGTGCTGAAGTCTCCATATAGAAGGTACTCTCTCTTTCAGCAAAGGCCTTGGCATCCTCTGTTGAAACAGCACGCAAGTGACGTAAGTCGGCCTTGTTCCCAACGAGCATTATGACTATATTTTGGTCGGTATGGTCTCGAAGTTCTTTTAACCATCTCTCAACATTTTCAAATGTGACATGTCGAGTGATATCGTAGACAACTAATGCACCGACAGC</gDNA_template>
            <first_frame> D  A  I  N  I  Q  N  N  N  I  M  *  K  Y  I  N  N  S  K  T  L  L  Q  R  V  K  R  L  A  K  *  G  T  K  Y  K  L  K  V  S  *  *  N  N  T  E  V  E  *  F  L  R  Y  S  K  L  R  I  L  N  A  T  I  G  E  A  I  *  K  F  N  F  T  D  F  L  I  F  L  A  Y  T  E  Q  Q  P  T  F  F  T  A  E  T  S  S  L  P  T  F  I  V  C  P  F  G  N  A  V  G  S  S  P  T  S  S  A  F  R  Q  T  T  L  Y  I  S  V  S  T  S  V  N  A  F  S  T  F  K  D  S  S  A  E  V  S  I  *  K  V  L  S  L  S  A  K  A  L  A  S  S  V  E  T  A  R  K  *  R  K  S  A  L  F  P  T  S  I  M  T  I  F  W  S  V  W  S  R  S  S  F  N  H  L  S  T  F  S  N  V  T  C  R  V  I  S  *  T  T  N  A  P  T   </first_frame>
            <second_frame>  M  P  *  T  Y  K  I  I  I  *  C  K  S  I  *  I  I  V  K  L  F  Y  K  E  S  K  D  *  Q  N  R  V  Q  S  T  N  *  R  *  V  N  E  T  I  Q  R  W  N  N  S  *  D  I  Q  N  *  E  Y  S  M  Q  L  *  E  K  P  F  E  S  L  T  S  P  I  S  *  F  F  *  L  T  Q  S  S  N  Q  L  F  S  Q  L  K  H  H  P  C  Q  H  L  *  F  A  P  S  A  T  Q  *  D  H  P  Q  L  R  V  L  S  D  R  P  P  C  I  S  L  S  V  L  L  *  T  H  S  Q  R  S  R  I  Q  V  L  K  S  P  Y  R  R  Y  S  L  F  Q  Q  R  P  W  H  P  L  L  K  Q  H  A  S  D  V  S  R  P  C  S  Q  R  A  L  *  L  Y  F  G  R  Y  G  L  E  V  L  L  T  I  S  Q  H  F  Q  M  *  H  V  E  *  Y  R  R  Q  L  M  H  R  Q  </second_frame>
            <third_frame>   C  H  K  H  T  K  *  *  Y  N  V  K  V  Y  K  *  *  *  N  S  F  T  K  S  Q  K  T  S  K  I  G  Y  K  V  Q  T  K  G  K  L  M  K  Q  Y  R  G  G  I  I  P  K  I  F  K  T  E  N  T  Q  C  N  Y  R  R  S  H  L  K  V  *  L  H  R  F  L  D  F  F  S  L  H  R  A  A  T  N  F  F  H  S  *  N  I  I  L  A  N  I  Y  S  L  P  L  R  Q  R  S  R  I  I  P  N  F  E  C  F  P  T  D  H  P  V  Y  L  C  Q  Y  F  C  K  R  I  L  N  V  Q  G  F  K  C  *  S  L  H  I  E  G  T  L  S  F  S  K  G  L  G  I  L  C  *  N  S  T  Q  V  T  *  V  G  L  V  P  N  E  H  Y  D  Y  I  L  V  G  M  V  S  K  F  F  *  P  S  L  N  I  F  K  C  D  M  S  S  D  I  V  D  N  *  C  T  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39326" stop="39559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFNFTDFLIFLAYTEQQPTFFTAETSSLPTFIVCPFGNAVGSSPTSSAFRQTTLYISVSTSVNAFSTFKDSSAEVSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="56825" PGL_stop="47396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56621" e_stop="56476"/>
            <exon e_start="55376" e_stop="55243"/>
            <exon e_start="53874" e_stop="53789"/>
            <exon e_start="53378" e_stop="53338"/>
            <exon e_start="52786" e_stop="52653"/>
            <exon e_start="50025" e_stop="49723"/>
            <exon e_start="47417" e_stop="47396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.430" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56621" e_stop="56476" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.868">
            <gDNA_intron_boundary i_start="56475" i_stop="55377" i_length="1099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55376" e_stop="55243" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53874" e_stop="53789" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.430">
            <gDNA_intron_boundary i_start="53788" i_stop="53379" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53378" e_stop="53338" e_length="41"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53337" i_stop="52787" i_length="551"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52786" e_stop="52653" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.978">
            <gDNA_intron_boundary i_start="52652" i_stop="50026" i_length="2627"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="50025" e_stop="49723" e_length="303"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49722" i_stop="47418" i_length="2305"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47417" e_stop="47396" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56621" stop="56476"/>
              <exon start="55376" stop="55243"/>
              <exon start="53874" stop="53789"/>
              <exon start="53378" stop="53338"/>
              <exon start="52786" stop="52653"/>
              <exon start="50025" stop="49723"/>
              <exon start="47417" stop="47396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56620" stop="56476"/>
              <exon start="55376" stop="55243"/>
              <exon start="53874" stop="53789"/>
              <exon start="53378" stop="53338"/>
              <exon start="52786" stop="52653"/>
              <exon start="50025" stop="49927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG : ATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG : ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG : ATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAG : GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGG : GAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTCAATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAG : GTGACTGGGAACTGCTGACTTA</gDNA_template>
            <first_frame> *  *  *  C  A  G  R  N  A  K  *  Q  F  S  A  T  R  L  L  H  E  F  F  *  K  K  *  P  *  R  F  F  Y  G  S  E  W  *  *  S  L  S  F  H  I  L  *  S  * :   *  K  F  R  G  C  S  Q  Y  A  S  G  P  A  *  *  Q  L  *  E  C  N  K  V  F  T  T  C  S  A  F  Q  S  T  S  T  R  G  F  S  S  F  N  T   : D  A  A  A  R  G  S  G  E  G  G  S  *  *  G  G  K  I  Y  S  I  H  Q  H  I  I  S  V  E  :  I  S  V  L  I  T  L  P  I  V  M  F  K  R :   L  K  A  T  I  L  E  H  F  D  S  G  N  Y  V  K  L  S  A  I  H  E  E  N  L  E  K  D  P  A  C  S  H  S  L  G  R  L  I  I  L  H  R  R   : G  E  Y  S  T  E  K  L  M  E  M  I  A  L  H  L  D  A  T  H  A  N  C  D  T  W  K  E  L  A  C  C  F  L  R  L  F  Q  C  E  E  D  C  M  S  V  C  S  N  G  E  D  S  E  K  Q  K  F  T  K  W  I  S  Q  I  P  K  I  F  S  D  Y  E  S  S  K  S  W  R  L  R  C  R  W  W  L  T  H  Y  F  S  Q  T  I  L  T  S  D  I  A  S   : G  D  W  E  L  L  T   </first_frame>
            <second_frame>  D  D  N  V  P  G  E  T  Q  N  D  N  F  Q  P  Q  D  F  Y  M  N  S  S  E  R  S  D  R  E  G  S  S  M  D  Q  S  G  D  D  P  Y  H  S  I  F  Y  N  R   : D  E  N  L  E  D  V  L  N  M  H  R  A  L  R  N  D  N  Y  K  N  A  I  K  Y  L  R  H  A  L  H  S  S  P  P  V  L  E  A  F  H  P  L  I  Q  :  M  L  L  L  G  D  Q  V  K  E  A  L  D  E  V  E  K  F  T  P  Y  T  N  T  S  F  Q  L  R :   S  L  S  *  *  H  F  Q  L  L  C  S  K   : G  *  K  L  L  S  W  S  I  L  T  A  V  T  M  S  N  F  Q  Q  S  M  R  K  I  W  R  K  I  L  L  V  A  T  H  W  G  D  S  S  S  C  I  E  G  :  E  S  I  A  L  K  S  *  W  K  *  *  L  C  I  W  M  L  L  M  Q  I  V  T  H  G  R  S  *  L  V  A  S  *  G  F  F  N  V  K  K  I  A  C  L  C  A  P  T  V  K  I  V  R  S  K  N  S  Q  N  G  L  V  R  F  Q  K  Y  L  A  I  M  S  L  A  S  H  G  G  S  V  A  D  G  G  *  L  I  T  S  A  R  L  Y  S  L  Q  I  L  L  Q  :  V  T  G  N  C  *  L  </second_frame>
            <third_frame>   M  I  M  C  R  E  K  R  K  M  T  I  F  S  H  K  T  F  T  *  I  L  L  K  E  V  T  V  K  V  L  L  W  I  R  V  V  M  I  P  I  I  P  Y  S  I  I  V  :  M  K  I  *  R  M  F  S  I  C  I  G  P  C  V  M  T  T  I  R  M  Q  *  S  I  Y  D  M  L  C  I  P  V  H  Q  Y  *  R  L  F  I  L  *  Y  R :   C  C  C  S  G  I  R  *  R  R  L  L  M  R  W  K  N  L  L  H  T  P  T  H  H  F  S  *   : D  L  C  P  D  N  T  S  N  C  Y  V  Q  K  :  V  E  S  Y  Y  L  G  A  F  *  Q  R  *  L  C  Q  T  F  S  N  P  *  G  K  F  G  E  R  S  C  L  *  P  L  I  G  E  T  H  H  L  A  *  K  G :   R  V  *  H  *  K  A  D  G  N  D  S  F  A  F  G  C  Y  S  C  K  L  *  H  M  E  G  V  S  L  L  L  P  E  A  F  S  M  *  R  R  L  H  V  C  V  L  Q  R  *  R  *  *  E  A  K  I  H  K  M  D  *  S  D  S  K  N  I  *  R  L  *  V  *  Q  V  M  E  A  P  L  Q  M  V  A  D  S  L  L  Q  P  D  Y  T  H  F  R  Y  C  F  R :   *  L  G  T  A  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53833" stop="53789"/>
                    <exon start="53378" stop="53338"/>
                    <exon start="52786" stop="52653"/>
                    <exon start="50025" stop="49723"/>
                    <exon start="47417" stop="47398"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGKIYSIHQHIISVEISVLITLPIVMFKRLKATILEHFDSGNYVKLSAIHEENLEKDPACSHSLGRLIILHRRGEYSTEKLMEMIALHLDATHANCDTWKELACCFLRLFQCEEDCMSVCSNGEDSEKQKFTKWISQIPKIFSDYESSKSWRLRCRWWLTHYFSQTILTSDIASGDWELLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56825" e_stop="56476"/>
            <exon e_start="55418" e_stop="55243"/>
            <exon e_start="53874" e_stop="53789"/>
            <exon e_start="52786" e_stop="52722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.946"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.943"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="0.965"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="56825" e_stop="56476" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="56475" i_stop="55419" i_length="1057"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="55418" e_stop="55243" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="53874" e_stop="53789" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53788" i_stop="52787" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="52786" e_stop="52722" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56825" stop="56476"/>
              <exon start="55418" stop="55243"/>
              <exon start="53874" stop="53789"/>
              <exon start="52786" stop="52722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGACAGATTTGATAGCACGGTGCAGTCAGAGACCTTTGAGGACAGAATATTTATGTCCATTTTAAATTCAGAGGAGCATGATGCTGTTGAAGGCGAAGAGGCTAATTCTCCATTCAATTGTGATTCAAACACCTCTATTAGGAATGATAAAGAGATCTTGGGAGTTGATGTCAGTCAACAGAGAGAAGTTGCCATGGTTGATGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG : GTCTTCCATTGTGGTTATTGCCTTTACAATTGCCTTCCTCAGATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG : ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG : GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATG</gDNA_template>
