<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 13:21:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328248" ref_strand="+" ref_description="SGN-U328248        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G04880.2 | Symbol: None | WRKY family transcription factor (ZAP1), identical to ZAP1 GI:1064883 from (Arabidopsis thaliana); contains Pfam profile: PF03106 WRKY DNA -binding domain | chr2:1717890-1720971 FORWARD | Aliases: None (evalue: 3e-25, score=112) genbank/nr: gi|16588566|gb|AAL26842.1| thermal hysteresis protein STHP-64 [Solanum dulcamara](evalue: 2e-148, score=522)">
      <seq>cttggtccaagtcaatgaacagctaccctttttgagtttctctgttggttgataagaaggaatcaaagaaaccccaggtgaaaattggggcaaaattgagcaggaggaagaagaaggataatgggtacccctaaagaagaggcaacagatgaagttttctctgagaatttagagcagaagccggaccctgaccctgcaaccagcaaattagagttaaaagctgatgttgtttctggtgaactgcagaagaggctgagtcaatgtgataaagagattaatgtgtcacaatccaatcaagaagctatttctctttctggagtacaagataaccagtcagaaaatgtgcggaagcaacaggttgttaagagtgaggctgatgcatctggatctagtcaactttctagtttaccaaaggactcagatgcaaaatcatgtggatcagaatctagtgtaaaagacaaagtggtttccgtgttatctggtaaagcttcagattcttcagatcaaatgcgtagttcgaacatggaggtttttgtatcacagtctgatctacaacgagtaagttataccataaagcgtgagaaagctttggataagttgcaaccaaggcggaaccctgacactagtgcccatgggttgacgtctgatcaaggaacgactctcctcaaggcacctgaaaaaccatcagaagatggatataactggcgaaaatatggtcagaagcttgtgaaaggaaatgagtttactcggagttattacaagtgcacattccctaattgtctagcaaaaaagcaagtggagagatcacatgacggacatattacagatatccactatattgggaagcatgagcatccggaaactctaagtgttccccagatgtcccccgagtatgtactccctttgcaaatgaaacggccagacattccaattatcactgcattagaagctgaaggtgagaaatcttctacgccccgagaaacatgtgaacctagtaagccaccagaagcccctctagcgttggccattgtatcagcttgtgatagtgtgaaggttacacctttgaagctgatataaattagaaaatgaagtcgataagggtgatagtgcagactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="5389" stop="10118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5689" g_stop="5804" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5805" i_stop="8733" i_length="2929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.388" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8734" g_stop="9566" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="949" r_length="833" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9567" i_stop="9643" i_length="77">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9644" g_stop="9819" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1126" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U328248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1125</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5689" e_stop="5804"/>
          <exon e_start="8734" e_stop="9566"/>
          <exon e_start="9644" e_stop="9819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTCCAAGTCAATGAACAGCTACCCTTTTTGAGTTTCTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAGGTACGGATTGTTAATTATTTTGTGATTTTTCAGTTTTTTTTTTGGTTTGATGTTTTATTGAGTGTTGTAGAATGTTGTTGTGTTGTAGAGCTTATTTTGTTGTGAATTTGAGGTTTTGAATTGATGGGGTTTGTGAAAAATTGATTCTTTTGGTTTGTTTTTGTACTGCTGTTTCTGGGTTTATGATTTTTTTTTTGAGTTTTGTAGAATGGAGATGTGTTGTTGAGCTAATTATATTGTGAATTTGGGGTTTTGAATTGATGGATTTTATGAAAAAATGATTCTTTTGCTTTGTTTTTGTATTGCTGTTTCTGGGTTTATGATTTTTTTTTTTTTGAGTTTTTTAGAATTGTGATATGTTGTAGAGCTAATTATATGTGAATTTGGGGTTTTGAATTGATACTTTTGCTTTGTTTTTGTATTACTGTTTCTGGGTTAGTAATTCTTTTTTTGAGTTCTATAGAATTGATATATGCTGTAGAGCTTATTTTATTGTGAATTTGGGGTTTTGAATTGATGAGTTTTGTCCAGTTTGGCTTTCAATTCTTTGCCTTTTGTGTTACTGTATCTGGGGTTTCTAATGTTTTCTAGAGTGTTGTAGAATTTCGTTACGTTCTAGGGATTATCATCTTGTGAATTTGGGGTCTTGAATTGATGGATTTTTTTCTAGTTTTTTTTTCGGAGGTGAGGGAAAGGGAAACGGAGGAGGGGGTTACAAGGTGAGGAATCGAACCTTCATCAACAAGGGGAAAGTTTAGGTAGCGCCAACCAATTGAGCTGATAAGATTCTCGATTGGTTTTTGTTCAGTTTTGTTTTCAATTTTTTTGTTTTCTGTGTGCTATTGTTTTTGGGTTTCTAATGGTTTCTCAAGTGTTGTAGAATTTCGTTACATTCTAGGGATTATTATTTTGTGAATTTGGGGTTTTGAGTTGATGGTTTTTTTTCTGTAGTTCAGTTTGATTTTCGATTCTTACGTTTATTGTTCTACTATTTCTGGATTTCTAATGTTTTCTGGAGTGTTGTGGAATTTCGGTATGTTCTAAAGCTTATGCTGATTAAAGACTTGTGGTTTAATGGTTACTTGATGTCACTCTATGTTATTAAAATTTGCTATGTTTATGGTGCTAGTTTTTTCTCCTTTCTGATTAATTTTTGCATCCTGTTGAGTTGTTGGTAAGACTCTAGCAGGAAGGTGTTGTGAAAACCCAGTTTTTCTTCATAAACATATGTAGACATTGCTAAATTGGAATGCCAATAAAGTGTCCCAAGATTTGCTTTAGAGTTCATGTTGCTTCGCGTGATCATATGAAATTGATTGGTTCGCCTTGTTCATGGCCCCATAGGAAAATTCCTAGATTTTCAAGTCTTTTCTCTCGTCATTTCCAAAAGAAACAGTGTAGAGTTCAGTTATCTCGTCAATGGCACCAATTCCATATGACTTGTCATGTCATAATATAATAACACAATTTTTCATGGTTACAACTTCTGAAAATGGCGTTCTGTATCAACTATCTATAGCCTTTAGGATACCTACTTATTTAGTAAGTTCCAACTGCACAACCACAACTTAGATGGTCTAACCACCCTATTTTTTCCGTTTTCTTTTCTTTTCTCTCTTTTGCACTTCCACATGGCTTCACTTATCAAGTGGGAATAGTTCAGCTCTTCACATTCATTGATCTTAGAATTGACCACTGTTTTGGTTTGTGTACAGCAATGGGAAATGTTCAAGTAATATCATAAATTGTACGTCTACAAATGTCAGTAGTACTATCACCAGAAAGCAGTTGCAAATTATTACTGCTGTTCCTTTCTACACATAAATCCTAGCTAAGATATAATACAAAAATTGCTCCGGACTTGTAAAAAGAGCGAGAAAGAAACTACATATTTTGCGTGACATGTTAACTATTTTTCCAATTGTATTCCTCCTTCTAGGTGAAAATTTTGTAGAGAGGAAAATTTAGGGCATGGTTTACAGTATTTGTGGTTGTAATGATTAAAGAAATTCAAATATGCATTGTCATTGCGCTTAAGTAAGGTATTTTCTCCAGTAAAGAAAAATTAACTAGAAGAAAAGGTTAGATAATGAAATATGTGTAGTTTGTAGGTTGCAAAATGAAGGTAGCTTTTCTTCTTTCCTTTTCAGTAGTTTACTTCCCAGTTTGGCAGATTCTTCATTTTTTCTGCCGAACCCATGTCGGCAAAACACAGTTGCGGATATGGTATTCGGTTAACCCACATAGAATAGGACTAATTTTGGGGGAAAATTGAGATTTTGATTTCTCAAAATAAAAGATAAAACAAAGTTAAGACATGGGAAATGGCATACCTTCAATCTTTTTTTTAGCTTTTCCTCTTGGTCAATGTTTGCTCTTTATAGATGTTTCTTTTTCATTAAAAAGAGGAATAATTTCTAAATTAATTATTTGCATGTTGATTTTTTGAGTATTAAAATATGTTTTTTTAATGCGCATATCTCTCAAACATTAGAATGTCTTTATAGCTCCACTTTTGTAATTTTGATTTTCTTTAACTGGATCCTAGCACTAGTATCCAAACCTTGATCTGTACCCCCGTATCTTAAATTTTGGATTTTGCTGAATCCTACCCTTGGATCCGCATCCGTGTTGGGTATCCTCACCCAAGTCTGAGCAACTTGTCGGTCAGTACTGTCAACAGAATGCTTCTTTTCCCATGAACTTCTATGTTTTTCTGTTCTCAGGTTCTTCATGTTCAAATAGGTTCAAATTCAATAACTGTTTAACTTTTAAATCACAGCTTCTCTATTCTTGCTAATTACTTCTTTTGAAAATGCACAGCATGATAGCTGGAATATGATTTTGTAAGCCCTATACTTGTGCTTCATTCCCCTGCCAAAAGTGTGTAGAAATTGGTACTTATAATTCAAAGACCGTCTTTGCGCAGGATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGTTGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTTTCTAGTTTACCAAAGGACTCAGATGCAAAATCATGTGGATCAGAATCTAGTGTAAAAGACAAAGTGGTTTCCGTGTTATCTGGTAAAGCTTCAGATTCTTCAGATCAAATGCGTAGTTCGAACATGGAGGTTTTTGTATCACAGTCTGATCTACAACGAGTAAGTTATACCATAAAGCGTGAGAAAGCTTTGGATAAGTTGCAACCAAGGCGGAACCCTGACACTAGTGCCCATGGGTTGACGTCTGATCAAGGAACGACTCTCCTCAAGGCACCTGAAAAACCATCAGAAGATGGATATAACTGGCGAAAATATGGTCAGAAGCTTGTGAAAGGAAATGAGTTTACTCGGAGTTATTACAAGTGCACATTCCCTAATTGTCTAGCAAAAAAGCAAGTGGAGAGATCACATGACGGACATATTACAGATATCCACTATATTGGGAAGCATGAGCATCCGGAAACTCTAAGTGTTCCCCAGATGTCCCCCGAGTATGTACTCCCTTTGCAAATGAAACGGCCAGACATTCCAATTATCACTGCATTAGAAGGTACCCGAGATAGCTGAGTGAATTTTGAGTTTCTTTGACCTACTTCCTTTACTAATTTTATAAGTGACATTTATCAGCTGAAGGTGAGAAATCTTCTACGCCCCGAGAAACATGTGAACCTAGTAAGCCACCAGAAGCCCCTCTAGCGTTGGCCATTGTATCAGCTTGTGATAGTGTGAAGGTTACGCCTTTGAAGC-GATATAAATTAGAAAATGAAGTCGATAAGGGTGATAGTGCAGACTCAAAAAAACAG</genome_strand>
        <mrna_strand>CTTGGTCCAAGTCAATGAACAGCTACCCTTTTTGAGTTTCTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGTTGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTTTCTAGTTTACCAAAGGACTCAGATGCAAAATCATGTGGATCAGAATCTAGTGTAAAAGACAAAGTGGTTTCCGTGTTATCTGGTAAAGCTTCAGATTCTTCAGATCAAATGCGTAGTTCGAACATGGAGGTTTTTGTATCACAGTCTGATCTACAACGAGTAAGTTATACCATAAAGCGTGAGAAAGCTTTGGATAAGTTGCAACCAAGGCGGAACCCTGACACTAGTGCCCATGGGTTGACGTCTGATCAAGGAACGACTCTCCTCAAGGCACCTGAAAAACCATCAGAAGATGGATATAACTGGCGAAAATATGGTCAGAAGCTTGTGAAAGGAAATGAGTTTACTCGGAGTTATTACAAGTGCACATTCCCTAATTGTCTAGCAAAAAAGCAAGTGGAGAGATCACATGACGGACATATTACAGATATCCACTATATTGGGAAGCATGAGCATCCGGAAACTCTAAGTGTTCCCCAGATGTCCCCCGAGTATGTACTCCCTTTGCAAATGAAACGGCCAGACATTCCAATTATCACTGCATTAGAAG.............................................................................CTGAAGGTGAGAAATCTTCTACGCCCCGAGAAACATGTGAACCTAGTAAGCCACCAGAAGCCCCTCTAGCGTTGGCCATTGTATCAGCTTGTGATAGTGTGAAGGTTACACCTTTGAAGCTGATATAAATTAGAAAATGAAGTCGATAAGGGTGATAGTGCAGACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343686" ref_strand="+" ref_description="SGN-U343686        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G26640.2 | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain | chr4:13437077-13440804 REVERSE | Aliases: None (evalue: 4e-18, score=88.6) genbank/nr: gi|16588566|gb|AAL26842.1| thermal hysteresis protein STHP-64 [Solanum dulcamara](evalue: 2e-70, score=268)">
      <seq>atccgaggagttactaccgatgctcggttgcaggttgccctgtgaagaagcatgtggagagggcatcccatgatccaaaattagtcattacaacatatgaaggacagcatgtccatgatttcccaacgtctaggcctataagccaaatttcagtagcacctgatgccggtacagcaggcatacgtgaagactccagaaccgaatcaggtgaaaagaaacatgtcgtggagtccaaaactgaatcaggtgaaatgaaacatatcagagagtcgaaaactgaagcaggtgaaaccaaacatgtcaaagagtccaaagccgaatcaggtgaaaacaaacatgttggagagtccaaaactgaatcagatggaaacaaacacgtcgaagagtccaaacctgaattggttggaaacaaacatgtcggagagtccatatctgaatcgggtgaaaacaaacatgttggtcttgacatggctgttcatattggtgcaaattgagtatcaaccatcttatgcaacaaaacaatcaacttatgcagaagtagagtttcttacaacaccagtcttccaatcttaccaaatttgttcaatcattctcttcctgaaggggagaaaagaaggttacatttcataggtacacttcttaacttgttattggcatggagnctgtgttatcatatattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="10875" stop="12158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11175" g_stop="11858" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U343686" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11175" e_stop="11858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTAGGAGTTACTACCGATGCTCGGTTGCAGGTTGCCCTGTGAAGAAGCATGTGGAGAGGGCATCCCATGATCCAAAATTAGTCATTACAACATATGAAGGACAGCATGTCCATGATTTCCCAACGTCTAGGCCTATAAGCCAAATTTCAGTAGCACCTGATGCCGGTACAGCAGGCATACGTGAAGACTCCAGAACCGAATCAGGTGAAAAGAAACATGTCGTGGAGTCCAAAACTGAATCAGGTGAAATGAAACATATCAGAGAGTCGAAAACTGAAGCAGGTGAAACCAAACATGTCAAAGAGTCCAAAGCCGAATCAGGTGAAAACAAACATGTTGGAGAGTCCAAAACTGAATCAGATGGAAACAAACACGTCGAAGAGTCCAAACCTGAATTGGTTGGAAACAAACATGTCGGAGAGTCCATATCTGAATCGGGTGAAAACAAACATGTTGGTCTTGACATGGCTGTTCATATTGGTGCAAATTGAGTATCAACCATCTTATGCAACAAAACAATCAACTTATGCAGAAGTAGAGTTTCTTACAACACCAGTCTTCCAATCTTACCAAATTTGTTCAATCATTCTCTTCCTGAAGGGGAGAAAAGAAGGTTACATTTCATAGGTACACTTCTTAACTTGTTATTGGCAATGGAG-CTGTGTTATCATATATTCACT</genome_strand>
        <mrna_strand>ATCCG-AGGAGTTACTACCGATGCTCGGTTGCAGGTTGCCCTGTGAAGAAGCATGTGGAGAGGGCATCCCATGATCCAAAATTAGTCATTACAACATATGAAGGACAGCATGTCCATGATTTCCCAACGTCTAGGCCTATAAGCCAAATTTCAGTAGCACCTGATGCCGGTACAGCAGGCATACGTGAAGACTCCAGAACCGAATCAGGTGAAAAGAAACATGTCGTGGAGTCCAAAACTGAATCAGGTGAAATGAAACATATCAGAGAGTCGAAAACTGAAGCAGGTGAAACCAAACATGTCAAAGAGTCCAAAGCCGAATCAGGTGAAAACAAACATGTTGGAGAGTCCAAAACTGAATCAGATGGAAACAAACACGTCGAAGAGTCCAAACCTGAATTGGTTGGAAACAAACATGTCGGAGAGTCCATATCTGAATCGGGTGAAAACAAACATGTTGGTCTTGACATGGCTGTTCATATTGGTGCAAATTGAGTATCAACCATCTTATGCAACAAAACAATCAACTTATGCAGAAGTAGAGTTTCTTACAACACCAGTCTTCCAATCTTACCAAATTTGTTCAATCATTCTCTTCCTGAAGGGGAGAAAAGAAGGTTACATTTCATAGGTACACTTCTTAACTTGTTATTGGC-ATGGAGNCTGTGTTATCATATATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319560" ref_strand="+" ref_description="SGN-U319560        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:2476455-2478219 FORWARD | Aliases: MLP3.21(evalue: 2e-61, score=232) genbank/nr: expressed(evalue: 5e-61, score=237)">
      <seq>aaattagctgaatttttttcattcttctctcttagctttccccaaaaaaaaatatgtagaaaaattcaaaaaccctaaatcaatacaatttgattattattattacaaggtgaactcaattttagttgtattttgattgtgagagatgatagtaagcaaagaaaaaccaccagaaccactggatttcttcatttggacagttgaggatgtaggtttatggttagaagaaataaagcttggtagctatcgtcaaattttcaaagaaaatggtgttaatggagaatatttggaggggatgtccatgttcacgacggaacagattcttcggtttataagaaggtgccacatgaaatggggagacttcattacattgtgcaaggagctgaggcggataaaagtggcttgcttgaagggagaacaaagagtccggcgaccatggtgggccccgtcttgtatctccgtagtgtttatgaagacggccaagcgtaacaggcagtgtagagtggtttcactgaagctggaaccttagacactaattacgccatctttgcgcatcattagttataatatgtccagagaagtgaaaaatcgatccccgtcagttattttccttgtaatccccctcttctgcccaagcttttatgtatacataaggttgtagtctttacatttttagtttgtgatgtttatagtatcaaatcaagaaaatagatgacttttatgtaaatttcaatgtgtaatgtgtgaatagtttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="14009" stop="86619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14309" g_stop="14417" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14418" i_stop="14494" i_length="77">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14495" g_stop="14590" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="205" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14591" i_stop="18119" i_length="3529">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18120" g_stop="18312" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="398" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18313" i_stop="18999" i_length="687">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19000" g_stop="19375" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="774" r_length="376" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U319560" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14309" e_stop="14417"/>
          <exon e_start="14495" e_stop="14590"/>
          <exon e_start="18120" e_stop="18312"/>
          <exon e_start="19000" e_stop="19375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAGCTGAAATTTTTTCATTCTTCTCTCTTAGCTTTCCCCAAAAAAAAATATGTAGAAAAATTCAAAAACCCTAAATCAATACAATTTGATTATTATTATTACAAGGTATGTAATTGATTTGTATTTGTTATTAATTGTTTTCTATGAAATTATTATAATCTCATTTTTTTAAGTGTGTTTAGGTGAACTCAATTTTAGTTGTATTTTGATTGTGAGAGATGATAGTAAGCAAAGAAAAACCACCAGAACCACTGGATTTCTTCATTTGGACAGTTGAGGTATTTTTTTTAAAAAATTTTGGTTGAGTTTTTGATTATTTGATTAGTTTTGTAGATCTTGTGAGTTTACTGTTATTTGATTACTTTTGGAGGTTGAGGATTTAGGTGTATGTTGTTCGGATTTTTCAAAAATGTTCGCCGGTTAGTAATTTTAGAGTATTTGATAAGGGTGCGACATTGAAAGTAAAGAGTCGATTAAGGTAGAAGAAGGTTAGTAGGTAGTCTGAGTGTTGTCTCCCTGCATTTTTAGTTGAATGAATACTAATCTTATAGGTTTTTGTCTTTTGATTTTTGTTAACGCTGCAGAAGTCAGTTGATTTTTTCGATCGATTTTGATTGGGGGCTTCTGATAAAAAATGAATTTAATAGGGGATGGAACTGTAGTCTATTACGCAATGATGACCAGAGCTCAAAGGTTGCTAGATGTAGGCCTCACAAGATTATTAACCGGTTGTTGAATTCTCCAACCTTAGTTATCGATCTTGGGTCTCTCCTATTTATTTTCTCTCCTTACTTGATATTAGAGTCATAGCCATAGGTTGGCTTTTGAAAATTTTGATTCAAGATTGGGCGAGTGGTAGTAGATTTTACTCATATCTCGTGTTGATAGACTAAGATAGAATTATTAAGGTATGGGGCACATGTATGGTATCCTATCTTGTTAGCAAGGATTTGTAAGAGATTGTTAATGTGTAACACAAGTCCTCCTAATGAATTGAGAATAGAAACACAGTCAAGAAGTGGAAAGTTGAGGCCAAGTTCATCCTAAAGAGGTCTATTTTCGATAAATTATTTGATCATATAATAAGTTGTAGATCATCTCATAAAATATGAAGGACCCTCGATTGGTTGTTCAACAAGAATGAAACTCGACCATAAGTATTGGAGAATGCTACTAGCCAGGTAAAGGGCTGGTGTATCTATCAAAGAAGGGGAAAGAAATGCTCTTGTAGTCTATAAGGGAATTTAAAAGGTAGGTACAAACAAAGTTGCTCTAGAGAGGAGACACATTCTCAATTCCAAGATGGTTCAAGCTCGTCAAGAAAGAGTTTTGCTTTCCTTTACACGCAAACAATAGTAGACAATAATAAATTAGAGACTTTCTACTAGCCCAAGTTCGATAATTAAGGTTGGAGGACTCAACTAAAAAGGCCACTTTGAAAGAGAAAGATGATTTTAGATAGTAAATCATGGATGTGCTACAAAGCTTTTTGGAAATTGACTGAGTTACAAAAGCACAAGAGGACTCCTACTTATACTTGTCTAGAGATGGTTCTAGATATTGTCTAGATATATCTATAAGAAGGGTCTATTTGACCTTATCTTCTTGCGTGATTCTAGAAGATGTAGATATTTCTTCAAGATATTACACTAGGTCATTGTAGAAACCTTATTAAAAATCCATGATATTCCAGAAGATCAACTTTAATTGTTTCACACTCATCCTTTAAGTGATTTTTTGGAAATTACTCTAAGCTTGACGATGAAGAACCCAAGCGAAGCTTTAGGAAGTATCTTGGTGAACATATCATCAATATTTTCTTGACATCGCACTTCTAAAGTTTTTATAGTTCCATCAAGAATTTTTGTCGGATGAAATGATGTTCCACCTCAATGTGCTTAGTTCTTGCATGGAATATAGGATAATTTGCAAGCTTGATGACACTTTGATTGTCTCCATAAACTTCCTTTGGCTTTCATATAGATAACTCTTTGGAGCCATACACATTCTTGATTCTTGAGTACCGACAATGGCTTTTTTATGATCCACCTCCGTAATTGATAAATAAGTCGAGTCCTGCTTTTTGTTGCACCAAGAAATACCTGTTCCTCCAAGAGTAAAATATAGTTTGATATAGATTTTCAATCATCCAAATCGCCACCAAAATCAGCATCAGTATTACCCGTTCTACATGCTACATGCTACAGCATCAGAAATACCTGACTTTTAATAAATGGCATGTTCCATCTTTATGTTGTTGTTGTGGTGAATTGATATTCTACATGCTGCTTCAATGTTTTTGTCACGACTTTTCATAACAAATCCATTTGATAGTTTCACCAGAATAAGACTAAGAAACTTAGTATTGATCAATTAGTTTCTAGTAGAGGGAGGAAGAGACAAAAATTTGTGGTTATGATGGAGAAATTGAAAAAGAACACTTAAACATAATTTGACATAACAGGGCCATATTGGAGAGACGAAGTGATGAATTTTCTCCCGGAAGACTAACTAAATCATAAAATGAGTTTTTTTCCTCCTTTCTTCTTTCTTCCCCTCTAGTTTTGGGGTGGGTGGGTGGTGGGGTTAAGCGTTGTTCATGCACAAGCTTAGCACTTCGTTTTGACTCCCTTTCCACCTTCCTCGGAGTCAAACTCTATTTCAGCAGTTCCTTGTTCTGAAACTCATGATCTATTGTTGCGTCCTTCAATCAATCATATCTTTGCCTCGGGTCTTGAAAGCAATTTCATCTGGAAAGAGGAAGAGGTTCTATAGAGGGAATATCAACGGAAGTCTATCTGCTCTGCATGTGTGCATTATGCTTTCATCCCGTAGAAAAAGTTTTTTTCTTTTGCACTATTTTTTTGTTTCATTTTGTTTAGCAAAGAACTGCTCAACTAACTTTCTTGTCTATGCAAAAAGGTGTCATACTTGAGAATTTTGTCATTCTAAAATAGAAGTAAAAAATTGATTGTTTATTTTGTCGACTCCGCCTATAAGAGCGATTAAGTCCTTTTAGTTCACTCTGTCACTTTTCTTGTTTTGAAACTGGTACTTTTAAAATGACACTGTGTCTCTTCTGGACAACTATATGGCCGGTTTGCTATGCAGTTATTTGGTACTGCTTGGTCATCCATGATCTAAACGTGTCAATTTTGAGGATTAGGCATCATGCATGGTTAGATGGAAACAACAAGTTGAGGTGTAAGGTTTAAAACATTCAATTACTGTTTATATGTAATTTTGAATCTTGAAAATTGTCATCAGCAAGTAATCATATCTGAATTGTACATAAATGCCTCTCTGTCCTACTACTGTGTAGGATAACAATATATCTATATTGTGTATAGACTAATGAGTTGGAAGTTATATGGATGACATTTTAGTTAGATATTTTGCCAAAATAGTAGCGGAGTCAAATCCGTAGACATGTGTGATATGCCTAGGTTAATGTAAAACCATGATGCGGGGCTAGGTCCGAGTTGAGGAACAGAGTGACTTATTTATGGGAGCATCTGTTCCTTGTGTTCTTCAAAAGTCAAAACCTAAAAGAAATAGTGAATGGATAATATTTTGAATAATTTGAGCTCATGTAATTAAGAGGTGAAACGATTTATTTAGTAGGTTTAGATAACTTGCTTGCGATGAGGTCCCTCCTTCTGTCAAGTTTTTGTATGATAAGTTGACATACTGATTCACTATTTCAAAGAGGTCGATATTCTTTTTTTTATTCTTTGGCATGATAAAATACGTCCACGAGGGAATGCAAAAATGACTGACATTCTGTTACTGCTCTTGTTTTGCCAGGATGTAGGTTTATGGTTAGAAGAAATAAAGCTTGGTAGCTATCGTCAAATTTTCAAAGAAAATGGTGTTAATGGAGAATATTTGGAGGGGATGTCCATGTTCACGACGGAACAGATTCTTCGGTTTATAAGAAGGTGCCACATGAAATGGGGAGACTTCATTACATTGTGCAAGGAGCTGAGGCGGATAAAAGGTTCCTATAATCTCTCTCTTGGCTCACAGATGAAACCATATCTTCTGTTAGTTTGACAACTTTCTTTGTCCATCTTTCCAGCAATACAATTACGTTTTGTTATGTTGTTTTTAATCAGCTTTGAGTGGCGACACACTTGTGTTTTCTTTGTCATGTGAAAAGACCTTTTGCAAAACTTGAAGTTGGGACTTGTACACTTGCCAATATGGTGTGATGGTTCCATTGCGCTGCTTCTACCTAGTTAGTTATATGTGTTCTGTTTTGAATTCATCGGATTCTGCAGACATATTTTGTGATCTGGTTTTGATCGTAACGTCAAGTACTACTGACAATAAAACTCTCTACCGTAGTAAATCTTAACAGATTTATAAATATACTTCTATTTTTTGAGATAATTGTTAAAGTTGTTGCCGTGTGACTAGTAGGTCACGGGTTCGACATGTGAAAACAACCTTGCAGAGATGCTGGGTAAGGCTATGTATAATAGATCGTTGTGGTATGGACCTTCCCCGAACCCCAAGCATAGCAGGAGCTTTGTGCACCGGGCAGCCATTATCACGGAAAGCTATTAAAATATTTTCGTGAATCTGCTGTTGCTATTTAGGAATGAAGTTATCGCTATTCTTTTACTATTTGCTAATTTGCTATAGTTCCTTTTATCTATATTGACTCAATTTATGTCTTCAGTGGCTTGCTTGAAGGGAGAACAAAGAGTCCGGCGACCATGGTGGGCCCCGTCTTGTATCTCCGTAGTGTTTATGAAGACGGCCAAGCGTAACAGGCAGTGTAGAGTGGTTTCACTGAAGCTGGAACCTTAGACACTAATTACGCCATCTTTGCGCATCATTAGTTATAATATGTCCAGAGAAGTGAAAAATCGATCCCCGTCAGTTATTTTCCTTGTAATCCCCCTCTTCTGCCCAAGCTTTTATGTATACATAAGGTTGTAGTCTTTACATTTTTAGTTTGTGATGTTTATAGTATCAAATCAAGAAAATAGATGACTTTTATGTAAATTTCAATGTGTAATGTGTGAATAGTTTCTAAACTTGAATTGTAAGCC</genome_strand>
        <mrna_strand>AAATTAGCTGAATTTTTTTCATTCTTCTCTCTTAGCTTTCCCCAAAAAAAAATATGTAGAAAAATTCAAAAACCCTAAATCAATACAATTTGATTATTATTATTACAAG.............................................................................GTGAACTCAATTTTAGTTGTATTTTGATTGTGAGAGATGATAGTAAGCAAAGAAAAACCACCAGAACCACTGGATTTCTTCATTTGGACAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAGGTTTATGGTTAGAAGAAATAAAGCTTGGTAGCTATCGTCAAATTTTCAAAGAAAATGGTGTTAATGGAGAATATTTGGAGGGGATGTCCATGTTCACGACGGAACAGATTCTTCGGTTTATAAGAAGGTGCCACATGAAATGGGGAGACTTCATTACATTGTGCAAGGAGCTGAGGCGGATAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGCTTGAAGGGAGAACAAAGAGTCCGGCGACCATGGTGGGCCCCGTCTTGTATCTCCGTAGTGTTTATGAAGACGGCCAAGCGTAACAGGCAGTGTAGAGTGGTTTCACTGAAGCTGGAACCTTAGACACTAATTACGCCATCTTTGCGCATCATTAGTTATAATATGTCCAGAGAAGTGAAAAATCGATCCCCGTCAGTTATTTTCCTTGTAATCCCCCTCTTCTGCCCAAGCTTTTATGTATACATAAGGTTGTAGTCTTTACATTTTTAGTTTGTGATGTTTATAGTATCAAATCAAGAAAATAGATGACTTTTATGTAAATTTCAATGTGTAATGTGTGAATAGTTTCTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312438" ref_strand="+" ref_description="SGN-U312438        Tomato 200607 #1 [57 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504: Chlorophyll A-B binding protein | chr3:10257184-10258248 FORWARD | Aliases: MGF10.10(evalue: 1e-139, score=492) genbank/nr: gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum](evalue: 4e-152, score=540)">
      <seq>aaaaaaaaataaaaaaatggctacttctgcaattcaacattctgcatttgctggccaaacagcacttaagtcacaaaatgaatttattaggaaaattggtagctttgaaggtggacgtgtcaccatgcgacgtactgtcaaaagtgcaccacaaagcatatggtatggagaagataggccaaagtacttgggaccattttctgagcaaacaccatcatacttgactggtgagtttccaggtgactatggatgggacactgctggactctcagctgaccctgagacatttgcaaggaaccgtgagcttgaggtgatacattgtcgttgggctatgcttggtgctttggggtgtgttttccctgaaatattgtctaagaatggtgttacatttggtgaagctgtttggttcaaggctggatctcaaattttctccgaaggcggtcttgactaccttggtaacccaaaccttatccatgctcagagcatacttgccatttgggcatcacaagttgtgttaatgggctttgttgaaggatatagagttggtggaggtccattaggtgaaggcctcgacaagatctacccggggggtgctttcgacccactgggccttgctgatgatccggaggcatttgctgagttgaaggtcaaggaaatcaagaatggacgattagctatgttctcaatgtttggtttctttgttcaagctattgttactggaaaaggtccaattgagaacctttccgaccacattgctgatccagttgccaacaatgcttgggcttacgccacaaactttgtacccggaaaatgaacttagtacactcttttatctgtaaaaattgtgaagctactgcatgtcttttatgtaatcatatatatgcaaaagccaagactacataatcttcaaatttaaaaaaaaaaatcatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="29740" stop="86619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30039" g_stop="30200" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30201" i_stop="30768" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30769" g_stop="31543" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="937" r_length="775" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31544" i_stop="32037" i_length="494">
            <donor d_prob="0.784" d_score="0.78"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32038" g_stop="32049" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="949" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U312438" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30039" e_stop="30200"/>
          <exon e_start="30769" e_stop="31543"/>