            <first_frame> V  G  Q  I  *  *  H  G  A  V  R  D  L  *  G  Q  N  I  Y  V  H  F  K  F  R  G  A  *  C  C  *  R  R  R  G  *  F  S  I  Q  L  *  F  K  H  L  Y  *  E  *  *  R  D  L  G  S  *  C  Q  S  T  E  R  S  C  H  G  *  *  *  *  C  A  G  R  N  A  K  *  Q  F  S  A  T  R  L  L  H  E  F  F  *  K  K  *  P  *  R  F  F  Y  G  S  E  W  *  *  S  L  S  F  H  I  L  *  S  W :   S  S  I  V  V  I  A  F  T  I  A  F  L  R  *  K  F  R  G  C  S  Q  Y  A  S  G  P  A  *  *  Q  L  *  E  C  N  K  V  F  T  T  C  S  A  F  Q  S  T  S  T  R  G  F  S  S  F  N  T   : D  A  A  A  R  G  S  G  E  G  G  S  *  *  G  G  K  I  Y  S  I  H  Q  H  I  I  S  V  E  :  V  E  S  Y  Y  L  G  A  F  *  Q  R  *  L  C  Q  T  F  S  N  P   </first_frame>
            <second_frame>  L  D  R  F  D  S  T  V  Q  S  E  T  F  E  D  R  I  F  M  S  I  L  N  S  E  E  H  D  A  V  E  G  E  E  A  N  S  P  F  N  C  D  S  N  T  S  I  R  N  D  K  E  I  L  G  V  D  V  S  Q  Q  R  E  V  A  M  V  D  D  D  N  V  P  G  E  T  Q  N  D  N  F  Q  P  Q  D  F  Y  M  N  S  S  E  R  S  D  R  E  G  S  S  M  D  Q  S  G  D  D  P  Y  H  S  I  F  Y  N  R   : G  L  P  L  W  L  L  P  L  Q  L  P  S  S  D  E  N  L  E  D  V  L  N  M  H  R  A  L  R  N  D  N  Y  K  N  A  I  K  Y  L  R  H  A  L  H  S  S  P  P  V  L  E  A  F  H  P  L  I  Q  :  M  L  L  L  G  D  Q  V  K  E  A  L  D  E  V  E  K  F  T  P  Y  T  N  T  S  F  Q  L  R :   L  K  A  T  I  L  E  H  F  D  S  G  N  Y  V  K  L  S  A  I  H  </second_frame>
            <third_frame>   W  T  D  L  I  A  R  C  S  Q  R  P  L  R  T  E  Y  L  C  P  F  *  I  Q  R  S  M  M  L  L  K  A  K  R  L  I  L  H  S  I  V  I  Q  T  P  L  L  G  M  I  K  R  S  W  E  L  M  S  V  N  R  E  K  L  P  W  L  M  M  I  M  C  R  E  K  R  K  M  T  I  F  S  H  K  T  F  T  *  I  L  L  K  E  V  T  V  K  V  L  L  W  I  R  V  V  M  I  P  I  I  P  Y  S  I  I  V  :  V  F  H  C  G  Y  C  L  Y  N  C  L  P  Q  M  K  I  *  R  M  F  S  I  C  I  G  P  C  V  M  T  T  I  R  M  Q  *  S  I  Y  D  M  L  C  I  P  V  H  Q  Y  *  R  L  F  I  L  *  Y  R :   C  C  C  S  G  I  R  *  R  R  L  L  M  R  W  K  N  L  L  H  T  P  T  H  H  F  S  *   : G  *  K  L  L  S  W  S  I  L  T  A  V  T  M  S  N  F  Q  Q  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56824" stop="56476"/>
                    <exon start="55418" stop="55243"/>
                    <exon start="53874" stop="53789"/>
                    <exon start="52786" stop="52723"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDRFDSTVQSETFEDRIFMSILNSEEHDAVEGEEANSPFNCDSNTSIRNDKEILGVDVSQQREVAMVDDDNVPGETQNDNFQPQDFYMNSSERSDREGSSMDQSGDDPYHSIFYNRGLPLWLLPLQLPSSDENLEDVLNMHRALRNDNYKNAIKYLRHALHSSPPVLEAFHPLIQMLLLGDQVKEALDEVEKFTPYTNTSFQLRLKATILEHFDSGNYVKLSAIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="63652" PGL_stop="69106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63652" e_stop="63999"/>
            <exon e_start="65799" e_stop="66029"/>
            <exon e_start="66359" e_stop="66438"/>
            <exon e_start="66535" e_stop="66702"/>
            <exon e_start="66785" e_stop="66960"/>
            <exon e_start="67099" e_stop="67168"/>
            <exon e_start="67288" e_stop="67442"/>
            <exon e_start="67527" e_stop="67610"/>
            <exon e_start="68257" e_stop="68710"/>
            <exon e_start="69087" e_stop="69106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.772" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.331" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.700" e_score="0.991"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63652" e_stop="63999" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65799" e_stop="66029" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.772" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66359" e_stop="66438" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66535" e_stop="66702" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66785" e_stop="66960" e_length="176"/>
          </exon>
          <intron i_serial="5" don_prob="0.334" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66961" i_stop="67098" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67099" e_stop="67168" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67169" i_stop="67287" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67288" e_stop="67442" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.331" acc_prob="0.965">
            <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67527" e_stop="67610" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="68257" e_stop="68710" e_length="454"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.700">
            <gDNA_intron_boundary i_start="68711" i_stop="69086" i_length="376"/>
          </intron>
          <exon e_serial="10" e_score="0.650">
            <gDNA_exon_boundary e_start="69087" e_stop="69106" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63652" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63789" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63805" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66702"/>
              <exon start="66785" stop="66893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63808" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66702"/>
              <exon start="66785" stop="66960"/>
              <exon start="67099" stop="67168"/>
              <exon start="67288" stop="67442"/>
              <exon start="67527" stop="67610"/>
              <exon start="68257" stop="68709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66702"/>
              <exon start="66785" stop="66833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63950" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67313" stop="67442"/>
              <exon start="67527" stop="67610"/>
              <exon start="68257" stop="68546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68273" stop="68710"/>
              <exon start="69087" stop="69106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG : TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT : GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA : GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG : GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAG : TATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAG : TTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG : GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG : GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTT : CACAAAATAAAAATACCACA</gDNA_template>
            <first_frame> N  K  *  G  H  V  K  V  P  Q  T  N  T  P  L  S  R  I  I  L  P  R  Q  H  C  F  G  F  F  F  S  T  L  S  F  L  D  I  K  M  F  I  K  *  Q  R  C  Q  R  N  G  V  Q  Q  Q  N  F  Q  F  S  F  *  F  G  V  P  N  R  I  W  E  S  F  F  I  *  S  Y  S  W  S  S  T  S  R  S  K  *  S  S  Y  L  P  L  W  T  L  C  *  A  D  L  W  H  L  F  Y  F  P  S  Q  T  *  S  T  Q  :  L  A  I  S  Y  *  A  I  G  Y  T  *  T  V  *  T  K  N  A  E  T  *  K  A  C  E  *  I  Q  P  V  K  Q  F  C  Y  T  N  S  T  K  V  E  A  C  *  D  T  R  N  T  D  *  F  H  *  W  F  V  Y  Y  M  R  G  W  Q  L  I  S  P  T  W  F  C  N  S  H  :  V  Y  C  Q  Q  I  N  G  E  L  C  L  L  Q  C  *  W  R  L  S  D  C  S  S  K  R  K :   A  V  D  Y  Y  *  M  R  K  I  A  G  L  S  W  *  N  C  D  F  A  S  R  I  *  V  C  C  *  P  S  G  W  T  F  T  W  L  C  R  *  N  F  W  N  S  S  S  T  S  *  S  G  A  N  R :   R  K  W  S  S  C  S  K  G  F  S  C  S  C  C  L  V  R  R  W  L  P  S  R  L  H  Y  C  A  E  V  W  W  *  T  L  H  C  E  A  G  L  L  S  F  *  C  G  R  L  A  W  Q  L  C  S  L  *   : V  *  F  K  Q  V  L  P  L  Q  Y  C  I  D  G  P  Q  *  S  F  N  *  H  S :   F  D  S  T  N  R  *  T  W  C  G  V  A  *  L  C  H  F  P  S  P  V  V  G  C  *  T  H  L  P  S  S  I  L  S  S  Q  L  Y  E  R  I  Y  G  S  N  L  W  R  I  R   : G  K  S  *  W  F  S  P  W  R  G  K  P  S  Q  L  H  D  S  S  W  S  *  Y  Q  N  I  *   : G  N  H  C  T  W  K  *  S  W  S  T  *  N  S  *  Y  H  G  F  H  V  *  V  L  P  S  T  P  S  L  S  V  G  S  *  I  S  V  Y  G  S  R  L  L  P  M  L  D  W  L  E  V  S  L  L  R  T  I  Y  E  R  R  Q  R  R  F  A  E  R  K  T  H  R  K  V  K  C  S  L  F  S  *  L  L  *  F  L  L  K  *  L  K  L  V  H  K  E  S  Q  A  C  K  T  *  N  K  P  Y  V  S  I  R  L  K  V  *  G  G  D  P  S  A  D  I  V  V  R  *  N  Q  C  S  M  K  L  R  R  K  *  K  C  V  T  V  M  M  L  H  V  D  F :   T  K  *  K  Y  H  </first_frame>
            <second_frame>  T  N  K  D  M  *  K  F  L  K  Q  T  R  L  C  Q  G  S  S  C  H  D  S  T  V  S  V  S  S  S  Q  L  F  L  F  *  T  *  K  C  S  *  N  S  R  G  V  K  E  M  E  C  S  S  R  T  S  N  F  P  S  D  L  E  Y  Q  T  G  F  G  N  H  F  S  S  E  A  I  V  G  A  L  P  Q  G  Q  N  S  P  L  I  C  P  F  G  L  Y  A  E  Q  I  S  G  T  S  F  T  S  P  R  K  L  N  Q  R  S :   W  L  Y  R  I  K  P  S  V  T  H  E  P  F  R  P  R  M  P  R  H  E  K  L  V  S  E  F  N  Q  S  N  S  S  A  T  P  T  Q  L  R  W  K  P  V  E  I  P  E  T  P  T  D  F  I  D  G  L  Y  T  I  C  G  A  G  S  S  Y  L  R  H  G  F  A  I  H  M :   Y  T  A  N  K  S  M  E  N  S  A  F  C  N  A  D  G  D  F  L  I  V  P  Q  K  G   : R  L  W  I  T  T  E  C  G  R  L  Q  V  C  P  G  E  I  V  I  L  P  Q  G  Y  R  F  A  V  D  L  P  D  G  P  S  R  G  Y  V  A  E  T  F  G  T  H  L  Q  L  P  D  L  G  P  I   : G  A  N  G  L  A  A  P  R  D  F  L  V  P  V  A  W  Y  G  D  G  S  R  P  G  Y  T  I  V  Q  K  Y  G  G  E  L  F  T  A  K  Q  D  F  S  P  F  N  V  V  A  W  H  G  N  Y  V  P  Y  K  :  Y  D  L  S  K  F  C  P  Y  N  T  V  L  M  D  H  S  D  P  S  I  N  T   : V  L  T  A  P  T  D  K  P  G  V  A  L  L  D  F  V  I  F  P  P  R  W  L  V  A  E  H  T  F  R  P  P  Y  Y  H  R  N  C  M  S  E  F  M  G  L  I  Y  G  G  Y  E  :  A  K  A  D  G  F  H  P  G  G  A  S  L  H  S  C  M  T  P  H  G  P  D  T  K  T  F  E  :  A  T  I  A  L  G  N  E  A  G  P  H  R  I  A  D  T  M  A  F  M  F  E  S  C  L  V  P  R  V  C  P  W  A  L  E  S  P  F  M  D  H  D  Y  Y  Q  C  W  I  G  L  K  S  H  F  S  G  L  S  M  N  E  D  N  V  D  L  Q  K  G  K  P  I  E  R  *  N  A  H  C  S  A  S  S  C  S  S  S  *  S  D  L  N  L  Y  I  R  S  H  R  H  V  K  H  E  I  N  P  M  L  V  S  D  *  K  F  R  V  A  I  Q  A  R  I  *  W  *  D  E  T  N  V  L  *  N  C  D  A  S  K  N  V  L  P  *  *  C  C  M  *  T   : S  Q  N  K  N  T  T </second_frame>
            <third_frame>   Q  I  R  T  C  E  S  S  S  N  K  H  A  S  V  K  D  H  P  A  T  T  A  L  F  R  F  L  L  L  N  S  F  F  F  R  H  K  N  V  H  K  I  A  E  V  S  K  K  W  S  A  A  A  E  L  P  I  F  L  L  I  W  S  T  K  Q  D  L  G  I  I  F  H  L  K  L  *  L  E  L  Y  L  K  V  K  I  V  L  L  F  A  P  L  D  F  M  L  S  R  S  L  A  P  L  L  L  P  L  A  N  L  I  N  A   : V  G  Y  I  V  L  S  H  R  L  H  M  N  R  L  D  Q  E  C  R  D  M  K  S  L  *  V  N  S  T  S  Q  T  V  L  L  H  Q  L  N  *  G  G  S  L  L  R  Y  Q  K  H  R  L  I  S  L  M  V  C  I  L  Y  A  G  L  A  A  H  I  S  D  M  V  L  Q  F  T   : C  I  L  P  T  N  Q  W  R  T  L  P  S  A  M  L  M  A  T  F  *  L  F  L  K  K  E  :  G  C  G  L  L  L  N  A  E  D  C  R  F  V  L  V  K  L  *  F  C  L  K  D  I  G  L  L  L  T  F  R  M  D  L  H  V  V  M  S  L  K  L  L  E  L  I  F  N  F  L  I  W  G  Q  *  :  A  Q  M  V  *  L  L  Q  G  I  F  L  F  L  L  P  G  T  E  M  A  P  V  Q  V  T  L  L  C  R  S  M  V  V  N  S  S  L  R  S  R  T  S  L  L  L  M  W  S  L  G  M  A  I  M  F  L  I  S :   M  I  *  A  S  S  A  L  T  I  L  Y  *  W  T  T  V  I  L  Q  L  T  Q  :  F  *  Q  H  Q  Q  I  N  L  V  W  R  C  L  T  L  S  F  S  L  P  G  G  W  L  L  N  T  P  S  V  L  H  I  I  I  A  I  V  *  A  N  L  W  V  *  S  M  A  D  T  R :   Q  K  L  M  V  F  T  L  A  G  Q  A  F  T  A  A  *  L  L  M  V  L  I  P  K  H  L  R :   Q  P  L  H  L  E  M  K  L  V  H  I  E  *  L  I  P  W  L  S  C  L  S  L  A  *  Y  P  E  S  V  R  G  L  L  N  L  R  L  W  I  T  I  I  T  N  A  G  L  A  *  S  L  T  S  Q  D  Y  L  *  T  K  T  T  S  I  C  R  K  E  N  P  *  K  G  E  M  L  I  V  Q  L  A  P  V  V  P  P  K  V  T  *  T  C  T  *  G  V  T  G  M  *  N  M  K  *  T  L  C  *  Y  Q  I  E  S  L  G  W  R  S  K  R  G  Y  S  G  K  M  K  P  M  F  Y  E  I  A  T  Q  V  K  M  C  Y  R  D  D  V  A  C  R  L  :  H  K  I  K  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63779" stop="63999"/>
                    <exon start="65799" stop="66029"/>
                    <exon start="66359" stop="66438"/>
                    <exon start="66535" stop="66702"/>
                    <exon start="66785" stop="66960"/>
                    <exon start="67099" stop="67168"/>
                    <exon start="67288" stop="67442"/>
                    <exon start="67527" stop="67610"/>
                    <exon start="68257" stop="68484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1410</number_coding_nucleotides>
                  <number_encoded_amino_acids>470</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRGVKEMECSSRTSNFPSDLEYQTGFGNHFSSEAIVGALPQGQNSPLICPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSVTHEPFRPRMPRHEKLVSEFNQSNSSATPTQLRWKPVEIPETPTDFIDGLYTICGAGSSYLRHGFAIHMYTANKSMENSAFCNADGDFLIVPQKGRLWITTECGRLQVCPGEIVILPQGYRFAVDLPDGPSRGYVAETFGTHLQLPDLGPIGANGLAAPRDFLVPVAWYGDGSRPGYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLMDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFHPGGASLHSCMTPHGPDTKTFEATIALGNEAGPHRIADTMAFMFESCLVPRVCPWALESPFMDHDYYQCWIGLKSHFSGLSMNEDNVDLQKGKPIER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63815" e_stop="63999"/>
            <exon e_start="66359" e_stop="66438"/>
            <exon e_start="66535" e_stop="67108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63815" e_stop="63999" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66359" e_stop="66438" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="66535" e_stop="67108" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63904" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="67077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63975" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="67108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374587" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG : GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA : GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAA</gDNA_template>
            <first_frame> R  T  S  N  F  P  S  D  L  E  Y  Q  T  G  F  G  N  H  F  S  S  E  A  I  V  G  A  L  P  Q  G  Q  N  S  P  L  I  C  P  F  G  L  Y  A  E  Q  I  S  G  T  S  F  T  S  P  R  K  L  N  Q  R  R :   Y  T  A  N  K  S  M  E  N  S  A  F  C  N  A  D  G  D  F  L  I  V  P  Q  K  G   : R  L  W  I  T  T  E  C  G  R  L  Q  V  C  P  G  E  I  V  I  L  P  Q  G  Y  R  F  A  V  D  L  P  D  G  P  S  R  G  Y  V  A  E  T  F  G  T  H  L  Q  L  P  D  L  G  P  I  G  A  L  E  S  A  I  L  F  A  V  *  T  A  D  V  I  Y  *  *  Y  G  F  A  H  V  F  R  R  K  W  S  S  C  S  K  G  F  S  C  S  C  C  L  V  R  R  W  L  P  S  R  L  H  Y  C  A  E  V  W  W  *  T  L  H  C  E  A  G  L  L  S  F  *  C  G  R  L  A  W  Q  L  C  S  L  *  G  G  Y  F  S  I  F  Q  S  L  I  I  *  V  P  L  C  T  F  Y  H  N  L  L  C  Y  M  E  T  *  C  C  L  P  P  *  S  *  R  N  I  F  P  Q  F  A  V  *  F   </first_frame>
            <second_frame>  E  L  P  I  F  L  L  I  W  S  T  K  Q  D  L  G  I  I  F  H  L  K  L  *  L  E  L  Y  L  K  V  K  I  V  L  L  F  A  P  L  D  F  M  L  S  R  S  L  A  P  L  L  L  P  L  A  N  L  I  N  A   : G  I  L  P  T  N  Q  W  R  T  L  P  S  A  M  L  M  A  T  F  *  L  F  L  K  K  E  :  G  C  G  L  L  L  N  A  E  D  C  R  F  V  L  V  K  L  *  F  C  L  K  D  I  G  L  L  L  T  F  R  M  D  L  H  V  V  M  S  L  K  L  L  E  L  I  F  N  F  L  I  W  G  Q  *  V  L  *  K  V  Q  S  Y  L  L  F  K  Q  L  M  L  F  T  D  D  M  D  L  H  M  Y  L  G  A  N  G  L  A  A  P  R  D  F  L  V  P  V  A  W  Y  G  D  G  S  R  P  G  Y  T  I  V  Q  K  Y  G  G  E  L  F  T  A  K  Q  D  F  S  P  F  N  V  V  A  W  H  G  N  Y  V  P  Y  K  A  G  I  S  L  Y  F  N  L  S  *  Y  E  C  P  C  A  L  F  I  T  I  Y  F  A  T  W  K  L  D  A  V  C  L  L  S  P  D  V  I  Y  F  L  N  L  Q  Y  D  L  </second_frame>
            <third_frame>   N  F  Q  F  S  F  *  F  G  V  P  N  R  I  W  E  S  F  F  I  *  S  Y  S  W  S  S  T  S  R  S  K  *  S  S  Y  L  P  L  W  T  L  C  *  A  D  L  W  H  L  F  Y  F  P  S  Q  T  *  S  T  Q  :  V  Y  C  Q  Q  I  N  G  E  L  C  L  L  Q  C  *  W  R  L  S  D  C  S  S  K  R  K :   A  V  D  Y  Y  *  M  R  K  I  A  G  L  S  W  *  N  C  D  F  A  S  R  I  *  V  C  C  *  P  S  G  W  T  F  T  W  L  C  R  *  N  F  W  N  S  S  S  T  S  *  S  G  A  N  R  C  F  R  K  C  N  P  I  C  C  L  N  S  *  C  Y  L  L  M  I  W  I  C  T  C  I  *  A  Q  M  V  *  L  L  Q  G  I  F  L  F  L  L  P  G  T  E  M  A  P  V  Q  V  T  L  L  C  R  S  M  V  V  N  S  S  L  R  S  R  T  S  L  L  L  M  W  S  L  G  M  A  I  M  F  L  I  R  R  V  F  L  Y  I  S  I  S  H  N  M  S  A  L  V  H  F  L  S  Q  F  T  L  L  H  G  N  L  M  L  F  A  S  L  V  L  T  *  Y  I  S  S  I  C  S  M  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63815" stop="63999"/>
                    <exon start="66359" stop="66438"/>
                    <exon start="66535" stop="66737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSNFPSDLEYQTGFGNHFSSEAIVGALPQGQNSPLICPFGLYAEQISGTSFTSPRKLNQRRYTANKSMENSAFCNADGDFLIVPQKGRLWITTECGRLQVCPGEIVILPQGYRFAVDLPDGPSRGYVAETFGTHLQLPDLGPIGALESAILFAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66712" stop="66993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVQSYLLFKQLMLFTDDMDLHMYLGANGLAAPRDFLVPVAWYGDGSRPGYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPYKAGISLYFNLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="67313" e_stop="67442"/>
            <exon e_start="67527" e_stop="67610"/>
            <exon e_start="68257" e_stop="68577"/>
            <exon e_start="68646" e_stop="68800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.331" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67313" e_stop="67442" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.331" acc_prob="0.965">
            <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67527" e_stop="67610" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="68257" e_stop="68577" e_length="321"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68578" i_stop="68645" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="0.871">
            <gDNA_exon_boundary e_start="68646" e_stop="68800" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67313" stop="67442"/>
              <exon start="67527" stop="67610"/>
              <exon start="68257" stop="68546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67561" stop="67610"/>
              <exon start="68257" stop="68577"/>
              <exon start="68646" stop="68800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG : GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG : GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAAC : CAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATTTTGTATATATATAAAGATGGAACTATCATATAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGA</gDNA_template>
            <first_frame> W  C  G  V  A  *  L  C  H  F  P  S  P  V  V  G  C  *  T  H  L  P  S  S  I  L  S  S  Q  L  Y  E  R  I  Y  G  S  N  L  W  R  I  R   : G  K  S  *  W  F  S  P  W  R  G  K  P  S  Q  L  H  D  S  S  W  S  *  Y  Q  N  I  *   : G  N  H  C  T  W  K  *  S  W  S  T  *  N  S  *  Y  H  G  F  H  V  *  V  L  P  S  T  P  S  L  S  V  G  S  *  I  S  V  Y  G  S  R  L  L  P  M  L  D  W  L  E  V  S  L  L  R  T  I  Y  E  R  R  Q  R  R  F  A  E  R  K  T  H  R  K  V  K  C  S  L  F  S  *  L  L  *  F  L  L  K  *  L  K  L  V  H  K  E  S  Q  A  C  K  T  *  N  K   : P  M  F  Y  E  I  A  T  Q  V  K  M  C  Y  R  D  D  V  A  C  R  L  V  V  Y  G  A  F  C  I  Y  I  K  M  E  L  S  Y  K  Y  L  L  Q  L  Q  E  Q  *  I  K  *  * </first_frame>