          <exon e_start="32038" e_stop="32049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAATAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATGGTAATTTTTTTAATTTATCATTTACTATATTTTCAATCATATTATTGTTAATTTTTAATGAATTATTCATTGTTCATTTAGTCATATTATTATTTCCATATTTTTAAATAAAAATGGAAAAACAATGCAAAACCTTGAAATAATCATGTCAACTACTATTTTGTGACATAGAAATATAATGTCTTTAGTGTTGATTATAGGCATAATAAATACGTGTATCCTTTAATTTGGTCTCATTTCATGTTTATGTCCTTTAACTTTGGGTCTGCAGTAATAGTAGATACTTAAACTTGTATAAACTTGAACAAGTAGATACATGAGTCCTACGCGTTGGACAAAAAATGCCATGCAGCACATGTGTGTCTATTTGTTCAAGTTTATACAAGTTTAAGTATCTACTATTGCTCACGCAAAGTTAAACGACATAAATGTGATTTGAAGTCAAGTTAAAGACAGTCTGGTGCACTAAATTGTCAGTACTATAGTAATAAAGGGTTAGACGACCATATTAAGTCTATTAGTGCACAACTACTATTCTTGACCTCCTGCTCACATGACGATCGAATAGGTATGGAGAAGATAGGCCAAAGTACTTGGGACCATTTTCTGAGCAAACACCATCATACTTGACTGGTGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGACTCTCAGCTGACCCTGAGACATTTGCAAGGAACCGTGAGCTTGAGGTGATACATTGTCGTTGGGCTATGCTTGGTGCTTTGGGGTGTGTTTTCCCTGAAATATTGTCTAAGAATGGTGTTACATTTGGTGAAGCTGTTTGGTTCAAGGCTGGATCTCAAATTTTCTCCGAAGGCGGTCTTGACTACCTTGGTAACCCAAACCTTATCCATGCTCAGAGCATACTTGCCATTTGGGCATCACAAGTTGTGTTAATGGGCTTTGTTGAAGGATATAGAGTTGGTGGAGGTCCATTAGGTGAAGGCCTCGACAAGATCTACCCGGGGGGTGCTTTCGACCCACTGGGCCTTGCTGATGATCCGGAGGCATTTGCTGAGTTGAAGGTCAAGGAAATCAAGAATGGACGATTAGCTATGTTCTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAAGGTCCAATTGAGAACCTTTCCGACCACATTGCTGATCCAGTTGCCAACAATGCTTGGGCTTACGCCACAAACTTTGTACCCGGAAAATGAACTTAGTACACTCTTTTATCTGTAAAAATTGTGAAGCTACTGCATGTCTTTTATGTAATCATATATATGCAAAAGCCAAGACTACATAATCTTCAAATTTAATCACTCTGCTCATTTCAATTCGTTTGTTTTACTTAAACTTTTCTTTTTAGTTCGTTTCCAAAAGAATTTACATAATCGTGTCACTTATAAGGTAACTATATACGTAAATAAGCATTACTTGGGAACCTGGAAGAAATGGTAACGAATTTGCTGTAACAGGTTAACTACACTGATATGATCGTGTATAAAAAAGTATCGCGTGTGTACTATAGATGGAGAGAAGTATCAATATCAGAATTTTCATATTTACATTTAGCTGTCAACGCACGCCACAAAGGTTGAGTCTTTCTGACTTGGTAGCTTCTGTGTTTGTTATTCAAACTGAGTTCAAGAAAGAACTTATCTTGATCAGAATCGATCATTTCTGATCGAAGAATCAGTTCGTGTGTGAATTCTGGCTTGACAGATGCATGATTCTTGATTTGTGTCATCAGTTGAGGCTGTGAGAACAATTTACTTGTTCTGTTTTTTCTCTGCTTTTTTGCTTTTTCCAATTGTCTGAATCTTTGTTGCAGCAGAACAATTGA</genome_strand>
        <mrna_strand>AAAAAAAAATAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGAGAAGATAGGCCAAAGTACTTGGGACCATTTTCTGAGCAAACACCATCATACTTGACTGGTGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGACTCTCAGCTGACCCTGAGACATTTGCAAGGAACCGTGAGCTTGAGGTGATACATTGTCGTTGGGCTATGCTTGGTGCTTTGGGGTGTGTTTTCCCTGAAATATTGTCTAAGAATGGTGTTACATTTGGTGAAGCTGTTTGGTTCAAGGCTGGATCTCAAATTTTCTCCGAAGGCGGTCTTGACTACCTTGGTAACCCAAACCTTATCCATGCTCAGAGCATACTTGCCATTTGGGCATCACAAGTTGTGTTAATGGGCTTTGTTGAAGGATATAGAGTTGGTGGAGGTCCATTAGGTGAAGGCCTCGACAAGATCTACCCGGGGGGTGCTTTCGACCCACTGGGCCTTGCTGATGATCCGGAGGCATTTGCTGAGTTGAAGGTCAAGGAAATCAAGAATGGACGATTAGCTATGTTCTCAATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAAGGTCCAATTGAGAACCTTTCCGACCACATTGCTGATCCAGTTGCCAACAATGCTTGGGCTTACGCCACAAACTTTGTACCCGGAAAATGAACTTAGTACACTCTTTTATCTGTAAAAATTGTGAAGCTACTGCATGTCTTTTATGTAATCATATATATGCAAAAGCCAAGACTACATAATCTTCAAATTTAAAAAAAAAAATCATTTCAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333562" ref_strand="+" ref_description="SGN-U333562        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type II (LHCB2.1) (LHCB2.3), identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741948, GI:4741944; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr2:1823237-1824389 REVERSE | Aliases: F15L11.2, F15L11_2(evalue: 7e-13, score=72) genbank/nr: gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum](evalue: 2e-16, score=90.1)">
      <seq>aaaaaaaaaatggctacttctgcaattcaacattctgcatttgctggccaaacagcacttaagtcacaaaatgaatttattaggaaaattggtagctttgaaggtggacgtgtcaccatgcgacgtactgtcaaaagtgcaccacaaagcatatggtaattttttaaatttatcatttactatattttcaatcatattattgttaatttttaatgaattattcattgttcatttagtcatattattatttccatttttaaataaaaatggaaaaacaacgcaaaaccttgaaataatcatgtcaaatactattttgtgacataaaaatataatgtctttagtgttgattataggcataataaatacgtgtatcctttaatttggcctcatttcatgtttatgtcctttaagtatctactattgctcacccaaagttaaacgacataaatgtgatttgaagtcaagttaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="29746" stop="30954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30046" g_stop="30452" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30453" i_stop="30586" i_length="134">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30587" g_stop="30654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="473" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U333562" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30046" e_stop="30452"/>
          <exon e_start="30587" e_stop="30654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATGGTAATTTTTTTAATTTATCATTTACTATATTTTCAATCATATTATTGTTAATTTTTAATGAATTATTCATTGTTCATTTAGTCATATTATTATTTCCATATTTTTAAATAAAAATGGAAAAACAATGCAAAACCTTGAAATAATCATGTCAACTACTATTTTGTGACATAGAAATATAATGTCTTTAGTGTTGATTATAGGCATAATAAATACGTGTATCCTTTAATTTGGTCTCATTTCATGTTTATGTCCTTTAACTTTGGGTCTGCAGTAATAGTAGATACTTAAACTTGTATAAACTTGAACAAGTAGATACATGAGTCCTACGCGTTGGACAAAAAATGCCATGCAGCACATGTGTGTCTATTTGTTCAAGTTTATACAAGTTTAAGTATCTACTATTGCTCACGCAAAGTTAAACGACATAAATGTGATTTGAAGTCAAGTTAAAGAC</genome_strand>
        <mrna_strand>AAAAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATGGTAATTTTTTAAATTTATCATTTACTATATTTTCAATCATATTATTGTTAATTTTTAATGAATTATTCATTGTTCATTTAGTCATATTATTATTTCC--ATTTTTAAATAAAAATGGAAAAACAACGCAAAACCTTGAAATAATCATGTCAAATACTATTTTGTGACATAAAAATATAATGTCTTTAGTGTTGATTATAGGCATAATAAATACGTGTATCCTTTAATTTGGCCTCATTTCATGTTTATGTCC......................................................................................................................................TTTAAGTATCTACTATTGCTCACCCAAAGTTAAACGACATAAATGTGATTTGAAGTCAAGTTAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333561" ref_strand="+" ref_description="SGN-U333561        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504: Chlorophyll A-B binding protein | chr3:10257184-10258248 FORWARD | Aliases: MGF10.10(evalue: 4e-26, score=114) genbank/nr: gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum](evalue: 5e-26, score=120)">
      <seq>gcacgaggctgatgatccggaggcatttgctgagttgaaggtcaaggaaatcgagaacatagctaatcgtccattcttgatgtttggtttctttgttcaagctattgttactggaaaaggtccaattgagaacctttccgaccacattgctgatccagttgccaacaatgcttgggcttacgccacaaactttgtacccggaaaatgaacttagtacactcttttatctgtaaaaattgtgaagctactgcatgtcttttatgtaatcatatatatgcaaaagccaagactacataatcttcaaatttaatcactctgctcatttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="30920" stop="86619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31213" g_stop="31543" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31544" i_stop="32037" i_length="494">
            <donor d_prob="0.784" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32038" g_stop="32051" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="345" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U333561" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31213" e_stop="31543"/>
          <exon e_start="32038" e_stop="32051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCTTGCTGATGATCCGGAGGCATTTGCTGAGTTGAAGGTCAAGGAAATCAAGAATGGA-CGATTAGCTATGTTCTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAAGGTCCAATTGAGAACCTTTCCGACCACATTGCTGATCCAGTTGCCAACAATGCTTGGGCTTACGCCACAAACTTTGTACCCGGAAAATGAACTTAGTACACTCTTTTATCTGTAAAAATTGTGAAGCTACTGCATGTCTTTTATGTAATCATATATATGCAAAAGCCAAGACTACATAATCTTCAAATTTAATCACTCTGCTCATTTCAATTCGTTTGTTTTACTTAAACTTTTCTTTTTAGTTCGTTTCCAAAAGAATTTACATAATCGTGTCACTTATAAGGTAACTATATACGTAAATAAGCATTACTTGGGAACCTGGAAGAAATGGTAACGAATTTGCTGTAACAGGTTAACTACACTGATATGATCGTGTATAAAAAAGTATCGCGTGTGTACTATAGATGGAGAGAAGTATCAATATCAGAATTTTCATATTTACATTTAGCTGTCAACGCACGCCACAAAGGTTGAGTCTTTCTGACTTGGTAGCTTCTGTGTTTGTTATTCAAACTGAGTTCAAGAAAGAACTTATCTTGATCAGAATCGATCATTTCTGATCGAAGAATCAGTTCGTGTGTGAATTCTGGCTTGACAGATGCATGATTCTTGATTTGTGTCATCAGTTGAGGCTGTGAGAACAATTTACTTGTTCTGTTTTTTCTCTGCTTTTTTGCTTTTTCCAATTGTCTGAATCTTTGTTGCAGCAGAACAATTGAAG</genome_strand>
        <mrna_strand>GCACGAGGCTGATGATCCGGAGGCATTTGCTGAGTTGAAGGTCAAGGAAATCGAGAACATAGCTAATCG-TCCATTCTTGATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAAGGTCCAATTGAGAACCTTTCCGACCACATTGCTGATCCAGTTGCCAACAATGCTTGGGCTTACGCCACAAACTTTGTACCCGGAAAATGAACTTAGTACACTCTTTTATCTGTAAAAATTGTGAAGCTACTGCATGTCTTTTATGTAATCATATATATGCAAAAGCCAAGACTACATAATCTTCAAATTTAATCACTCTGCTCATTTCAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341580" ref_strand="+" ref_description="SGN-U341580        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G14540.1 | Symbol: None | CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family, contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone; similar to LEC1-like protein (GI:22536010) (Phaseolus coccineus) | chr4:8344612-8345214 FORWARD | Aliases: DL3310W, FCAALL.252 (evalue: 8e-55, score=211) genbank/nr: gi|15233475|ref|NP_193190.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|7443520|pir||G71407 transcription factor, CCAAT-binding, chain A - Arabidopsis thaliana gi|2244810|emb|CAB10233.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|7268160|emb|CAB78496.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|26450702|dbj|BAC42460.1| putative CCAAT-binding transcription factor subunit A CBF-A [Arabidopsis thaliana] gi|28372860|gb|AAO39912.1| At4g14540 [Arabidopsis thaliana](evalue: 6e-53, score=211)">
      <seq>cttttctctctcatctctctctccccggccggaaaatatttcccggcgaacgtttctccctaatttttgtctgtcggtttttgttccatctgtttgtatacaatttgtatttttctcgccggagaatctacttcccccttttaaattctcgccggaaaatccaaacccagttaacatttccggtacggtgataaaggttttttttttcgtttttgttgttttagcagttttttctggagtaccgtttttttgaatttggagaatttggggattggcgatggctgattcaaacaacgaatcaggaggtcacaataacgcgaacagtgaaggatcaacaagggaacaagacaggttccttccgatagcaaacgtgagcagaattatgaagaaagctttaccggcgaacgcgaaaatttcgaaggatgctaaggaaacagttcaagagtgtgtatcggaatttatcagtttcattaccggagaagcatcggacaagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggctatgacaactttaggattcgaaaagtatgttgagccattgaagatttacttggccaagtacagagaaatggaaggggaaaaaactactatgggtcgtacaggggagaaagatgggggtggtggaaatacggcgggaggtggtggtggtggtgttatttctgggggtgggtataacggtggtggtggcggtatgtatggtggtatgggtggttccatgatgtatcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="40875" stop="42248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41175" g_stop="41948" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U341580" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41175" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCTCATCTCTCTCTCTCCCCGGCCGGAAAATATTTCCCGGCGAACGTTTCTCCCTAATTTTGGTCTGTCGGTTTTTGTTCCATCTGTTTGTATACAATTTGTATTTTTCTCGCCGGAGAATCTACTTCCCCCTTTTAAATTCTCGCCGGAAAATCCAAACCCAGTTAACATTTCCGGTACGGTGATAAAGGTTTTTTTTTTCGTTTTTGTTGTTTTAGCAGTTTTTTCTGGAGTACCGTTTTTTTGAATTTGGAGAATTTGGGGATTGGCGATGGCTGATTCAGACAACGAATCAGGAGGTCACAATAACGCGAACAGTGAAGGATCAACAAGGGAACAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGAATTATGAAGAAAGCTTTACCGGCGAACGCGAAAATTTCGAAGGATGCTAAGGAAACAGTTCAAGAGTGTGTATCGGAATTTATCAGTTTCATTACCGGAGAAGCATCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCTATGACAACTTTAGGATTCGAAGAGTATGTTGAGCCATTGAAGATTTACTTGGCCAAGTACAGAGAAATGGAAGGGGAAAAAACTACTATGGGTCGTACAGGGGAGAAAGATGGGGGTGGTGGAGATACGGCGGGAGGTGGTGGTGGTGGTGTTAGTTCTGGGGGTGGGTATAACGGTGGTGGCGGCGGCATGTATGGTGGTATGGGTGGTTCCATGATGTATCATCCT</genome_strand>
        <mrna_strand>CTTTTCTCTCTCATCTC--TCTCTCCCCGGCCGGAAAATATTTCCCGGCGAACGTTTCTCCCTAATTTTTGTCTGTCGGTTTTTGTTCCATCTGTTTGTATACAATTTGTATTTTTCTCGCCGGAGAATCTACTTCCCCCTTTTAAATTCTCGCCGGAAAATCCAAACCCAGTTAACATTTCCGGTACGGTGATAAAGGTTTTTTTTTTCGTTTTTGTTGTTTTAGCAGTTTTTTCTGGAGTACCGTTTTTTTGAATTTGGAGAATTTGGGGATTGGCGATGGCTGATTCAAACAACGAATCAGGAGGTCACAATAACGCGAACAGTGAAGGATCAACAAGGGAACAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGAATTATGAAGAAAGCTTTACCGGCGAACGCGAAAATTTCGAAGGATGCTAAGGAAACAGTTCAAGAGTGTGTATCGGAATTTATCAGTTTCATTACCGGAGAAGCATCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCTATGACAACTTTAGGATTCGAAAAGTATGTTGAGCCATTGAAGATTTACTTGGCCAAGTACAGAGAAATGGAAGGGGAAAAAACTACTATGGGTCGTACAGGGGAGAAAGATGGGGGTGGTGGAAATACGGCGGGAGGTGGTGGTGGTGGTGTTATTTCTGGGGGTGGGTATAACGGTGGTGGTGGCGGTATGTATGGTGGTATGGGTGGTTCCATGATGTATCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341002" ref_strand="+" ref_description="SGN-U341002        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttagttctgggggtgggtataacggtggtggcggcggcatgtatggtggtatgggtggttccatgatgtatcatcctcaaggtggtcatcaaatgtatggtagtcatgggtcatataatcatatgggtatgggtggcggcggcggtggcggtggttccggtgccggaggttccggtcaagggcggagatagattctataaacttcaaattttgaatcgataacgagccaaagtaggtggtagtggaagtttcagaatataataaacatcaaaattctgaatagataatggaccaaaaagtatacggtaattgaggaggtggaggtttcagaatattataaactttaaattctgacttaacaatgagccaaagtaacgatgattgtgatggtggatttatattatgaactttaaatcctggcttaagcaactatgattgtaacgatgaaacaatgattatgatggtgaaattatattataagctttaaattctgactttgcgattcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="41572" stop="42679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41872" g_stop="42379" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U341002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41872" e_stop="42379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTCTGGGGGTGGGTATAACGGTGGTGGCGGCGGCATGTATGGTGGTATGGGTGGTTCCATGATGTATCATCCTCAAGGTGGTCATCAAATGTATGGTAGTCATGGGTCATATAATCATATGGGTATGGGTGGCGGCGGCGGTGGCGGTGGTTCCGGTGCCGGAGGTTCCGGTCAAGGGCGGAGATAGATTCTATAAACTTCAAATTTTGAATCGATAACGAGCCAAAGTAGGTGGTAGTGGAAGTTTCAGAATATAATAAACATCAAAATTCTGAATAGATAATGGACCAAAAAGTATACGGTAATTGAGGAGGTGGAGGTTTCAGAATATTATAAACTTTAAATTCTGACTTAACAATGAGCCAAAGTAACGATGATTGTGATGGTGGATTTATATTATGAACTTTAAATCCTGGCTTAAGCAACTATGATTGTAACGATGAAACAATGATTATGATGGTGAAATTATATTATAAGCTTTAAATTCTGACTTTGCGATTCGAT</genome_strand>
        <mrna_strand>TTAGTTCTGGGGGTGGGTATAACGGTGGTGGCGGCGGCATGTATGGTGGTATGGGTGGTTCCATGATGTATCATCCTCAAGGTGGTCATCAAATGTATGGTAGTCATGGGTCATATAATCATATGGGTATGGGTGGCGGCGGCGGTGGCGGTGGTTCCGGTGCCGGAGGTTCCGGTCAAGGGCGGAGATAGATTCTATAAACTTCAAATTTTGAATCGATAACGAGCCAAAGTAGGTGGTAGTGGAAGTTTCAGAATATAATAAACATCAAAATTCTGAATAGATAATGGACCAAAAAGTATACGGTAATTGAGGAGGTGGAGGTTTCAGAATATTATAAACTTTAAATTCTGACTTAACAATGAGCCAAAGTAACGATGATTGTGATGGTGGATTTATATTATGAACTTTAAATCCTGGCTTAAGCAACTATGATTGTAACGATGAAACAATGATTATGATGGTGAAATTATATTATAAGCTTTAAATTCTGACTTTGCGATTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325356" ref_strand="+" ref_description="SGN-U325356        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to nitrate-responsive NOI protein, putative [Arabidopsis thaliana] (TAIR:At5g63270.1); similar to nitrate-induced NOI protein [Zea mays] (GB:AAC03022.1); contains InterPro domain Nitrate-induced NOI (InterPro:IPR008700) | chr5:22620603-22622458 FORWARD | Aliases: MWJ3.3, MWJ3_3(evalue: 2e-18, score=89.4) genbank/nr: gi|20465673|gb|AAM20305.1| putative nitrate-induced NOI protein [Arabidopsis thaliana] >gi|17529052|gb|AAL38736.1| putative NOI protein, nitrate-induced [Arabidopsis thaliana] >gi|8843736|dbj|BAA97284.1| NOI protein, nitrate-induced [Arabidopsis thaliana] >gi|15241050|ref|NP_200396.1| nitrate-responsive NOI protein, putative [Arabidopsis thaliana] >gi|2642215|gb|AAB86938.1| NOI protein [Arabidopsis thaliana] (evalue: 2e-22, score=108)">
      <seq>agaaaaaaaaagagagagattctctctccttttttttcctttattgaaaaaaggctcttccttttttttttcttctaaaaaaaaaaaaagagaaattaattctttttaaaaatacataatcaaatcaatcatttccagaaacaatttctctatttccaaactccaaatcaatggaggaagcaggacgaccacttccaaaattcggtgagtgggatgtcaatgatccagcaacagctgaggggttcacggtgatctttaacaaagctagaaatgagaaaaggtcaggtggaaaggcagacgcgccaccaaagagtaaccacaagcatacagcaacgcttgggaagcctcaatctaagaaatggttctgctgtatgcggtctggtgctgtcgagtgatgaactctgtcaagctatgatggatcgatctcggtgggataaaacactgtcatttataaacaactgaaatgaaagtactgtgttttgctaccagaacatattgctgcatctgtgcttaacttttttctagtttcgagtttataataatcgattatcttcccattttcttgtcaaggctttgggaggttggtttttgttgtcattacttttacttgtgtttctcgattgacatttcctttcaatgatcgcaaatatctgaaccaatacagacgtctaagctgtatgtatgctcaatgaaatcaaatgtcggattcaaaaaaaaaaaaaaaaaactcgaggggggcccggtcccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="66503" stop="1843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66203" g_stop="66024" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66023" i_stop="65074" i_length="950">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65073" g_stop="64897" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="353" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64896" i_stop="64519" i_length="378">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64518" g_stop="64121" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="751" r_length="398" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U325356" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66203" e_stop="66024"/>
          <exon e_start="65073" e_stop="64897"/>
          <exon e_start="64518" e_stop="64121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAAAAAGAGAGAGAGATTCTCTCTCTTTTTTTTTTCCTTTATTAAAAAAAGGCTCTCCCCTTTTTTTTCTAACTAAAAGAAAAAAAAATTGAAATTAATTCTTTTTAAAAATACATAATCAAATCAATCATTTCCAGAAACAATTTCTCTATTTCCAAACTCGAAATTGATGGAGGTATGTATATATACATATCTATCAATATATATATAAATGTTGTATTCTTTCACAATGAAATTGTTGATTTTTGTGCAAATTTTATGGTTTCCATGTGAATTTATAATGTTGTTTTAAGATTCATATGGCTGCCTTTATTTTGCTTTCTAGCTTGTTTTGGTAATGTGTATCGAGGATCTATCGGAAACAATTTCTAAGGTCTGCGTACATTAAGTTTTTAATTTTCAGACTTTACTTGCGGGATTATACATTACAAACAAAAACAATTTTAGCGGTAATATATATGCATATTAACAAAAAATGTTACTTGCCTCTAAAAGAACATATTTAGCTGCGATTAGAATATTTCTGCCGCTAAAAAATCATCTTTGATGTAGTGACTTGACTCTAGATGTTTTTTAAGATCTTTCTCTTGTTTCATATATGTTTTTCTATGGTATTGAAGTAAAATATAATTGTTGAAATGGCGAAATACTATATGATCAAGATTCCTAAATAAAGCGGGAAAAAAAAACATGTTATATAGCAACAATTGTGAGACTAGTACTAGAGTTATCTGGTACGTGTTGTTGGAGTGAGATGTCAGGTATTCTGTGAAATTAGTCGAGGTGTGCCCATACGTGCATATGCACCAGGTGCAATAATATGATGATTGATTATGATCATGAAATGAGTAAGCTTTAGAATCATATAACAGAATTGTGTCTGAAAATCAACAAACTCTTTGAATGAATTCGGATTTAGTTGAACAGATACTTGATCCATATATATACACGACTACACGAGTTGATGAGTACGAGTCATCAGTAAAATTGCCATTTTTCCCTTGGTGTTTGCTTCCACAATCTACTGTTATGGTCTTGATGTAGTTATTTGCTTCTCTGGTTTATTCAAGTTGTTCGACTTTGATGTTTTATACGAGATTCATAGTTACATATTAATCGCTATAGGAAGCAGGACGACCACTTCCAAAATTCGGTGAGTGGGATGTCAATGATCCAGCTACAGCTGAGGGGTTCACGGTGATCTTTAACAAAGCTAGAAATGAGAAAAGGTCAGGTGGAAAGGCAGACGCGCCACCAAAGAGTAACCACAAGCATACAGCAACTCTTGGGAAGCCTCAATCTGTAAGTTCTAGCTGACTCTATAACTACAAGTTGTGATGGTTCGATGATATCTTTTCATGAACGTTGTGTCTCTACGCTAATGTGCTATGCATTGTCCACACTCCAAATGTCTTGGTTGACGGGGTGCATTGTTGTCTCCTTATATGTTTTTCGACAATTTTCACCTGTGAGCTAACTTTTGGGTTGACTAAAACACTCAAGGAGTCTCGCACACAAGAGTTAGTCTAGTGGTCAATGACGTGGGTTGATCCCATCAGAGACAAAACACTAAGGAGGCACGGTTATCAAAATACCTTTCCATGTGTTTATCAAGAGTATGTATGCAATAGATTTGAGAAGTTCGCGATAAATAATCTTGTGAACATGTTACTTTTTCAGAAGAAATGGTTCTGCTGTATGCGGTCTGGTGCTGTTGAGTGATGAACTCTGTCAAACTATGATGGATCGATCTCGGTGGGATAAAACACTGTCATTTATAAACAACTGAAATGAAAGTACTGTGTTTTGCTACCAGAACATATTGCTGCATCTGTGCTTAACTTTTTTCTAGTTTCGAGTTTATAATAATCGATTATCTTCCCATTTTCTTGTCAAGGCTTTGGGAGGTTGGTTTTTGTTGTCATTACTTTTACCTGTGTTTCTCGATTGACATTTCCTTTCAATGATCGCAAATATCTGAACCAGTGCAGACGTCTAAGCTGTATGTATGCTCAATGAAATCAAATGTCGGATTCAAAATTTAAACACTGTACATTTTTGAGTTGAGAGAGCGAGTT</genome_strand>
        <mrna_strand>AGAAA-AAAAA-AGAGAGAGATTCTCTCTC-CTTTTTTTTCCTTTATTGAAAAAAGGCTCTTCCTTTTTTTTTTCTTCTAAAA-AAAAAAAAAGAGAAATTAATTCTTTTTAAAAATACATAATCAAATCAATCATTTCCAGAAACAATTTCTCTATTTCCAAACTCCAAATCAATGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGGACGACCACTTCCAAAATTCGGTGAGTGGGATGTCAATGATCCAGCAACAGCTGAGGGGTTCACGGTGATCTTTAACAAAGCTAGAAATGAGAAAAGGTCAGGTGGAAAGGCAGACGCGCCACCAAAGAGTAACCACAAGCATACAGCAACGCTTGGGAAGCCTCAATCT..........................................................................................................................................................................................................................................................................................................................................................................................AAGAAATGGTTCTGCTGTATGCGGTCTGGTGCTGTCGAGTGATGAACTCTGTCAAGCTATGATGGATCGATCTCGGTGGGATAAAACACTGTCATTTATAAACAACTGAAATGAAAGTACTGTGTTTTGCTACCAGAACATATTGCTGCATCTGTGCTTAACTTTTTTCTAGTTTCGAGTTTATAATAATCGATTATCTTCCCATTTTCTTGTCAAGGCTTTGGGAGGTTGGTTTTTGTTGTCATTACTTTTACTTGTGTTTCTCGATTGACATTTCCTTTCAATGATCGCAAATATCTGAACCAATACAGACGTCTAAGCTGTATGTATGCTCAATGAAATCAAATGTCGGATTCAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCGGTCCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330096" ref_strand="+" ref_description="SGN-U330096        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tgtacaacagaagcaacagactatagcaggcatagggatcatgataaagatctaggagggcaatgctcaaattatcatctcatgctagtcgagaacttggagagaaccttgttcccttcgtcattgagagatttcatacataagcacacttctgtttggtcacaagcatatatttacccgtgcccgtcatatatgccctatgcacgaggcatcatcgtggtagattgtgaagagaagcttaaaaaaataaaccggtttttggacaatccagcgcaccttgttgtgtcctcaaagggaaggccgatggttataagtgaaatagatatgagacaatccatgattaagacatcgcttgggagcttaatgtacagttcccaggatgtatatcaggcaaaaagtatctgccaagacttgataatagtaaaaacaggaactgaagcatacagaaaagcaaagcaggcaaaagatttatttttggagtttgtaagtcatcaacagagactctataagaagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="73237" stop="69627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73017" g_stop="73005" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73004" i_stop="72930" i_length="75">
            <donor d_prob="0.666" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72929" g_stop="72644" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="299" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72643" i_stop="71005" i_length="1639">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71004" g_stop="70926" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="378" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70925" i_stop="70066" i_length="860">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70065" g_stop="69927" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="517" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U330096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73017" e_stop="73005"/>
          <exon e_start="72929" e_stop="72644"/>
          <exon e_start="71004" e_stop="70926"/>
          <exon e_start="70065" e_stop="69927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAACAGAAGGTGTGCTATGGAACTCCATCACCTGTTACGATGTGGTAATTGCACTTTTTCTAAGTTCTTCATTCTGAAATGCAGCAACAGACTATAGCAGGCATAGGGATCATGATAAAGATCTAGGAGGGCAATGCTCAAATTATCATCTCATGCTAGTCGAGAACTTGGAGAGAACCTTGTTCCCTTCGTCATTGAGAGATTTCATACATAAGCACACTTCTGTTTGGTCACAAGCATATATTTACCCGTGCCCGTCATATATGCCCTATGCACGAGGCATCATCGTGGTAGATTGTGAAGAGAAGCTTAAAAAAATAAACCGGTTTTTGGACAATCCAGCGCACCTTGTTGTGTCCTCAAAGGGAAGGTACTTTCCAGAATTAGTTTCCTTGCTAAGTAGTTGATCCTTTTGTAATCTTCTCTCTTTACATTCTATTGTCTTCACCAAAAAGAATTGTTTCTTCTTATTATTATCAATACATAGGCTTCATTGATGTGTTCTATACCATTATTACGTGTATCAATTAGACCTGTATTTATGGCTAGTTGTTTGGTGAACCTTTTTACCTGGCTAATACTTTCCCTGTAAATTACTTAGATCACTTCCAGGATTTTGTCAGCTCAACTCGGTAAGTGTTTTGTTCTTACTGACCTGACTGATCCCCCTTCGTATTGCATCTGCTTGTATGCTTACTTCATCAAAATAATAATAATAATAATCTATCTCCCGTTATAGTTATGTTGTTTGAGTGTATCAGAATCATTGGTTCCTGCCTCTATACAGATTATGAGCTAAAACACATTTTCATTCAGTTAAAGATCATGCTTGGCGCCTTGGCGTGGATCAAACTTGCTTAAATAGATTTTTGGATATTCTACTTAGAAGAGCTTCTGTGCCACAATTACCAGCCACTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAACTATTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACGTTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATATAATCCTAACATCTCTTTCTTCTATTTTTCCCTTTTCACGTTTGGCATAATAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAAACTATTTTAGATGCGTAGATAGCATCGGCGTGTATTCATGACGTAAAGTTTTATCAAGCTTGCTTGTCTTCTCAAACTTTTTTTTCTTTTCAATTTTTTTGGCATGCTTACATTTCCTGAGTTCCGGTCTGTCATATTATAGTCAATTAAAAGAAAGAACAGACTCAAATAAAGTTCCCCAGCACTGTAGTAGCCTAGTGGTCCTGCAGAGACACACAAAAAAACAGTAGGTGACTTCTTCCCATCTGTCCTAGCTAGCCTTGGTGTCCACAATTGATATGTACAAATTAGGCCGAACATACTATCTTCCCAATTTTCAACTAGCGGTTGCTTGAAAAAATGTCATGTTCATTGAGGCACTATTTGTTTTTGTTTTTCATTTTCAGAAGTTGAAAGTTTTTTTTTATTCTATCATCCCCCAATATCTACTTCAAAGGCGAAAAAGCTGGAAAGGAAGTGCAACACTCTGGTTCTGTGTGCACTACCTTGTTTTTTTTAAAAAAAAAATTTATAAATGTAGTTTAAACATCTGAAATCCTTAGATATCGCTCTATGATTTTTGCTCAATGTGTAGATCATATTTCTTTTTATCACTCAAGAGTAGAATTTTCATGATGTTCATACGTCCTCTAGATTGATGAAGGCCTAATGGGTTATTTACTTTTTTCCATTTCCCTTTACAGGCCGATGGTTATAAGTGAAATAGATATGAGACAATCCATGATTAAGACATCGCTTGGGAGCTTAATGTACAGTTCCCAGGTATCGTTTATGCTATTTATTGGTTAGATTTGATAATGGTTTTAGGACAACTAATGAGCCATAATTGTTAGATGTGCAGTATGGTACATTCTACTGTCACTGCTACTTCACAATGAGTTTAGTTGACAACGTATTGGAAAATATCATATATATGAAGTTTCTTGATAATCTAGAGACATGCATATCTAATAGTTACTCGTTACTAGTGAAAAACTGGATGCCCAGTTGTCACTAGTCAAACTTAGATTGACTTTAACTGATTGATAACAGGAGAGCTGAGAATGTGGGATCAATTGCTCTTAACATTTAGGAATCAAACTTATCTGTAGTAAATTTGTATACTCATGGTCTTGAGAAATGTGCTTTTACACATAATTGTGGGAGCGCTTCAACGAAAACAACATACCCAGTGTAATCCCACAAGTGGGGTCTAGAGAGTGTGGTGTGTAGAGTAAATCAAAATCAAGTATCGAAAGTGAATACAATAAGAAGAAGGCATGCTGAAATAAAAGAACACATATGGAAAAGAAATAAGGTGTCTTTTTGTCTTTACAACAGAGAAAAAGAAGGGTGAAATTTTAGGCTGATAAGGTAAAATTGGTTTCATTCGACATATTGCCAGTACATATTACACTATATGATGTGTGGTGGAGTCTTGAATTCAAGACTAGTCTAGATACAAATAAGCAAATACTTGAAGGATTGCAGGAAATATTTTTTAAAAGAATCTTAAACTTATGGAGGAGCTTCAAGGCCTGAACATTTTATGATGTGTATTTCATATTATATACATCAAATGTTTTATTTCAGTTTATTGAGGTTGATTGCTCTCTCCGTCGTGTTTTCTCGGTATGGTGTAGGATGTATATCAGGCAAAAAGTATCTGCCAAGACTTGATAATAGTAAAAACAGGAACTGAAGCATACAGAAAAGCAAAGCAGGCAAAAGATTTATTTTTGGAGTTTGTAAGTCATCAACAGAGACTCTATAAGAAGTTAG</genome_strand>
        <mrna_strand>TGTACAACAGAAG...........................................................................CAACAGACTATAGCAGGCATAGGGATCATGATAAAGATCTAGGAGGGCAATGCTCAAATTATCATCTCATGCTAGTCGAGAACTTGGAGAGAACCTTGTTCCCTTCGTCATTGAGAGATTTCATACATAAGCACACTTCTGTTTGGTCACAAGCATATATTTACCCGTGCCCGTCATATATGCCCTATGCACGAGGCATCATCGTGGTAGATTGTGAAGAGAAGCTTAAAAAAATAAACCGGTTTTTGGACAATCCAGCGCACCTTGTTGTGTCCTCAAAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGGTTATAAGTGAAATAGATATGAGACAATCCATGATTAAGACATCGCTTGGGAGCTTAATGTACAGTTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATATCAGGCAAAAAGTATCTGCCAAGACTTGATAATAGTAAAAACAGGAACTGAAGCATACAGAAAAGCAAAGCAGGCAAAAGATTTATTTTTGGAGTTTGTAAGTCATCAACAGAGACTCTATAAGAAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338152" ref_strand="+" ref_description="SGN-U338152        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:12957844-12958719 FORWARD | Aliases: T30C3.2(evalue: 2e-18, score=90.1) genbank/nr: gi|30686844|ref|NP_194263.2| expressed protein [Arabidopsis thaliana] gi|22136674|gb|AAM91656.1| unknown protein [Arabidopsis thaliana](evalue: 1e-16, score=90.1)">
      <seq>ttgactggggacggtgaaacgatgacggcgaagttcgagggatatccggaaaaattcgatgtgaaattccttgctgatgacttgaaatcgaaggaggaaatggatgaattcgttaggaggtttaggaatgtttcgccacagctgcaagataatgaatgcactagtgttaaagaacggatgaatgcctgagcggcttgaaatgcttatggcaaagaagatatgctcttctacgatgccgttgttgaagcgatacacaaaaagaaccatacatttcacaatggagcggaggagtgcacatgtacctttgtactatcctggcttcatggcccaaagaaagatgacttggctaattctggaattgaaggcatatgtttcataaaaggcacaacccaagttgatcctacaatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="77297" stop="73010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76998" g_stop="76750" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76749" i_stop="73472" i_length="3278">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73471" g_stop="73310" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="411" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U338152" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76998" e_stop="76750"/>
          <exon e_start="73471" e_stop="73310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAGGATAATGAATGCAGTAGTGTTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTTGGCAAAGATGATATGCTCTTCTACGATGCCGTTGTTGAAGCGGTAAGTTATGAATTGTTTGAAGTGTGAGAAATTTTTAATTTTTTTCAGATGCATTTAATCGAGGTAGCTATTTCTATTACGTTCTGATTCTGTTCAATTCTCAGTTCCAGATGTTGAGTATGATCATAGGTTTTCAGAAGGCTTAACACATAGTCAGTGGAAGAATATTCCACTCGAACTAAGTCATGTTCAAATTGATCACCGTTAACTGGATAAACTGTTCGAATTGAAAAAAAATTGGGCATGTTTTCATTCATCTAGTGGATATTTAAGTTAGCTACAATTAATATATCATCAACCTCAGGTAGAAAGTATCTGGCTTTTATTGCTTACTGAGAGAAATGCATATGACATATTTTGTATGGTTGACTGAATTACTTGATATAAGAATGAAAAAACATTTTTTCCCAAAATTTGAACCTTAAGTGTCTTATTGAAGACTTCATTAGGAGTTGAGATGTTCAATTGAAATTTGACTTTGTTTGAGTGTCTAAAGCTTAAGGGGCTGGTTATATATTAACCTACTTTAGAAATTTTATCTGAATATTCTGTAAGCATAGAGGTCCTACTCATGGAATGAAAGGAGGCTTAGTTGCTCGGACTCAGGTCCGGGTGTCTACTACGGGTGTGGATCTAGAGGTCGGATCCTCTGAGTCCTAATCTTAAGATTCGGGGATATAGTTCCATGTGTGGATACAAGTGCAGGAATTCGGCTACATTAGAGGGATAAAGCCTAAATTATGAGATATTATGTGGATAGCTCGAGGAGAAAATAATGATCAAGAGGAGAATCTTGGAAGGAGATAAAAGGAAAGGGAGTGATAATAGAAATTTATATATACAAGATACTTCATTTTCTTCAATTTCATCTTAGGTTATAAAATTACAAACATCATTGAGTCTGCCCGGAATTTCTTTCTCAAATTTGGTCAAAGTATCCAGAACTGATTGACCAGATCGGGTGTGGATCCCGAACCCACACCCACATCGTGTCGACATGGGTGCGGTACCGAAAATGAGGAGTCCAAGCAACTTAGAAAGGAGGAACTTAAGGTGAGGAAGGTTGACATAGTCTAACTATGATGAACCTTTGAATTCAAGGATACAGAGGGTTCTGCGGTTGATAACAGCTAATTCAGGATTGAGGCAACTTGATTAATATTACTTGGTATTAACTTCTTAACAGTCATTTCAAACTAATCAACTCGCATATGTTATCTTTTAGCATTGTATAGGTCCTAAGCACGGATAAAGGATGAAGGTGAGGTAGGTTGACATAGTCTAAGTATGATGAATCCTTAGAAATCAAGGATACATAGTGTTCTGGGGTTGTCTGGTTGATGAGTTGATCACTAATTTGCGATTTAGGCAATTTTTTCAGTCATACCAAATTATAAGCTCACTAGAGCAACATTTTCATGGCATGTGTACTTCTCTTTTAATGTGGCAGCTCTAAATGGAGTGCTTATCTCCTTGTTATCAACAGTTGCAAGTAATCTTCTGTTCCTTTTCAACTATAAAAAAAAGCATGAAATAAGAATGTTGAACTTTTATTTAATTGACAAGTTATAACAAACAAAAATTACTTAAGGATATTTATGAAAGTGCATTTTCAAAAAAACTAGCGTGAGAACAGTAATTGGAGATACAAAAGAATTTCCCATTATTATGGGTTCAGCAGGGGTTGATATTGAGCCTGTAGTTCTGTACTTGCTTGCATAAGCTATACGCAAATGATAATGTGTTAATAGGCAAAACTAGTGAGGGTGTCAACCAAATTATGGAAACAACAATAGAGATTAAGGGTCTTAAGAAATAAAGCTGAAATATATGCACTGGTAGCATTATGTAGTGCAGTGTCCGAAGATGTTTTATGTTGTTAGTGTGGTGAGTAGCAGAAATGGATCCAAGATTTGGCCTTTATGGGTTACAGACAATCTCAAGTTTTAGTAATGAGTTCTGACTTTTATTTCTGTACATATTTAGTGAATTCTCTTAGCACATATACAGGGTATGGGCCAATACTATTGGAATCTGGTGGACCCATACCTTAAAGCCTACATCCACCCCAGGTGAATAGAAATCTGGCATGTCCTTGAAAAAAGCAGTAGCAGATAGTGAAGCATTTTTTTGTGCTGTAGTAAACAGTGAAATGAATTTTGAGATATTTGAAAAGTAGTACAGATATTGGTCTGACATTCATCGAAAAGCAAGATGACATATTAATTCTATGTTGAGGTCTTGTGTAGGAGGAGATATTTAACTGCTACTTGCTTACTCATTGTGGTGGTGACTTGTGATGTCAATTGAAATGCAAATTTACAAACTAAAGTTGCATTGTCTATCATGGAGTCTCTGTAAGTGGCTCTCTTACGGATGCAGTAAAACATTTATTTGGCCACAGGTTGATGAATGAAGTTTTAGGCTGATTAGCAAGTGACTGAATTCAGGCTAAAAAAGAGCAAGGCATCAATATTTTGTTACAGTCAGAGTGCCATTCATCTCACTAGAATTGAGTGTATCATGAGCGTACAGAGAATACTGTTGTTAAATATCACTTCAGCAGAGATATTGTATCCAGTGCTATTATAGTTGTCAAAAGATTTCTACAAATGCATATCCATCAGATATTATGATCAAGGCAGTTTTGGTTCGTAGTCTAGGCATTTCCAAGACTCAGTTGGAGTTGGCTGTACTAAGTGATGCCTTGTGAAGGTAATTTGACAAGATGGTGTGATGAGATAATTCCTTGTTGATAATGGAGGACTTCAAGGCTCAAGCAAAGGGAGCAATTGTTGATGTGGGTTGAGTTTTATGGTAATTGATATTAATAAGATACTGCAGGCTCTTTCCTCAGTATTTCCTTATCTGTGATAAAAAAAGTTTCTTTAAAGGACAATGATCATTCTAGTGTTTCTGTACAGTTTAGGGTGTGATAGGAAAGGAAAAAGGAAGAGGGATAGAGTGTGAGACAAACTAAGCAAGTGGGTTTGTGAACATATTGGGGACTAAAGTTTCTAAGAACTTGGAAAATGATTGTCGCTGTTGTTCTTTTGAGCATACTGAAATTTTCTTACCATCTTTCTTGAGGATGTTGACATCTTTGCTGAACCTCATTAAAGTTTGTATCAGTTTTTTTGTTGCTCTAAATGTGGGTTTATCATAACATATAAAGTAAAAGTAGCAAGACTCAAAGAGGAAGACAGGGCTACTTGATTCATATCGATTCGTTGGCCTAATTCACTTTCTTCAAATTTTCTTATTCCTCTCTCTGGCAGATACACAAAAAGAACCATACATTTCACAATGGAGTGGAGGAGTGCACATGTACCTTTGTACTATCCTGGCTTCATGGCCCAAAGAAGGATGACTTGGCTAATTCTGGAATTGAAGGCATATGTATCATAAAAGGCACAACCCAAGTTGATCCTAGAATATCC</genome_strand>
        <mrna_strand>TTGACTGGGGACGGTGAAACGATGACGGCGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAAGATAATGAATGCACTAGTGTTAAAGAACGGATGAATGCCTGAGCGGCTTGAAATGCTTATGGCAAAGAAGATATGCTCTTCTACGATGCCGTTGTTGAAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACAAAAAGAACCATACATTTCACAATGGAGCGGAGGAGTGCACATGTACCTTTGTACTATCCTGGCTTCATGGCCCAAAGAAAGATGACTTGGCTAATTCTGGAATTGAAGGCATATGTTTCATAAAAGGCACAACCCAAGTTGATCCTACAATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325129" ref_strand="+" ref_description="SGN-U325129        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:12957844-12958719 FORWARD | Aliases: T30C3.2(evalue: 3e-13, score=72) genbank/nr: gi|30686844|ref|NP_194263.2| expressed protein [Arabidopsis thaliana] gi|22136674|gb|AAM91656.1| unknown protein [Arabidopsis thaliana](evalue: 2e-11, score=72)">
      <seq>taaatttcattttcccacagttttcaaatatacgtatacatacggtcgaagtttctagaagatttgatgaatttaccggtgccggaaatgaaaaagcccgacggaaatccggcgaagtacgatttagagcatcggtacaagggagatgactcatggtacggtgtgctagtgacggtggacggtgaaacgatgacggtgaagttcgagggatatccggaaaaattcgatgtgaaattccttgctgatgacttgaaatcgaaggaggaaatggatgaattcgttaggaggtttaggaatgtttcgccacagctgcaggataatgaatgcagtagtgttaaggaagggatgattgtctgtgcggcttgtaatgcttttggcaaagatgatatgctcttctacgatgccgttgttgaagcggtaagttatgaattgtttgaagtgtgagaaatttttaatttttttcagatgcatttaatcgaggtagctatttctattacgttctgattctgttcaattctcagttccagatgttgagtatgatcataggttttcagaaggcttaacacatagtcagtggaagaatattccactcgaactaagtcatgttcaaattgatcaccgttaactggataaactgttcgaattgaaaaaaattgggcatgttttcattcatctagtggatatttaagttagctacaattaatatatcatcaacctcaggtagaaagtatctgggctttattgcttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="77466" stop="76115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77166" g_stop="76415" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U325129" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77166" e_stop="76415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTCATTTTCCCACAGTTTTCAAATATACGTATACATACGGTCGAAGTTTCTAGAAGATTTGATGAATTTACCGGTGCCGGAAATGAAAAAGCCCGACGGAAATCCGGCGAAGTACGATTTAGAGCATCGGTACAAGGGAGATGACTCATGGTACGGTGTGCTAGTGACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAGGATAATGAATGCAGTAGTGTTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTTGGCAAAGATGATATGCTCTTCTACGATGCCGTTGTTGAAGCGGTAAGTTATGAATTGTTTGAAGTGTGAGAAATTTTTAATTTTTTTCAGATGCATTTAATCGAGGTAGCTATTTCTATTACGTTCTGATTCTGTTCAATTCTCAGTTCCAGATGTTGAGTATGATCATAGGTTTTCAGAAGGCTTAACACATAGTCAGTGGAAGAATATTCCACTCGAACTAAGTCATGTTCAAATTGATCACCGTTAACTGGATAAACTGTTCGAATTGAAAAAAAATTGGGCATGTTTTCATTCATCTAGTGGATATTTAAGTTAGCTACAATTAATATATCATCAACCTCAGGTAGAAAGTATCTGGCTTTTATTGCTTACTG</genome_strand>
        <mrna_strand>TAAATTTCATTTTCCCACAGTTTTCAAATATACGTATACATACGGTCGAAGTTTCTAGAAGATTTGATGAATTTACCGGTGCCGGAAATGAAAAAGCCCGACGGAAATCCGGCGAAGTACGATTTAGAGCATCGGTACAAGGGAGATGACTCATGGTACGGTGTGCTAGTGACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAGGATAATGAATGCAGTAGTGTTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTTGGCAAAGATGATATGCTCTTCTACGATGCCGTTGTTGAAGCGGTAAGTTATGAATTGTTTGAAGTGTGAGAAATTTTTAATTTTTTTCAGATGCATTTAATCGAGGTAGCTATTTCTATTACGTTCTGATTCTGTTCAATTCTCAGTTCCAGATGTTGAGTATGATCATAGGTTTTCAGAAGGCTTAACACATAGTCAGTGGAAGAATATTCCACTCGAACTAAGTCATGTTCAAATTGATCACCGTTAACTGGATAAACTGTTCGAATTG-AAAAAAATTGGGCATGTTTTCATTCATCTAGTGGATATTTAAGTTAGCTACAATTAATATATCATCAACCTCAGGTAGAAAGTATCTGGGCTTTATTGCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325795" ref_strand="+" ref_description="SGN-U325795        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>ctcaattacttcgtgttccttgttttctcaacgagacatcagtacaagacacaacatcttagtactactcttgaagactcggaagaagagctcaagaattggaacgatacgagcattgacaacacacaaaagaatcctaatgatgcagagaaggaacaagtttaaatgctctttccacgtacagatcaacaatgtctaagatttcgaagtgcctcattcttttctagagtactttgaattataatttcgtattcgatttcacagtaacatttgtgtagtatttctctctagacataaggtttgtgttttgaggtaaaagaatgagagctataaggacattgaagagtagatatattgtcatttgcataagcacaaatgtgtatttttttgacatagtgcaagaaaagttgtggttttttttgaagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="78300" stop="1841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78000" g_stop="77572" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77571" i_stop="77221" i_length="351">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77220" g_stop="77197" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="453" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U325795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78000" e_stop="77572"/>
          <exon e_start="77220" e_stop="77197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTACTTCGTGTTCCTTGTTTTCTCAACGAGACATCAGTACAAGACACAACATCTTAGTACTACTCTTGAAGACTCGGAAGAAGAGCTCAAGAATTGGAACGATACGAGCATTGACAACACACAAAAGAATCCTAATGATGCAGAGAAGGAACAAGTTTAAATGCTCTTTCCACGTACAGATCAACAATGTCTAAGATTTCGAAGTGCCTCATTCTTTTCTAGAGTACTTTGAATTATAATTTCGTATTCGATTTCACAGTAACATTTGTGTAGTATTTCTCTCTAGACATAAGGTTTGTGTTTTGAGGTAAAAGAATGAGAGCTATAAGGACATTGAAGAGTAGATATATTGTCATTTGCATAAGCACAAATGTGTATTTTTTTGACATAGTGCAAGAAAAGTTGTGGTTTTTTTTGAAGAAAAATGTGAACTTGGCTACCTTTCTTTTTTTTTGTTTCTGGTTTCTCACTCGATATCCAAAGCCTAGAGCTTTTGTATAATTCTTGACTAGTTAAATTTTTTGTTTAAAATATTAAATTAATATAATCTAATTTAACTTCAAAAATTAATTACTTTTCTAAATATAAATGTTGGAAGTACTATATATAAACCTTTTATTACAATCTAACCATGTTACTCCGATTTGATACATTTGAACTGAAATTTCTTTAAAAATAACTTTTTCATTTTTACATATACATATAATCAAGATAATAATAAAATTTGCGTACGTTCGATCTCCGACAATTATTATTGTTATTGTTGCAAAACAACAAAAAGCAAATAAATATAAATAAA</genome_strand>
        <mrna_strand>CTCAATTACTTCGTGTTCCTTGTTTTCTCAACGAGACATCAGTACAAGACACAACATCTTAGTACTACTCTTGAAGACTCGGAAGAAGAGCTCAAGAATTGGAACGATACGAGCATTGACAACACACAAAAGAATCCTAATGATGCAGAGAAGGAACAAGTTTAAATGCTCTTTCCACGTACAGATCAACAATGTCTAAGATTTCGAAGTGCCTCATTCTTTTCTAGAGTACTTTGAATTATAATTTCGTATTCGATTTCACAGTAACATTTGTGTAGTATTTCTCTCTAGACATAAGGTTTGTGTTTTGAGGTAAAAGAATGAGAGCTATAAGGACATTGAAGAGTAGATATATTGTCATTTGCATAAGCACAAATGTGTATTTTTTTGACATAGTGCAAGAAAAGTTGTGGTTTTTTTTGAAGAAAA...............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326568" ref_strand="+" ref_description="SGN-U326568        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G46730.1 | Symbol: None | disease resistance protein (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. | chr3:17224054-17226597 REVERSE | Aliases: T6H20.240 (evalue: 1e-58, score=224) genbank/nr: gi|5911745|emb|CAB55838.1| NBS-LRR protein [Solanum tuberosum] gi|6164969|gb|AAF04603.1| disease resistance protein Gpa2 [Solanum tuberosum](evalue: 6e-129, score=463)">
      <seq>gatggttggccatgaaaatgaattcgagatgatgcaagatcaacttactagaggtgccagtgatcttgaagttgtctcaattgttggaatgggtggcataggtaagacaactttggctaacaaaatttacactgacccgttcgttatgtcttgttttgataaacgtgcaaaagtcaccatctcacaagattattgtgtgagaaatgtactcctacgtcttctttcttccataagtggaaagactcatcaaacttatgaggagcaagatgatgggcaactagcagaccagttgcaaaagcttctaaaaggcccgaggtacttggtagtcattgatgacatttggactactggagcttgggatgatataaaactatgtttcccagactgtaattgtagaagtcgaatactcatgactactcggaatatggaggtggctgaatatgctatctcaggtaggcctccttatcaaatgcgcctcatgaattttgatgaaagttggagtttattgtatgaaaaggtctttgcgagaggatttttccctcatgaatttgaaacacttgggaaacaaattgcatcaaaatgncaagagttacctcntatgattgttgttatagctggacttctttccaaaattggtaacagattggatcgatggagaagtgttgctgagaatgtaagttcagtgatgaacacagatcttgatgtccaatgcatgagagtattggctttgagttactatcacttgcctcatcacctaagagcgtgctttctgtattttgcactcttcccggaggataaattgatttttgtgaatgaacttgtgaaattatgggcagcagaaggttttctgaaggtagacgagacgaaaagcatggaacaagtggctaaacaaagtctaaaagatcttgtagatagaagtttagttttcatccaaagggtgagtagttttgatggaaaaataaaagcttgtggaatgcatgatgtgatccgtgaactctgcttgagagaagctcgaaaaataaactttgtgaatgttataatggacaatcaaaatccaagtaaacaagccaaacattttttcacaatgaaagttcggatcattatccaatcaaagcatcgaaaattgttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="90841" stop="92573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91141" g_stop="92273" g_length="1133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1132" r_length="1132" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U326568" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1133</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91141" e_stop="92273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTGGCCATGAAAATGAATTCGAGATGATGCAAGATCAACTTACTAGAGGTGCCAGTGATCTTGAAGTTGTCTCAATTGTTGGAATGGGTGGCATAGGTAAGACAACTTTGGCTAACAAAATTTACACTGACCCGTTCGTTATGTCTTGTTTTGATAAACGTGCAAAAGTCACCATCTCACAAGATTATTGTGTGAGAAATGTACTCCTACGTCTTCTTTCTTCCATAAGTGGAAAGACTCATCAAACTTATGAGGAGCAAGATGATGGGCAACTAGCAGACCAGTTGCAAAAGCTTCTAAAAGGCCCGAGGTACTTGGTAGTCATTGATGACATTTGGACTACTGGAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGTAATTGTAGAAGTCGAATACTCATGACTACTCGGAATATGGAGGTGGCTGAATATGCTAGCTCAGGTAGTCCTCCTTATCAAATGCGCCTCATGAATTTTGATGAAAGTTGGAGTTTATTGTATGAAAAGGTCTTTGCGAGAGGATTTTTCCCTCATGAATTTGAACAACTTGGGAAACAAATTGCATCAAAATGCAAAGGGTTACCTCTAATGATTGTTGTTATAGCTGGACTTCTTTCCAAAATTGGTAACAGATTGGATCGATGGAGAAGTGTTGCTGAGAATGTAAGTTCAGTGATGAACACAGATCTTGATGTCCAATGCATGAGAGTATTGGCTTTGAGTTACTATCACTTGCCTCATCACCTAAGAGCGTGCTTTCTGTATTTTGCACTCTTCCCAGAGGATAAATTGATTTTTGTGAATGAACTTGTGAAATTATGGGCAGCAGAAGGTTTTCTGAAGGTAGACGAGACGAAAAGCATGGAACAAGTGGCTAAACAAAGTCTAAAAGATCTTGTAGATAGAAGTTTAGTTTTCATCCAAAGGGTGAGTAGTTTTGATGGAAAAATAAAAGCTTGTGGAATGCATGATGTGATCCGTGAACTCTGCTTGAGAGAAGCTCGAAAAATAAACTTTGTGAATGTTATAATGGACAATCAAAATCCAAGTGAACAAGCCAAACATTTTTCAACAACGAGAGTTCGGATCAGTATCCAATCAAAGCAATCGAAAACTGTTGTCA</genome_strand>
        <mrna_strand>GATGGTTGGCCATGAAAATGAATTCGAGATGATGCAAGATCAACTTACTAGAGGTGCCAGTGATCTTGAAGTTGTCTCAATTGTTGGAATGGGTGGCATAGGTAAGACAACTTTGGCTAACAAAATTTACACTGACCCGTTCGTTATGTCTTGTTTTGATAAACGTGCAAAAGTCACCATCTCACAAGATTATTGTGTGAGAAATGTACTCCTACGTCTTCTTTCTTCCATAAGTGGAAAGACTCATCAAACTTATGAGGAGCAAGATGATGGGCAACTAGCAGACCAGTTGCAAAAGCTTCTAAAAGGCCCGAGGTACTTGGTAGTCATTGATGACATTTGGACTACTGGAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGTAATTGTAGAAGTCGAATACTCATGACTACTCGGAATATGGAGGTGGCTGAATATGCTATCTCAGGTAGGCCTCCTTATCAAATGCGCCTCATGAATTTTGATGAAAGTTGGAGTTTATTGTATGAAAAGGTCTTTGCGAGAGGATTTTTCCCTCATGAATTTGAAACACTTGGGAAACAAATTGCATCAAAATGNCAAGAGTTACCTCNTATGATTGTTGTTATAGCTGGACTTCTTTCCAAAATTGGTAACAGATTGGATCGATGGAGAAGTGTTGCTGAGAATGTAAGTTCAGTGATGAACACAGATCTTGATGTCCAATGCATGAGAGTATTGGCTTTGAGTTACTATCACTTGCCTCATCACCTAAGAGCGTGCTTTCTGTATTTTGCACTCTTCCCGGAGGATAAATTGATTTTTGTGAATGAACTTGTGAAATTATGGGCAGCAGAAGGTTTTCTGAAGGTAGACGAGACGAAAAGCATGGAACAAGTGGCTAAACAAAGTCTAAAAGATCTTGTAGATAGAAGTTTAGTTTTCATCCAAAGGGTGAGTAGTTTTGATGGAAAAATAAAAGCTTGTGGAATGCATGATGTGATCCGTGAACTCTGCTTGAGAGAAGCTCGAAAAATAAACTTTGTGAATGTTATAATGGACAATCAAAATCCAAGTAAACAAGCCAAACATTTTTTCACAATGAAAGTTCGGATCATTATCCAATCAAAGC-ATCGAAAATTGTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331191" ref_strand="+" ref_description="SGN-U331191        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G43470.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Closest Col-0 homolog to RPP8 | chr5:17479839-17484676 REVERSE | Aliases: MWF20.19, MWF20_19 (evalue: 2e-06, score=49.7) genbank/nr: gi|5524754|emb|CAB50786.1| Rx protein [Solanum tuberosum](evalue: 1e-47, score=192)">
      <seq>cgatctttagactacttcccaatgtaaagaagttgcagatatatggcattcaagaagactacataagaagtaacaaggataaggtcttccatgatctttgctacttagatcagcttaaggaattgaagtttaagacgaaaaagatagttattgcaggaatgtttcctacacctttgattcttccttctctaggtacatttccgaagaaccttaagaagttagcttttagaggtactcggttgcattgggaggatttggagattcttggtaagttgcctaaactcgaggcccttaaactaggatatgatgcctgcattggtactgattgggaagtaggtgaagaaggctttccacacttgaagatcttgcgattgaagcatttatacttgcatagatggatagctagatgtgatcactttccatgccttgaacgactagtcattaaccgttgttggagcatgtattcgatcccacaggactttgtagacataaccactcttcagctgattcatgtaagtgactctgcaaaatctgttgggaactccgccaagatgattcagcaggaaattgaagacaactatggaagttctgttgaggtctgtatcagttagtcctttcaattaaacctatctttttagttgatttacttaagaaggccttcattctcattttgtattttagtacttttttgtacttcaaagcttatatgagaagttagttctgttcaatcaatacaaaccagttgtttacaatcactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="92442" stop="93810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92742" g_stop="93512" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U331191" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92742" e_stop="93512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTTAGACTACTTCCCAATGTAAAGAAGTTGCAGATATATGGCATTCAAGAAGGCTACATAAGAAGTAACAAGGATGAGGTCTTCCATTCTCTTTGCTACTTAGATCAGCTTAAGGAATTGGACTTTAAGATGAAAAAGACAGCTATTGTAAGACCAATGTTTCCTACACGTTTGATTCTTCCTTCTATAGGTACATTTTTGAAGAACCTTAAGAAGTTAGCTTTTAGAGGTACTCGGTTGCATTGGAAGGATTTGGAGATTCTTGGTAAGTTGCCTAAACTCAAGGCCCTCAAACTAGGATATGATGCCTGCCTTGGTACTGATTGGGAAGTAGGTGAGGAAGGGTTTCCACACTTGAAGTTCTTGCGATTGAAGCAGTTGTACTTGCATAAATGGATAGCTAGTAGTGATCACTTTCCATGCCTTGAACGACTAGTCATTAACCGTTGTTGGAGCATGTATTCGATCCCACAGGACTTTGTAGACATAACCACTCTTCAGCTGATTCATGTAAGTGACTCTGCAAAATCTGTTGGGAACTCCGCCAAGATGATTCAGCAGGAAATTGAAGACAACTATGGAAGTTCTGTTGAGGTCTGTATCAGTTAGTCCTTTCAATTAAACCTATCTTTTTAGTTGATTTACTTAAGAAGGCCTTCATTCTCATTTTGTATTTTAGTACTTTTTTGTACTTCAAAGCTTATATGAGAAGTTAGTTCTGTTCAATCAATACAAACCAGTTGTTTACAATCACTATATGAGAAGT</genome_strand>