            <second_frame>  G  V  A  L  L  D  F  V  I  F  P  P  R  W  L  V  A  E  H  T  F  R  P  P  Y  Y  H  R  N  C  M  S  E  F  M  G  L  I  Y  G  G  Y  E  :  A  K  A  D  G  F  H  P  G  G  A  S  L  H  S  C  M  T  P  H  G  P  D  T  K  T  F  E  :  A  T  I  A  L  G  N  E  A  G  P  H  R  I  A  D  T  M  A  F  M  F  E  S  C  L  V  P  R  V  C  P  W  A  L  E  S  P  F  M  D  H  D  Y  Y  Q  C  W  I  G  L  K  S  H  F  S  G  L  S  M  N  E  D  N  V  D  L  Q  K  G  K  P  I  E  R  *  N  A  H  C  S  A  S  S  C  S  S  S  *  S  D  L  N  L  Y  I  R  S  H  R  H  V  K  H  E  I  N  :  Q  C  S  M  K  L  R  R  K  *  K  C  V  T  V  M  M  L  H  V  D  L  *  F  M  V  H  F  V  Y  I  *  R  W  N  Y  H  I  N  T  C  C  N  Y  K  S  N  E  L  S  N   </second_frame>
            <third_frame>   V  W  R  C  L  T  L  S  F  S  L  P  G  G  W  L  L  N  T  P  S  V  L  H  I  I  I  A  I  V  *  A  N  L  W  V  *  S  M  A  D  T  R :   Q  K  L  M  V  F  T  L  A  G  Q  A  F  T  A  A  *  L  L  M  V  L  I  P  K  H  L  R :   Q  P  L  H  L  E  M  K  L  V  H  I  E  *  L  I  P  W  L  S  C  L  S  L  A  *  Y  P  E  S  V  R  G  L  L  N  L  R  L  W  I  T  I  I  T  N  A  G  L  A  *  S  L  T  S  Q  D  Y  L  *  T  K  T  T  S  I  C  R  K  E  N  P  *  K  G  E  M  L  I  V  Q  L  A  P  V  V  P  P  K  V  T  *  T  C  T  *  G  V  T  G  M  *  N  M  K  *  T :   N  V  L  *  N  C  D  A  S  K  N  V  L  P  *  *  C  C  M  *  T  C  S  L  W  C  I  L  Y  I  Y  K  D  G  T  I  I  *  I  L  V  A  I  T  R  A  M  N  *  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67314" stop="67442"/>
                    <exon start="67527" stop="67610"/>
                    <exon start="68257" stop="68484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFHPGGASLHSCMTPHGPDTKTFEATIALGNEAGPHRIADTMAFMFESCLVPRVCPWALESPFMDHDYYQCWIGLKSHFSGLSMNEDNVDLQKGKPIER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="73399" PGL_stop="77336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73399" e_stop="73416"/>
            <exon e_start="74320" e_stop="74465"/>
            <exon e_start="74543" e_stop="74819"/>
            <exon e_start="74896" e_stop="75198"/>
            <exon e_start="75525" e_stop="75896"/>
            <exon e_start="76412" e_stop="76428"/>
            <exon e_start="77183" e_stop="77223"/>
            <exon e_start="77306" e_stop="77336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.561" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.446" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.855" e_score="0.588"/>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="0.488"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73399" e_stop="73416" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.561" acc_prob="0.941">
            <gDNA_intron_boundary i_start="73417" i_stop="74319" i_length="903"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74320" e_stop="74465" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.446">
            <gDNA_intron_boundary i_start="74466" i_stop="74542" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74543" e_stop="74819" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74896" e_stop="75198" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75525" e_stop="75896" e_length="372"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75897" i_stop="76411" i_length="515"/>
          </intron>
          <exon e_serial="6" e_score="0.588">
            <gDNA_exon_boundary e_start="76412" e_stop="76428" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.632" acc_prob="0.855">
            <gDNA_intron_boundary i_start="76429" i_stop="77182" i_length="754"/>
          </intron>
          <exon e_serial="7" e_score="0.488">
            <gDNA_exon_boundary e_start="77183" e_stop="77223" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77224" i_stop="77305" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.581">
            <gDNA_exon_boundary e_start="77306" e_stop="77336" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73399" stop="73416"/>
              <exon start="74320" stop="74465"/>
              <exon start="74543" stop="74819"/>
              <exon start="74896" stop="75198"/>
              <exon start="75525" stop="75546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74556" stop="74819"/>
              <exon start="74896" stop="75198"/>
              <exon start="75525" stop="75616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74727" stop="74819"/>
              <exon start="74896" stop="75198"/>
              <exon start="75525" stop="75861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74727" stop="74819"/>
              <exon start="74896" stop="75198"/>
              <exon start="75525" stop="75612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74921" stop="75198"/>
              <exon start="75525" stop="75885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425993" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75025" stop="75198"/>
              <exon start="75525" stop="75861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75537" stop="75896"/>
              <exon start="76412" stop="76428"/>
              <exon start="77183" stop="77223"/>
              <exon start="77306" stop="77336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGATTCAGCTTGACGG : GTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAA : GCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG : CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAG : TTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACA : AGACAGAGACACAACAA : ATGAATGCTGATATGGAGAAGCGGCTGTAGGAGGAGCCAAC : GAGCTTCTCTGGAGAAAAGAGTAAAAAAAAA</gDNA_template>
            <first_frame> T  D  S  A  *  R  :  V  F  Q  P  W  I  Q  S  R  R  L  A  Y  V  K  H  K  H  V  I  S  G  V  L  R  Q  L  R  M  R  A  L  G  R  L  C  T  D  Q  G  A  P  N  I  E  V  L  E  K :   L  F  N  A  I  D  E  N  E  D  G  H  L  S  R  T  E  L  K  A  L  V  V  G  I  R  L  E  E  I  N  L  H  E  N  D  A  V  E  K  L  M  K  D  F  D  T  S  H  D  H  Q  V  E  M  S  E  F  I  A  G  V  T  K  W  L  T  E  A  R  G  S  E  A  P  S  P  E  A  G  P  D  T  M  K  Y  L  D  D  L  H  E  :  Q  T  R  R  E  H  H  F  L  G  D  Q  S  D  E  S  V  E  T  V  E  N  P  R  S  T  A  I  K  A  V  L  L  L  L  L  G  T  V  I  A  A  V  F  A  D  P  L  V  D  A  V  N  N  F  S  S  A  T  S  I  P  S  F  F  I  S  F  I  A  L  P  L  A  T  N  S  S  E  A  V  S  A  I  I  F  A  S  R  K  K  L  R  S  A  S  L  T  F  S  E  :  L  Y  G  A  V  T  M  N  N  L  L  C  L  S  V  F  L  A  L  V  Y  I  R  G  L  T  W  D  F  S  S  E  V  L  V  I  L  I  V  C  V  V  V  G  V  F  A  S  V  R  S  T  F  P  L  W  T  S  L  L  A  F  L  L  Y  P  F  S  L  V  L  V  Y  V  L  D  Y  K  F  G  W  S  *  S  W  T  T  L  F  V  E  L  V  C  I  F  *  A  T  A  H  F  S  R  S  W  I  F  *  *  N  F  S  N  L  K  T  E  V  I  C  L  L  T  :  R  Q  R  H  N  K :   *  M  L  I  W  R  S  G  C  R  R  S  Q   : R  A  S  L  E  K  R  V  K  K   </first_frame>
            <second_frame>  R  I  Q  L  D  G :   S  F  S  L  G  Y  R  V  D  V  L  L  M  *  N  I  N  M  L  Y  Q  E  F  *  D  S  *  E  C  V  H  W  G  G  F  A  Q  T  R  E  H  Q  I  *  K  F  *  K   : S  Y  S  T  Q  L  M  K  M  R  M  G  I  F  P  V  L  N  *  K  L  W  *  *  E  S  V  W  R  R  *  T  Y  M  R  M  M  L  *  K  N  *  *  R  T  S  I  L  H  M  I  I  K  L  K  C  P  S  S  L  L  E  L  Q  N  G  L  L  R  P  G  V  P  R  L  L  L  L  K  L  V  L  I  Q  *  S  T  S  M  T  C  M  S :   K  Q  G  E  N  T  I  S  *  G  I  K  V  T  K  V  L  R  L  L  R  I  L  D  Q  L  Q  L  R  L  F  Y  C  F  C  W  V  L  S  L  L  P  S  L  L  I  L  W  L  M  L  S  I  I  S  L  V  P  Q  A  F  L  L  S  S  S  H  S  L  L  C  H  W  R  P  T  P  V  R  R  C  Q  L  L  S  L  L  A  G  K  S  *  D  L  H  H  *  H  F  L  S :   C  M  E  Q  *  Q  *  T  I  S  F  V  Y  Q  S  S  W  L  S  S  I  S  E  D  *  H  G  T  S  R  L  K  S  W  L  F  *  L  S  V  L  S  W  G  S  L  Q  A  S  E  A  P  F  L  F  G  L  P  C  *  L  F  Y  F  T  P  S  L  S  Y  L  Y  M  F  L  T  T  N  L  V  G  L  S  L  G  R  L  F  L  L  N  L  Y  A  S  F  E  L  R  H  T  L  V  A  L  G  F  S  S  R  T  S  V  T  *  K  L  K  S  F  V  Y  L  Q :   D  R  D  T  T   : N  E  C  *  Y  G  E  A  A  V  G  G  A  N  :  E  L  L  W  R  K  E  *  K  K  </second_frame>
            <third_frame>   G  F  S  L  T   : G  L  S  A  L  D  T  E  *  T  S  C  L  C  K  T  *  T  C  Y  I  R  S  F  E  T  V  K  N  A  C  I  G  E  A  L  H  R  P  G  S  T  K  Y  R  S  F  R  K  :  A  I  Q  R  N  *  *  K  *  G  W  A  S  F  P  Y  *  I  K  S  S  G  S  R  N  P  F  G  G  D  K  L  T  *  E  *  C  C  R  K  T  D  E  G  L  R  Y  F  T  *  S  S  S  *  N  V  R  V  H  C  W  S  Y  K  M  A  Y  *  G  Q  G  F  R  G  S  F  S  *  S  W  S  *  Y  N  E  V  P  R  *  L  A  *   : A  N  K  E  R  T  P  F  L  R  G  S  K  *  R  K  C  *  D  C  *  E  S  *  I  N  C  N  *  G  C  S  T  A  F  A  G  Y  C  H  C  C  R  L  C  *  S  S  G  *  C  C  Q  *  F  L  *  C  H  K  H  S  F  F  L  H  L  I  H  C  S  A  T  G  D  Q  L  Q  *  G  G  V  S  Y  Y  L  C  *  P  E  K  V  E  I  C  I  I  N  I  F  *   : V  V  W  S  S  D  N  E  Q  S  P  L  S  I  S  L  P  G  S  R  L  Y  Q  R  I  D  M  G  L  L  V  *  S  L  G  Y  S  N  C  L  C  C  R  G  G  L  C  K  R  P  K  H  L  S  S  L  D  F  L  A  S  F  S  T  L  P  L  L  S  R  T  C  I  C  S  *  L  Q  I  W  L  V  L  V  L  D  D  S  F  C  *  T  C  M  H  L  L  S  Y  G  T  L  *  S  L  L  D  F  L  V  E  L  Q  *  L  E  N  *  S  H  L  F  T  Y   : K  T  E  T  Q  Q  :  M  N  A  D  M  E  K  R  L  *  E  E  P  T :   S  F  S  G  E  K  S  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73414" stop="73416"/>
                    <exon start="74320" stop="74465"/>
                    <exon start="74543" stop="74819"/>
                    <exon start="74896" stop="75198"/>