        <mrna_strand>CGATCTTTAGACTACTTCCCAATGTAAAGAAGTTGCAGATATATGGCATTCAAGAAGACTACATAAGAAGTAACAAGGATAAGGTCTTCCATGATCTTTGCTACTTAGATCAGCTTAAGGAATTGAAGTTTAAGACGAAAAAGATAGTTATTG-CAG--GAATGTTTCCTACACCTTTGATTCTTCCTTCTCTAGGTACATTTCCGAAGAACCTTAAGAAGTTAGCTTTTAGAGGTACTCGGTTGCATTGGGAGGATTTGGAGATTCTTGGTAAGTTGCCTAAACTCGAGGCCCTTAAACTAGGATATGATGCCTGCATTGGTACTGATTGGGAAGTAGGTGAAGAAGGCTTTCCACACTTGAAGATCTTGCGATTGAAGCATTTATACTTGCATAGATGGATAGCTAGATGTGATCACTTTCCATGCCTTGAACGACTAGTCATTAACCGTTGTTGGAGCATGTATTCGATCCCACAGGACTTTGTAGACATAACCACTCTTCAGCTGATTCATGTAAGTGACTCTGCAAAATCTGTTGGGAACTCCGCCAAGATGATTCAGCAGGAAATTGAAGACAACTATGGAAGTTCTGTTGAGGTCTGTATCAGTTAGTCCTTTCAATTAAACCTATCTTTTTAGTTGATTTACTTAAGAAGGCCTTCATTCTCATTTTGTATTTTAGTACTTTTTTGTACTTCAAAGCTTATATGAGAAGTTAGTTCTGTTCAATCAATACAAACCAGTTGTTTACAATCACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335568" ref_strand="+" ref_description="SGN-U335568        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | small ubiquitin-like modifier 2 (SUMO), similar to ubiquitin-like protein SMT3 SP:P55852 from (Arabidopsis thaliana); identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family | chr5:22400795-22402151 REVERSE | Aliases: MCO15.11, MCO15_11(evalue: 6e-42, score=168) genbank/nr: gi|1668773|emb|CAA67922.1| ubiquitin-like protein [Oryza sativa] >gi|57900450|dbj|BAD87743.1| putative SUMO protein [Oryza sativa (japonica cultivar-group)] >gi|19386713|dbj|BAB86095.1| putative SUMO protein [Oryza sativa (japonica cultivar-group)] >gi|2501449|sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3 >gi|18146762|dbj|BAB82439.1| ubiquitin-related protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-40, score=169)">
      <seq>gacattaatttcattattctccattaacagagagagagagaagaagaagaaaaaaagagggaaaaaatgtcgggagtagcaggaggggaggaagacaagaagcccgccggcgatcagtctggtcacatcaatctcaaagtcaaaagccaggacgggaatgaagtcttctttaggattaaaagaagcactcagctgaagaaattgatgaatgcttattgtgaccgacagtctgtggattttaattcaattgccttcttgtttgatggccgtcgtcttagagcagaacagactccagatgagctggagatggaagatggtgatgaaattgatgcgatgttgcatcaaaccggaggcacaactatttgagtctccttttcttttgtttctgtggatgcaagactttgtgtttcaagatggtattgaacttagtgaaatgctggttgtgtgcagctttaggacctttagactctgatgaatgggatcatgttttgcttacttcatattgaacttaatcgctaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaataaaaaataaaaaaaagaaaccaaaaaaaaatgggaaaaaaaagggccaaaaaagttcccggggggaccttgtaacccccaaattttttttttttaagggccccccaaaaaaggggggggaaaagagggaaaaattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="107079" stop="1816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106780" g_stop="106631" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106630" i_stop="104757" i_length="1874">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104756" g_stop="104607" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="300" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104606" i_stop="104461" i_length="146">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104460" g_stop="104243" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="518" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104242" i_stop="99067" i_length="5176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99066" g_stop="99049" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="536" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99048" i_stop="96755" i_length="2294">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96754" g_stop="96726" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="564" r_length="28" r_score="0.793"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96725" i_stop="96257" i_length="469">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96256" g_stop="96240" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="581" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96239" i_stop="95274" i_length="966">
            <donor d_prob="0.325" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95273" g_stop="95216" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="639" r_length="58" r_score="0.500"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95215" i_stop="95163" i_length="53">
            <donor d_prob="0.817" d_score="0.50"/>
            <acceptor a_prob="0.710" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95162" g_stop="95142" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="660" r_length="21" r_score="0.381"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95141" i_stop="95039" i_length="103">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="95038" g_stop="95007" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="691" r_length="31" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U335568" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106780" e_stop="106631"/>
          <exon e_start="104756" e_stop="104607"/>
          <exon e_start="104460" e_stop="104243"/>
          <exon e_start="99066" e_stop="99049"/>
          <exon e_start="96754" e_stop="96726"/>
          <exon e_start="96256" e_stop="96240"/>
          <exon e_start="95273" e_stop="95216"/>
          <exon e_start="95162" e_stop="95142"/>
          <exon e_start="95038" e_stop="95007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTAATTTCATTATTCTCCATTAACAGAGAGAGAGAGAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAGGTTTTTTTTTTTAATCATCTTATTAGGGTTTGTTTTCTATCGTGTATAATTTAATTAGGGTTTTGTCGATGAAGAAAATGAGGGTTGGAGTAGGTTTTATAGAGTAGCATAAGAATAATTATATGAATCTTTTCAATTTTGAAAAAAAATTGGGTTAAATAGAGAGGGGTAGATGTATATAATTGAGTTGATTAGTTTTTGGGTTGTGGGGTTGTTGATTAACAACAACAACAGTGTAATCCTACAAATTGAGGGTTTGGGGACGTTAAAGTGTATGAAAGATGTTACCTTTACCTTGGAGGTAGTGTTGATTGATTGATTTGAATGAATGATGGTTGATTATGCTTATTTACACTGTATTTTGGTTAGTGATATTCCTTTGCTACTTCTTTCCTTGGCTAATGGAAAAAAGATCCTTCTTTTACCCGCAAAGTGTGGTCTGGGAAGGGTAAAGTAGTGTATGAAGACCTTACCTTTACCTTGGAGGTTGTGCTATTGAATGGTTGATTATGCTTATTTTCACTGTATTAGGGTCAGCTATATTCCTTCGCTACTTCATTCCTTGGCTAATGGAAAAAAAAAATCTTCGTTTTACCCATAAAGTGTGGTCTTGGGAGGGTAAAGTGTATGAAGACCTCACCTTTACCCTTGGAGGTAGTGTGATTGAATGGTTGATTGTGCTTATTTTCACTGTATTAAGGTCAGGTATATTCCTTTGCTACTTCCTTCCTTTAATGGAAAAAAAAATTCTTTTTACCCATAAAGTGTGGTCTTGGGAGAGTAAAGTGTATGAAGACCTTACCTTTACCTTGGAGATAGTGTTGATTGATTGATTGATTCGAATGAATGCTTGATTATGCGTATTTACACTGCTTTAAGGTTAGCGATATTCCTTTGCTACTTCTTTCCTTGGTTAATGGAAAAAATCCTTCTTTTTACTCATTAAGTGTGGTTTGGGGTGGGTAAAGTGTATGCAGATCTTACCTTCACCTTGGAGGTAGTGTTGGATTGATTTATTAATTTGAATGAATGAATGATTATGCTTATTTACACTTAATTTGTTTTGATTTTACAATATGGTTAAAAAAGTTAAAAAATATAATAAAAAAGGATCCTTAGAAACAGAAAATAGATCGGAAGATAGAGTAAAAACATACCAACAAGTAATCCCAAATTGGGAATACTGAGGTTTTTCGACTTTGTACTAATGCTTTACAAGCTGCCAGCTAGAAAAATATTAGTTGTACATATTTAGATTTTAGTCTATTGTCTCATTACAGTTTTCTAAGTTCAGAGAGAGCCCCTATAAATTGTCATGTTGGGTCAAGGTATATTATCTTTTCTCGAGATTCACACTGTTATTTTCCGTCAATGCTAAACCAAGATTATCTTGGTCTAGCTCAACAAAATACTGCAAAAGATTATGACAATTACTGGCTTAGTTTCTCAGTCATCAACGGTAAACTTTGGTAATGCCTGTTTTAATTATCTGCCCTTAGTTGAGGTTGTTACCAAGTTGTGATCTGCCTTTGTCTTCATGATACGCCAATAACCTGTGATATACCCACTTCTTGAGCTTTTTGAAATTCACTTTCTATTGCAAGATCACCAATGTTTCTTTTTGACTATACACAGTTCATTCTGGCTATATAACTTGATATCATACGCAATTTTGTTGATTTTGTTATGTAGTTGATGAAAAAGTTACTGGCGGACCTTTTTCTTTCTTCGTCCTATCTTTTATTTCCATCCCTTACTGTTATTATGAAGGTGGGCAGCTCACTAAAATTTTCTGGAAAATAGCCTTCTCATGTATCAATGATATGGAGGAAATGACGAGAGAACTATGTATTTGACTAGTTTTCTGGTTGCAGGACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAGGTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTAAATGTGCACACACAAAAAGAGTACCAGAAGAGGGTTGTGCATCTGCTTGATGTTATCCATAACAATTGTGATTAATTTATTTCCTTCTTACAAATTTCCTCCTTTTTGCAGCTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGGGATCATGTTTTGCTTACTTCATATTGAACTTAATCGCTAATATTACTTTTTGAAAGTCATTATGTTCTTCATTTTTAATTTTCTGAAGATGACATGAATATGATCATAGTTTGGTCATTACGTCGAGTTTAACATCTGCCTATGGTCTCTATCTTAATGTTTTCGTCATGATGTAATGGTTAAGTGCATGTTGGGAGACGATGGACGGTGATCTTCCATTGTATGCCAGCATGACGCCACGCTAATGTCACACAAAGCATGAGCAGTTGAGTAAATATTTTGTAGCTAGATGAGTACTTACCTTGTGGGAAGTTTGTGTGTAGTTTTCCTTGATTTTTAGTGCAGAGTCAAAGAAAGGACTCGACTTTGAATGATAAATATGCTGCCAATTTGATTCATGGTGGTACCATATTAGTGCTAAAGAAAAGGACATGTGAGTTGGGCCAATATTTCAAAGTTTAACCAGTGACCACAACTTTCTAATGTTTCACAACTAAAGGAGATGTCTATTCCAAGACTGACCTCACCATTGAAATTCCACTGTGCAGCCTCCTTTCAATCCTTAACGTTCGTTCTAGTAACAACATTCCCACTTTTATTATCACTTCTGGTACTGGTAGGGCCAATTCTAACGCGGTACTCATACCAATCTAAATTATGCATGAATCTTCGATATGTATGGTTCTTCCACGAAAAAATTAAGGTCCACCTCTCTCTATTTCTATATCTATATATGGGAACCCTTGCAATGTAAAATCTCAAAAAAGTTGTATTACACCTATTAGACATGAAAACTTTTTACAGTACCTTCCTTTACATTCTACTAGTGCTTCTTCTTTTTTCACTTCCATTGACAATCACATCAGCAGCAAAAACTGAAGCTCAAGCTCTTGTCAAATGGAAGATGAACTTACCTTCTGCTTCTTTCTTGGATTCATGGTCCATTTCCAATCACGGAAACTTGTGCAATTGGACGTCTATTGTCTGCAATGCTGGTGGAACAATTTCAGAGATCAATCTTTCTGATGCAGGTCTCTCAGGCACACTTCATCAGCTTGATTTCACTTCATTTCCGAGTCTCACAAGTTTTTCTCTCAATGGAAACAACTTCAGTGGATCGATACCATCAAATATTGGCAATGCTTCTATGCTCACTTTCTTGGACCTGAGCAACAATATCTTGGCGGATGTCATACCAGAAGAGATTGGGAAGTTAACACAACTTGAATATCTTAGTTTCTATAAAAACTTTATCTTTGGTGTTATTCCCTACCAAATAAGCAATCTTCAGAAGGTATGGCGCTTGGATCTTGGATTGAATTTCTTAGAAACTCCTGAGTGGTCAAAATTGAGGAATATGCCTATGTTGACATATTTGAGCTTTGGTTACAATGAACTTCAATTAGAATTCCCTGAATTTGTACTGCGTTGCCATAATCTGACTTACCTCGATTTGTCATTTAACCATTTGAATGGTTCAGTCCCAGAAACACTATTCACCAACTTGGACAAGCTTGAACAACTCAATCTTTCATATAATTCATTTCAAGGTTCATTGTCACCAAATGTTACCAAGTTGACCAAGTTAAAAGAACTTCAGCTTGGTTTCAACATGTTTTCTGGCATAATTCCTGATGAAATTGGTCTGATCAGTAGTCTTGAAGTTGTCGTACTTTCCAATAATTCACTTCAAGGAAAGATTCCATCTTCTATAGGTAGACTTAGAAATCTACGACAACTTGATCTTCGAAATAATGGTTTGAATTCAATCATTCCTTCTGAGCTAGGCCTTTGTACTAACCTCACTCACTTGGCTCTAGCAGAGAATGCCCTGCAAGGACCATTGCCTACATCCTTGTCCGCGGTGACCAAGTTAATTTCCTTGCGCTTGTCTGATAATTTTCTTTCTGGTGAGGTTCAATCATATCTCATTACCAATTGGACTGAGCTGACATCTTTGCTTCTTCACAACAATTCATTTTCAGGGAAAATTCCACCTGAAATCAGCCAGTTGAAAAACCTCATATATCTTTACCTCTTTCGTAACAATTTCACAGGTTCCATTCCCTATCAGATTGGTAAGTTGCAAAACTTGCTGGAGCTAGATGTCTCTGACAACCAGCTTTCAGGCACAATACCTCCAACCATTGGAAACCTGACCAATCTAAAGATGTTGCTTCTTTTTCGGAACAACATCAGTGGAACCATTCCTTCTGAGATTGGCAAATTGACATCTCTTCAAACCCTTGACCTCAACACCAACCGGCTTAGTGGTGAGCTGCCTGAAAGCATTTCTAATCTCCGCAGTCTGGGTAATATCAGTCTTTCTGAGATTCTTCCAACAAGTTTTGATATTGGATGTTCACTTAGAACCTTCAACCTTCATGGAAATGAACTACAAGGGAAAATCCCTCGATCTTTAGCCAATTGTAAAGAGTTGCTTGTTCTTGATTTAAGTGATAATCACCTCAATGATACATTCCCCGTGTGGTTGGGAACTCTATCGATGTTGCAGGTTTTAAGTCTGAGATCAAATAAATTTCATGGACCCATTAGAACTTCAAGGATTGGAAACATGTTTCCTGCTCTTCAAATATTAGATCTCTCTCAGAACGCCTTCACAGGAAACTTGCCGACAAGTCTATTTCAACATTTGAAAGCCATGAAGACAACTAATCAAACAAGGAAAGATCCATTTACAGGAGGAAACTATTACCAAGACTCGGTAGTTGTTGTAACGAAGGGACGCAAGTTTGAAGTTGTGAAAATCTTGTATTTATACACAAGTGTGGATCTTTCAACTAACAAATTTGAAGGACTTATTCCAAGTATTATGGGAGATCTCATTGCACTTCGGGTGTTGAATTTGTCTAACAATGGATTACAAGGTCATATACCGCCATCACTTGGAAATTTAGCGGTAGTAGAATCATTTGACCTTTCATTCAACCACCTTTCTGGAGAGATACCGGAACAACTTGCTTCGATAACAACTCTTGCAGTGTTAAATCTCTCCTACAATCATCTTGAAGGATGCATTCCTCGAGGACCTCAGTTTAATACATTTCAGAAAAATTCATATGAAGGTAATGATGGATTGCATGGATTGCCAGTTTCAAAAGGTTGTGGTAATGATCAGGTATCAGAAACAAATTATACCATATCTGCACCAGACGAACAAGAAAGCAATTCGGAGTTTCTGAATGATTTTTGGAAAGCTGCTCTTATGGGCTATGGAAGTGGAATATGTATTGGATTATCCATAATATATTTCATGATCTCAACTCGAACTCCAAAATGGCTAGCAAGAATCATGGAAGAGTTGGAACACAAACTTATTATGCGGATTAGAAAGAAGCAACGAGGTAAAAGGCATTACAGAAGAAGAAAAATAATCGCTTCTAGACAAGTTACCAACTGAGTAGGATTTGATTACAGAACTTCGGGTATTCAAGTTAAGGTCTATGCTGATTTTTAGTTCATAATAGCTATATGTATTGATATATATATATAACTTTCGTTACAAAAACAGCTAATCGATACTTCATACTGAGTATACTTTCTTTCCAATAATTTCAGTATGTAGATTATATTGAAAAGAGCTAGTCTTAGTTGATGATTTAAGCTATAAATATATAACTATAAACATGTACGGAGGAGGAATCATGTAGATAAAACTGGATACTATTAGAGATATCTACATTCTGCATAGATATTCTAATTTTACGGCGTACTGGGAGGTGGCTTTTGAGTTTGTTTTGCCATCTAGATTAACAAGTGTTCATTGTGATTTCATTCTCATGTGTATATGTTTGAAGAAACATCACGAGTATATGTCACACATGCTACAGTAGGATAAGGTGAAGCTTTATCAGAATCTTACATTTAAGGAGGAGTCTGGCTATTTTAGACAGACAAGTCTAGAAGTTGAGGTCAGAAGAGATTGGCTTCGGTGAAAGGGCAATGAAATCATCCTCTGGTTGAGGAAGCTACTTGGGAGACTATCCAAAACTGCTTGACAGCTTAGGTACAATTCTAAACTCATTCGAGGATGAACATTTGTTTAGGTAGGAAAAAACAAGCACCCTTTTCCAAATTTGAGACTTTCTGTAGTTTCGTATGTTGCTAAAATTGCAGAAATGAGAAGAACTGAATAGGAAGAACTGTCTTTTATTGAACTTCAAACTGTCAAGTGTAAAGTAAATACAAGAGCATTACAACTGACATTGAAAATGGAATGGCTAAAGAACTGTTAAACATGCCTAGAAAAATAGGAACGTAAGAAGTAAATGAAGGAAGGTGATATCTTACAAGGCTAGAGGATATGGACCTCAGCGGAACTTTCATACTTGTATTGAATGTCCTGTTGAATTTGCTTGGCGGAATTCTCAACAGATTTTGCACACCTCCTTTTATCAACAAGAGCACTCATCATCAGATTCATCAGTCTCTGAAACAGTGGCTTTTGCACAATAATGAATGAAAATCATTGTAAATTTTGTTAGCCAAAGTTGTTTTACCAATGCCACCCATAAGTACAACTGAGACAACTTCTAGTTCACCTGCTCCTCTAGCAAGTTGATCCTGCATCATCTCGAGTTCATTTTCATGGCCAACCATTGGCGCCTCAACATGTTGAGATGTACTACTGGCGAAAGTCAAGTTCTGTTCTTCTGCATCTTTGCTTTTGGTGTACATGTACTGCATTTCCATCCACTTGTTCACCCTGGAATCAACGCGCGCTACTACTTGTTTCAAGAGAACATGAAGTTCCCAAAAAGTAAGTATTCTTGAAATTGGATTTCAACCATTTCTCCTCTAAGGGATTCAAGCTTCTTACAGAAAGATTGAAAATTATATCGAGCAACTTCCATCGATTGTTGTATGGTTCTCATAAGACGAAGTATTATTTTTTTCATGTTTTACCTTAACATTAATTACTTAAGACCTAATACTAAACATCGATTAAAAGGGGTAGTATGGTAAAATAGTCATATCGATAGATGTGTCTGATTTTACAAGCATCTCTTCTGCATATTGCTACAATAACCAACTTAGTCTAATTCCACAAGTAGAGTCTAGGAAAGATAGTGTATACACAGACCTTACCACTACCTCGAGAGGTAGAGAAGTTATTTCCAATAGACCCTTGGCTCAAGAAATTAAAAGGAATGAAGAAACGCAAAATGCTAACAAGGCATGACAAAGCATTATGAAAAAAAAAAAGAAAAAAGAAACAGTAACTAGGATGAAAGAATACGATGATCGAAGTACAAGGAACAATGATTAGTAACATATATGGAAGAAACAAGAAAGTACAAGAGTAATACTAATACTACTAGTATGGAAGGATAAGCAAGACAACATTCAACTACTATCATAATATCCTAAAGAGATCTGTCTTGCTTCTTTCTTTGAGGAACAAAATGCCAGAGGAACTAAGAATATAAGTGACTCAAGACACAATTGTCTCTCATCCTTTGCTAATAGAGTAGAACTAAGAGCTCCAAAAGCCAAAGTAGTTTGCAGACGCAGATATGGTATGGAATACTCTTTACATCCTTTATAGAACAATACTTGCAACAACATGAGAATCCATCCTGCTCCAGTTCAGAATTGGGGTTTCCTTAATTTTACATGCATCATCATGTCTGTATACTTGCTATTTTTATAATACTAGAGAGATCTTTCTTGCTTTCTTTGAGGAACAAAACGCCACAGGTCCACAGCAATGTCAACCTCCTTTTTCTTGTGAAATTTGTACAGTTGTGGCACATCATACCGAAGCTACAATTGAGAGAGATAAAGGCACAGAACATTCATAAGGCTACATAGAATTTCACTCAACATCAATAGCATGCAAAATGCTGAATCTGATTATTTCGATGTGTACCTCACATATAACTTCAGCACTTATTGCATTGTAATCTCGCAAGGCTGCTCTTTTCACATGCTGTTAAGACCATAGACAAATGCCAAATCACGATCTACATCAGAGCACTTTTGTGCACAGAATCATGTTTTTATCGAGAAGTGACAGCAATTTAATTTATGAGCACATAAACTCAAGAAAGTTCATATTTAAGCTATTTGATGCTACACAAATAGTTTTTTTCACCAATCAATCCCTTTGCTGTGGCAGGATAGTATGGAAGAACTTACTTCTCTAGTTGTGGTCTTATGTAAGGAATAAACTGCTTGAGAAGCAACCTGATACATTAATAAAACCACACATTAATCTAGGAATAGACGGGGACGCAGTGCCAATTCAAACAACAAAACAGGATATTGAGCAAATAATATAATCTTGGATACCAATTATATGGAGAGCACCACCGTACCTTCATCGCCGAAGAGAGGAAGTCCATGTCAGCACCTTTCCTCCGTGTTCCAAAAGGTGGATTCATAACCACAGTTTCAACAATCTGACCTACACATAGTGAAATATCAATGAGCCAAGAGAGATATTTTCTTTCGGGGCTGAAAAGTGAGGTGAAAAAGATACCTCTCCATTTTAAGTTGCTGATGTCGCATTGAATAAAATCCATGTCTAGCTGCAGATGAAACAGTTCAAGAAATGTATTGAAACACAGAAGGCTACATATATCCATCAAAACCAATGTAAAAGACTCAGCCTTGAACGCTTTCTCAACCTTGCAAGCAAAAAATGTTATCACATAAACGAATAATACCTCAAGCTCATCGGCATTTGCATACGCAATCTCAAGAGACTCAGCATCAATATCAAGCCCAATAACACTTCTGTTCACAAGAAAGACTATGTCAAGAACAAGCATACATAGAGAACCCTAGCAATCCGAACGGAGCTACGTATGCCAAAGGGTGGTTAGTTGAATACCCTTCACCAGAAGGGTATATATGGGTAAATGTCAATTTTATACATATATTCTAAATCCTAAACCCCCTTAGCAAAATGCCTAACTTCAACAATGTTGGGGTGCATCGTGCACAACAAAACACACCCCATGTAATCTCACAAGTGAGGTTTGGGGAATGATAGAATGTATGCAAACCTTACCCTAACTCGTAGAGATAGCGAGGTTGTTTCCAATAGACCCTCGGCTCAAATAACGTATCTCAAAGCAGTTTGAAAAAGAGAATACAAAAATGAAAGCAGTAACAATCCTCAAAGGGCTAGCGGAAGCCCAATACGATAATCAAAGCAATGGAAACAACACGTAATACTAAAATTAACGAATACAATAGTAGGAGAGTAATAACAACAATACTAATAAGGGGACTTGATAGTGCTCAACTACCTACTAACCTTGATAACTTCTCCAATATAACTACAAACAATAATACAGGGGTTGCACAAATATCATTCATATTATCTCCACACAACACTAAAGTTCAACAAAAGAAACAAAAAACAGATACATACTCGGCTCCCAAAAGGCCAGCAGCAAGGCCTAATGTACCACAACCACATCCAAAATCTGCAACCACCTTACTGTTCACATCCTCAAATGAATTCTCAGCCTAAAAAGATTAAATTTTTTTCACAAAAAAAACCCAAAAAGTTAAAAATAAAGATACCCTTTTAACCTTTAAACAAAACTCAAAAAGAAACACACAAAAAAGAGGGTATCTGCATATGAACAAGAAGAGAAAAAAAAAAGTGAGAATATAGAGAATTTACATACAGTGTAAAGCATACGAGAAGCAATGTGGGCTCCAGTAGGATATTGTTCTAGTTCAATCTGTTGTAGCAAAAAAGATCATTTTTTTTACTAAAATTAGTAATCAAGAATCATAAAAAATGGAAATAAAGTGCATAAAGATGTATATTTTGTATAAAGATAAAGAAAAAGGGAACCTTTGGGGTTGAAAATTGTTCAAGAGAACCAAGATAACTTTCTAATTGCTTCAGCTTCATCTTCACCTTTGATGACTGCTAAAGCTTCTACTGTGTGTCTGTGTGTGGGGAAAAAAAAGAGAGAAATTTTGTGATGTTTTTTTGGGCTTGAAAAAATCCCCAAGTCCAATTACTGCAATTAAGACAAAAACCAGCCCAATATGTTTGCACTTTTGACTCTATTTTGTATTTGGTCCTCACTTCAAGTCTTTTATTATACAAACTTTTTTTTGGGGACACGCCTCACTTCAAGTCTTTTATTATACAAATTTTTTTTTGGGGACACGATTTATATTTTTATATCATAATATTAGCAAGGTTTGCTTGAACGTGATTTCACTTTCTAAAAAAATTATGCTCATTAGGCCTAAGTTCGATCTACGATGGCTAGAAATTAAACACCAACTTAATTGCTTAACGCAATGTGTTTAGATAAACATTCTTAGTAGATTTACTATTCTTTCCTATAGTTTGAAATAATTAAATATTAAATTTCAAGTCATATATATTTGCTATCAAATATATCTAGAGTGATTCTCATGTATCAAGTATCCCATATAGTATTGGAGCGTAAACTAATGAATTATGTAAAATATAGTTTGAAATAATTAAATATTAAATTTCAAGTCATATATATTTGCTATCAAATATATCTAGAGTGATTCTCATGTATCAAGTATCCCATATAGTATCGGAGCGTAAACTAATGAATTATGTAAAATTATTCATAAACTTATGTTTTAAAAAATTAATGGGGTGAGAGAGGCTCGAAATCTCGACCTCAGGATTACTCTAATTGCTATAAGACCTACGCGCTAGCCAACAGCGCCACCACCCCTTTGTTTTAATGTAGTCTAGGATTTTCAATTATACTTTTAGTTGTTGACATCAGTAGGGATAAACTTAAATACTAAAATGATATTTATAGATATGAATATGAATCGATCGAAGTTCAAAACAGATAGATTAATGAAATAATATTGATACAAATATCTATTGGTACGAATATGAAACAAAGCTATCTATTGTAGTTCATTACAAATATTATTTTACTTGTATGGTAGAACGATCTTCAATTCAAATTATACGTGGAGAAAATAAAGTCAACTTGTTGTGTCTTGCTCTTCAGCAAAGGCTGAAAAATGATCAATGACAATGACCGTTTTGAGAACGGACCAAACAACTTTGTATATTGTCTACAGTCTTGTTTTTCATGAACGAACCAAACATACTGAAATAGATTGTCATTATTATGTTCGCGATGAGTTACAATCTAGTAGAGATTGTGAATCGTCCTTGAACAGATAACAATCCCATGGTTTTCACGCGCTTCATTGACCACACCTACATGTTTCATCCTGTAGATAAAGTAGCCAGACATAAAGGATGAAATGTA</genome_strand>
        <mrna_strand>GACATTAATTTCATTATTCTCCATTAACAGAGAGAGAGAGAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAG..................................................................................................................................................CTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGGGATCATGTTTTGCTTACTTCATATTGAACTTAATCGCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.......................................AAAAAAAAAGAAAAAAATAAAAAATAAA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAACCAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGAAAAAAAAGGGCCAAAAAAGTTCCCGGGGGGACCTTGTAACCCCCAAATTT.....................................................TTTTTTTTTAAGGGCCCCCCA.......................................................................................................AAAAAGGGGGGGGA-AAAGAGGGAAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328655" ref_strand="+" ref_description="SGN-U328655        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:14232452-14234005 FORWARD | Aliases: F16A16.60, F16A16_60(evalue: 4e-82, score=301) genbank/nr: gi|30688121|ref|NP_194612.2| expressed protein [Arabidopsis thaliana] gi|29028816|gb|AAO64787.1| At4g28830 [Arabidopsis thaliana](evalue: 3e-80, score=301)">
      <seq>acagtagaagctttagcagtcatcaaaggtgaagatgaagctgaagcaattagaaagttatcttggttctcttgaacaattttcaaccccaaagattgaactagaacaatatcctactggagcccacattgcttctcgtatgctttacactgctgagaattcatttgaggatgtgaacagtaaggtggttgcagattttggatgtggttgtggtacattaggccttgctgctggccttttgggagctgaaagtgttattgggcttgatattgatgctgagtctcttgagattgcgtatgcaaatgccgatgagcttgagctagacatggattttattcaatgcgacatcagcaacttaaaatggagaggtcagattgttgaaactgtggttatgaatccaccttttggaacacggaggaaaggtgctgacatggacttcctatcttcggcgatgaaggttgcttctcaagcagtatattccttacataagaccacaactagagaacatgtgaaaagagcagccttgcgagattacaatgcaagaagtgctgaagttatatgtgagcttcggtatgatgtgccacaactgtacaaatttcacaagaaaaaggaggttgacattgctgtggacctgtggcgttttgttcctcaaagaaagcaagaaagatctctctagtattataaaaatagcaagtatacagacatgatgatgcatgtaaaattaaggaaaccccaattctgaactggagcangatggattctcatgttgttgcaagtattgntctataaaggatgtaaagagtattccataccatatctgcgtctgcaaactactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="96048" stop="99068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96348" g_stop="96441" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96442" i_stop="96557" i_length="116">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96558" g_stop="96614" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="151" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96615" i_stop="96778" i_length="164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96779" g_stop="96876" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="249" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96877" i_stop="97519" i_length="643">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97520" g_stop="97589" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="319" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97590" i_stop="97727" i_length="138">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97728" g_stop="97776" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="368" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97777" i_stop="97851" i_length="75">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97852" g_stop="97940" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="457" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97941" i_stop="98071" i_length="131">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98072" g_stop="98119" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="505" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98120" i_stop="98328" i_length="209">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98329" g_stop="98388" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98389" i_stop="98494" i_length="106">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98495" g_stop="98768" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="839" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U328655" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96348" e_stop="96441"/>
          <exon e_start="96558" e_stop="96614"/>
          <exon e_start="96779" e_stop="96876"/>
          <exon e_start="97520" e_stop="97589"/>
          <exon e_start="97728" e_stop="97776"/>
          <exon e_start="97852" e_stop="97940"/>
          <exon e_start="98072" e_stop="98119"/>
          <exon e_start="98329" e_stop="98388"/>
          <exon e_start="98495" e_stop="98768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAGAAGCTTTAGCAGTCATCAAAGGTGAAGATGAAGCTGAAGCAATTAGAAAGTTATCTTGGTTCTCTTGAACAATTTTCAACCCCAAAGGTTCCCTTTTTCTTTATCTTTATACAAAATATACATCTTTATGCACTTTATTTCCATTTTTTATGATTCTTGATTACTAATTTTAGTAAAAAAAATGATCTTTTTTGCTACAACAGATTGAACTAGAACAATATCCTACTGGAGCCCACATTGCTTCTCGTATGCTTTACACTGTATGTAAATTCTCTATATTCTCACTTTTTTTTTTCTCTTCTTGTTCATATGCAGATACCCTCTTTTTTGTGTGTTTCTTTTTGAGTTTTGTTTAAAGGTTAAAAGGGTATCTTTATTTTTAACTTTTTGGGTTTTTTTTGTGAAAAAAATTTAATCTTTTTAGGCTGAGAATTCATTTGAGGATGTGAACAGTAAGGTGGTTGCAGATTTTGGATGTGGTTGTGGTACATTAGGCCTTGCTGCTGGCCTTTTGGGAGCCGAGTATGTATCTGTTTTTTGTTTCTTTTGTTGAACTTTAGTGTTGTGTGGAGATAATATGAATGATATTTGTGCAACCCCTGTATTATTGTTTGTAGTTATATTGGAGAAGTTATCAAGGTTAGTAGGTAGTTGAGCACTATCAAGTCCCCTTATTAGTATTGTTGTTATTACTCTCCTACTATTGTATTCGTTAATTTTAGTATTACGTGTTGTTTCCATTGCTTTGATTATCGTATTGGGCTTCCGCTAGCCCTTTGAGGATTGTTACTGCTTTCATTTTTGTATTCTCTTTTTCAAACTGCTTTGAGATACGTTATTTGAGCCGAGGGTCTATTGGAAACAACCTCGCTATCTCTACGAGTTAGGGTAAGGTTTGCATACATTCTATCATTCCCCAAACCTCACTTGTGAGATTACATGGGGTGTGTTTTGTTGTGCACGATGCACCCCAACATTGTTGAAGTTAGGCATTTTGCTAAGGGGGTTTAGGATTTAGAATATATGTATAAAATTGACATTTACCCATATATACCCTTCTGGTGAAGGGTATTCAACTAACCACCCTTTGGCATACGTAGCTCCGTTCGGATTGCTAGGGTTCTCTATGTATGCTTGTTCTTGACATAGTCTTTCTTGTGAACAGAAGTGTTATTGGGCTTGATATTGATGCTGAGTCTCTTGAGATTGCGTATGCAAATGCCGATGAGCTTGAGGTATTATTCGTTTATGTGATAACATTTTTTGCTTGCAAGGTTGAGAAAGCGTTCAAGGCTGAGTCTTTTACATTGGTTTTGATGGATATATGTAGCCTTCTGTGTTTCAATACATTTCTTGAACTGTTTCATCTGCAGCTAGACATGGATTTTATTCAATGCGACATCAGCAACTTAAAATGGAGAGGTATCTTTTTCACCTCACTTTTCAGCCCCGAAAGAAAATATCTCTCTTGGCTCATTGATATTTCACTATGTGTAGGTCAGATTGTTGAAACTGTGGTTATGAATCCACCTTTTGGAACACGGAGGAAAGGTGCTGACATGGACTTCCTCTCTTCGGCGATGAAGGTACGGTGGTGCTCTCCATATAATTGGTATCCAAGATTATATTATTTGCTCAATATCCTGTTTTGTTGTTTGAATTGGCACTGCGTCCCCGTCTATTCCTAGATTAATGTGTGGTTTTATTAATGTATCAGGTTGCTTCTCAAGCAGTTTATTCCTTACATAAGACCACAACTAGAGAAGTAAGTTCTTCCATACTATCCTGCCACAGCAAAGGGATTGATTGGTGAAAAAAACTATTTGTGTAGCATCAAATAGCTTAAATATGAACTTTCTTGAGTTTATGTGCTCATAAATTAAATTGCTGTCACTTCTCGATAAAAACATGATTCTGTGCACAAAAGTGCTCTGATGTAGATCGTGATTTGGCATTTGTCTATGGTCTTAACAGCATGTGAAAAGAGCAGCCTTGCGAGATTACAATGCAATAAGTGCTGAAGTTATATGTGAGGTACACATCGAAATAATCAGATTCAGCATTTTGCATGCTATTGATGTTGAGTGAAATTCTATGTAGCCTTATGAATGTTCTGTGCCTTTATCTCTCTCAATTGTAGCTTCGGTATGATGTGCCACAACTGTACAAATTTCACAAGAAAAAGGAGGTTGACATTGCTGTGGACCTGTGGCGTTTTGTTCCTCAAAGAAAGCAAGAAAGATCTCTCTAGTATTATAAAAATAGCAAGTATACAGACATGATGATGCATGTAAAATTAAGGAAACCCCAATTCTGAACTGGAGCAGGATGGATTCTCATGTTGTTGCAAGTATTGTTCTATAAAGGATGTAAAGAGTATTCCATACCATATCTGCGTCTGCAAACTACTTTGG</genome_strand>
        <mrna_strand>ACAGTAGAAGCTTTAGCAGTCATCAAAGGTGAAGATGAAGCTGAAGCAATTAGAAAGTTATCTTGGTTCTCTTGAACAATTTTCAACCCCAAAG....................................................................................................................ATTGAACTAGAACAATATCCTACTGGAGCCCACATTGCTTCTCGTATGCTTTACACT....................................................................................................................................................................GCTGAGAATTCATTTGAGGATGTGAACAGTAAGGTGGTTGCAGATTTTGGATGTGGTTGTGGTACATTAGGCCTTGCTGCTGGCCTTTTGGGAGCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTTATTGGGCTTGATATTGATGCTGAGTCTCTTGAGATTGCGTATGCAAATGCCGATGAGCTTGAG..........................................................................................................................................CTAGACATGGATTTTATTCAATGCGACATCAGCAACTTAAAATGGAGAG...........................................................................GTCAGATTGTTGAAACTGTGGTTATGAATCCACCTTTTGGAACACGGAGGAAAGGTGCTGACATGGACTTCCTATCTTCGGCGATGAAG...................................................................................................................................GTTGCTTCTCAAGCAGTATATTCCTTACATAAGACCACAACTAGAGAA.................................................................................................................................................................................................................CATGTGAAAAGAGCAGCCTTGCGAGATTACAATGCAAGAAGTGCTGAAGTTATATGTGAG..........................................................................................................CTTCGGTATGATGTGCCACAACTGTACAAATTTCACAAGAAAAAGGAGGTTGACATTGCTGTGGACCTGTGGCGTTTTGTTCCTCAAAGAAAGCAAGAAAGATCTCTCTAGTATTATAAAAATAGCAAGTATACAGACATGATGATGCATGTAAAATTAAGGAAACCCCAATTCTGAACTGGAGCANGATGGATTCTCATGTTGTTGCAAGTATTGNTCTATAAAGGATGTAAAGAGTATTCCATACCATATCTGCGTCTGCAAACTACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316273" ref_strand="+" ref_description="SGN-U316273        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | small ubiquitin-like modifier 2 (SUMO), similar to ubiquitin-like protein SMT3 SP:P55852 from (Arabidopsis thaliana); identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family | chr5:22400795-22402151 REVERSE | Aliases: MCO15.11, MCO15_11(evalue: 2e-42, score=168) genbank/nr: gi|1668773|emb|CAA67922.1| ubiquitin-like protein [Oryza sativa] >gi|57900450|dbj|BAD87743.1| putative SUMO protein [Oryza sativa (japonica cultivar-group)] >gi|19386713|dbj|BAB86095.1| putative SUMO protein [Oryza sativa (japonica cultivar-group)] >gi|2501449|sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3 >gi|18146762|dbj|BAB82439.1| ubiquitin-related protein [Oryza sativa (japonica cultivar-group)] (evalue: 4e-41, score=169)">
      <seq>gaagaagaagaaaaaaagagggaaaaaatgtcgggagtagcaggaggggaggaagacaagaagcccgccggcgatcagtctggtcacatcaatctcaaagtcaaaagccaggacgggaatgaagtcttctttaggattaaaagaagcactcagctgaagaaattgatgaatgcttattgtgaccgacagtctgtggattttaattcaattgccttcttgtttgatggccgtcgtcttagagcagaacagactccagatgagctggagatggaagatggtgatgaaattgatgcgatgttgcatcaaaccggaggcacaactatttgagtctccttttcttttgtttctgtggatgcaagactttgtgtttcaagatggtattgaacttagtgaaatgctggttgtgtgcagctttaggacctttagactctgatgaatgagatcatgttttgcttactttatattgaacttaatcgctaatattactttatgaaagtcattatgttcttcatttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="107041" stop="83925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106741" g_stop="106631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106630" i_stop="104757" i_length="1874">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104756" g_stop="104607" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="261" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104606" i_stop="104461" i_length="146">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104460" g_stop="104188" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="534" r_length="273" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U316273" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106741" e_stop="106631"/>
          <exon e_start="104756" e_stop="104607"/>
          <exon e_start="104460" e_stop="104188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAGGTTTTTTTTTTTAATCATCTTATTAGGGTTTGTTTTCTATCGTGTATAATTTAATTAGGGTTTTGTCGATGAAGAAAATGAGGGTTGGAGTAGGTTTTATAGAGTAGCATAAGAATAATTATATGAATCTTTTCAATTTTGAAAAAAAATTGGGTTAAATAGAGAGGGGTAGATGTATATAATTGAGTTGATTAGTTTTTGGGTTGTGGGGTTGTTGATTAACAACAACAACAGTGTAATCCTACAAATTGAGGGTTTGGGGACGTTAAAGTGTATGAAAGATGTTACCTTTACCTTGGAGGTAGTGTTGATTGATTGATTTGAATGAATGATGGTTGATTATGCTTATTTACACTGTATTTTGGTTAGTGATATTCCTTTGCTACTTCTTTCCTTGGCTAATGGAAAAAAGATCCTTCTTTTACCCGCAAAGTGTGGTCTGGGAAGGGTAAAGTAGTGTATGAAGACCTTACCTTTACCTTGGAGGTTGTGCTATTGAATGGTTGATTATGCTTATTTTCACTGTATTAGGGTCAGCTATATTCCTTCGCTACTTCATTCCTTGGCTAATGGAAAAAAAAAATCTTCGTTTTACCCATAAAGTGTGGTCTTGGGAGGGTAAAGTGTATGAAGACCTCACCTTTACCCTTGGAGGTAGTGTGATTGAATGGTTGATTGTGCTTATTTTCACTGTATTAAGGTCAGGTATATTCCTTTGCTACTTCCTTCCTTTAATGGAAAAAAAAATTCTTTTTACCCATAAAGTGTGGTCTTGGGAGAGTAAAGTGTATGAAGACCTTACCTTTACCTTGGAGATAGTGTTGATTGATTGATTGATTCGAATGAATGCTTGATTATGCGTATTTACACTGCTTTAAGGTTAGCGATATTCCTTTGCTACTTCTTTCCTTGGTTAATGGAAAAAATCCTTCTTTTTACTCATTAAGTGTGGTTTGGGGTGGGTAAAGTGTATGCAGATCTTACCTTCACCTTGGAGGTAGTGTTGGATTGATTTATTAATTTGAATGAATGAATGATTATGCTTATTTACACTTAATTTGTTTTGATTTTACAATATGGTTAAAAAAGTTAAAAAATATAATAAAAAAGGATCCTTAGAAACAGAAAATAGATCGGAAGATAGAGTAAAAACATACCAACAAGTAATCCCAAATTGGGAATACTGAGGTTTTTCGACTTTGTACTAATGCTTTACAAGCTGCCAGCTAGAAAAATATTAGTTGTACATATTTAGATTTTAGTCTATTGTCTCATTACAGTTTTCTAAGTTCAGAGAGAGCCCCTATAAATTGTCATGTTGGGTCAAGGTATATTATCTTTTCTCGAGATTCACACTGTTATTTTCCGTCAATGCTAAACCAAGATTATCTTGGTCTAGCTCAACAAAATACTGCAAAAGATTATGACAATTACTGGCTTAGTTTCTCAGTCATCAACGGTAAACTTTGGTAATGCCTGTTTTAATTATCTGCCCTTAGTTGAGGTTGTTACCAAGTTGTGATCTGCCTTTGTCTTCATGATACGCCAATAACCTGTGATATACCCACTTCTTGAGCTTTTTGAAATTCACTTTCTATTGCAAGATCACCAATGTTTCTTTTTGACTATACACAGTTCATTCTGGCTATATAACTTGATATCATACGCAATTTTGTTGATTTTGTTATGTAGTTGATGAAAAAGTTACTGGCGGACCTTTTTCTTTCTTCGTCCTATCTTTTATTTCCATCCCTTACTGTTATTATGAAGGTGGGCAGCTCACTAAAATTTTCTGGAAAATAGCCTTCTCATGTATCAATGATATGGAGGAAATGACGAGAGAACTATGTATTTGACTAGTTTTCTGGTTGCAGGACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAGGTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTAAATGTGCACACACAAAAAGAGTACCAGAAGAGGGTTGTGCATCTGCTTGATGTTATCCATAACAATTGTGATTAATTTATTTCCTTCTTACAAATTTCCTCCTTTTTGCAGCTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGGGATCATGTTTTGCTTACTTCATATTGAACTTAATCGCTAATATTACTTTTTGAAAGTCATTATGTTCTTCATTTTTAATTTTCTGAAGATGACA</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAG..................................................................................................................................................CTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGAGATCATGTTTTGCTTACTTTATATTGAACTTAATCGCTAATATTACTTTATGAAAGTCATTATGTTCTTCATTTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335569" ref_strand="+" ref_description="SGN-U335569        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | small ubiquitin-like modifier 2 (SUMO), similar to ubiquitin-like protein SMT3 SP:P55852 from (Arabidopsis thaliana); identical to cDNA small ubiquitin-like modifier 2 (SUMO) GI:22652843; contains Pfam profile PF00240: Ubiquitin family | chr5:22400795-22402151 REVERSE | Aliases: MCO15.11, MCO15_11(evalue: 4e-35, score=144) genbank/nr: gi|15240471|ref|NP_200327.1| ubiquitin-like protein SMT3, putative [Arabidopsis thaliana] gi|9758113|dbj|BAB08585.1| ubiquitin-like protein SMT3-like [Arabidopsis thaliana] gi|19715611|gb|AAL91628.1| AT5g55160/MCO15_11 [Arabidopsis thaliana] gi|21360423|gb|AAM47327.1| AT5g55160/MCO15_11 [Arabidopsis thaliana] gi|21537401|gb|AAM61742.1| ubiquitin-like protein SMT3-like [Arabidopsis thaliana] gi|22652844|gb|AAN03846.1| small ubiquitin-like modifier 2 [Arabidopsis thaliana](evalue: 3e-33, score=144)">
      <seq>gcacgagaaaaaatgtcgggagtagcaggaggggaggaagacaagattctccgccggcgatcagtctggtcacatcaatgtgggagtcataagccaggacgggaatgccgcctcctttaggattaaaagaagcactcagctgaagaaattgatgaatgcttattgtgaccgacagtctgtggattttaattcaattgccttcttgtttgatggccgtcgtcttagagcagaacagactccagatgagctggagatggaagatggtgatgaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="107022" stop="104130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106726" g_stop="106631" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106630" i_stop="104757" i_length="1874">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104756" g_stop="104607" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="247" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104606" i_stop="104461" i_length="146">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104460" g_stop="104430" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="278" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U335569" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106726" e_stop="106631"/>
          <exon e_start="104756" e_stop="104607"/>
          <exon e_start="104460" e_stop="104430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGC-CCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAGGTTTTTTTTTTTAATCATCTTATTAGGGTTTGTTTTCTATCGTGTATAATTTAATTAGGGTTTTGTCGATGAAGAAAATGAGGGTTGGAGTAGGTTTTATAGAGTAGCATAAGAATAATTATATGAATCTTTTCAATTTTGAAAAAAAATTGGGTTAAATAGAGAGGGGTAGATGTATATAATTGAGTTGATTAGTTTTTGGGTTGTGGGGTTGTTGATTAACAACAACAACAGTGTAATCCTACAAATTGAGGGTTTGGGGACGTTAAAGTGTATGAAAGATGTTACCTTTACCTTGGAGGTAGTGTTGATTGATTGATTTGAATGAATGATGGTTGATTATGCTTATTTACACTGTATTTTGGTTAGTGATATTCCTTTGCTACTTCTTTCCTTGGCTAATGGAAAAAAGATCCTTCTTTTACCCGCAAAGTGTGGTCTGGGAAGGGTAAAGTAGTGTATGAAGACCTTACCTTTACCTTGGAGGTTGTGCTATTGAATGGTTGATTATGCTTATTTTCACTGTATTAGGGTCAGCTATATTCCTTCGCTACTTCATTCCTTGGCTAATGGAAAAAAAAAATCTTCGTTTTACCCATAAAGTGTGGTCTTGGGAGGGTAAAGTGTATGAAGACCTCACCTTTACCCTTGGAGGTAGTGTGATTGAATGGTTGATTGTGCTTATTTTCACTGTATTAAGGTCAGGTATATTCCTTTGCTACTTCCTTCCTTTAATGGAAAAAAAAATTCTTTTTACCCATAAAGTGTGGTCTTGGGAGAGTAAAGTGTATGAAGACCTTACCTTTACCTTGGAGATAGTGTTGATTGATTGATTGATTCGAATGAATGCTTGATTATGCGTATTTACACTGCTTTAAGGTTAGCGATATTCCTTTGCTACTTCTTTCCTTGGTTAATGGAAAAAATCCTTCTTTTTACTCATTAAGTGTGGTTTGGGGTGGGTAAAGTGTATGCAGATCTTACCTTCACCTTGGAGGTAGTGTTGGATTGATTTATTAATTTGAATGAATGAATGATTATGCTTATTTACACTTAATTTGTTTTGATTTTACAATATGGTTAAAAAAGTTAAAAAATATAATAAAAAAGGATCCTTAGAAACAGAAAATAGATCGGAAGATAGAGTAAAAACATACCAACAAGTAATCCCAAATTGGGAATACTGAGGTTTTTCGACTTTGTACTAATGCTTTACAAGCTGCCAGCTAGAAAAATATTAGTTGTACATATTTAGATTTTAGTCTATTGTCTCATTACAGTTTTCTAAGTTCAGAGAGAGCCCCTATAAATTGTCATGTTGGGTCAAGGTATATTATCTTTTCTCGAGATTCACACTGTTATTTTCCGTCAATGCTAAACCAAGATTATCTTGGTCTAGCTCAACAAAATACTGCAAAAGATTATGACAATTACTGGCTTAGTTTCTCAGTCATCAACGGTAAACTTTGGTAATGCCTGTTTTAATTATCTGCCCTTAGTTGAGGTTGTTACCAAGTTGTGATCTGCCTTTGTCTTCATGATACGCCAATAACCTGTGATATACCCACTTCTTGAGCTTTTTGAAATTCACTTTCTATTGCAAGATCACCAATGTTTCTTTTTGACTATACACAGTTCATTCTGGCTATATAACTTGATATCATACGCAATTTTGTTGATTTTGTTATGTAGTTGATGAAAAAGTTACTGGCGGACCTTTTTCTTTCTTCGTCCTATCTTTTATTTCCATCCCTTACTGTTATTATGAAGGTGGGCAGCTCACTAAAATTTTCTGGAAAATAGCCTTCTCATGTATCAATGATATGGAGGAAATGACGAGAGAACTATGTATTTGACTAGTTTTCTGGTTGCAGGACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAGGTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTAAATGTGCACACACAAAAAGAGTACCAGAAGAGGGTTGTGCATCTGCTTGATGTTATCCATAACAATTGTGATTAATTTATTTCCTTCTTACAAATTTCCTCCTTTTTGCAGCTGGAGATGGAAGATGGTGATGAAATTGATG</genome_strand>
        <mrna_strand>GCACGAGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGATTCTCCGCCGGCGATCAGTCTGGTCACATCAATGTGGGAGTCATAAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAATGCCGCCTCCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAG..................................................................................................................................................CTGGAGATGGAAGATGGTGATGAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325224" ref_strand="+" ref_description="SGN-U325224        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain | chr2:1588401-1590163 FORWARD | Aliases: T1O3.4, T1O3_4(evalue: 9e-93, score=337) genbank/nr: gi|42568937|ref|NP_178534.2| dual specificity protein phosphatase family protein [Arabidopsis thaliana] >gi|28393745|gb|AAO42283.1| putative protein phosphatase [Arabidopsis thaliana] >gi|28973409|gb|AAO64029.1| putative protein phosphatase [Arabidopsis thaliana] >gi|37813554|gb|AAR04550.1| dual-specificity phosphatase-like protein [Arabidopsis thaliana] (evalue: 7e-91, score=337)">
      <seq>aacttctattgcgatgcttcactcacaaacacactggacaaaatccagaaaaagcccagtttaaatcttgaattttactcatctgggtagttgttgattctgtgatttgatcaaattatgaggaagagggagagggaaaatccatgtggtgtttgtgggcattatcacaaatatgaagaaggtgaagtttgtgggatctgtggacatcgaatgcctgatgtatctgaaaagggttcttcagttcatgtcagtgcgtttccttctgagatcttgccggagtttctttttctagggagttatgataatgcttctcgagctgagcttctcaaaaccatcggaatttctcggattctcaatatggtacctgcttgtcagaatctttataaaaattcctttacttatcactgcctgcaagatgagcaaaatttggcttttgatgatgctatccaatttctagaacaatgtgaaaaggatagggctcgtgttcttgtgcactgcatgttaggtaaaaacaggtcggcagcaattgtaattgcttatttgatgaaaagtaaagggtggaaccttgcacagagccttcagtggacgaaagagcgaagaccctctgttgacctaaatcaagaggtctaccagcagctacaggactacgagcagaagatctttatgtcacttcagagcaagcccagccccgtcatgctagccttctcttctcccatgacatccttcaactttggcttcccaaagaccggtgatcatattcctgctccagccttcaacaatactagtgctccttctgttttctcccctcctgcttttgaagttcctccacagggattcacttttggagcttctcataatcaacatgctggctctgaaacccctttgaatgctaatccaaatccaaatggtagcgacattgccatggacttgtgaaaaatcctcaacttcaacaagtatttcaaggttatgtgagtcgctgatgccaatctacctcgtttttcagaaggttggatgtgaagtgtgagaaagtacttataaatcaactagttgtagagtttgacatgctcatatcttagggtgccatcaaaatggatttgtccaggaaatccaagtaattattgcccaatatatatgaaatactaaggaatgttttcagttgatctcttagagaaaatgatcaatatggtccttaatgtattgaggttgttttattttggttcttaatatattttaggtgattgaaaatannaaaaaaaaaaaaaaaaaaaaaaaaannaaaaaaaaaaanaaaannaaaaaaannncccggggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="118036" stop="1821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117736" g_stop="117380" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117379" i_stop="114840" i_length="2540">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114839" g_stop="114740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="457" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114739" i_stop="113750" i_length="990">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113749" g_stop="113692" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="515" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113691" i_stop="113381" i_length="311">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113380" g_stop="113274" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="622" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113273" i_stop="112772" i_length="502">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112771" g_stop="112147" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="1247" r_length="625" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112146" i_stop="107215" i_length="4932">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107214" g_stop="107198" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1264" r_length="17" r_score="0.765"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107197" i_stop="106751" i_length="447">
            <donor d_prob="0.460" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106750" g_stop="106693" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1322" r_length="58" r_score="0.552"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U325224" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117736" e_stop="117380"/>
          <exon e_start="114839" e_stop="114740"/>
          <exon e_start="113749" e_stop="113692"/>
          <exon e_start="113380" e_stop="113274"/>
          <exon e_start="112771" e_stop="112147"/>
          <exon e_start="107214" e_stop="107198"/>
          <exon e_start="106750" e_stop="106693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTATTGCGATGCTTCACTCACAAACACACTGGACAAAATCCAGAAAAAGCCCAGTTTAAATCTTGAATTTTACTCATCTGGGTAGTTGTTGATTCTGTGATTTGATCAAATTATGAGGAAGAGGGAGAGGGAAAATCCATGTGGTGTTTGTGGGCATTATCACAAATATGAAGAAGGTGAAGTTTGTGGGATCTGTGGACATCGAATGCCTGATGTATCTGAAAAGGGTTCTTCAGTTCATGTCAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTTTCTAGGGAGTTATGATAATGCTTCTCGAGCTGAGCTTCTCAAAACCATCGGAATTTCTCGGATTCTCAATGTTTGTAACCTTTTCCCTCTAATTTTATTTGTTTGTTTATTATTACTTGTTTCATTTCAATCTGTTTGTCCTGTTTTGATTTGACTCGGAATTGATTGAGTTGCTTTTGGAGTGAAATGGAACTAATATTGAGCTGAATGAATGAAGAAGGTTCATATAAAAAGCCTAAGTTATTTGTGGTTTGAGTGGAGATGGAGCTAGGATTTTCAGTTTATGGGTTGTGGATTCTAAAAAAAAATTGAGCTTTTAGACAAATTATTTATTCTTGATTCAAATGATCCCTTGGTAACTCGAACTCACAACTTTAAAGTTGAAAGTGAGGAGTGCTCACTATCCGAGCAACTCCCTCTTGTCACAAGAATTTATCTCTGCTTTGTCGCATGTTAAAGTATATGGTTTTTTGGTCCATAACTTTTTTTTAAAAAAAATTGGGAGTAAGGGAAGGAGAAATGTGTAAGGGGATTACAAGGTGGGGAATTGAACCTCACCAATAAGATGGAAATGTAGGTAGCGACCAATTGAGATACTAAGATTCCTCTTTTGGTCCATAATTAATGAAATGAAAGGTACGGATAACCTAAATCGATTAACATATAGTTCAAAGTTTCTATTTATATCCATCGAGTAATACTTATTGGTTACCCCTCCAAAATCCACTATTATTACTTATACCAGCATCTAGCAGCCTATAGAAATCAGTTTCATGTGTGGTTTGCGATCTATTGCATACCAAAAGGGATTTTACCCTGTGCGCACCCAAAGGGTAACATTAATGCTAATGTACACTCATCCTTAAATGAAATACCAACTAGTTTTTAGTGACAATAAAATTTGTCCCTGATCTACTGACTCAGATATCAGACACAGTTACCTATTGAAGAAAATGCTAAAATTGCAGAAAATAACCAATCATTTATCTGTTAGTAAGCATAGATACATTTTGGATACTAGGAAAGGAAAGACGGATATTTCTCTTTGCCATCTTATATTGTTTTCACTTTTTTTAAAAAGAAACATATAATATTTGACTCTTAGCCAGAAAAGGAAGGATGGAAATGTGAGAGTGACATGGAAGCAACTTGTGATACTTATCCAGAAAAAGAAAAACAAGAAATGAAGGAATCAACCAGCTTATGGCTACATTGAATTTGATATCTTGGTCAAGTGATTGGTATTTGGAATTCAACTTCATGTATTTCCCCTATTTATTTGAAATGATAAGCCGAACACCAATTTCCACACTAGGAACCCAATATGGCTTTTCTTCACTTCATTTTTTAGTGACTCGAACCCCTATATCGTGGTTGGAGGGCCCTTATCACTTGGCAGTCTCTCCATTGTCATTATTGATTGGGGGTGTTGATTATCTATCAAGCACTACAAGTTAATAAAGGAGATGGTGACACTTGTAGTTCCATCTTTTTTTTACATGTGATGGGTGTTCCGGGTCGTACCTCGATTATTCAACCAAGTACCTGCGTTCTCCCTCCAGTCAAAATACCAGGTAATTGTCCCACTAACGTTTAGCATATACGAAGGAATCAATTAGCTTTTTCCCTCTGCTGAATCCAAACCTGTTCACACCCTGGGTACAAAGTTCACAAATCTTTAGGGGAAACTTAGCAGTGGACTAATTGTATCCTATAACAAGTAGGATCTAATCAGGATTGTTTATATTCTCAACTGAGTTGAACTATGATCCATTAGCTATACAAAGCAATGCATTGTTCTTTAAGATTATATCCTTAGATGTAACTGAAAGATGTATAATTGTAAGAAGATATTTACGATCTAGAACAAACTGAAATTCAGTTCTTCTCTTGATTTTAATGTTCACTTGTAGTTGGTCTTAAAGTTTGTTTAGTTGGAAACATGGGTTGGCTCTTCAAATGGATGAAATAGTAGGAGAGACAATTATGTAGAATGTCGATAATAACTGACCTGAAATGGGCTTTCTGCTGCCAAACTCTTGTTATTCTTCAGGATGAACCTGAGTGATTAGGGGATGGGTTTCAGATATTCAGCTAGATGATACTCTAGTCTCTACTTTTGTGGAAAGCATGTACAGTGGGGGCTTTGCTCCTATAACTTTGATCTAATCTTTACCTTGTCAAACAAAATTCTTCTAGATTATTGATACTGTATAAGATGGAAGGAACAAAGAATAGTAATTAGTAACACAAGAAGTAACACGGTAGAGGGATAGAGCTATGCAATAAGAGCATTTAAGTTTTTCAAGGTAAGTGAGAGTGGTCCCAGTAACAACATTCATTTCTTTTCTTTCCATATCCATTTGTATGGTATTTTGCCTCCTTCGTATGAACTTGGATAAACAAACTACATATATGTACTTTTGGCTACATATAACCATAGTGGACAGTGGACACAACATATTTTTCTGTTGCATCATGTTGGATGGTTTTATTTTTACTTTCTGGTGCTTCAGAAATTTTTGAATGACACTTCAATGTGTTCTATGTGGCCCATGTTCTTGATTGTTGATAACTGGGTATTCACTTATATATTTTTTCTATGTGCAGATAGTACCTGCTTGTCAGAATCTTTATAAAAATTCCTTTACTTATCACTGCCTGCAAGATGAGCAAAATTTGGCTTTTGATGATGCTATCCAATTTCTAGGTGAGTAACATTCTCTTTACTTTGTTTTACCTAATACCTCTAAGCTTGATTAAGAGATCCATGAAACCTTTCTCTTTGCATTGTTCTTTACTACGGTCAACTATTTGCTGCTACAATGCTTTAAAGGTACCTAGTTGATTGACCAATATAGAATGAATATTGAATTATATGAATAGACTAATAATATATAGATCAACTATGCGTCAATACCAAACAAGTGGTGGTCATTTTATGTTTTCATCCACTGCTTTGCCTCTTTCGTTCACCTTCCATCTGCCTCTGAATGTACAAATTGTTGAAGATATTATTGAGTAATTAAAAGTGTTTTCTCTCTAGCAGCTTAGGCTTTTACATGAGATAGTCGCACAACTTAAACGTGGTGTCCGAGCAGGCAAAGGTACTGAGTTTGAGTCTCACCATCACCCATTATATAACGGAATTTCTAAGTGTTTGTCCCATGAAAAAGAATCGAGTTCGGACGTAAGGAGACACGTTGAGAAGCGTGCTCTCTAAGAACTTGAGCTTTTAGATTAGATTACCGCACAACCTTATCACAAATACTGTAGCGAGTAAAACATGTATATACTAGGTGTAGTTAACTACCTAGACTGTTGTCATTCTTTATTTGGAGATTCAATGGTAGCTATTTTTAGTCGACTTTTAAGCCATCTAGTAGATGATTATTACAGATTTGTTCCCCTCAGGTTCGCCTGGAAAGACAATCTTTTTTTTTAAAAATAAAATGGAAGAACAATATAGTAAGTTTTACTTTATACATGTATTGGTACATGCATTTCATATCTTTCAAGTCAACACTCCGTTTACATGTCTCTTGCTGTTGCGAAGGAAAGTCATTACTAAAGAGGATACCATCGGGCATGGTCATTGATTGCTACAGTTGAAAATCATGCTTATGACCTCAAGCTTGTTGTCAGTGATTTCTCATGTTCTATGAATGCTGACTAATCTTAGAATATTTCTTTTGTGCAGAACAATGTGAAAAGGATAGGGCTCGTGTTCTTGTGCACTGCATGTTAGGTAAAAACAGGTAGGAGTTGATTATCAATTTTGCAGCTAAACCTTTTTACAGTTTCCCTTAACTATTCTTTCTTTCGTGTTTGTGCTTTATCCTGCTCTCCTCCATTCTCTTTGTTCTTCCACAAGCAGTTTTCCCGAAATAAGGTGTAAATGTGAAACTTGTGTTCTTTTCTTCAGCTTCCTTTCAGGAACTTCGTAACATTTAGTGCTGCTACTCGATATTTTTTGGACTGCCTTTCAACTGATTGTACTTGCAGAAACCAACATTTTAGTCCACTTAAGGTTTTTATGTGTAGAACTCATACACGTGCTTTTTGATAGGTCGGCAGCAATTGTAATTGCTTATTTGATGAAAAGTAAAGGGTGGAACCTTGCACAGAGCCTTCAGTGGACGAAAGAGCGAAGACCCTCTGTTGACCTAAATCAAGGTCACACTGCTATCTTTATAAGAATTTCTTCTCCTACTTTCTTCAGTTGAAAATCTATAATATTAAGCTTGTAATTCTACATCTCAGAGAAATGCTAATATTTGAGATGACCAACCCTGGTAGTATGTGTATAGTTGAAGAGGTCGCTTAGTTAATCTTGATTTTGGATACTTCTATCATATAAAAAAATAGGGATGGGAAAAAACTGCTCAAAATTGCTGCATCATTGGCAGAACAAACTGTGACTATGCTAATAGAGATCACTCATTCTGAGTACAAGCATAGTGACTTCTAGATTTAATAGCTCAGAACTAGTTAACCTTTGTGTGAGTGAGTTGCAAGTTTGGCATACATTAGTTACTTAGTAATTTCAGTTGGATTTTTAGTTGTTCTGATTACCAGAACTCTGTTAACATTGAGTCACACAGCCTGTCTCGCCTCATTTGGATTTTTACCTGTGGCTTTGCGTCTGTATGAGACTTCTTTTTGTTTATATTTGCAGAGGTCTACCAGCAGCTACAGGACTACGAGCAGAAGATCTTTATGTCACTTCAGAGCAAGCCCAGCCCCGTCATGCTAGCCTTCTCTTCTCCCATGACATCCTTCAACTTTGGCTTCCCAAAGACCGGTGATCATATTCCTGCTCCAGCCTTCAACAATACTAGTGCTCCTTCTGTTTTCTCCCCTCCTGCTTTTGAAGTTCCTCCACAGGGATTCACTTTTGGAGCTTCTCATAATCAACATGCTGGCTCTGAAACCCCTTTGAATGCTAATCCAAATCCAAATGGTAGCGACATTGCCATGGACTTGTGAAAAATCCTCAACTTCAACAAGTATTTCAAGGTTATGTGAGTCGCTGATGCCAATCTACCTCGTTTTTCAGAAGGTTGGATGTGAAGTGTGAGAAAGTACTTATAAATCAACTAGTTGTAGAGTTTGACATGCTCATATCTTAGGGTGCCATCAAAATGGATTTGTCCAGGAAATCCAAGTAATTATTGCCCAATATATATGAAATACTAAGGAATGTTTTCAGTTGATCTCTTAGAGAAAATGATCAATATGGTCCTTAATGTATTGAGGTTGTTTTATTTTGGTTCTTAATATATTTTAGGTGATTGAAAATAGTCCTTCATGTATGGAAAAAATGTGTTCAATTCAATCTTTTACTCTAAACTTAACAATTTACCCCATAAATATAACGGTGAATTCCACATAACGATATCTCACTAGTACCAGCAACAACACCATAAACTGTTAATTGTGTGGTTAGATGTCATTCGGAACTTGTGTTGGTGGTAAGTAGTAGTATTTCATAAAATTGATCAAGATGCACGCAAGGTGACTCAAATACGATAAAAAGAAGCTAATGACACTAAGGTTCAGTGATGATCTTCAATAGATATAAGGGCATTATGTTCCTAGAGATACATGCATGACTAATTGAGTTATGAGACAACTATCAAGATTTAAACTTCAAAGATTTATCTTTTAAATTGTATCTTTTTAGTAAAATTTTACAGACATAGGAATTAGGATATGAACTAAAAATTATTGAGTTCGAATGGACCTGTATCATTTATGTCTTGGAATTTTTTTTTCTCTCCATGTTGCTAAAAAGAATATGGTATATGGCATCTATGTTTATAATCACATAGTAGGCAACTATAACAAAGTAATTGCTTTATTGAGGACCCCATATTTTCTCAAAGGAAAATTCTACCATTCAGTGTGGAGTATGCATAGGATGAGTATCAACAAGAAAAAGCACAAGTTAGGAGAACCACACACATGACATTCATCCACAAAAGATCAAAACAACTTTTCAAAGTTTCAACACTAATGAAACAAGTAAGTGTTACTTACGGATTGTGATGGAATGAATAAAATTCTTTTCTCGACTCTTGACTAAAAGTTCCGAGTTTGGATAGTGGGAATGAAACGAGTGTTCCTTTATTTGAACAATATTTATATCTAAACAATTATGTAGTGGCTCATTTAATATCCCTTTTAGTACCTTAGACATTAACTTATACACTTTCATTTGTTGCAAATTTTGAATGGTTTTTAGGTATTTATAGCATGTTATAATATAAGGTGTAAATATACTAATGATTTTAGTATAAAAGATTATCATAAGATAATACTAAGTACTTAATATTTTAGTTTCAAAATGTACTTTTAAAAGAGTACTAATTCGTATTTAACTAATAAACTTGAAATATTTTTTTTAATATTATAGAACACAACTATTTGTGTTTTTGATCAACGTCTCACGAAAAACAACTTTTACTTCTATTCAAACAACGTCAAATTCTAGATTCTTTAACTTATGGATTCTGAATCATGATCTTTTTTGCTTATTTCCAGATAGATTATTACATATATCAAATAATTTAACACAAACGCAAAAACTTAGCCAGAGCTAATGAATTCTATCGAACCCAATCTTTTAAAATAAATATTTTTGACTTCATGGACTGTCTATTAGTCATGGATAGATAATCTACAATGATTAGCTGGTTATAAATTAGTTTAATTTTCATATCATATAATTAGAAGATTCACATAAATGCTCAGCACGTTCTCATTTCATTCCTTTTTTTTCTTTTTTTTCCCTTTCTTTGGTATTATTATCTCATGTATCGGGGTCATTGACGGATCTAGAATATTCAATAAGTGGATTCGAATTTATAGAAATAGACATCTAAAGTAGCCAAAGAGGGTTTGACATCTACATATACATAAAAAAATATTTTAGTCATACATAAATGATATAATATTCCGTCGAAGGGGGTTCGAATAGTATAAAGTGGCTCCGCCCCTAACTGGGGTAGTTCAACGATGAATATTGTCTTTATAAAGTATTTTAAAAATTTCTCTATATATAGATTTGAAATACCTTGTTGACTCATTAGTTGAGACGTCCAAATTCAAATCTCAAACGCTTTATTTTTATTTGTCTAACCCTTTTAATCGAAATTTTAGATTTGTCGCTGACTCGCGTATGGATGTGAGTGGCTAATACCTTAGTGTTGGTCACGTTTGTATATTGTAATTTTTTTTTAAAAAAAAATTGTTAGGTTGAGAGGAATACAAGGAGTCCCTCTCATTCTTCACAGCACAAATTGAACTCCAATAACAAAAATTTAATTCAGAGAAAAAAAAAAGAAAAAATTTTCCAACTAATTTTTTCAACTAACTTTTTTCTCTCTTTCACTCTTCAACCAAAAACTTCTCATCAATATTGAATCCAAAAAAATTACATTTTTACAATTTCTTTTTCAAGATTTCAACAAGTTATAACAATCCTAGTGCCTCCAAATCTTGTGTTTTGTTCTGTTTGTTGATCATAATCGCGTATTTTTTTTAAAGTCGCGAATGTGATCATTTCGGTGTTTGAATCAAGAAAACCGTACGTTGAATCGATAAAAAGAGAAGGTAAATAATGCCAAGCAAGTTGAAGAAGGCAATTGGTGCAGTAAAAGATCAAACAAGCATTAGCCTTGCAAAAGTTTCAAGCAATACTTCATCAACTCTTGAAGTTGCTGTCTTAAAAGCTACAACACATGATGATGTACCTATCGATGATCGATACGTTCAAGAAGTCATCAAACTTGTGTCATCTAACAAGGCCTACGCGGCTGCCTGTGCTCGTGCCATTGGCAAACGCATAGGTAGAACGAGGAATTGGATCGTTGCCCTCAAATCATTGATGCTTGTCTTAAGAATCTTCCAAGATGGTGATCCTTACTTCCCTCGAGAGATCCTTCATGCTATGAAACGCGGAGCAAAGATCCTCAATCTTTCTAGTTTTCGCGATGATTCAAATTCTAGCCCTTGGGATTTCACAGCATTTGTTCGTACATTTGCTCTATATCTTGATGAACGTCTAGATTGTTTCCTTACTGGAAAGCTTCAAAGAAGGTATAATAATCGTGATCGAGAGAATTCAAGTATCCATAATTATAGGTCTACTGGTAGTAGTCGAAGAAGAGGTGATGAACCTGTTCGTGACATGAAACCAGTAATGCTGCTTGACAAGATATCGTATTGGCAACGATTGATTGAAAGAGCAATAGCTACAAGACCAACAGGAGCTGCTAAGACAAATCGTCTTGTCCAAATCGCGTTGTATGCTGTTGTAACAGAGAGCTTTGATCTGTACAAAGATATCTCTGATGGTCTTGCACTTGTTCTTGATAGTTTCTTTCATTTACCATATCAATCATGCGTAAACGCCTTCCAAACTTGTGTCAAAGCTGCTAAACAATTCGAGGAGATCAGTGTATTTTACTCTGTCTGTAAAACCATAGGCGTTGGCAGGACATCCGAATATCCAAGTGTGCAAACAATATCAGAGGAATTGATCGAAACGCTGCAAGAGTTTCTCAAGGATCAATCTTCGTTTCCAGCTCATACGCAAAGCAAACCACATTTGCTTCTTCCAGGCACCGGTGGTGGTTCCACAAGGACCACGAGCAGTAAACGTGATAGTTATGGTTGTCAATCAGACTTTTCTATGACCACAGGAACGACTGAGCCATACTCGGAGAAGAGTGCCAATACCTGTGGTGATTCGCGTTGCACATCATTAGAAGATCTAATAAGTGCAACAGAAACATGGAAGAGTCCTGCTAATATTTCGATTGATTTGGAGGCGTATTCAGATATTCAATTTGAGAAGCAGTTGCATGAAAAGGATGAGTCGGGGTCTACTCATTCGTTGCCTGTGTCAAACTCCATGGCTGATCTTGTATCCTTACCAGATCTGCATGAATATGATGAAGACGACGAGAAAAAACAAGAAGCTCAACTTGAACAACACCACAAACAGAATCCATCATTAGATTCTATTAGTTCAGCTAAAGGATGGGAACTCGTGTTAACTGAGGCGATCCCATCAACGTCCTTCAACGCGTTCCCTGAGCAACCAAAACCAGATCATTTGTCAAGAAACGAAACGAGAGGGGTAATAACACCATCAGCATCATTCAACGCGTTCCCTGAACAAGGACAAGTGAATGTACCTACAAACGAAGAAGAGGTTTCTTCAAGCAATGGATGGGAACTCGTACTATTCGAAAACATTCCACAAGCACAATCAACACAACCCGTTGTCCCTAGTACAACGAACAACAACAACGTTAACAGCTTCAGTTTCGCCACTTTGGATGACTTGTACAATCAGAATCAAACGCCATTTTATCCGAATAATAGCCAAAACTCACATTTCAACCATAGTACAAACAACTTTCTGTATGATCAAACTCCAGCACCTCAACACTACAATCCATTTCTTCAAGACACATCAATGGAGTTGGCTATGGTACCGGTCACGAGTGCACCTGCCCCGTACCCAACTCTGACCACGAATTCTTCGTTTTCATTTCCAACGTCTACTGACATGTTCACATCATCAGCACCAGCACCTACATTTCAAGCAACTCCAACTTTTAGTGCTCAGAATCACACTACAGGGCCAATGCAGGGTACTAATATGGACGATCCGTTCGCGACATTTTCTAGTAGTGATCAGATGTTTAATGGCATCAAGAATGAGCAGAATTTGATGCAAGAACAACAATTATGGTTGCAGAACCAAAACAAAATCATAGCTAAACATAGGGCTTGATTTATATACGTGTGTTAAATAAAAAAAATCTTGTTATGTTATACAAAATTGATTTTGTGTTAATTTACCTCCCTTTTCTTCCTTTAATTGCATGATTTTTCGATTGAGTTTGTCCGATGAATCTACGAAATGGCGAGAATTCTTGATCTCGATATCGTTTACCGATTCGAGAACTTAGTATTTGAATTGATGTCCTCTCATTGATTCCTCCTAAATTACGCAAATTGATTTATCCTAAAGATTTCATTTCAATTTAAAATAAGAATGTGTTATAGCTAAGTGAGAAATAAAACTATTTAAGGGCAAAATATTGTTGTAAAGTTAGTATTTAGGTATAATGATATCTTGTATAACTAGCATGTGAACCAAAGGACAAGTAACTCTGATATGATTTAATTCAAACATTAGGTTAATATACAATGACCAAAATAAAAAAAACAAGTAATAATTTATAGACAAAATTTAAAATTTTCCTACTTTTCTTTCTTTTTCTTTTTCGAAGTTCCTCACGTGTTGTTTGAAATCAAGATCTTTAACTAAAAATATAGGCGCAATACTCACTTCACCATTAACTTTAGTAAAAAAACTTTAAAATATAACGCATCAGTAGATCCTTAAACTTGATATCAACTACAAATAAATGTTTCACTTTTGTTATTCTTCATGGATCACCTAGACATTTTCAAAATTTATATGTCACATCAGCGTCGAGTACCTACTAGACGATGTAAATAACGAATTAAGGTGTCTACGTATGCACGTCAAGAATTAGCGCGTCTTTCTATGACAAACTTTAAACTTGATGGACCATTTTGAACTTTTTTTCTACTATATAACGATTGAACCAGACCATCAATTTACATTAATTTCATTATTCTCCATTAACAGAGAGAGAGAGAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGG</genome_strand>
        <mrna_strand>AACTTCTATTGCGATGCTTCACTCACAAACACACTGGACAAAATCCAGAAAAAGCCCAGTTTAAATCTTGAATTTTACTCATCTGGGTAGTTGTTGATTCTGTGATTTGATCAAATTATGAGGAAGAGGGAGAGGGAAAATCCATGTGGTGTTTGTGGGCATTATCACAAATATGAAGAAGGTGAAGTTTGTGGGATCTGTGGACATCGAATGCCTGATGTATCTGAAAAGGGTTCTTCAGTTCATGTCAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTTTCTAGGGAGTTATGATAATGCTTCTCGAGCTGAGCTTCTCAAAACCATCGGAATTTCTCGGATTCTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTACCTGCTTGTCAGAATCTTTATAAAAATTCCTTTACTTATCACTGCCTGCAAGATGAGCAAAATTTGGCTTTTGATGATGCTATCCAATTTCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGTGAAAAGGATAGGGCTCGTGTTCTTGTGCACTGCATGTTAGGTAAAAACAG.......................................................................................................................................................................................................................................................................................................................GTCGGCAGCAATTGTAATTGCTTATTTGATGAAAAGTAAAGGGTGGAACCTTGCACAGAGCCTTCAGTGGACGAAAGAGCGAAGACCCTCTGTTGACCTAAATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTACCAGCAGCTACAGGACTACGAGCAGAAGATCTTTATGTCACTTCAGAGCAAGCCCAGCCCCGTCATGCTAGCCTTCTCTTCTCCCATGACATCCTTCAACTTTGGCTTCCCAAAGACCGGTGATCATATTCCTGCTCCAGCCTTCAACAATACTAGTGCTCCTTCTGTTTTCTCCCCTCCTGCTTTTGAAGTTCCTCCACAGGGATTCACTTTTGGAGCTTCTCATAATCAACATGCTGGCTCTGAAACCCCTTTGAATGCTAATCCAAATCCAAATGGTAGCGACATTGCCATGGACTTGTGAAAAATCCTCAACTTCAACAAGTATTTCAAGGTTATGTGAGTCGCTGATGCCAATCTACCTCGTTTTTCAGAAGGTTGGATGTGAAGTGTGAGAAAGTACTTATAAATCAACTAGTTGTAGAGTTTGACATGCTCATATCTTAGGGTGCCATCAAAATGGATTTGTCCAGGAAATCCAAGTAATTATTGCCCAATATATATGAAATACTAAGGAATGTTTTCAGTTGATCTCTTAGAGAAAATGATCAATATGGTCCTTAATGTATTGAGGTTGTTTTATTTTGGTTCTTAATATATTTTAGGTGATTGAAAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAANNAAAAAAAAAAANAAAANNAAAAAAANNNCCCGGGGGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325764" ref_strand="+" ref_description="SGN-U325764        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, Similar to clathrin assembly protein gb:X68878 (AP180) from Rattus norvegicus; contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; EST gb:W43552 comes from this gene | chr1:1435253-1437666 REVERSE | Aliases: T7A14.11, T7A14_11(evalue: 1e-37, score=153) genbank/nr: gi|18390470|ref|NP_563726.1| clathrin protein  family [Arabidopsis thaliana] gi|25406826|pir||B86184 hypothetical protein [imported] - Arabidopsis thaliana gi|4056423|gb|AAC97997.1| Similar to clathrin assembly protein gb|X68878 (AP180) from Rattus norvegicus.  EST gb|W43552 comes from this gene. [Arabidopsis thaliana] gi|26450013|dbj|BAC42127.1| putative clathrin protein [Arabidopsis thaliana] gi|28827746|gb|AAO50717.1| putative clathrin [Arabidopsis thaliana](evalue: 8e-36, score=153)">
      <seq>tcaaatctcaaatgctttatttttatttgtctaacctttttaatcgaaattttagatttgtcgctgactcgcgtatggatgtgagtggctaataccttagtgttggtcacgtttgtatattgtaattttttttttaaaaaaaattgttaggttgagaggaatacaaggagtccctctcattcttcacagcacaaattgaactccaataacaaaaatttaattcagagaaaaaaaaaagaaaaaattttccaactaattttttcaactaacttttttctctctttcactcttcaaccaaaaacttctcatcaatcttgaatccaaaaaaattaaaaaaaaatttacatttttacaatttctttttcaaaatttcaacaagttataacaatcctagtgcctccaaatcttgtgttttgttctgtttgttgatcataatcgcgtattttttttaaagtcccaaatgtgatcatttcggtgtttgaatcaaaaaaatcgtacgttgaatcgataaaaagaaaaggtaaataatgccaagcaagttgaaaaaggcaattggtgcagtaaaagatcaaacaagcattacccttgcaaaagtttcaagcaatacttcatcaactcttgaagttgctgtcttaaaagctacaacacatgatgatgtacctatcgatgatcgatacgttcaagaagtcatcaaacttgtgtcatctaacaaggcctacgcggctgcctgtgctcgtgccattggcaaacgcataggtagaacgaggaattggatcgttgccctcaaatcattgatgcttgtcttaagaatcttccaagatggtgatccttacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="-" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="110640" stop="109216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110340" g_stop="109516" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="-" ref_id="SGN-U325764" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110340" e_stop="109516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTCAAACGCTTTATTTTTATTTGTCTAACCCTTTTAATCGAAATTTTAGATTTGTCGCTGACTCGCGTATGGATGTGAGTGGCTAATACCTTAGTGTTGGTCACGTTTGTATATTGTAATTTTTTTTTAAAAAAAAATTGTTAGGTTGAGAGGAATACAAGGAGTCCCTCTCATTCTTCACAGCACAAATTGAACTCCAATAACAAAAATTTAATTCAGAGAAAAAAAAAAGAAAAAATTTTCCAACTAATTTTTTCAACTAACTTTTTTCTCTCTTTCACTCTTCAACCAAAAACTTCTCATCAATATTGAATCC--AAAAA--AA--------TTACATTTTTACAATTTCTTTTTCAAGATTTCAACAAGTTATAACAATCCTAGTGCCTCCAAATCTTGTGTTTTGTTCTGTTTGTTGATCATAATCGCGTATTTTTTTTAAAGTCGCGAATGTGATCATTTCGGTGTTTGAATCAAGAAAACCGTACGTTGAATCGATAAAAAGAGAAGGTAAATAATGCCAAGCAAGTTGAAGAAGGCAATTGGTGCAGTAAAAGATCAAACAAGCATTAGCCTTGCAAAAGTTTCAAGCAATACTTCATCAACTCTTGAAGTTGCTGTCTTAAAAGCTACAACACATGATGATGTACCTATCGATGATCGATACGTTCAAGAAGTCATCAAACTTGTGTCATCTAACAAGGCCTACGCGGCTGCCTGTGCTCGTGCCATTGGCAAACGCATAGGTAGAACGAGGAATTGGATCGTTGCCCTCAAATCATTGATGCTTGTCTTAAGAATCTTCCAAGATGGTGATCCTTACTTCC</genome_strand>
        <mrna_strand>TCAAATCTCAAATGCTTTATTTTTATTTGTCTAACCTTTTTAATCGAAATTTTAGATTTGTCGCTGACTCGCGTATGGATGTGAGTGGCTAATACCTTAGTGTTGGTCACGTTTGTATATTGTAATTTTTTTTTTAAAAAAAATTGTTAGGTTGAGAGGAATACAAGGAGTCCCTCTCATTCTTCACAGCACAAATTGAACTCCAATAACAAAAATTTAATTCAGAGAAAAAAAAAAGAAAAAATTTTCCAACTAATTTTTTCAACTAACTTTTTTCTCTCTTTCACTCTTCAACCAAAAACTTCTCATCAATCTTGAATCCAAAAAAATTAAAAAAAAATTTACATTTTTACAATTTCTTTTTCAAAATTTCAACAAGTTATAACAATCCTAGTGCCTCCAAATCTTGTGTTTTGTTCTGTTTGTTGATCATAATCGCGTATTTTTTTTAAAGTCCCAAATGTGATCATTTCGGTGTTTGAATCAAAAAAATCGTACGTTGAATCGATAAAAAGAAAAGGTAAATAATGCCAAGCAAGTTGAAAAAGGCAATTGGTGCAGTAAAAGATCAAACAAGCATTACCCTTGCAAAAGTTTCAAGCAATACTTCATCAACTCTTGAAGTTGCTGTCTTAAAAGCTACAACACATGATGATGTACCTATCGATGATCGATACGTTCAAGAAGTCATCAAACTTGTGTCATCTAACAAGGCCTACGCGGCTGCCTGTGCTCGTGCCATTGGCAAACGCATAGGTAGAACGAGGAATTGGATCGTTGCCCTCAAATCATTGATGCTTGTCTTAAGAATCTTCCAAGATGGTGATCCTTACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331393" ref_strand="+" ref_description="SGN-U331393        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:13882096-13885468 REVERSE | Aliases: MXH1.3, MXH1_3(evalue: 1e-28, score=122) genbank/nr: gi|50947329|ref|XP_483192.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] >gi|42407752|dbj|BAD08898.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] (evalue: 2e-28, score=127)">
      <seq>ttcttcacatcttcaatttcttccccaaatttgaaaaaaaaaatctcatttttgcgattgattattctcatagatcatcgatcatcatcaatctctcgaatcagaaaagataaagaaatccatgcagcaacaggagacatgtcgattatctgttttatggagaggaacgaagtttagtctggatatggatccatctgctactctcaaatcactgggggatgaattgctgaatctcaccaacgttagagaagatacgatgcgcctcattgtgcctactaataaaagttcaagactcttgtatcctttctctgaagagcactcctacctgaaattggaggcagcatccattcttgagggtaagtctattaggatgttgggagtgcccaacgatgaagtagatgacattttacagagtgcaaaggcagacctcaggattgtgggttttgatgaagaggaaaagagattgagacgaagaatctcaaatgggcttcagagttcactaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="118449" stop="121577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118749" g_stop="118857" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118858" i_stop="120440" i_length="1583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120441" g_stop="120686" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="355" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120687" i_stop="121126" i_length="440">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121127" g_stop="121277" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="506" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U331393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118749" e_stop="118857"/>
          <exon e_start="120441" e_stop="120686"/>
          <exon e_start="121127" e_stop="121277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACATCTTCAATTTCTTCCCCAAATTTGAAAAAAAAAATCTCATTTTTGCGATTGATTATTCTCATAGATCATCGATCATCATCAATCTCTCGAATCAGAAAAGGTAAGAATTTTCAATCTTCTCATTTTTTTTAATGTAATTTTGCAGCTAGTAATTTTTAGGAACAAATTTGCTCTGAGTTTCGAACTTTCGAGGTTTATTTCGATTGATTGCGTGTTGTTTGGATGCGAAATACTTAGTTATCGGCTTTAATTGAGCTACAAGTAGCCGGAGAATCACGAGGTCTCAGGTTCAAATTTAAGCGTATAGTCAAAAATATTTGATGATTTGTTTTTCATCTGTTTAAGCTTTGTAGATAGAGATAAAGTTAGTAGGTAGCTATGATTAGTCGAGGTGTGCAAGGTATAGACCAAATACAACTTTTGTGAAAAATGAAAATTGGTCCAAGCTTGATAGAGGAGGAGAATTTGGTTAGTTTGATGAGGAATATGAAAAAAAATTAAATTTTGATGAATAATACTTATGTATACTGAAAATAAAGTGGAATAGTAAGGATTCATATAGTCGATTCAAGTATCAAGTCGTACTAGTTTTGAGGTTGCGCTGTAGTTGATGGTGATTGATAACTACAATGTTATCTATTAGGTGTTTTTTCAGTTTAGTATTTGATATTTTAGCTTAGAAATGGTTGCTGCCAAAAAAAGTAATTTTTTTAGGTGTTTGCAACAGATAGTAGCGTGTGGATATTTAAAGGATTGAAGGTGATAACTTGTTTAACAAGACGGAAATTTTATTTGAGTATTACAGATTTATTAAGGGAGGGATAAAAGTGACTTCTTCATACTGCCAATTTACATGAATAGGATTACCCACGTTCACTGGAGAAATCTATCAATCAGCTATGCTTTGACCCTATATCTGGATGGTATCGGCTATACGAATCCTCTTAATACTTCTCTCCTAAACCAAATTAGGGGTTCCGTAATTCTAGGTGATCTGAGTCTCACCTTTAACGCAACACTATCTTATAACTTTTTTCCATCCGGAGATCAAAGAAATGTGTGCTGAAATTTCTTGATGTAGAAAACTGAATTTTCACTTGACCATATTGTTAGGAAGGCTCCTTTTTCCATTGAGCCGTTGATTTTCAGTTTTTCCCGACAGAAGTTGTTATAGCAGTACTCTAGGTAGGATGGATCGGTATTTGGATTTTCTTTACCTTTTAGGGGACATGTAGTATTACTGGTGGGAATGTTGTAGTATTGTATTGTATTGTATTGTATTTTCTTCTGTACCAGCTTGGCACAAGTTTAATAGGAACGTTTACTTATCAATTAAAAAAAAAGCTCAGCGGATAACTTTAACTAAGGTCATTATGGAACCTGGATTTTGGTGTTCTGAAGCATTATTAAGAGAGGTTTCTAAAAATGCATTTTGTTGAACTACCTTCATTCCTCATGATTATCTTTAGCTGACTAGATTTTAGTTTACATGCCAAAAAAAACACAGCCTTCATCGAGCTTCTATACATAGAATTCTAAATACTGTTTGTGGCTCAGAATGCAATTCATCAAAAGAGAAATAGTTTAAAAGAAAAACTAATTGGTTGATACTTGTGGTTCTCTTATTTAATACTAGCTAAATTTTTTGTGTTTGATGATGGCTTACTTGTATGCTATTATTAGATAAAGAAATCCATGCAGCAACAGGAGACATGTCGATTATCTGTTTTATGGAGAGGAACGAAGTTTAGTCTGGATATGGATCCATCTGCTACTCTCAAATCACTGGGGGATGAATTGCTGAATCTCACCAACGTTAGAGAAGATACGATGCGCCTCATTGTGCCTACTAATAAAAGTTCAAGACTCTTGTATCCTTTCTCTGAAGAGCACTCCTACCTGAAATTGGAGGCAGCATCCATTCTTGAGGTTTTTATTTATCAGTTTATGCTCTAGTTCGTGAATTAACTTAACTAACTGTTGGACTTGCTATCTGCTTGAATTCTGGACAGGGCTTATGAACTTTTGCTCTTTTAGTCTTTGTTTTGATGGATTTGTTTGTCCTTTTGTTTTTATACACTATTGCTGATTGTTCTGCTAAAACATTCCAACATGACGCTTTATTTTTAGGGAGTTAGCTTGATAAATATCGTAAAAATCATGTAATAATTCCCACCCTTGGAATTAGGATTCGGCTTCAGAAACTGAATTGAAGGAGTTGTAGCCCCTAAGTTAGTTTTGCCAAAGGCACGTCGTGAAAAATACATTTTAGCAGTTTAGAAGGTTTGAGTGCACTTGCATTCTGAAATATATCTTCTACTTCTTTGTTAACATTATATATACAGCTGAATAAATATTTTCTGTTTCAGGGTAAGTCTATTAGGATGTTGGGAGTGCCCAACGATGAAGTAGATGACATTTTACAGAGTGCAAAGGCAGACCTCAGGATTGTGGGTTTTGATGAAGAGGAAAAGAGATTGAGACGAAGAATCTCAAATGGGCTTCAGAGTTCACTAAAAC</genome_strand>
        <mrna_strand>TTCTTCACATCTTCAATTTCTTCCCCAAATTTGAAAAAAAAAATCTCATTTTTGCGATTGATTATTCTCATAGATCATCGATCATCATCAATCTCTCGAATCAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAAATCCATGCAGCAACAGGAGACATGTCGATTATCTGTTTTATGGAGAGGAACGAAGTTTAGTCTGGATATGGATCCATCTGCTACTCTCAAATCACTGGGGGATGAATTGCTGAATCTCACCAACGTTAGAGAAGATACGATGCGCCTCATTGTGCCTACTAATAAAAGTTCAAGACTCTTGTATCCTTTCTCTGAAGAGCACTCCTACCTGAAATTGGAGGCAGCATCCATTCTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGTCTATTAGGATGTTGGGAGTGCCCAACGATGAAGTAGATGACATTTTACAGAGTGCAAAGGCAGACCTCAGGATTGTGGGTTTTGATGAAGAGGAAAAGAGATTGAGACGAAGAATCTCAAATGGGCTTCAGAGTTCACTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322423" ref_strand="-" ref_description="SGN-U322423        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:13882096-13885468 REVERSE | Aliases: MXH1.3, MXH1_3(evalue: 6e-79, score=291) genbank/nr: gi|50947329|ref|XP_483192.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] >gi|42407752|dbj|BAD08898.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-82, score=309)">
      <seq>atgaagaggaaaagagattgagacgaagaatctcaaatgggcttcagagttcactaaaacttccacaagggccttatgtctttggtgattttcggacactccatctccctggtatagagttgaatcctcctgcttcaaaagctttaaaactaatgcacaagcttgctgctgatccaggaattgttgcaatcatgaataagcatcgctggcgcgtaggaatcatgacagagatggcaccagaaggctatgttggtgttagtcctgaatgcattcttggcttcaataagaatcacggcgaggagatatcactacgtcttcgtacagatgacctcaagggttttaggaagtatgatagcatcaagaagacactcttgcatgaactttcacacatggtacattctgaacatgacatgaacttctatgctctgcttaagcagcttaatgaagaagctgataagttggactggactaaatcaagaggtcatagtttgagtggtcacagtttgcaacactatgaagaagatgaggacagcgataatataattgggttatcacataaacttggaggacaaacttcagttttcaatgctcgagcatcttcagtggttgctgcctacagccgtttagcacaggcatccaccaacccctcagaagcaactgtaatgcgtcaggcctctaatgctggtgactcagtgcaatccaatcatgtagatgttctagtggaaaaccaactgaatggtgtgaaggtagctagtgttgatgtcccatctgatgatcaaagaaaatcagaacctgatcctgatgattgcgagactggctctcctgtgaaagatgagcctcgtatggaccttgattctgatgataataagatgagaagtcttccgcctcctatggaagctaaattaagtgaagaacctgacccggatgattgctctgcagaaaaacacaatacagcaactcctacttctttggaacctgatcctgatgagtggactatggggatcgaaaagaaagtaacagatggtcaaaatagccatgtttctttcttttcgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="120918" stop="124059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121218" g_stop="121336" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121337" i_stop="122098" i_length="762">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122099" g_stop="122179" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="200" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122180" i_stop="122285" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.332" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122286" g_stop="122372" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="287" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122373" i_stop="122710" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122711" g_stop="122806" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="383" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122807" i_stop="122928" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122929" g_stop="122982" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="437" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122983" i_stop="123151" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123152" g_stop="123759" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="1045" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U322423" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1045</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322423" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121218" e_stop="121336"/>
          <exon e_start="122099" e_stop="122179"/>
          <exon e_start="122286" e_stop="122372"/>
          <exon e_start="122711" e_stop="122806"/>
          <exon e_start="122929" e_stop="122982"/>