                    <exon start="75525" stop="75773"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVFQPWIQSRRLAYVKHKHVISGVLRQLRMRALGRLCTDQGAPNIEVLEKLFNAIDENEDGHLSRTELKALVVGIRLEEINLHENDAVEKLMKDFDTSHDHQVEMSEFIAGVTKWLTEARGSEAPSPEAGPDTMKYLDDLHEQTRREHHFLGDQSDESVETVENPRSTAIKAVLLLLLGTVIAAVFADPLVDAVNNFSSATSIPSFFISFIALPLATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNLLCLSVFLALVYIRGLTWDFSSEVLVILIVCVVVGVFASVRSTFPLWTSLLAFLLYPFSLVLVYVLDYKFGWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="75959" PGL_stop="75555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75959" e_stop="75555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="75959" e_stop="75555" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75959" stop="75555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75959" stop="75567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATTGACTAGAGACTAGAGAGAACACTCAAAACCTGTAACCAATAAACAGCAGTGGGAAATTGTAAGTAAACAAATGACTTCAGTTTTCAAGTTACTGAAGTTCTACTAGAAAATCCAAGAGCGACTAAAGTGTGCCGTAGCTCAAAAGATGCATACAAGTTCAACAAAAAGAGTCGTCCAAGACTAAGACCAACCAAATTTGTAGTCAAGAACATATACAAGTACGAGAGAGAAGGGGTAAAGTAGAAAAGCTAGCAAGGAAGTCCAAAGAGGAAAGGTGCTTCGGACGCTTGCAAAGACCCCCACGACAACACAGACAATTAGAATAACCAAGACTTCAGACGAGAAGTCCCATGTCAATCCTCTGATATAGACGAGAGCCAGGAAGACTGATAGACAAAG</gDNA_template>
            <first_frame> M  I  D  *  R  L  E  R  T  L  K  T  C  N  Q  *  T  A  V  G  N  C  K  *  T  N  D  F  S  F  Q  V  T  E  V  L  L  E  N  P  R  A  T  K  V  C  R  S  S  K  D  A  Y  K  F  N  K  K  S  R  P  R  L  R  P  T  K  F  V  V  K  N  I  Y  K  Y  E  R  E  G  V  K  *  K  S  *  Q  G  S  P  K  R  K  G  A  S  D  A  C  K  D  P  H  D  N  T  D  N  *  N  N  Q  D  F  R  R  E  V  P  C  Q  S  S  D  I  D  E  S  Q  E  D  *  *  T  K </first_frame>
            <second_frame>  *  L  T  R  D  *  R  E  H  S  K  P  V  T  N  K  Q  Q  W  E  I  V  S  K  Q  M  T  S  V  F  K  L  L  K  F  Y  *  K  I  Q  E  R  L  K  C  A  V  A  Q  K  M  H  T  S  S  T  K  R  V  V  Q  D  *  D  Q  P  N  L  *  S  R  T  Y  T  S  T  R  E  K  G  *  S  R  K  A  S  K  E  V  Q  R  G  K  V  L  R  T  L  A  K  T  P  T  T  T  Q  T  I  R  I  T  K  T  S  D  E  K  S  H  V  N  P  L  I  *  T  R  A  R  K  T  D  R  Q   </second_frame>
            <third_frame>   D  *  L  E  T  R  E  N  T  Q  N  L  *  P  I  N  S  S  G  K  L  *  V  N  K  *  L  Q  F  S  S  Y  *  S  S  T  R  K  S  K  S  D  *  S  V  P  *  L  K  R  C  I  Q  V  Q  Q  K  E  S  S  K  T  K  T  N  Q  I  C  S  Q  E  H  I  Q  V  R  E  R  R  G  K  V  E  K  L  A  R  K  S  K  E  E  R  C  F  G  R  L  Q  R  P  P  R  Q  H  R  Q  L  E  *  P  R  L  Q  T  R  S  P  M  S  I  L  *  Y  R  R  E  P  G  R  L  I  D  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="79278" PGL_stop="76814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79278" e_stop="78697"/>
            <exon e_start="78578" e_stop="78462"/>
            <exon e_start="77563" e_stop="77394"/>
            <exon e_start="77313" e_stop="77127"/>
            <exon e_start="77029" e_stop="76814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.846" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="79278" e_stop="78697" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78578" e_stop="78462" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.846" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77563" e_stop="77394" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.885" acc_prob="0.668">
            <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77313" e_stop="77127" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="77029" e_stop="76814" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79278" stop="78749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78998" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78855" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="77004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78855" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78772" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78559" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77553" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTACGAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAAAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTAGAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG : ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG : ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG : AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG : GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGCAATTGCCATGTTGAAGTAGGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGTGCTTCTTCCGGGAGAATTTCT</gDNA_template>
            <first_frame> A  T  S  R  G  S  K  K  V  K  Q  K  K  I  P  Q  R  G  L  G  V  A  Q  L  E  R  I  R  M  E  G  E  K  K  H  E  K  D  A  N  F  Q  T  P  N  V  L  V  P  N  S  V  H  S  T  K  T  M  S  K  C  L  A  V  E  G  S  S  F  R  P  S  S  I  T  L  P  P  P  S  T  M  D  L  L  S  K  N  S  V  F  R  P  D  L  S  A  L  V  L  D  G  F  R  P  K  T  L  Q  S  S  K  P  M  N  M  G  G  G  E  L  S  W  S  S  V  S  G  P  G  S  D  K  C  P  K  L  W  S  C  E  Y  S  P  E  R  E  S  K  Q  G  N  R  H  G  V  V  F  G  A  N  V  D  L  P  N  E  L  H  N  P  I  L  P  L  P  S  V  L  Q  R  S  Q  Q  Y  Q  Q  P  S  C  S  S  S  M  :  M  N  I  S  S  G  I  S  S  S  S  V  L  N  Y  Q  M  E  P  P  S  N  Q  N  Y  Y  S  C  N  Y  L  P  L  W  P  E  D  V  K  :  M  V  G  M  K  R  P  Y  P  F  T  P  E  F  P  P  V  P  T  F  H  C  K  F  P  P  A  Y  V  N  L  A  S  R  S  P  E  S  A  S  C  S  N  E  C  A  A  S  L  E  S  G  N  L  L  K  R :   E  A  P  S  G  S  R  T  L  S  E  S  K  P  R  D  V  I  R  Q  N  K  A  L  N  G  D  F  L  T  L  A  P  P  T  A  A  S  P  Y  Q  H  S  S  N  S  N  L  Q  S  L  E  R  F  R  L  E  S  V  T  C  Q  :  G  V  A  E  E  P  T  T  T  S  S  A  L  S  K  S  V  Q  Q  S  I  Y  G  F  F  P  T  A  K  V  Q  I  S  Q  E  G  T  N  K  R  N  C  H  V  E  V  G  G  N  I  D  L  N  L  K  L  *  K  L  V  I  T  H  G  C  A  S  S  G  R  I  S </first_frame>
            <second_frame>  L  R  V  E  D  R  K  K  *  S  R  K  K  Y  H  K  E  D  L  V  L  L  N  L  K  G  L  E  W  K  G  R  K  N  M  K  K  M  Q  T  F  K  H  L  M  F  W  Y  Q  I  Q  F  I  L  P  K  L  C  Q  N  A  *  L  L  K  V  L  V  L  G  L  V  Q  S  L  Y  H  H  H  Q  Q  W  I  C  F  R  K  I  V  S  L  D  Q  I  C  L  P  *  F  L  M  V  S  V  P  R  L  Y  N  H  Q  N  Q  *  T  W  V  E  G  S  *  V  G  R  L  F  R  V  Q  G  V  I  N  V  L  N  C  G  V  V  S  T  V  L  K  E  K  A  N  R  E  I  V  M  V  L  F  S  G  L  M  *  I  C  Q  M  N  C  I  T  P  F  Y  L  Y  P  V  C  C  K  D  H  N  N  I  S  N  L  L  V  L  H  Q  * :   *  I  S  H  Q  G  F  H  H  H  L  Y  *  I  I  R  W  S  P  L  Q  T  K  I  I  I  R  V  I  I  Y  L  C  G  L  K  M  *  R :   W  L  A  *  R  D  H  I  P  S  L  Q  S  F  H  Q  S  L  H  F  T  A  N  F  L  Q  P  M  L  T  L  H  R  D  H  L  N  Q  L  P  A  A  M  N  V  Q  P  V  *  N  Q  E  I  C  S  K   : E  K  L  L  Q  D  Q  G  L  Y  P  S  P  N  Q  G  M  L  S  G  K  I  K  L  S  M  E  I  F  S  R  W  L  L  L  Q  P  L  L  H  I  S  I  H  L  I  Q  T  F  R  V  *  R  D  L  D  W  N  Q  *  L  V  R :   E  L  L  K  N  L  L  Q  Q  A  Q  P  *  A  N  Q  F  N  N  P  S  M  D  S  S  Q  L  P  R  Y  K  S  A  K  K  E  Q  T  N  A  I  A  M  L  K  *  E  E  T  L  I  S  I  *  S  C  R  S  *  S  L  H  M  V  V  L  L  P  G  E  F   </second_frame>
            <third_frame>   Y  E  *  R  I  E  K  S  E  A  E  K  N  T  T  K  R  T  W  C  C  S  T  *  K  D  *  N  G  R  G  E  K  T  *  K  R  C  K  L  S  N  T  *  C  F  G  T  K  F  S  S  F  Y  Q  N  Y  V  K  M  L  S  C  *  R  F  *  F  *  A  *  F  N  H  F  T  T  T  I  N  N  G  S  A  F  E  K  *  C  L  *  T  R  S  V  C  L  S  S  *  W  F  P  S  Q  D  F  T  I  I  K  T  N  E  H  G  W  R  G  V  K  L  V  V  C  F  G  S  R  E  *  *  M  S  *  I  V  E  L  *  V  Q  S  *  K  R  K  Q  T  G  K  S  S  W  C  C  F  R  G  *  C  R  F  A  K  *  T  A  *  P  H  F  T  S  T  Q  C  A  A  K  I  T  T  I  S  A  T  F  L  F  F  I  N   : D  E  Y  L  I  R  D  F  I  I  I  C  T  K  L  S  D  G  A  P  F  K  P  K  L  L  F  V  *  L  F  T  S  V  A  *  R  C  E   : D  G  W  H  E  E  T  I  S  L  H  S  R  V  S  T  S  P  Y  I  S  L  Q  I  S  S  S  L  C  *  P  C  I  E  I  T  *  I  S  F  L  Q  Q  *  M  C  S  Q  F  R  I  R  K  F  A  Q  K  :  R  S  S  F  R  I  K  D  S  I  R  V  Q  T  K  G  C  Y  Q  A  K  *  S  S  Q  W  R  F  S  H  V  G  S  S  Y  S  R  F  S  I  S  A  F  I  *  F  K  P  S  E  S  R  E  I  *  I  G  I  S  D  L  S   : G  S  C  *  R  T  Y  Y  N  K  L  S  P  K  Q  I  S  S  T  I  H  L  W  I  L  P  N  C  Q  G  T  N  Q  P  R  R  N  K  Q  T  Q  L  P  C  *  S  R  R  K  H  *  S  Q  S  E  A  V  E  V  S  H  Y  T  W  L  C  F  F  R  E  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79278" stop="78697"/>
                    <exon start="78578" stop="78462"/>
                    <exon start="77563" stop="77394"/>
                    <exon start="77313" stop="77127"/>
                    <exon start="77029" stop="76859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSRGSKKVKQKKIPQRGLGVAQLERIRMEGEKKHEKDANFQTPNVLVPNSVHSTKTMSKCLAVEGSSFRPSSITLPPPSTMDLLSKNSVFRPDLSALVLDGFRPKTLQSSKPMNMGGGELSWSSVSGPGSDKCPKLWSCEYSPERESKQGNRHGVVFGANVDLPNELHNPILPLPSVLQRSQQYQQPSCSSSMMNISSGISSSSVLNYQMEPPSNQNYYSCNYLPLWPEDVKMVGMKRPYPFTPEFPPVPTFHCKFPPAYVNLASRSPESASCSNECAASLESGNLLKREAPSGSRTLSESKPRDVIRQNKALNGDFLTLAPPTAASPYQHSSNSNLQSLERFRLESVTCQGVAEEPTTTSSALSKSVQQSIYGFFPTAKVQISQEGTNKRNCHVEVGGNIDLNLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78741" e_stop="78697"/>
            <exon e_start="78578" e_stop="77916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78741" e_stop="78697" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="78578" e_stop="77916" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78741" stop="78697"/>
              <exon start="78578" stop="77916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78739" stop="78697"/>
              <exon start="78578" stop="78076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG : ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</gDNA_template>
            <first_frame> Q  R  S  Q  Q  Y  Q  Q  P  S  C  S  S  S  M  :  M  N  I  S  S  G  I  S  S  S  S  V  L  N  Y  Q  M  E  P  P  S  N  Q  N  Y  Y  S  C  N  Y  L  P  L  W  P  E  D  V  K  V  I  S  F  I  L  R  V  S  H  *  Y  I  E  I  N  F  H  N  A  L  F  C  Q  K  A  E  I  H  F  T  W  I  S  Y  *  F  *  *  G  S  *  F  V  Q  N  R  Y  V  K  C  S  F  N  Y  K  D  G  Y  M  S  F  T  S  N  V  L  N  I  S  F  L  R  T  *  *  *  K  T  L  L  H  T  F  Y  C  Q  N  K  V  K  E  L  L  F  V  A  L  N  *  Y  S  D  T  *  *  K  E  H  L  K  S  E  K  R  C  S  L  S  S  G  Y  T  L  H  S  P  Q  I  V  G  *  L  H  S  C  P  F  V  A  Q  T  V  L  V  F  F  H  L  N  K  L  S  E  D  N  D  L  K  T  K  R  H  V  T  I  T  I  H  K  C  V  T  H  V  C  N  H  Y  F  S  A </first_frame>
            <second_frame>  K  D  H  N  N  I  S  N  L  L  V  L  H  Q  * :   *  I  S  H  Q  G  F  H  H  H  L  Y  *  I  I  R  W  S  P  L  Q  T  K  I  I  I  R  V  I  I  Y  L  C  G  L  K  M  *  R  *  F  L  L  F  C  V  L  V  T  N  I  *  K  S  I  F  I  M  L  S  S  V  K  R  L  K  Y  T  L  P  G  Y  P  I  D  S  S  K  D  L  S  L  Y  R  T  V  M  *  N  V  L  L  I  I  K  M  D  T  C  H  L  H  P  M  C  *  T  S  L  F  F  E  L  D  S  R  K  H  Y  Y  T  P  S  T  A  K  T  R  *  R  S  F  S  L  W  P  *  T  N  I  Q  I  L  D  E  K  S  I  L  K  A  R  R  D  A  H  S  A  Q  V  T  P  S  T  P  H  K  L  *  D  S  S  I  V  V  P  L  L  L  K  Q  F  S  C  S  F  I  *  T  S  Y  L  R  I  M  T  *  K  P  R  D  M  S  Q  S  Q  F  T  N  V  L  H  M  Y  A  I  I  I  S  V   </second_frame>
            <third_frame>   K  I  T  T  I  S  A  T  F  L  F  F  I  N   : D  E  Y  L  I  R  D  F  I  I  I  C  T  K  L  S  D  G  A  P  F  K  P  K  L  L  F  V  *  L  F  T  S  V  A  *  R  C  E  G  N  F  F  Y  S  A  C  *  S  L  I  Y  R  N  Q  F  S  *  C  S  L  L  S  K  G  *  N  T  L  Y  L  D  I  L  L  I  L  V  R  I  L  V  C  T  E  P  L  C  E  M  F  F  *  L  *  R  W  I  H  V  I  Y  I  Q  C  V  E  H  L  F  S  S  N  L  I  V  E  N  I  I  T  H  L  L  L  P  K  Q  G  K  G  A  S  L  C  G  P  K  L  I  F  R  Y  L  M  K  R  A  S  *  K  R  E  E  M  L  T  Q  L  R  L  H  P  P  L  P  T  N  C  R  I  A  P  *  L  S  L  C  C  S  N  S  S  R  V  L  S  S  K  Q  A  I  *  G  *  *  L  K  N  Q  E  T  C  H  N  H  N  S  Q  M  C  Y  T  C  M  Q  S  L  F  Q  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78741" stop="78697"/>
                    <exon start="78578" stop="78429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRSQQYQQPSCSSSMMNISSGISSSSVLNYQMEPPSNQNYYSCNYLPLWPEDVKVISFILRVSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="96315" PGL_stop="95236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96315" e_stop="95609"/>
            <exon e_start="95527" e_stop="95236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96315" e_stop="95609" e_length="707"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95527" e_stop="95236" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96315" stop="95609"/>
              <exon start="95527" stop="95426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96315" stop="95629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96314" stop="95799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96009" stop="95609"/>
              <exon start="95527" stop="95236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95703" stop="95609"/>
              <exon start="95527" stop="95240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230931" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95667" stop="95609"/>
              <exon start="95527" stop="95238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95662" stop="95609"/>
              <exon start="95527" stop="95238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230431" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG : GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGTAT</gDNA_template>
            <first_frame> V  L  C  L  I  L  *  I  L  M  R  F  L  I  P  S  N  H  F  S  Q  W  E  V  V  V  Q  M  K  V  I  L  S  R  V  F  N  N  I  I  *  C  Q  E  A  K  I  *  S  F  L  Y  N  L  F  K  I  H  K  L  S  L  K  H  Q  I  S  L  L  D  L  M  L  Q  C  G  L  S  T  S  S  S  R  L  N  L  V  D  W  R  L  L  V  E  T  L  V  A  G  Q  L  L  E  Q  V  V  I  C  L  T  L  S  L  P  R  R  Y  Y  N  N  C  S  L  K  I  S  F  C  L  R  G  D  P  F  S  P  V  T  H  L  R  F  V  H  G  *  I  H  Q  R  L  L  S  P  Q  L  I  Q  F  T  K  T  K  T  I  I  K  L  C  F  L  C  I  Q  H  H  F  L  A  S  D  S  P  Q  N  *  A  D  S  L  A  F  A  F  L  H  E  S  K  V  K  *  R  R  S  M  M  V  F  P  T  N  H  P  L  L  P  L  I  L  V  I  E  S  A  R  K  H  N  L  P  L  *  P  D  R :   N  K  Y  Y  I  *  R  W  K  W  E  K  T  S  Q  G  K  R  D  N  P  F  L  S  S  L  I  Q  *  E  C  T  A  E  E  E  S  *  A  *  F  Q  V  F  F  *  D  *  I  A  V  *  C  S  C  I  S  V  F  F  C  C  *  V  V  V  V  V  V  V  V  C  L  L  S  S  V  H  *  N  K  *  F  S  L  E  *  Q  L  L  S  T  *  L  I  W  Y </first_frame>
            <second_frame>  F  Y  A  S  F  F  R  F  *  C  D  F  *  Y  H  Q  I  I  F  P  N  G  R  *  W  F  K  *  R  *  F  F  P  E  F  S  T  T  *  F  D  V  K  K  P  R  F  E  A  F  F  T  I  F  S  R  S  T  S  S  V  *  S  I  K  F  L  Y  W  I  *  C  F  S  V  A  S  A  P  A  A  A  G  *  T  W  S  T  G  G  C  S  W  R  H  W  W  R  G  N  C  W  S  R  *  L  S  V  *  L  S  A  C  P  A  A  I  T  T  I  V  H  S  K  S  V  F  V  S  E  G  T  P  S  V  Q  L  L  T  F  D  S  C  M  D  R  S  I  S  D  C  Y  R  H  S  *  S  N  S  P  K  P  K  P  S  S  S  C  V  S  Y  V  F  N  I  T  F  W  H  R  I  R  L  R  I  R  R  I  L  W  L  S  H  S  Y  T  N  P  R  *  N  R  G  G  A  *  W  C  F  R  Q  T  I  L  C  F  L  *  F  S  S  L  N  Q  L  G  N  T  I  S  H  Y  N  L  T   : G  T  S  T  I  F  E  D  G  N  G  K  R  Q  V  R  E  S  A  I  I  H  F  Y  R  V  *  F  S  E  N  A  P  R  K  K  N  P  E  H  S  F  R  F  F  S  K  I  K  *  R  C  N  V  H  V  *  V  C  F  S  V  A  K  L  L  L  L  L  L  L  C  A  Y  Y  L  Q  F  I  R  T  S  N  F  L  L  N  D  N  Y  Y  Q  P  D  *  F  G   </second_frame>
            <third_frame>   F  M  P  H  S  L  D  S  D  A  I  S  D  T  I  K  S  F  F  P  M  G  G  S  G  S  N  E  G  N  S  F  Q  S  F  Q  Q  H  N  L  M  S  R  S  Q  D  L  K  L  S  L  Q  S  F  Q  D  P  Q  A  Q  F  E  A  S  N  F  F  T  G  F  D  A  S  V  W  P  Q  H  Q  Q  Q  P  V  E  L  G  R  L  A  A  A  R  G  D  I  G  G  G  A  I  A  G  A  G  S  Y  L  F  N  S  Q  P  A  P  P  L  L  Q  Q  L  F  T  Q  N  Q  F  L  S  Q  R  G  P  L  Q  S  S  Y  S  P  S  I  R  A  W  I  D  P  S  A  I  A  I  A  T  A  D  P  I  H  Q  N  Q  N  H  H  Q  A  V  F  P  M  Y  S  T  S  L  S  G  I  G  F  A  S  E  L  G  G  F  S  G  F  R  I  P  T  R  I  Q  G  E  I  E  E  E  H  D  G  V  S  D  K  P  S  S  A  S  S  D  S  R  H  *  I  S  S  E  T  Q  S  P  I  I  T  *  Q  :  E  Q  V  L  Y  L  K  M  E  M  G  K  D  K  S  G  K  A  R  *  S  I  F  I  E  S  D  S  V  R  M  H  R  G  R  R  I  L  S  I  V  S  G  F  F  L  R  L  N  S  G  V  M  F  M  Y  K  C  V  F  L  L  L  S  C  C  C  C  C  C  C  V  L  I  I  F  S  S  L  E  Q  V  I  F  S  *  M  T  I  I  I  N  L  I  D  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96313" stop="95648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMPHSLDSDAISDTIKSFFPMGGSGSNEGNSFQSFQQHNLMSRSQDLKLSLQSFQDPQAQFEASNFFTGFDASVWPQHQQQPVELGRLAAARGDIGGGAIAGAGSYLFNSQPAPPLLQQLFTQNQFLSQRGPLQSSYSPSIRAWIDPSAIAIATADPIHQNQNHHQAVFPMYSTSLSGIGFASELGGFSGFRIPTRIQGEIEEEHDGVSDKPSSASSDSRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95467" stop="95270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFIESDSVRMHRGRRILSIVSGFFLRLNSGVMFMYKCVFLLLSCCCCCCCVLIIFSSLEQVIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="105203" PGL_stop="106275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105203" e_stop="105206"/>
            <exon e_start="105508" e_stop="106275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.633" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="105203" e_stop="105206" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.633" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105207" i_stop="105507" i_length="301"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="105508" e_stop="106275" e_length="768"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105203" stop="105206"/>
              <exon start="105508" stop="106275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAG : ATGTTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGGTTGTAATAAATTTTTCAGAAACATGAAATAACTGAGATTTATAGAACCAGTAAGTAAGATGAACATAAATTTATTTGTAAAAAATAATTGAATCTGTAAAAACTTACCAGAATCTGGAATACTCTTTTTTATCTTGAAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTTATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTGTAGATACCAAAAACTCTATTGTCAGCGAATCAAGCCACAGCAGGAAAGTACACGAAGAAATATGTGTTTAGAAGAAGAAGGAAGATCAGAAAATTCGTAATAAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAATTTTAAATATAACGGAAATTAAACGGGTCACGTGCGCGGATTCGAGTCGGGTCGGATTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATAAAATAATTAATTGAAAATAATTTTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCTAAAAAATAATCTCTCGATCATTTGCCAAAGCTGTAGCCG</gDNA_template>
            <first_frame> R   : D  V  C  Q  S  V  L  *  K  S  E  I  T  G  C  N  K  F  F  R  N  M  K  *  L  R  F  I  E  P  V  S  K  M  N  I  N  L  F  V  K  N  N  *  I  C  K  N  L  P  E  S  G  I  L  F  F  I  L  K  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  R  G  F  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  A  T  A  G  K  Y  T  K  K  Y  V  F  R  R  R  R  K  I  R  K  F  V  I  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  F  *  K  V  A  T  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  M  A  G  I  L  N  I  T  E  I  K  R  V  T  C  A  D  S  S  R  V  G  L  T  K  K  L  K  T  F  R  L  T  S  V  I  K  *  L  I  E  N  N  F  F  V  H  L  I  N  *  I  N  K  *  N  K  F  V  *  K  I  I  S  R  S  F  A  K  A  V  A  </first_frame>
            <second_frame>  E  :  M  F  A  N  L  C  Y  E  N  Q  K  L  L  V  V  I  N  F  S  E  T  *  N  N  *  D  L  *  N  Q  *  V  R  *  T  *  I  Y  L  *  K  I  I  E  S  V  K  T  Y  Q  N  L  E  Y  S  F  L  S  *  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  L  F  G  I  *  P  P  R  V  K  *  S  *  S  V  E  C  R  Y  Q  K  L  Y  C  Q  R  I  K  P  Q  Q  E  S  T  R  R  N  M  C  L  E  E  E  G  R  S  E  N  S  *  *  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  S  W  R  E  F  *  I  *  R  K  L  N  G  S  R  A  R  I  R  V  G  S  D  *  L  K  S  *  K  H  F  G  *  L  L  L  *  N  N  *  L  K  I  I  F  L  S  I  *  L  I  K  *  I  N  K  I  N  L  S  K  K  *  S  L  D  H  L  P  K  L  *  P </second_frame>