          <exon e_start="123152" e_stop="123759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAGGAAAAGAGATTGAGACGAAGAATCTCAAATGGGCTTCAGAGTTCACTAAAACTTCCACAAGGGCCTTATGTCTTTGGTGATTTTCGGACACTCCATCTTCCTGGTATAGAGGTATAGCCAACTCTGGGAATATGTAACCACTATCATTCTCTATAGTTAAAGCTTAAAAATGCAGCCGGACGAATGAGTAAACTAATGTTTCTAATCTTTATGGATTACATGCAAAAATATATTGACATATCCCCTCTAAATAAAAGGAATAGAATAATAAAATGGATTTATTTTTAAAAAATCAAAAAAAAATTGCAAATCTGCCATTTTATTCACTAACAAATTTCATTCAATGAAGTCGTTGGACTACAAACTTTGGATTTAATGGGTATAATTTTTTACTTTTTATAATATAGTTTAGCATATACAAGCCAATAGTAGCAATAGTATGCTTCATTTTATCCTCCGTAAATAAAATTATGACTCGTATTTTCTTTCCTCGTGAATTTTATTTTAAATCGTTGAGGTTAAGGTTCTTCGCATAAGGTTAATTTGAATAAAAATTTGCTTTTTTTGATGCATGAATTCCGTTAATATGAACCTAAGTTATTTGTATTTAAATAATGGACAAAGAACAAACTTGACAAGTTTTTGAATACTTAAAGGACTAAAATCGGTAAGTTTATAGTTAAGGGACTAAAAACCGGTAAGTGTATAGTAAAGAGACCAAAATTGATAAGTTTTTGAATAGTTAAAGGACTAAATCCTTTAAGTCTATAGTTAAGGGATCATTTTAGACCTACTCACATTGTTAAGGGACTATCTATGTCATTTTCTCTTTTATTTGACGGCCAATTTATGTAGTCTTCACTTTGATTTCAGTTGAATCCTCCTGCTTCAAAAGCTTTAAAACTAATGCACAAGCTTGCTGCTGATCCAGGAATTGTTGCAATCATGAATAAGGTAAGCCTAGCAAGATTTTTCATATATCAGCTTAATTATATATAGATTACTTTGTTGATATCGGCTATCAGTTGTGGTGAACTATCGTTCATTGGACTTCTTGAAGCATCGCTGGCACGTAGGAATCATGACAGAGATGGCACCAGAAGGCTATGTTGGTGTTAGTCCTGAATGCATTCTTGGCTTCAATAAGGTGAGCAAACCCTTTCTTTCTCCGTCTCATTTTATGTGACATCCTTGGACTAGGCACGGCGTTCAAGAAAAATTTAAGACTTCTGAGATTTGTGGTCTAAAAAAAATTCTTAGATATTTGTATGGTTGAGATTCATTTCATTAAGGGTAAAAGGGAAACTTTAAAGTTAAATTGTTTCTAATTACAGTAAGGGGACATTCTTTTGGGATGGACTAAAAAGGAAAGGGTGTCACATAAAATGGGACAGAGGAAGTATTACTTTTTGATTTTCTGAGATGATAATTTTTTCAGGTTACCATTTAAAATTATCTTGATAATTTTCTGTTGTTCATATTCAGAATCACGGCGAGGAGATATCACTACGTCTTCGTACAGATGACCTCAAGGGTTTTAGGAAGTATGATAGCATCAAGAAGACACTCTTGCATGAACTTGTGGGTGGTCCTGTCTAACTCTTTGTTGTCCAACTTAAAGATATTTGAAAATCTAAGTTCGTGCTTTTGAGTTTCATGATGAATTCTGATGTGCCTCTAACTTATATTGTTTCCTTTTTCAGTCACACATGGTACATTCTGAACATGACATGAACTTCTATGCTCTGCTTAAGCAGGTAAAAGGTTATTAGTCTCTTTTTCTGTCCGTTGCTTCCTTATTCAACAGATGTTTAATCTAAAGACTGGGACGGTCCTTTTTGAGCCGCTAAACTTGATTAGTTCTGTTCATCTTTGCAATATTCTTGTTAAATGTGCAGAGTTATTAAGAATAGATCTCTCTTGCAGCTTAATGAAGAAGCTGATAAGTTGGACTGGACTAAATCAAGAGGTCATAGTTTGAGTGGTCACAGTTTGCAACACTATGAAGAAGATGAGGACAGCGATAATATAATTGGGTTATCACATAAACTTGGAGGACAAACTTCAGTTTTCAATGCTCGAGCATCTTCAGTGGTTGCTGCCTACAGCCGTTTAGCACAGGCATCCACCAACCCCTCAGAAGCAACTGTAATGCGTCAGGCCTCTAATGCTGGTGACTCAGTGCAATCCAATCATGTAGATGTTCTAGTGGAAAACCAACTGAATGGTGTGAAGGTAGCTAGTGTTGATGTCCCATCTGATGATCAAAGAAAATCAGAACCTGATCCTGATGATTGCGAGACTGGCTCTCCTGTGAAAGATGAGCCTCGTATGGACCTTGATTCTGATGATAATAAGATGAGAAGTCTTCCGCCTCCTATGGAAGCTAAATTAAGTGAAGAACCTGACCCGGATGATTGCTCTGCAGAAAAACACAATACAGCAACTCCTACTTCTTTGGAACCTGATCCTGATGAGTGGACTATGGGGATCGAAAAGAAAGTAACAGATGGTCAAAATAGCCATGTTTCTTT</genome_strand>
        <mrna_strand>ATGAAGAGGAAAAGAGATTGAGACGAAGAATCTCAAATGGGCTTCAGAGTTCACTAAAACTTCCACAAGGGCCTTATGTCTTTGGTGATTTTCGGACACTCCATCTCCCTGGTATAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCCTCCTGCTTCAAAAGCTTTAAAACTAATGCACAAGCTTGCTGCTGATCCAGGAATTGTTGCAATCATGAATAAG..........................................................................................................CATCGCTGGCGCGTAGGAATCATGACAGAGATGGCACCAGAAGGCTATGTTGGTGTTAGTCCTGAATGCATTCTTGGCTTCAATAAG..................................................................................................................................................................................................................................................................................................................................................AATCACGGCGAGGAGATATCACTACGTCTTCGTACAGATGACCTCAAGGGTTTTAGGAAGTATGATAGCATCAAGAAGACACTCTTGCATGAACTT..........................................................................................................................TCACACATGGTACATTCTGAACATGACATGAACTTCTATGCTCTGCTTAAGCAG.........................................................................................................................................................................CTTAATGAAGAAGCTGATAAGTTGGACTGGACTAAATCAAGAGGTCATAGTTTGAGTGGTCACAGTTTGCAACACTATGAAGAAGATGAGGACAGCGATAATATAATTGGGTTATCACATAAACTTGGAGGACAAACTTCAGTTTTCAATGCTCGAGCATCTTCAGTGGTTGCTGCCTACAGCCGTTTAGCACAGGCATCCACCAACCCCTCAGAAGCAACTGTAATGCGTCAGGCCTCTAATGCTGGTGACTCAGTGCAATCCAATCATGTAGATGTTCTAGTGGAAAACCAACTGAATGGTGTGAAGGTAGCTAGTGTTGATGTCCCATCTGATGATCAAAGAAAATCAGAACCTGATCCTGATGATTGCGAGACTGGCTCTCCTGTGAAAGATGAGCCTCGTATGGACCTTGATTCTGATGATAATAAGATGAGAAGTCTTCCGCCTCCTATGGAAGCTAAATTAAGTGAAGAACCTGACCCGGATGATTGCTCTGCAGAAAAACACAATACAGCAACTCCTACTTCTTTGGAACCTGATCCTGATGAGTGGACTATGGGGATCGAAAAGAAAGTAACAGATGGTCAAAATAGCCATGTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339985" ref_strand="-" ref_description="SGN-U339985        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:13882096-13885468 REVERSE | Aliases: MXH1.3, MXH1_3(evalue: 3e-15, score=79) genbank/nr: gi|50947329|ref|XP_483192.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] >gi|42407752|dbj|BAD08898.1| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-15, score=86.7)">
      <seq>tcctgtctgtgattggattcaataaagacgctataatcgacgaaactggtaaaacagaagcttatttagtcctcaaaaggaatgatccaggattattgtggcttgccaagtcttcccttgaagcctccattgcctaaaggactttgtactatatgtaaaattaatgcatttgtttgtgaaaagtctaataaaggatgaagacagttctttatgtggtatttgaacattttcctgtgttgtaaatcacattttgaaattgaccatttccttgtacatatgcatacatcaatataggcaattgaaacaattgtacttctatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="124558" stop="125484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124858" g_stop="125178" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="338"/>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U339985" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339985" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124858" e_stop="125178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTCTGTGATTGGATTCAATGAAGACGCTATTATCGACGAAACTGGTAGAACAGAAGCTTATTTAGTCCTCAAAAGGAATGATCCAGGATTATTGTGGCTTGCCAAGTCTTCCCTTGAAGCCTCCATTGCCTAGAGGACTTTGTACTATATGTAAAATTGATGCATTTGTTTGTGAAAAGTCTAATAAAGGATGAAGACAGTTCTTTATGTGGTATTTGAACATTTTCCTGTGTTGTAAATCACATTTTGAAATTGACCATTTCCTTGTACATATACATACATCCTTATAAGAAACTGAAACAATTGTACTTCTATTT</genome_strand>
        <mrna_strand>TCCTGTCTGTGATTGGATTCAATAAAGACGCTATAATCGACGAAACTGGTAAAACAGAAGCTTATTTAGTCCTCAAAAGGAATGATCCAGGATTATTGTGGCTTGCCAAGTCTTCCCTTGAAGCCTCCATTGCCTAAAGGACTTTGTACTATATGTAAAATTAATGCATTTGTTTGTGAAAAGTCTAATAAAGGATGAAGACAGTTCTTTATGTGGTATTTGAACATTTTCCTGTGTTGTAAATCACATTTTGAAATTGACCATTTCCTTGTACATATGCATACATCAATATAGGCAATTGAAACAATTGTACTTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344777" ref_strand="+" ref_description="SGN-U344777        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|46389753|dbj|BAD15107.1| hypothetical protein [Nicotiana tabacum] (evalue: 7e-22, score=107)">
      <seq>gatattcttgatatcaatttccaacatttccctcagtttcctagtgagataatgcaacttgttaatttgcgttaccttgcattggccactagtagtgaattccctccaacggtatcacaattttggagtttgcagactttaattcttcatgtgtattcaagaaactcgactttgcctcgggagatttggaagatgccaaacctcagacatcttcatattaaaccaagcatctgtttgccaagccaaaccaatgaagaacgtaacggatacaattcattggtcttgaataacctacaaacacttaccaacattacccttgcagattgtacaacagatgtcttctcaagcactcctaagttgaagaaattgggaatatgtgaaacggtcgagtatacttatccagtccagattccgtggagtgattttctttacacgtctgaaaatctgtggccttattgtagtgatacaatatcagacttgtggtcagattgccttagaaatctcgctctcctacctcaactcgaagcattaaagattgttgggttgagagcacctgtacaagtaccgaaattagcatttcatctcgatgcacttccagagaatctcaagaagttaactttgagcttcacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="130622" stop="131854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130922" g_stop="131554" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U344777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130922" e_stop="131554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCTTGATATCAATTTCCAACATTTCCCTCAGTTTCCTAGTGAGATAATGCAACTTGTTAATTTGCGTTACCTTGCATTGGCCACTAGTAGTGAATTCCCTCCAACGGTATCACAATTTTGGAGTTTGCAGACTTTAATTCTTCATGTGTATTCAAGAAACTCGACTTTGCCTCGGGAGATTTGGAAGATGCCAAACCTCAGACATCTTCATATTAAACCAAGCATCTGTTTGCCAAGCCAAACCAATGAAGAACGTAACGGATACAATTCATTGGTCTTGAATAACCTACAAACACTTACCAACATTACCCTTGCAGATTGTACAACAGATGTCTTCTCAAGCACTCCTAAGTTGAAGAAATTGGGAATATGTGAAACGGTCGAGTATACTTATCCAGTCCAGATTCCGTGGAGTGATTTTCTTTACACGTCTGAAAATCTGTGGCCTTATTGTAGTGATACAATATCAGACTTGTGGTCAGATTGCCTTAGAAATCTCGCTCTCCTACCTCAACTCGAAGCATTAAAGATTGTTGGGTTGAGAGCACCTGTACAAGTACCGAAATTAGCATTTCATCTCGATGCACTTCCAGAGAATCTCAAGAAGTTAACTTTGAGCTTCACCTAC</genome_strand>
        <mrna_strand>GATATTCTTGATATCAATTTCCAACATTTCCCTCAGTTTCCTAGTGAGATAATGCAACTTGTTAATTTGCGTTACCTTGCATTGGCCACTAGTAGTGAATTCCCTCCAACGGTATCACAATTTTGGAGTTTGCAGACTTTAATTCTTCATGTGTATTCAAGAAACTCGACTTTGCCTCGGGAGATTTGGAAGATGCCAAACCTCAGACATCTTCATATTAAACCAAGCATCTGTTTGCCAAGCCAAACCAATGAAGAACGTAACGGATACAATTCATTGGTCTTGAATAACCTACAAACACTTACCAACATTACCCTTGCAGATTGTACAACAGATGTCTTCTCAAGCACTCCTAAGTTGAAGAAATTGGGAATATGTGAAACGGTCGAGTATACTTATCCAGTCCAGATTCCGTGGAGTGATTTTCTTTACACGTCTGAAAATCTGTGGCCTTATTGTAGTGATACAATATCAGACTTGTGGTCAGATTGCCTTAGAAATCTCGCTCTCCTACCTCAACTCGAAGCATTAAAGATTGTTGGGTTGAGAGCACCTGTACAAGTACCGAAATTAGCATTTCATCTCGATGCACTTCCAGAGAATCTCAAGAAGTTAACTTTGAGCTTCACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329361" ref_strand="+" ref_description="SGN-U329361        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G20310.1 | Symbol: ATERF7 | Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box##mediated transcription together with AtSin3 and HDA19. | chr3:7084812-7086811 REVERSE | Aliases: MQC12.13, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 7, ATERF-7, ATERF7 (evalue: 3e-24, score=108) genbank/nr: gi|56384582|gb|AAV85852.1| AT-rich element binding factor 2 [Pisum sativum] (evalue: 1e-24, score=116)">
      <seq>gtatttttacgcttatcaacttcatctctatggaaaataatcataaaaaacattaatttacacaattccgatcaatttagtggccgccggcgacaatttccgacaaccccatctcctattttaaattaccggccatgccccgtcggaaaaatccggagataaatggatcaagatccgttgttttccaacagtcggtgattgagccacctcgttataggggtgtacgtaaacggccatggggtcgattttctgctgagataagggatccggtgaaaaaagctcgtaaatggctgggaacgtttgatacagcggagggtgctgcacgagcttatgatactgctgcaaggtcttttcatggagctaaagcgaaaactaacttcccagtattgcctccttatggggagaatcaatttgaaaatcttcaacaatcaaggccggcgtcgagtagtatgagtagcacggtggaatcatcgagtgatgcgcgtgcattgtgtaaaacgatgcaaccgcggattgaaattccccgccggattccgatgggggaaggtcatagtgattgtgattcgtcgtcttctgtggtggatggtaattgcattggcggcggcggtggcgatgatgatcagacgtcgtcgttttgtaaagatcctctgccgtttgatttaaactttccacctccctctgatgattttcaaatcatcacccctttgtgtttctagttaattttgatgattatgattgaaaaaaaataactttttttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="133495" stop="134857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133795" g_stop="134556" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="773"/>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U329361" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133795" e_stop="134556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTTACGCTTATCAACTTCATCTCTATGGAAAATAATCATAAAAAACATTAATTTACACAATTCCGATCAATTTAGTGGCCGCCGGCGACAATTTCCGACAACCCCATCTCCTATTTTAAATTACCGGCCATGCCCCGTCGGAAAAATCCGGAGATAAATGGATCAAGATCCGTTGTTTTCCAACAGTCGGTGATTGAGCCACCTCGTTATAGGGGTGTACGTAAACGGCCATGGGGTCGATTTTCTGCTGAGATAAGGGATCCGGTGAAAAAAGCTCGTAAATGGCTGGGAACGTTTGATACAGCGGAGGGTGCTGCACGAGCTTATGATACTGCTGCAAGGTCTTTTCATGGAGCTAAAGCAAAAACTAACTTCCCAGTATTGCCTCCTTATGGGGAGAATCAATTTGAAAATCTTCAACAATCAAGGCCGGCGTCGAGTAGTATGAGTAGCACGGTGGAATCATCGAGTGATGCGCGTGCATTGTGTAAAACGATGCAACCGCGGATTGAAATTCCCCGCCGGATTCCGATGGGGGAAGGTCATAGTGATTGTGATTCGTCGTCTTCTGTGGTGGATGGTAATTGCATTGGCGGCGGCGGTGGCGATGATGATCAGACGTCGTCGTTTTGTAAAGATCCTCTGCCGTTTGATTTAAACTTTCCACCTCCCTCTGATGATTTTCAAATCATCACCCCTTTGTGTTTCTAGTTAATTTTGATGATTATGATTGAAAAAAAAATAACTTTTTTTCTCT</genome_strand>
        <mrna_strand>GTATTTTTACGCTTATCAACTTCATCTCTATGGAAAATAATCATAAAAAACATTAATTTACACAATTCCGATCAATTTAGTGGCCGCCGGCGACAATTTCCGACAACCCCATCTCCTATTTTAAATTACCGGCCATGCCCCGTCGGAAAAATCCGGAGATAAATGGATCAAGATCCGTTGTTTTCCAACAGTCGGTGATTGAGCCACCTCGTTATAGGGGTGTACGTAAACGGCCATGGGGTCGATTTTCTGCTGAGATAAGGGATCCGGTGAAAAAAGCTCGTAAATGGCTGGGAACGTTTGATACAGCGGAGGGTGCTGCACGAGCTTATGATACTGCTGCAAGGTCTTTTCATGGAGCTAAAGCGAAAACTAACTTCCCAGTATTGCCTCCTTATGGGGAGAATCAATTTGAAAATCTTCAACAATCAAGGCCGGCGTCGAGTAGTATGAGTAGCACGGTGGAATCATCGAGTGATGCGCGTGCATTGTGTAAAACGATGCAACCGCGGATTGAAATTCCCCGCCGGATTCCGATGGGGGAAGGTCATAGTGATTGTGATTCGTCGTCTTCTGTGGTGGATGGTAATTGCATTGGCGGCGGCGGTGGCGATGATGATCAGACGTCGTCGTTTTGTAAAGATCCTCTGCCGTTTGATTTAAACTTTCCACCTCCCTCTGATGATTTTCAAATCATCACCCCTTTGTGTTTCTAGTTAATTTTGATGATTATGATTG-AAAAAAAATAACTTTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317654" ref_strand="+" ref_description="SGN-U317654        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1 regulatory protein, photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 | chr2:13985019-13990608 FORWARD | Aliases: T21L14.11, T21L14_11(evalue: 0, score=877) genbank/nr: gi|4090943|gb|AAC98912.1| COP1 homolog [Lycopersicon esculentum](evalue: 0, score=1094)">
      <seq>actgatgaacagtcaagaacttgtttggggttgaagtatagttgattcttgaaaatacccaatttgcaaaaacttgttttgggttgaggggtagttgattcttgaaaaatacccaatttgctaagaacttgtttggggttgaggggtagttgattattgaaaaatacccaattttgctaaaaagttgtttggggttgaggggtagttgattattgaaaaatacccaatttgcagttgggggtatagagggagatggtggaaagttcagttggaggggtggtgccagcagtgaagggggaggtgatgaggaggatgggggacaaagaggaggggggtagtgtaactctaagggatgaagaagttgggacagtgacagaatgggaattggacagggaattgttgtgtcctatatgtatgcagatcataaaggatgcatttttaacagcttgtgggcacagtttttgctatatgtgcatagttactcatcttcacaacaagagtgattgcccctgttgttctcattatctcactaccagtcaactctatcccaatttcctacttgacaagctattgaagaagacatctgcccgtcagatttcaaaaactgcatcccctgttgaacagtttcgtcattcattggaacagacagggttctgaagtgtcaattaaggagctggacgctctattgttgatgttgtcagagaaaaagaggaaattggaacaggaggaagcagagcgaaatatgcaaattctgctagacttcttacagatgttaaggaagcaaaaagttgatgaactcaatgaggtgcaacatgatctgcaatacatcaaagaggacttaaattcagtagagagacatagaatagacctataccgggctagggaccggtattcaatgaagctccgaatgttagcagatgatcctattgggaaaaaaccttggtcttcatcaactgataggaactttggtggtcttttctccacttcacgaaatgcacctggaggattaccgactggaaacttgacattcaaaaaggtggacagcaaagctcaaataagctctcctggaccacagagaaaagatacttcaatcagtgaactgaactcacaacatatgagtcaatcaggtctggctgtggttaggaagaagcgtgtcaatgcacagttcaatgatctccaagaatgttacttgcaaaagagacgtcaattggcaaacaaatcgcgagttaaggaagaaaaggatgcagatgtcgtacaaagagaaggttacagtgaaggactagcagattttcagtctgtacttagcactttcactcgttatagtcggttaagagtcattgctgaacttcggcatggggatctgtttcactcggccaatattgtttcaagcattgaatttgatcgggatgatgagttgtttgctactgctggagtttcacggcgtataaaagtttttgacttctcttcagttgtaaatgaacctgcagatgcacactgccctgttgttgaaatgtctacccgatctaagctgagctgcttgagttggaataagtataccaagaaccacatagctagtagtgattatgatggaatagtaactgtatgggatgtgacgactagacagagtgtgatggaatatgaagagcatgagaaacgggcttggagtgttgatttttcacgcacagaaccctcgatgcttgtatctggcagtgatgattgtaaggtcaaagtttggtgcacgaagcaggaagcaagtgttcttaatattgacatgaaggcaaatatatgctgtgtaaaatataatcctggatctagtgttcatatagcggttggctctgcggatcatcatattcattattatgacttgaggaacaccagccagccggttcacatttttagtggccatagaaaagctgtttcatatgtaaaatttttgtccaacaatgaacttgcttcagcatcaacagacagtactctacgattgtgggatgtaaaagataatttgccggttcgcacgcttagaggacatacgaatgagaagaactttgttggtctctcagtgaacaatgaattcctgtcatgtggcagtgaaacaaatgaagtattcgtgtaccataaggcgatatccaaacccgtgacttggcatagatttggttccccagacatagacgaagcggatgaagatgcaggatcttatttcatcagcgcagtgtgctggaagagcgatagccctacgatgctagctgctaatagccagggaactataaaagtgttagtccttgcagcttgatgaagttaataaagctactagttaagaatgttcaaatctttttagtggaaaaacagtgaaatggaatttcacattcaatttttcctgtagatatctattcaaccatcaagatggcatggttccccccatatttgtcaatgtattcatcattaaaacatgtaacacaagttgtagggcttggtaaatttagaagaattttacaagtttgtgtttttttttttcattgtgctgaaggacatcggatttacacaccatttcatggaataaactttactcgtattcagtgtttacaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="137894" stop="150210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138194" g_stop="138760" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138761" i_stop="141518" i_length="2758">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141519" g_stop="141596" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="645" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141597" i_stop="143585" i_length="1989">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143586" g_stop="143745" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="805" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143746" i_stop="144075" i_length="330">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144076" g_stop="144435" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="1165" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144436" i_stop="145261" i_length="826">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145262" g_stop="145419" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1166" r_stop="1323" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="145420" i_stop="145558" i_length="139">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="145559" g_stop="145624" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1389" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="145625" i_stop="145982" i_length="358">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="145983" g_stop="146061" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1390" r_stop="1468" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="146062" i_stop="147326" i_length="1265">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="147327" g_stop="147482" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1469" r_stop="1624" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="147483" i_stop="147566" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="147567" g_stop="147665" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1625" r_stop="1723" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="147666" i_stop="148092" i_length="427">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="148093" g_stop="148197" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1724" r_stop="1828" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="148198" i_stop="148767" i_length="570">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="148768" g_stop="148947" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1829" r_stop="2008" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="148948" i_stop="149098" i_length="151">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="149099" g_stop="149209" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="2009" r_stop="2119" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="149210" i_stop="149437" i_length="228">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="149438" g_stop="149905" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="2120" r_stop="2587" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2588" polyA_stop="2600"/>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U317654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138194" e_stop="138760"/>
          <exon e_start="141519" e_stop="141596"/>
          <exon e_start="143586" e_stop="143745"/>
          <exon e_start="144076" e_stop="144435"/>
          <exon e_start="145262" e_stop="145419"/>
          <exon e_start="145559" e_stop="145624"/>
          <exon e_start="145983" e_stop="146061"/>
          <exon e_start="147327" e_stop="147482"/>
          <exon e_start="147567" e_stop="147665"/>
          <exon e_start="148093" e_stop="148197"/>
          <exon e_start="148768" e_stop="148947"/>
          <exon e_start="149099" e_stop="149209"/>