            <third_frame>   R :   C  L  P  I  C  V  M  K  I  R  N  Y  W  L  *  *  I  F  Q  K  H  E  I  T  E  I  Y  R  T  S  K  *  D  E  H  K  F  I  C  K  K  *  L  N  L  *  K  L  T  R  I  W  N  T  L  F  Y  L  E  R  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  Y  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  V  D  T  K  N  S  I  V  S  E  S  S  H  S  R  K  V  H  E  E  I  C  V  *  K  K  K  E  D  Q  K  I  R  N  K  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  I  L  K  G  C  N  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  H  G  G  N  F  K  Y  N  G  N  *  T  G  H  V  R  G  F  E  S  G  R  I  N  *  K  V  E  N  I  S  V  N  F  C  Y  K  I  I  N  *  K  *  F  F  C  P  F  N  *  L  N  K  *  I  K  *  I  C  L  K  N  N  L  S  I  I  C  Q  S  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="108387" PGL_stop="108032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108387" e_stop="108032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="108387" e_stop="108032" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108387" stop="108032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108387" stop="108060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCATAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGCCAAAAAAAAGTTGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGCTGAAGATGATCCTACCAAAGACAAAAAGAAAAAAAAGTCCAACGGGTAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</gDNA_template>
            <first_frame> F  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  K  N  A  K  K  K  L  R  K  S  S  T  I  I  G  V  N  I  A  E  D  D  P  T  K  D  K  K  K  K  K  S  N  G  *  K  S  E  *  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  T  I  S  R  I  I  *  S  I  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  K  M  P  K  K  S  C  V  R  V  Q  Q  S  L  E  L  I  L  L  K  M  I  L  P  K  T  K  R  K  K  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  G  L  L  </second_frame>
            <third_frame>   Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  R  F  Q  E  L  S  K  A  *  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  Q  K  K  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  *  S  Y  Q  R  Q  K  E  K  K  V  Q  R  V  E  V  R  I  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  V  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108387" stop="108106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNKNAKKKLRKSSTIIGVNIAEDDPTKDKKKKKSNG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108236" stop="108033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSRLRKITKMPKKSCVRVQQSLELILLKMILPKTKRKKSPTGRSQNRPRRNSKATVIIVARLVIGLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="125066" PGL_stop="130474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125066" e_stop="125471"/>
            <exon e_start="126987" e_stop="127201"/>
            <exon e_start="130397" e_stop="130474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.934" e_score="0.967"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125066" e_stop="125471" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125472" i_stop="126986" i_length="1515"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="126987" e_stop="127201" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.896" acc_prob="0.934">
            <gDNA_intron_boundary i_start="127202" i_stop="130396" i_length="3195"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="130397" e_stop="130474" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125066" stop="125471"/>
              <exon start="126987" stop="127131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125391" stop="125471"/>
              <exon start="126987" stop="127201"/>
              <exon start="130397" stop="130474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAG : GTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAGATCTAGTTAAAGATGGTGCGTCTTTGTTGCTCATTGGTCCTCCTGGAGTAGGAAAAACAACTATTATCAG : GGACATAGCCAGGATGCTTGCAAATGATTATAGGAAGCGCGTAATGATTGTGGACACCTCTAATGAAATTGGTGGGGA</gDNA_template>
            <first_frame> S  N  A  L  F  R  F  S  P  S  S  S  F  F  F  P  K  P  T  V  P  F  S  P  Q  K  S  N  S  A  N  S  I  T  Q  L  F  T  I  Y  C  N  T  H  K  I  A  E  *  T  L  L  L  P  L  I  I  F  G  I  V  V  F  F  G  C  *  *  L  S  S  G  I  G  S  V  I  V  F  V  A  G  G  N  A  A  R  S  *  R  T  P  G  I  F  Q  F  N  *  G  G  Y  G  L  R  S  *  A  T  C  S  L  P  F  W  R  F  H  L  I  R  S  T  D  Y  F  G  *  S  S  T  S  Y  L  A   : G  W  *  L  C  S  *  Q  *  S  W  H  *  Q  N  F  T  P  N  *  C  Y  *  K  S  E  R  C  N  Y  W  F  N  L  S  S  W  S  C  N  I  W  K  C  K  L  I  A  R  S  S  *  R  W  C  V  F  V  A  H  W  S  S  W  S  R  K  N  N  Y  Y  Q  :  G  H  S  Q  D  A  C  K  *  L  *  E  A  R  N  D  C  G  H  L  *  *  N  W  W  G </first_frame>
            <second_frame>  A  M  L  S  F  A  L  V  H  L  H  P  S  S  S  P  N  P  Q  F  H  F  P  H  K  N  Q  I  L  P  I  Q  S  L  N  F  S  P  F  T  V  I  P  T  K  L  L  S  K  P  S  F  S  R  L  L  S  S  V  S  S  S  S  L  V  A  D  D  F  Q  V  E  L  G  R  L  L  S  L  L  P  E  E  M  R  R  G  V  S  E  H  P  E  Y  S  N  L  I  E  V  V  M  D  L  G  R  K  P  L  A  R  F  P  S  G  D  F  I  L  S  D  Q  P  I  T  L  G  D  L  Q  Q  A  T  S  Q  :  V  G  D  F  A  V  D  N  R  A  G  I  S  R  T  L  H  R  I  S  A  I  R  N  R  K  G  A  I  I  G  L  T  C  R  V  G  R  A  I  S  G  S  A  N  S  L  R  D  L  V  K  D  G  A  S  L  L  L  I  G  P  P  G  V  G  K  T  T  I  I  R :   D  I  A  R  M  L  A  N  D  Y  R  K  R  V  M  I  V  D  T  S  N  E  I  G  G   </second_frame>
            <third_frame>   Q  C  S  L  S  L  *  S  I  F  I  L  L  L  P  Q  T  H  S  S  I  F  P  T  K  I  K  F  C  Q  F  N  H  S  T  F  H  H  L  L  *  Y  P  Q  N  C  *  V  N  P  P  S  P  A  Y  Y  L  R  Y  R  R  L  L  W  L  L  M  T  F  K  W  N  W  V  G  Y  C  L  C  C  R  R  K  C  G  E  E  L  A  N  T  R  N  I  P  I  *  L  R  W  L  W  T  *  V  V  S  H  L  L  A  S  L  L  E  I  S  S  Y  P  I  N  R  L  L  W  V  I  F  N  K  L  P  R  R :   L  V  T  L  Q  L  T  I  E  L  A  L  A  E  L  Y  T  E  L  V  L  L  E  I  G  K  V  Q  L  L  V  *  L  V  E  L  V  V  Q  Y  L  E  V  Q  T  H  C  E  I  *  L  K  M  V  R  L  C  C  S  L  V  L  L  E  *  E  K  Q  L  L  S   : G  T  *  P  G  C  L  Q  M  I  I  G  S  A  *  *  L  W  T  P  L  M  K  L  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125067" stop="125471"/>
                    <exon start="126987" stop="127201"/>
                    <exon start="130397" stop="130472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLSFALVHLHPSSSPNPQFHFPHKNQILPIQSLNFSPFTVIPTKLLSKPSFSRLLSSVSSSSLVADDFQVELGRLLSLLPEEMRRGVSEHPEYSNLIEVVMDLGRKPLARFPSGDFILSDQPITLGDLQQATSQVGDFAVDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANSLRDLVKDGASLLLIGPPGVGKTTIIRDIARMLANDYRKRVMIVDTSNEIGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="130855" PGL_stop="133544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130855" e_stop="131022"/>
            <exon e_start="131742" e_stop="131904"/>
            <exon e_start="132038" e_stop="132190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.489" e_score="0.988"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130855" e_stop="131022" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.993">
            <gDNA_intron_boundary i_start="131023" i_stop="131741" i_length="719"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="131742" e_stop="131904" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.754" acc_prob="0.489">
            <gDNA_intron_boundary i_start="131905" i_stop="132037" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="132038" e_stop="132190" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130855" stop="131022"/>
              <exon start="131742" stop="131904"/>
              <exon start="132038" stop="132190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATGCCACAAGTGATTGTAATCGATGAGATTGGTACTAAGCTTGAGGCAATGGCTGCAAGCACCATTGCACAACGAGGAATTCAGTTAGTTGCAACTGCTCATGGAGTAACAATAGAGAATTTAGTAATGAATCCTGCTTTAGAGATGCTGGTTGGAGGAGTACAG : AGTGTGACACTTGGGGATGAAGAGGCTAGCAGGCGACGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAG : GACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATTATGGAAATTTCATCCATCCAAGCACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTG</gDNA_template>
            <first_frame> H  M  P  Q  V  I  V  I  D  E  I  G  T  K  L  E  A  M  A  A  S  T  I  A  Q  R  G  I  Q  L  V  A  T  A  H  G  V  T  I  E  N  L  V  M  N  P  A  L  E  M  L  V  G  G  V  Q  :  S  V  T  L  G  D  E  E  A  S  R  R  R  V  Q  K  S  V  L  E  R  K  G  P  S  S  F  S  C  G  V  E  I  I  S  K  A  E  L  R  V  H  P  D  L  E  A  T  V  D  A  I  L  A   : G  R  Y  P  K  Y  E  I  R  K  I  N  P  G  S  Q  D  G  I  M  E  I  S  S  I  Q  A  P  L  D  E  I  N  E  V  L  I  E  D  I  I  Q  I  N  G  G  I  P  D  S  T  </first_frame>
            <second_frame>  I  C  H  K  *  L  *  S  M  R  L  V  L  S  L  R  Q  W  L  Q  A  P  L  H  N  E  E  F  S  *  L  Q  L  L  M  E  *  Q  *  R  I  *  *  *  I  L  L  *  R  C  W  L  E  E  Y  R :   V  *  H  L  G  M  K  R  L  A  G  D  A  F  R  N  L  F  W  R  G  K  V  H  H  L  L  A  V  G  L  R  *  S  P  R  Q  N  *  E  F  T  L  I  *  K  Q  Q  *  M  Q  F  L  Q  :  D  V  T  Q  N  M  K  F  A  R  *  I  Q  D  R  K  M  E  L  W  K  F  H  P  S  K  H  H  *  M  K  *  M  K  F  *  L  K  I  *  S  R  L  M  E  V  Y  L  I  Q  L </second_frame>
            <third_frame>   Y  A  T  S  D  C  N  R  *  D  W  Y  *  A  *  G  N  G  C  K  H  H  C  T  T  R  N  S  V  S  C  N  C  S  W  S  N  N  R  E  F  S  N  E  S  C  F  R  D  A  G  W  R  S  T   : E  C  D  T  W  G  *  R  G  *  Q  A  T  R  S  E  I  C  S  G  E  E  R  S  I  I  F  *  L  W  G  *  D  N  L  Q  G  R  I  E  S  S  P  *  F  R  S  N  S  R  C  N  S  C  R :   T  L  P  K  I  *  N  S  Q  D  K  S  R  I  A  R  W  N  Y  G  N  F  I  H  P  S  T  I  R  *  N  K  *  S  F  D  *  R  Y  N  P  D  *  W  R  Y  T  *  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130855" stop="131022"/>
                    <exon start="131742" stop="131904"/>
                    <exon start="132038" stop="132189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLVMNPALEMLVGGVQSVTLGDEEASRRRVQKSVLERKGPSSFSCGVEIISKAELRVHPDLEATVDAILAGRYPKYEIRKINPGSQDGIMEISSIQAPLDEINEVLIEDIIQINGGIPDST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="132432" e_stop="133237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="132432" e_stop="133237" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132432" stop="133237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAGAGAATCAATTTCCAAAAAGTGAAATACCTCCTAGTACATGATGGTTCTGCATTCGTATACTATTGTTACTTAATTTGCTGCAAAGTTAGTCTCTTTCAATTTGTGGATCTAATAAACCTGATTTGATGCTTCTCCAGTATCCTAATAGTCTCCTTGTTTTCCTATCTTTTCATGTTAAGGTCCCACATACCCCCTTCCTCTGCTGGAAGTGCTTGGTGGCCCCAAACATGAAGTGTAGAAGTATCGAGCAGGAATGATTTTTTTCTTTTGGCTGACTATTCAAATTCAAGCCCCAGCAATTTTTTTTTTTTAAAAAATATTCCTGGAAGAAAAGATCACATGCTTGAATTTTGTCACTCCTTGTATAGGCGGAAAAAGAGTAGATGTTCTTCTATGCTTTAGCTCATTAAGATTTCACCCATTAAAATACTTGTCAAAGACACATTTTAGAATTACAGAGCCTCCTCTTCAAACTTTATATCATCTAATGAAGCATTTGAGTTAATCCACTCTCTTTTCCTTTTAGTTCTCTAAATTTTTTAACTTCTATGAGGGAAAGTGTAGCATAGAATAAGAGATTCTTATGAAGAAAACGTAATAGAAGAGAGGAAAAAACACGATAAAGCTCCATCAGCTTCTATATGGAAACATCTACGTGGAACTCATATTTGAGCAGGTATTGTAGATCTCAGAGGCAAGTGTGATGCAAGGGATAAAACAGCTTAACATTGACGATACGTTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTA</gDNA_template>
            <first_frame> R  K  R  I  N  F  Q  K  V  K  Y  L  L  V  H  D  G  S  A  F  V  Y  Y  C  Y  L  I  C  C  K  V  S  L  F  Q  F  V  D  L  I  N  L  I  *  C  F  S  S  I  L  I  V  S  L  F  S  Y  L  F  M  L  R  S  H  I  P  P  S  S  A  G  S  A  W  W  P  Q  T  *  S  V  E  V  S  S  R  N  D  F  F  L  L  A  D  Y  S  N  S  S  P  S  N  F  F  F  L  K  N  I  P  G  R  K  D  H  M  L  E  F  C  H  S  L  Y  R  R  K  K  S  R  C  S  S  M  L  *  L  I  K  I  S  P  I  K  I  L  V  K  D  T  F  *  N  Y  R  A  S  S  S  N  F  I  S  S  N  E  A  F  E  L  I  H  S  L  F  L  L  V  L  *  I  F  *  L  L  *  G  K  V  *  H  R  I  R  D  S  Y  E  E  N  V  I  E  E  R  K  K  H  D  K  A  P  S  A  S  I  W  K  H  L  R  G  T  H  I  *  A  G  I  V  D  L  R  G  K  C  D  A  R  D  K  T  A  *  H  *  R  Y  V  *  V  Y  *  *  Y  Q  *  S  R  C  A  T  C  S  A  V  Q  A   </first_frame>
            <second_frame>  E  R  E  S  I  S  K  K  *  N  T  S  *  Y  M  M  V  L  H  S  Y  T  I  V  T  *  F  A  A  K  L  V  S  F  N  L  W  I  *  *  T  *  F  D  A  S  P  V  S  *  *  S  P  C  F  P  I  F  S  C  *  G  P  T  Y  P  L  P  L  L  E  V  L  G  G  P  K  H  E  V  *  K  Y  R  A  G  M  I  F  F  F  W  L  T  I  Q  I  Q  A  P  A  I  F  F  F  *  K  I  F  L  E  E  K  I  T  C  L  N  F  V  T  P  C  I  G  G  K  R  V  D  V  L  L  C  F  S  S  L  R  F  H  P  L  K  Y  L  S  K  T  H  F  R  I  T  E  P  P  L  Q  T  L  Y  H  L  M  K  H  L  S  *  S  T  L  F  S  F  *  F  S  K  F  F  N  F  Y  E  G  K  C  S  I  E  *  E  I  L  M  K  K  T  *  *  K  R  G  K  N  T  I  K  L  H  Q  L  L  Y  G  N  I  Y  V  E  L  I  F  E  Q  V  L  *  I  S  E  A  S  V  M  Q  G  I  K  Q  L  N  I  D  D  T  F  E  F  T  D  N  I  S  E  A  D  V  L  L  A  L  Q  S  K  L  </second_frame>
            <third_frame>   K  E  N  Q  F  P  K  S  E  I  P  P  S  T  *  W  F  C  I  R  I  L  L  L  L  N  L  L  Q  S  *  S  L  S  I  C  G  S  N  K  P  D  L  M  L  L  Q  Y  P  N  S  L  L  V  F  L  S  F  H  V  K  V  P  H  T  P  F  L  C  W  K  C  L  V  A  P  N  M  K  C  R  S  I  E  Q  E  *  F  F  S  F  G  *  L  F  K  F  K  P  Q  Q  F  F  F  F  K  K  Y  S  W  K  K  R  S  H  A  *  I  L  S  L  L  V  *  A  E  K  E  *  M  F  F  Y  A  L  A  H  *  D  F  T  H  *  N  T  C  Q  R  H  I  L  E  L  Q  S  L  L  F  K  L  Y  I  I  *  *  S  I  *  V  N  P  L  S  F  P  F  S  S  L  N  F  L  T  S  M  R  E  S  V  A  *  N  K  R  F  L  *  R  K  R  N  R  R  E  E  K  T  R  *  S  S  I  S  F  Y  M  E  T  S  T  W  N  S  Y  L  S  R  Y  C  R  S  Q  R  Q  V  *  C  K  G  *  N  S  L  T  L  T  I  R  L  S  L  L  I  I  S  V  K  Q  M  C  Y  L  L  C  S  P  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0021L02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="131662" e_stop="131904"/>
            <exon e_start="132038" e_stop="132270"/>
            <exon e_start="133114" e_stop="133299"/>
            <exon e_start="133458" e_stop="133544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.754" acc_prob="0.489" e_score="0.967"/>
          <exon-intron don_prob="0.987" acc_prob="0.788" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.978"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="131662" e_stop="131904" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.754" acc_prob="0.489">
            <gDNA_intron_boundary i_start="131905" i_stop="132037" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="132038" e_stop="132270" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.788">
            <gDNA_intron_boundary i_start="132271" i_stop="133113" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="133114" e_stop="133299" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="133300" i_stop="133457" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="0.943">
            <gDNA_exon_boundary e_start="133458" e_stop="133544" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131662" stop="131904"/>
              <exon start="132038" stop="132270"/>
              <exon start="133114" stop="133299"/>
              <exon start="133458" stop="133544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTACTCTCATGCACTATTGGATGACTGGAAGCTGTTTGAGGTTTATAGTATAGTTGCATAACTTATTTCTTTGTCAGAGTGTGACACTTGGGGATGAAGAGGCTAGCAGGCGACGCGTTCAGAAATCTGTTCTGGAGAGGAAAGGTCCATCATCTTTTAGCTGTGGGGTTGAGATAATCTCCAAGGCAGAATTGAGAGTTCACCCTGATTTAGAAGCAACAGTAGATGCAATTCTTGCAG : GACGTTACCCAAAATATGAAATTCGCAAGATAAATCCAGGATCGCAAGATGGAATTATGGAAATTTCATCCATCCAAGCACCATTAGATGAAATAAATGAAGTTTTGATTGAAGATATAATCCAGATTAATGGAGGTATACCTGATTCAACTGAGCTCATCTCAGCAACAGGTCCGAGCATGGAAGGAGGTTCTGGTGAAAGTGAGGATGCCCTTTGCATTTTTCTATATGGG : GTATTGTAGATCTCAGAGGCAAGTGTGATGCAAGGGATAAAACAGCTTAACATTGACGATACGTTTGAGTTTACTGATAATATCAGTGAAGCAGATGTGCTACTTGCTCTGCAGTCCAAGCTTAAGAAAAATTCTCGGATTCAAGCAGCTGCAAGATCTCACGGCATTCCTATTTATGTGACAAAG : ACTAGCTCCTCAACACAGCTGACAAAGGCTATGCAGGCATTAATCAGTGATTTTGCTGATGGCTTTGAGTTTCTCGAATCTGAAGCT</gDNA_template>
            <first_frame> V  L  L  S  C  T  I  G  *  L  E  A  V  *  G  L  *  Y  S  C  I  T  Y  F  F  V  R  V  *  H  L  G  M  K  R  L  A  G  D  A  F  R  N  L  F  W  R  G  K  V  H  H  L  L  A  V  G  L  R  *  S  P  R  Q  N  *  E  F  T  L  I  *  K  Q  Q  *  M  Q  F  L  Q  :  D  V  T  Q  N  M  K  F  A  R  *  I  Q  D  R  K  M  E  L  W  K  F  H  P  S  K  H  H  *  M  K  *  M  K  F  *  L  K  I  *  S  R  L  M  E  V  Y  L  I  Q  L  S  S  S  Q  Q  Q  V  R  A  W  K  E  V  L  V  K  V  R  M  P  F  A  F  F  Y  M  G :   Y  C  R  S  Q  R  Q  V  *  C  K  G  *  N  S  L  T  L  T  I  R  L  S  L  L  I  I  S  V  K  Q  M  C  Y  L  L  C  S  P  S  L  R  K  I  L  G  F  K  Q  L  Q  D  L  T  A  F  L  F  M  *  Q  R :   L  A  P  Q  H  S  *  Q  R  L  C  R  H  *  S  V  I  L  L  M  A  L  S  F  S  N  L  K   </first_frame>
            <second_frame>  F  Y  S  H  A  L  L  D  D  W  K  L  F  E  V  Y  S  I  V  A  *  L  I  S  L  S  E  C  D  T  W  G  *  R  G  *  Q  A  T  R  S  E  I  C  S  G  E  E  R  S  I  I  F  *  L  W  G  *  D  N  L  Q  G  R  I  E  S  S  P  *  F  R  S  N  S  R  C  N  S  C  R :   T  L  P  K  I  *  N  S  Q  D  K  S  R  I  A  R  W  N  Y  G  N  F  I  H  P  S  T  I  R  *  N  K  *  S  F  D  *  R  Y  N  P  D  *  W  R  Y  T  *  F  N  *  A  H  L  S  N  R  S  E  H  G  R  R  F  W  *  K  *  G  C  P  L  H  F  S  I  W   : G  I  V  D  L  R  G  K  C  D  A  R  D  K  T  A  *  H  *  R  Y  V  *  V  Y  *  *  Y  Q  *  S  R  C  A  T  C  S  A  V  Q  A  *  E  K  F  S  D  S  S  S  C  K  I  S  R  H  S  Y  L  C  D  K   : D  *  L  L  N  T  A  D  K  G  Y  A  G  I  N  Q  *  F  C  *  W  L  *  V  S  R  I  *  S  </second_frame>
            <third_frame>   F  T  L  M  H  Y  W  M  T  G  S  C  L  R  F  I  V  *  L  H  N  L  F  L  C  Q  S  V  T  L  G  D  E  E  A  S  R  R  R  V  Q  K  S  V  L  E  R  K  G  P  S  S  F  S  C  G  V  E  I  I  S  K  A  E  L  R  V  H  P  D  L  E  A  T  V  D  A  I  L  A   : G  R  Y  P  K  Y  E  I  R  K  I  N  P  G  S  Q  D  G  I  M  E  I  S  S  I  Q  A  P  L  D  E  I  N  E  V  L  I  E  D  I  I  Q  I  N  G  G  I  P  D  S  T  E  L  I  S  A  T  G  P  S  M  E  G  G  S  G  E  S  E  D  A  L  C  I  F  L  Y  G  :  V  L  *  I  S  E  A  S  V  M  Q  G  I  K  Q  L  N  I  D  D  T  F  E  F  T  D  N  I  S  E  A  D  V  L  L  A  L  Q  S  K  L  K  K  N  S  R  I  Q  A  A  A  R  S  H  G  I  P  I  Y  V  T  K  :  T  S  S  S  T  Q  L  T  K  A  M  Q  A  L  I  S  D  F  A  D  G  F  E  F  L  E  S  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131718" stop="131904"/>
                    <exon start="132038" stop="132270"/>
                    <exon start="133114" stop="133122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHNLFLCQSVTLGDEEASRRRVQKSVLERKGPSSFSCGVEIISKAELRVHPDLEATVDAILAGRYPKYEIRKINPGSQDGIMEISSIQAPLDEINEVLIEDIIQINGGIPDSTELISATGPSMEGGSGESEDALCIFLYGVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133123" stop="133299"/>
                    <exon start="133458" stop="133544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEASVMQGIKQLNIDDTFEFTDNISEADVLLALQSKLKKNSRIQAAARSHGIPIYVTKTSSSTQLTKAMQALISDFADGFEFLESEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 270 chains have been computed
$ 
$ memory statistics:
$ 818376 bytes spliced alignments in total
$ 133 spliced alignments have been stored
$ 6153 bytes was the average size of a spliced alignment
$ 34440 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1565 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 335 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 02:38:57
-->