          <exon e_start="149438" e_stop="149905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATGAACAGTCAAGAACTTGTTTGGGGTTGAAGTATAGTTGATTCTTGAAAATACCCAATTTGCAAAAACTTGTTTTGGGTTGAGGGGTAGTTGATTCTTGAAAAATACCCAATTTGCTAAGAACTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTTGCTAAAAAGTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTGCAGTTGGGGGTATAGAGGGAGATGGTGGAAAGTTCAGTTGGAGGGGTGGTGCCAGCAGTGAAGGGGGAGGTGATGAGGAGGATGGGGGACAAAGAGGAGGGGGGTAGTGTAACTCTAAGGGATGAAGAAGTTGGGACAGTGACAGAATGGGAATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAGGTTTGTTCAGTTTAATGTTGTTTCTTACTAGCAATTATTCATGTATTTTTTGTAGTACTTATTGAAAATGTGCCCAGTGAAGTTGAATGAACAGCTAACATAGTATAGTGATTGTTGTTTAGTATAGTGTTCATATTGACTGTTGAGCACTGAATTATAAATAGCTGAGCTGCCTTAAGTACATTGTGTTGAAGGGCATACTGCATAGTACAATCACAATTTTGTAGTATTGGCTGAAAATGTGCTCAGTGAAGTGGAGCAAATATTAGTTATTCATGTAGCCAATGTTTTATGTGAAAATGTTTGGGTGAAGAGGTGGACAACCTCCTCCGTCAATGTCCAGTGACAACTTGCTTTTGGTGTGAGATTTTGAGATAGTTCTGCCTACTATTGGTGATATTTAAGTACTATTCTTTTGTCCCTTATTTTCTTTTGGTGCAACCAAGATGTTCCTTTCTGTATTGAAGATATGGTATTTTTAGTAGAAAGCTATCACTCCCTTGGTCCCAATTTATGCTGCACACTTTCAGTTTTTGTTTGTTCTTATAAGAATTTCATCTTTCTATAATAAAAAACAATTTATCTTTAAGTTTTCATTTTACCCTTGAAATGATTTATAGCCATACAAATGTCTAAAGCTTTTTTTTTTCTTGATGAAGTAATTGGTTTAATCATAGAAGTCATCAAGAAGATGCAGAGGTATACAAATAGAGAGCAAGGTTACATTGTAGCTTCAAAAAGCAAATGTGAGACCTTATTAGCTACATTACAGGAGCACTATCTTAGGTACAGAGAGTTAACAATTGATTTGATGGGGGGCATATATGCCCAACTAAAGAAAGTAGACATTTTGCTTTAAGGGAGTGGCTGACAGTTGATTTTCCTTCAAAGCATCTACTGTTTCTTTCATTCCATAACCATTCTTCAAATTGATTTGATGGACGTGTCAACTTCCCAACTGCCCCAGGTTTCAAAAGCCTCATTGGTACTGTTTGGCATAACCCAACTAATTCCAAAAAGAGAACAGAACATGCTCGAAAAATTTGTTGCAACTAGACAGTACAGAAATCGGTGATTGTTGATCTCTTAACTCCCTGTGACACATATGGCATCTGTTGACCATCTGAATTTCATAAGGTTGTCCTGAGTCAAACATTTCTAATAGAGTACAGTCCATCTGAAACAGAATATTTTTTGGAGGTAATTTAGTTTTCCAGATCAACTTCCAAGGTTACAGATAAAGTTTGTTTTAGACCCTAAATTTCAAAAATCTTTCCTTTCTTTCATAAACTTTGTGTCAAGTCAAAACGGTGCCTTATAAATCGAGCAGAGGGAGTATATTTGTTACTTTTTGGTAGACCTCTTGTATAGAGGCACTTACTTTCCCACACATATGAAATTTATTAATTATAATAATGTATAGAAAATTGGTTATCGTTTGTTGAAAAAATTTACTATGACATATATTCTCTACTTTTTGGTACATTACTTGTATACAGGAGATTCTCCAGTATTTATTAAATTATTTACCTTATATAAAACATTGGAAGGATATCCAACAGGGACATAACAACATTTTAGTAGCTCTCTTATGATGTTACTCCCTCTGTCCCAATTGATGTGACACTTTTCATCTTTCGAGAGTAAAAGATTTTATGTTTGAATCTCGAAATCCGAGAAGTGACACATAAAATGGGACGGAGGGAGTATATGGGAATTATGTCTTTTCTTCTAATCGTACTGCACATTTTTCTCTATAGGTAGATAATCTTCTGCTGAAAAATTAAATTTTGATTTCAAAAATGTTATATTGGTTTCTTTAGAGTTTAGAGGACAAGTCTCTAACTCGATGCAAGTTTGACAATTTCAGTTTCTTTTTTCTAATTAAGAGTTAACTATTTATTATTTGAGGTAAATCCAAAATTGTTCGTATTGTGTAATCATCAATTAGGGGTCCATATTCCTTATATTTCTCATTCACTCTAACCTTTTGAAAATGGATTTGAGCTTCTAGGATCTCTTTTAAAGTGCCACAGATAAAAACGTTGAACTTATGTGAAGGTGGGTTCACCCATCTCACAAGCATACACTTATCTAGGGTAGTCCTTTGCCACTTATAATAAGTACATTAACTTACCATAATATATAATATATTTATCAAGGCTTCTTCCGCTTTTCTATCATCACTTTAATACAGAAAAGAAACATTTTAATGTGGTAAGGTTTTAATACTTCTCATAGAAAAAATGTGGTAAGCAATTAAGCAGTTAAATATGTTGTTAGCTCCCTTGGAAAACAAATGGTAAGCAAAGACGAAAGAAAGAAAAAAAAATGTGGTAAGCAATTAAGCCGTTAAATATGTTGTTTGTTCCCTAGGAAAACAAAAGTGGTCCTTCAGAGATGACTTGCACAATGCTCAAAATAAAGATTAGGATGATATCTTCCATCAGTTCAAAATGTTGGACTCATGAGACTTTAAACATATTTCAATTTTAGTTTATTGGTTTTTTCTGCATTTAAATCTCTCTGAGGATTGTTAGCAATCACTCTCATTTTATTTTCAAGTTTCTTTTCCATTTTGACTGGTAAGTTTTAAGTTTCATTCACTTTCAATTACCAGTATCTGAATGCCTTTACGATCTAATGAACTGTCGCTAAGAGATATTAATGTTGTATAATCATGAGATGGTTGCATCTTGAAATGATTTACTTCACGATGCAGCTTATTGTTAAAGGTTTCTCTGTACCACCTTTGTAGCTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAGGTGAGTCTGTTTTCTCAATCTCTAGGTGAATTCATGATGGCGTTAGTCTCCGGAGTTTGCTTTTGTTTTGACACTACTAAATTTAAGATTGTTTTATGAAGGACTCCCTGTTCAAATTTGCTAATTTTTAAATGAAAATTCGGGTTATCTGGTCTATATGTTGTTTGAGTTATTGTACTCTAATCTAACTTTTAGCTATGCTTTAATTCTTGTTTAGTTGTGGCATCTCTTATTTTGGCTCCTATATTTTAAGAAAGAGCATATTAATTTTGTTATCCAAAATTATTTTAGGGTGTAACTATTTGTTTATTATATAGTTAGGTTTGTTTAAGTTGACTCAATTATTGAGCTGTTAAAAATTTGGATTTCTGAATTCTCACAAGGCCATCCTTGTAGTGTATTGGCTTGTGATTTATGAGTAGTTCTCACTTCTTCTTAGTGCTTAATGATGGATGGCATTTTAGTATTTATTCAATTGACAAACTAATCTTTAATTAGATGCCATTCTTTTGTGGAAACAGAGATGAGATTTATCTTTGAATTGAAGTAGAGTGATACTGTCAGTCTACATATAGGTATGATATAGTTAATTGTTGAAATCACCATGGTTCACCTGTTCATTTTATGAATTTTGAGAACTACAATTTCTTGGGTACAGAAGCAGCTGGAGCAGGAAAGTAGAATATACTCTATTATGGCTAATTTGACAGATTGGAGTCATAGACCTCTTTCTTGATAAAAAAAAAAAGAAGAGAAGAAAAATGGCTTTTGAAGACACAGATTTTTTCCCCTCTAGACTGGATCACTTATGACAGTCCTACTTGCATAGACAATTGGGTCAACTTTTTACAGAAGAGTTACTGAAAAAAATAGCTTCGTACAAAAGACAAGTTTTTGTACTCTATATACGGGGTTGTAGGAGTGGGGTGGGGTCCCGCTTTTTTACTCCTTTTATACAGAGGTGGAAGTAGGGTACAACTTTATAAATAAAAAAGAAAAAAGAGGTGGAAGTAGGGTTCAAGGAGTGTGCCAAAAAAAGAAGAAGAGGGGAAGTATAGGGAATCATCTTCGGACATTGTCAAATTGGACGTTAATGAAGTAACATATTGCCTGTTGGAATATTTGGGGTGTAGTAAGTACGGTGATACATGACTGGAGATGGGATGTGTTTGCCGAGGTGAAAATAGAATGGGACTAATGAGAAATTGCAATGGCACTTGAAGGAGATGTTGTCTGATTTGTTGTGTTCATAGTCTACGGAAATGACAACAGGCTCTCTTGTTATATAGACGAATGGGTGGAGTTTGTAGAGACCAGAGAATCATATCATTTTGTAAATTCTCTACTTTTTGGCATATATCTTGTATATAACCGTTGTGGCCGTGTTATGGTGAAAAGACATGTACTTAATTTAAAAAAAAGGTTTCTGCGAAAAGAAGGGTTATTTAGTGAATTGGTAAAAATTGGTTTAAACTATCTACAATTAAAAAACAGGAAAAAAGAAGGTAAACCATGTCTATTGTGGTTTTGAAGTTGTGAATCAAAATTTCATATGGTAATTTAGACATGTAAAAATAGTTTCTTCTGATATAGTTACATTTGTAGTTCTGATTCTTCTGCACGAGTCAAATGTGGATAGCTTGAGGATGCTTCACATTCAATCCGGTAGGAGTTAAAAACCCAATAAAGCCACATTCCTTTGTCCTCCTGTTTTACTTCCTAACTTAATAACCAAGGGTCCCTTTTCTCTTCATTTTACTTTTGCCCTCAATTTAACTATGAAAGCGATTGGTGAAACTGCTTGAAATATCAGATTATGGAGCTCTGCCTTATGTCACTGCACTTAGAACCCGACATAACATTTCTAAACGCTATTTTCGCAATTCTTTTTATTGGCATGTATGGAATAGATCACACCCCTATAAATATTCAACTGTCAGTATCAGTTTTGTGCAGAAGCTTGAGATGTGACACTTGTTATATGCTTAGACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAGAGGAAATTGGAACAGGAGGAAGCAGAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAGGTATGTAATTGTTTTAATACCACCTAAAGAAAAAAAGTCAAGAAGGACAACAGAGATTTATCTTAAAGAAAAAATGTATTATGGTAGAAAAGGGTATGGCCATATGCTAGATTTTGGTTTTGCACTCTTATGTGAGTTGAGTGCCTTATGCTGGCTTTCCTACTTCTATTTTGTTAACCCTATTACTATTTGGTTCCTTCTCCCTAAATAACTTCAAGATACATTATATTATATACAAGTGGTTCTTCACTTGGGTCATTGTGTCTCCTCTTAAAGTCTTATATAGATAACAATCTGATAGCCAGTTTGTTGATTTTTGCATTTAATTAGGTGCAACATGATCTGCAATACATCAAAGAGGACTTAAATTCAGTAGAGAGACATAGAATAGACCTATACCGGGCTAGGGACCGGTATTCAATGAAGCTCCGAATGTTAGCAGATGATCCTATTGGGAAAAAACCTTGGTCTTCATCAACTGATAGGAACTTTGGTGGTCTTTTCTCCACTTCACGAAATGCACCTGGAGGATTACCGACTGGAAACTTGACATTCAAAAAGGTGGACAGCAAAGCTCAAATAAGCTCTCCTGGACCACAGAGAAAAGATACTTCAATCAGTGAACTGAACTCACAACATATGAGTCAATCAGGTCTGGCTGTGGTTAGGAAGAAGCGTGTCAATGCACAGGTTTGTGGTTGTGACATTATGTTACTCTACAAGTTCCGTAATTACTCCCTCTGTTTCATTTCACTTGACCCGTATACTAAAAATATATTTTTTGTTTTACTTGTCCCTTGTAACAAATCAAGAGAGATTTGTTATTTTCTTTCAATATTACCCTTCCCACTTGTTGGATCTCACAGGGTATGTTGTAATATTACTCCTATCATTAAGTAAATATATATAAAATAATAGTAGTCAAAGATTTCCAAAGCATAATCAATAAGGATAATTTAGTAAATAAACCCCTAATAAATACTTTCTTAAAAGGGAATGCCAAGTCAACAAATATCAAGTAAAATGAAACGAGGGGAGTCCCAGCTTACTTTTTCCTGTATTTTCATTGGTTATGAAATAGAATGATCTTTGTAATTGATCCAGTACTGGACTTGTGACTTATCGGGAAATTTGATGAGAAAGCAGACTATTCTATGACTACAGTTTGCTCAGACATTTCTTGATGCATGCTTGGTGATCAAACTATGATCTCATCGCATCCTAGGTTCTCATTAAACTGTTTTCAGCTACCCAACTTTTTCCTTTCATAATGGTGATATCACATTTGCTGATTTTGATGAAATCTATTGTGCACGAGTTTCTTGATACTTGATAAGCTATTTTCAAATCAGCTCTCAAGCTTTCTTGTTGAGAGATGTTAGCAGTACATATTCCTCTGTCAAGTTATAAGATATATGAACTGCCTTATGCCTATGTTGGTTATGGATGATCTTTCTGGCCTGCCTTTCTACTCTTTGTTATCTATTTGGTGAATGGTTTTTATGTTTGCTTACAGTTCAATGATCTCCAAGAATGTTACTTGCAAAAGAGACGTCAATTGGCAAACAAATCGCGAGTTAAGGAAGAAAAGGATGCAGATGTCGTACAAAGAGAAGGTTACAGTGAAGGACTAGCAGATTTTCAGTCTGTACTTAGCACTTTCACTCGTTATAGGTATAACTTTTTGTCTTTTATTCGCTGAACATGCTTGCTTTTAAATTATTGCACCTTTTGTCTGTTATTCGCTGAACATGCTTTTAAATTGTTACATTTGTTTCTGTTTTTAACAGTTTTAATTTTTATTCTTTAACAGTCGGTTAAGAGTCATTGCTGAACTTCGGCATGGGGATCTGTTTCACTCGGCCAATATTGTTTCAAGGCAAGTTTGGTCTTTGCATAAAATTGTTGAAAGCTTAAAGTTTTCCTTTTACTGGTTCCTGTGTTAGGTTTAAATATGGAAATTAGCTGTTAAAGAGGAGAGCCGGCGTCGTAGTTGTAGCAGATAGATCTATCCAGAGTGTAAAAATGGCTTTGCTGGAGTGCTGATTTTGTTTAGTCTTGTAAATGTTGTGTTTTTCATTAACTTCAGACCTGAATTTACAATCAGACACACAAGAAAAGAATAAAAAAATCAGAAAATTGCTTTATGATCCATCTCATTCATTTGGTTCTCTTATTTAGCTCTTGTAGGCAAACCTTATTCCAAGAGCTAAACTTTAAATATGTTCGTATTGCAGCATTGAATTTGATCGGGATGATGAGTTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCAGTGAGTTTTTAATTTATAGCTGGTTTTGTCTCTTGATAACATTGGGTGCAATGACATATCATTTGTCAATTTCTACTGTTGATATTGCAAATGAGATAGTGCAAAAGCTATTTTATTCTGAGATTGTTTTCCACCATTCGGTTACTCTTAAAAAAACTAGCTGAGATGATCCAAGTGTTGGTTGTTCAAACTCAATGTCAGTGTTAATGAGTGCTTCAGCTCAAATTCCGAATCGGCTTGAAAGCAAGGTCAATCACAACAACAACAACTACACGTCATTCCCAAACTCGTTGGGGAAAGCAAGACTCACATAAATTTAGTGAAAGTTGAACTTGGCTCAGCTTGTGGAACAAACTAACAAGCTGATAAATTGAGTTTCAGCTCGTACCTCAATTCAAGCTCGTATGTAGAGTATATATATTAACAACATATAAAAGTAAAACAATAAAATTTGGAATTAAATGGGGTGATTGGTTTTGTTCGCACTATGAACTTGAAAAATGCATTTTGAAAATAATATGCAAATTGTTACATTATTAATATTTTCAAATGAATAATTGTTGAAAAATAGATTGTTCCATGAATATAAAAGAGCAGAGCTTGAGTTATACAAGCTCAGCTCCTTTAACGTACTAAGTCAAAATTGAAAGGTGCTCAAAGACCAACAGTATAGCTAGCACATATATTACAATTCATTTACAGCTCGAACAATCACGACCTTGTTGGTATACATAATGCTTGATAGTATGTTATATGTTTATATGGAAACTTCTTCAAGGAACAAATTGTGATCACCTTCTTTCTAGAATAATTTTTTCCTTGTAAGAGTAGTGTTGTGAGTAGTGTTGCTGCAAATTTGCATGTTAGCAGGTTTCTGGTCGCAGACAGCACATTGCCTGTTTTGTGCATATTTTGTTTATAATTTTTCTATATGTTACCTGCACTACATTGATATGGTACTTATGTAGGAGAATAACACCCGACTGCTGGAGCAGATTTTGTTTCCATCAATACTTACATGAACAACCTCAAGTGGTGTTTTGCTTCTTCTAATGACACAATCCCCATAATGGCATATAGTCGAACTTTTAGTGTGCCATGATTGTACCTTCTATTTGTCTTGGTTATATTTTGGTCAAATATAATTACCATCTTAAAAAAGAACTAAAAAAATTGTGGTCAAATATTCTGGCAGAGCTCTCCTTTGCTGCTTTGCATATTGCTCTAATGATTCTGATCTGGCTTGTTATGCTTCTCCATTTCAGGTTGTAAATGAACCTGCAGATGCACACTGCCCTGTTGTTGAAATGTCTACCCGATCTAAGCTGAGCTGCTTGAGTTGGAATAAGTATACCAAGAACCACATAGCTAGTAGTGATTATGATGGAATAGTAACTGTATGGGATGTGACGACTAGACAGGTAAATCAGCACTTCTGCTAATCAGTTTTCACTGTAGACTTTTTCATCTTTCTACTACTGATACTGATCTTTTCTGGTGATTAGAGTGTGATGGAATATGAAGAGCATGAGAAACGGGCTTGGAGTGTTGATTTTTCACGCACAGAACCCTCGATGCTTGTATCTGGCAGTGATGATTGTAAGGTATTAAAGGATCACTTTTCACTTGTCAAACACAAAGCTTATCCCTACAATTGTGGTAGAGAGGCTGTTTCCAATAAACCCTTGGCTCGATAGAAAAGTGAAGAATTCAAAGCATGATAGCAAGAAACTATGACAACTAAAGAACAAGATACAAATCAAAGCATGCCTTATCTAAAAACCTTGGACTTAGATTAAAAATTTCAGTGTCTTATTATGTCTCCACATTTTTGGGCCATTACTTCATACTGAAGAAAATCTCTGGTCACTATATCCCTCCACTTTAGTTTTTGCTGTTTTGGTACTAATTTTTCTTAATGCTTTCTGGCGAGTTTATTATACAACCATGTTTTCCACTGTCTGAGCCAATAACTTGTGTACTGATCTTTTCCCTAACTTAGGTTTGTATCATCATTCTTTGCTGATGCAGGTCAAAGTTTGGTGCACGAAGCAGGAAGCAAGTGTTCTTAATATTGACATGAAGGCAAATATATGCTGTGTAAAATATAATCCTGGATCTAGTGTTCATATAGCGGTAAATGTATTAATTTTTGAAGAGCTTTCTTTTATTATTTCCACTTCTGAACTGCTGGTCAATGCATTATTTTGATGTAGTGACCTCTTTTGTTCTCTACTTCCAAGTCTCTAATTTAATACCCCTTTCTACTCATCTAGCCCATGGGTGATATAATCTGTACTTTTGCAATCTGAAAAGACCGCGACTGATATTATAGGCCTCTACTAAGATGCAATAACTGAACATGTATATACACTTGATTGCTCAAACATGCATGTGTGTCTCCTGATGCTGTTAGGTTGATGTCCATGATGAGTTTTACTAGAATGATCACGCCATTATCAAATTTGTTATGCTGTTACACATGGATACTCTTTCGTTTACTCCATTACCTATGCAGACACCATGCTTCCTTATGGCATATAACTTCATTTGTGTCCAAAAGGTTCCAGACCCTCGATCATGTGCTCCTTAAAAGTTTCTGGATGCTATTTAGAGCATGAATTTCTCATATAGCTCAAGTTCTTTGTGCTTCAACCCAAAAAAGGGAATATATCCTCATGGTGTACATCTCGTTTTATCTTGTAGGTTGGCTCTGCGGATCATCATATTCATTATTATGACTTGAGGAACACCAGCCAGCCGGTTCACATTTTTAGTGGCCATAGAAAAGCTGTTTCATATGTAAAATTTTTGTCCAACAATGAACTTGCTTCAGCATCAACAGACAGTACTCTACGATTGTGGGATGTAAAAGATAATTTGCCGGTAAGACATCTTTAAGTCTCTACTATCCTTTAGTGAGGAAACTTTTTTGCCACCAACTTGTTGATGTGGTTATGAGATTCTTCTTTGATCTTTTTCTATAAAACCAAAAAATATTCACAACAATTAACACTGTTAAAGTTTTTTTTTCTAGGTTCGCACGCTTAGAGGACATACGAATGAGAAGAACTTTGTTGGTCTCTCAGTGAACAATGAATTCCTGTCATGTGGCAGTGAAACAAATGAAGTATTCGTGTACCATAAGGTAAGCACTACTTTTTTCTTTAATAATCGTTGTGCTGGTACTGAGTAACTCTGTCCACCACCAAAGCCAAGATAGATGGGAAGAAAACACCCATTATTCATCTTTGATTAGATTTGAACTTAAGATCCTCATTGATCTCTAGGCCACGTCCTTGGGTGTAACGGCCTTTTAATCTTTGTTTAAGTGCTGATAGTATTTGATTTTAACTAATGTTTTGGGATTGTATAGGCGATATCCAAACCCGTGACTTGGCATAGATTTGGTTCCCCAGACATAGACGAAGCGGATGAAGATGCAGGATCTTATTTCATCAGCGCAGTGTGCTGGAAGAGCGATAGCCCTACGATGCTAGCTGCTAATAGCCAGGGAACTATAAAAGTGTTAGTCCTTGCAGCTTGATGAAGTTAATAAAGCTACTAGTTAAGAATGTTCAAATCTTTTTAGTGGAAAAACAGTGAAATGGAATTTCACATTCAATTTTTCCTGTAGATATCTATTCAACCATCAAGATGGCATGGTTCCCCCCATATTTGTCAATGTATTCATCATTAAAACATGTAACACAAGTTGTAGGGCTTGGTAAATTTAGAAGAATTTTACAAGTTTGTGTTTTTTTTTTTCATTGTGCTGAAGGACATCGGATTTACACACCATTTCATGGAATAAACTTTACTCGTATTCAGTGTTTACACCAAA</genome_strand>
        <mrna_strand>ACTGATGAACAGTCAAGAACTTGTTTGGGGTTGAAGTATAGTTGATTCTTGAAAATACCCAATTTGCAAAAACTTGTTTTGGGTTGAGGGGTAGTTGATTCTTGAAAAATACCCAATTTGCTAAGAACTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTTGCTAAAAAGTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTGCAGTTGGGGGTATAGAGGGAGATGGTGGAAAGTTCAGTTGGAGGGGTGGTGCCAGCAGTGAAGGGGGAGGTGATGAGGAGGATGGGGGACAAAGAGGAGGGGGGTAGTGTAACTCTAAGGGATGAAGAAGTTGGGACAGTGACAGAATGGGAATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAGAGGAAATTGGAACAGGAGGAAGCAGAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAG..........................................................................................................................................................................................................................................................................................................................................GTGCAACATGATCTGCAATACATCAAAGAGGACTTAAATTCAGTAGAGAGACATAGAATAGACCTATACCGGGCTAGGGACCGGTATTCAATGAAGCTCCGAATGTTAGCAGATGATCCTATTGGGAAAAAACCTTGGTCTTCATCAACTGATAGGAACTTTGGTGGTCTTTTCTCCACTTCACGAAATGCACCTGGAGGATTACCGACTGGAAACTTGACATTCAAAAAGGTGGACAGCAAAGCTCAAATAAGCTCTCCTGGACCACAGAGAAAAGATACTTCAATCAGTGAACTGAACTCACAACATATGAGTCAATCAGGTCTGGCTGTGGTTAGGAAGAAGCGTGTCAATGCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATGATCTCCAAGAATGTTACTTGCAAAAGAGACGTCAATTGGCAAACAAATCGCGAGTTAAGGAAGAAAAGGATGCAGATGTCGTACAAAGAGAAGGTTACAGTGAAGGACTAGCAGATTTTCAGTCTGTACTTAGCACTTTCACTCGTTATAG...........................................................................................................................................TCGGTTAAGAGTCATTGCTGAACTTCGGCATGGGGATCTGTTTCACTCGGCCAATATTGTTTCAAG......................................................................................................................................................................................................................................................................................................................................................................CATTGAATTTGATCGGGATGATGAGTTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAATGAACCTGCAGATGCACACTGCCCTGTTGTTGAAATGTCTACCCGATCTAAGCTGAGCTGCTTGAGTTGGAATAAGTATACCAAGAACCACATAGCTAGTAGTGATTATGATGGAATAGTAACTGTATGGGATGTGACGACTAGACAG....................................................................................AGTGTGATGGAATATGAAGAGCATGAGAAACGGGCTTGGAGTGTTGATTTTTCACGCACAGAACCCTCGATGCTTGTATCTGGCAGTGATGATTGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGTTTGGTGCACGAAGCAGGAAGCAAGTGTTCTTAATATTGACATGAAGGCAAATATATGCTGTGTAAAATATAATCCTGGATCTAGTGTTCATATAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCTCTGCGGATCATCATATTCATTATTATGACTTGAGGAACACCAGCCAGCCGGTTCACATTTTTAGTGGCCATAGAAAAGCTGTTTCATATGTAAAATTTTTGTCCAACAATGAACTTGCTTCAGCATCAACAGACAGTACTCTACGATTGTGGGATGTAAAAGATAATTTGCCG.......................................................................................................................................................GTTCGCACGCTTAGAGGACATACGAATGAGAAGAACTTTGTTGGTCTCTCAGTGAACAATGAATTCCTGTCATGTGGCAGTGAAACAAATGAAGTATTCGTGTACCATAAG....................................................................................................................................................................................................................................GCGATATCCAAACCCGTGACTTGGCATAGATTTGGTTCCCCAGACATAGACGAAGCGGATGAAGATGCAGGATCTTATTTCATCAGCGCAGTGTGCTGGAAGAGCGATAGCCCTACGATGCTAGCTGCTAATAGCCAGGGAACTATAAAAGTGTTAGTCCTTGCAGCTTGATGAAGTTAATAAAGCTACTAGTTAAGAATGTTCAAATCTTTTTAGTGGAAAAACAGTGAAATGGAATTTCACATTCAATTTTTCCTGTAGATATCTATTCAACCATCAAGATGGCATGGTTCCCCCCATATTTGTCAATGTATTCATCATTAAAACATGTAACACAAGTTGTAGGGCTTGGTAAATTTAGAAGAATTTTACAAGTTTGTGTTTTTTTTTTTCATTGTGCTGAAGGACATCGGATTTACACACCATTTCATGGAATAAACTTTACTCGTATTCAGTGTTTACACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336222" ref_strand="+" ref_description="SGN-U336222        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1 regulatory protein, photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 | chr2:13985019-13990608 FORWARD | Aliases: T21L14.11, T21L14_11(evalue: 1e-29, score=127) genbank/nr: gi|4090943|gb|AAC98912.1| COP1 homolog [Lycopersicon esculentum](evalue: 8e-55, score=217)">
      <seq>cgtattaacttgggacagtgacagaatgggaattggacaggcaattgctgtgtcctatatgtatgcacatcataaaggatgcatttttaacagcttgtgggcacagtttttgctatatgtgcatagttactcatcttcacaacaagagtgattgccccatgttgttctcattatctcactaccagtcaactctatcccaatttcctacttgacaagcttattgttaaaggtttctctgtaccacctttgtagctattgaacaagacatctgcccatcagatttcaaaaactgcatcccctgttgaacagtttcgtcattcattggaacagggctctgaagtgtcaattaaggagctggacgctctattgttgatgttgtcagagaaaaagcaggaaattggaacaggaggaagcaaagcgaaatatgcaaattctgctagacttcttacagatgctaacgaagcacaaagttgatgaactcaatgacgtgccaacatgatctgcaatacatcaaacaggacttaaattcactagagagacatacaatacacctataccgagctagggaccggtattcaatgaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="138245" stop="144474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138546" g_stop="138760" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138761" i_stop="141482" i_length="2722">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141483" g_stop="141596" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="330" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141597" i_stop="143589" i_length="1993">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143590" g_stop="143745" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="487" r_length="157" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143746" i_stop="144075" i_length="330">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144076" g_stop="144174" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="587" r_length="100" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U336222" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138546" e_stop="138760"/>
          <exon e_start="141483" e_stop="141596"/>
          <exon e_start="143590" e_stop="143745"/>
          <exon e_start="144076" e_stop="144174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAAGTTGGGACAGTGACAGAATGGGAATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCC-TGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAGGTTTGTTCAGTTTAATGTTGTTTCTTACTAGCAATTATTCATGTATTTTTTGTAGTACTTATTGAAAATGTGCCCAGTGAAGTTGAATGAACAGCTAACATAGTATAGTGATTGTTGTTTAGTATAGTGTTCATATTGACTGTTGAGCACTGAATTATAAATAGCTGAGCTGCCTTAAGTACATTGTGTTGAAGGGCATACTGCATAGTACAATCACAATTTTGTAGTATTGGCTGAAAATGTGCTCAGTGAAGTGGAGCAAATATTAGTTATTCATGTAGCCAATGTTTTATGTGAAAATGTTTGGGTGAAGAGGTGGACAACCTCCTCCGTCAATGTCCAGTGACAACTTGCTTTTGGTGTGAGATTTTGAGATAGTTCTGCCTACTATTGGTGATATTTAAGTACTATTCTTTTGTCCCTTATTTTCTTTTGGTGCAACCAAGATGTTCCTTTCTGTATTGAAGATATGGTATTTTTAGTAGAAAGCTATCACTCCCTTGGTCCCAATTTATGCTGCACACTTTCAGTTTTTGTTTGTTCTTATAAGAATTTCATCTTTCTATAATAAAAAACAATTTATCTTTAAGTTTTCATTTTACCCTTGAAATGATTTATAGCCATACAAATGTCTAAAGCTTTTTTTTTTCTTGATGAAGTAATTGGTTTAATCATAGAAGTCATCAAGAAGATGCAGAGGTATACAAATAGAGAGCAAGGTTACATTGTAGCTTCAAAAAGCAAATGTGAGACCTTATTAGCTACATTACAGGAGCACTATCTTAGGTACAGAGAGTTAACAATTGATTTGATGGGGGGCATATATGCCCAACTAAAGAAAGTAGACATTTTGCTTTAAGGGAGTGGCTGACAGTTGATTTTCCTTCAAAGCATCTACTGTTTCTTTCATTCCATAACCATTCTTCAAATTGATTTGATGGACGTGTCAACTTCCCAACTGCCCCAGGTTTCAAAAGCCTCATTGGTACTGTTTGGCATAACCCAACTAATTCCAAAAAGAGAACAGAACATGCTCGAAAAATTTGTTGCAACTAGACAGTACAGAAATCGGTGATTGTTGATCTCTTAACTCCCTGTGACACATATGGCATCTGTTGACCATCTGAATTTCATAAGGTTGTCCTGAGTCAAACATTTCTAATAGAGTACAGTCCATCTGAAACAGAATATTTTTTGGAGGTAATTTAGTTTTCCAGATCAACTTCCAAGGTTACAGATAAAGTTTGTTTTAGACCCTAAATTTCAAAAATCTTTCCTTTCTTTCATAAACTTTGTGTCAAGTCAAAACGGTGCCTTATAAATCGAGCAGAGGGAGTATATTTGTTACTTTTTGGTAGACCTCTTGTATAGAGGCACTTACTTTCCCACACATATGAAATTTATTAATTATAATAATGTATAGAAAATTGGTTATCGTTTGTTGAAAAAATTTACTATGACATATATTCTCTACTTTTTGGTACATTACTTGTATACAGGAGATTCTCCAGTATTTATTAAATTATTTACCTTATATAAAACATTGGAAGGATATCCAACAGGGACATAACAACATTTTAGTAGCTCTCTTATGATGTTACTCCCTCTGTCCCAATTGATGTGACACTTTTCATCTTTCGAGAGTAAAAGATTTTATGTTTGAATCTCGAAATCCGAGAAGTGACACATAAAATGGGACGGAGGGAGTATATGGGAATTATGTCTTTTCTTCTAATCGTACTGCACATTTTTCTCTATAGGTAGATAATCTTCTGCTGAAAAATTAAATTTTGATTTCAAAAATGTTATATTGGTTTCTTTAGAGTTTAGAGGACAAGTCTCTAACTCGATGCAAGTTTGACAATTTCAGTTTCTTTTTTCTAATTAAGAGTTAACTATTTATTATTTGAGGTAAATCCAAAATTGTTCGTATTGTGTAATCATCAATTAGGGGTCCATATTCCTTATATTTCTCATTCACTCTAACCTTTTGAAAATGGATTTGAGCTTCTAGGATCTCTTTTAAAGTGCCACAGATAAAAACGTTGAACTTATGTGAAGGTGGGTTCACCCATCTCACAAGCATACACTTATCTAGGGTAGTCCTTTGCCACTTATAATAAGTACATTAACTTACCATAATATATAATATATTTATCAAGGCTTCTTCCGCTTTTCTATCATCACTTTAATACAGAAAAGAAACATTTTAATGTGGTAAGGTTTTAATACTTCTCATAGAAAAAATGTGGTAAGCAATTAAGCAGTTAAATATGTTGTTAGCTCCCTTGGAAAACAAATGGTAAGCAAAGACGAAAGAAAGAAAAAAAAATGTGGTAAGCAATTAAGCCGTTAAATATGTTGTTTGTTCCCTAGGAAAACAAAAGTGGTCCTTCAGAGATGACTTGCACAATGCTCAAAATAAAGATTAGGATGATATCTTCCATCAGTTCAAAATGTTGGACTCATGAGACTTTAAACATATTTCAATTTTAGTTTATTGGTTTTTTCTGCATTTAAATCTCTCTGAGGATTGTTAGCAATCACTCTCATTTTATTTTCAAGTTTCTTTTCCATTTTGACTGGTAAGTTTTAAGTTTCATTCACTTTCAATTACCAGTATCTGAATGCCTTTACGATCTAATGAACTGTCGCTAAGAGATATTAATGTTGTATAATCATGAGATGGTTGCATCTTGAAATGATTTACTTCACGATGCAGCTTATTGTTAAAGGTTTCTCTGTACCACCTTTGTAGCTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAGGTGAGTCTGTTTTCTCAATCTCTAGGTGAATTCATGATGGCGTTAGTCTCCGGAGTTTGCTTTTGTTTTGACACTACTAAATTTAAGATTGTTTTATGAAGGACTCCCTGTTCAAATTTGCTAATTTTTAAATGAAAATTCGGGTTATCTGGTCTATATGTTGTTTGAGTTATTGTACTCTAATCTAACTTTTAGCTATGCTTTAATTCTTGTTTAGTTGTGGCATCTCTTATTTTGGCTCCTATATTTTAAGAAAGAGCATATTAATTTTGTTATCCAAAATTATTTTAGGGTGTAACTATTTGTTTATTATATAGTTAGGTTTGTTTAAGTTGACTCAATTATTGAGCTGTTAAAAATTTGGATTTCTGAATTCTCACAAGGCCATCCTTGTAGTGTATTGGCTTGTGATTTATGAGTAGTTCTCACTTCTTCTTAGTGCTTAATGATGGATGGCATTTTAGTATTTATTCAATTGACAAACTAATCTTTAATTAGATGCCATTCTTTTGTGGAAACAGAGATGAGATTTATCTTTGAATTGAAGTAGAGTGATACTGTCAGTCTACATATAGGTATGATATAGTTAATTGTTGAAATCACCATGGTTCACCTGTTCATTTTATGAATTTTGAGAACTACAATTTCTTGGGTACAGAAGCAGCTGGAGCAGGAAAGTAGAATATACTCTATTATGGCTAATTTGACAGATTGGAGTCATAGACCTCTTTCTTGATAAAAAAAAAAAGAAGAGAAGAAAAATGGCTTTTGAAGACACAGATTTTTTCCCCTCTAGACTGGATCACTTATGACAGTCCTACTTGCATAGACAATTGGGTCAACTTTTTACAGAAGAGTTACTGAAAAAAATAGCTTCGTACAAAAGACAAGTTTTTGTACTCTATATACGGGGTTGTAGGAGTGGGGTGGGGTCCCGCTTTTTTACTCCTTTTATACAGAGGTGGAAGTAGGGTACAACTTTATAAATAAAAAAGAAAAAAGAGGTGGAAGTAGGGTTCAAGGAGTGTGCCAAAAAAAGAAGAAGAGGGGAAGTATAGGGAATCATCTTCGGACATTGTCAAATTGGACGTTAATGAAGTAACATATTGCCTGTTGGAATATTTGGGGTGTAGTAAGTACGGTGATACATGACTGGAGATGGGATGTGTTTGCCGAGGTGAAAATAGAATGGGACTAATGAGAAATTGCAATGGCACTTGAAGGAGATGTTGTCTGATTTGTTGTGTTCATAGTCTACGGAAATGACAACAGGCTCTCTTGTTATATAGACGAATGGGTGGAGTTTGTAGAGACCAGAGAATCATATCATTTTGTAAATTCTCTACTTTTTGGCATATATCTTGTATATAACCGTTGTGGCCGTGTTATGGTGAAAAGACATGTACTTAATTTAAAAAAAAGGTTTCTGCGAAAAGAAGGGTTATTTAGTGAATTGGTAAAAATTGGTTTAAACTATCTACAATTAAAAAACAGGAAAAAAGAAGGTAAACCATGTCTATTGTGGTTTTGAAGTTGTGAATCAAAATTTCATATGGTAATTTAGACATGTAAAAATAGTTTCTTCTGATATAGTTACATTTGTAGTTCTGATTCTTCTGCACGAGTCAAATGTGGATAGCTTGAGGATGCTTCACATTCAATCCGGTAGGAGTTAAAAACCCAATAAAGCCACATTCCTTTGTCCTCCTGTTTTACTTCCTAACTTAATAACCAAGGGTCCCTTTTCTCTTCATTTTACTTTTGCCCTCAATTTAACTATGAAAGCGATTGGTGAAACTGCTTGAAATATCAGATTATGGAGCTCTGCCTTATGTCACTGCACTTAGAACCCGACATAACATTTCTAAACGCTATTTTCGCAATTCTTTTTATTGGCATGTATGGAATAGATCACACCCCTATAAATATTCAACTGTCAGTATCAGTTTTGTGCAGAAGCTTGAGATGTGACACTTGTTATATGCTTAGACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAG-AGGAAATTGGAACAGGAGGAAGCAGAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAGGTATGTAATTGTTTTAATACCACCTAAAGAAAAAAAGTCAAGAAGGACAACAGAGATTTATCTTAAAGAAAAAATGTATTATGGTAGAAAAGGGTATGGCCATATGCTAGATTTTGGTTTTGCACTCTTATGTGAGTTGAGTGCCTTATGCTGGCTTTCCTACTTCTATTTTGTTAACCCTATTACTATTTGGTTCCTTCTCCCTAAATAACTTCAAGATACATTATATTATATACAAGTGGTTCTTCACTTGGGTCATTGTGTCTCCTCTTAAAGTCTTATATAGATAACAATCTGATAGCCAGTTTGTTGATTTTTGCATTTAATTAGGTG-CAACATGATCTGCAATACATCAAAGAGGACTTAAATTCAGTAGAGAGACATAGAATAGACCTATACCGGGCTAGGGACCGGTATTCAATGAAGCTC</genome_strand>
        <mrna_strand>CGTATTAACTTGGGACAGTGACAGAATGGGAATTGGACAGGCAATTGCTGTGTCCTATATGTATGCACATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCATGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTGTTAAAGGTTTCTCTGTACCACCTTTGTAGCTATTGAACAAGACATCTGCCCATCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAGCAGGAAATTGGAACAGGAGGAAGCAAAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGCTAACGAAGCACAAAGTTGATGAACTCAATGAC..........................................................................................................................................................................................................................................................................................................................................GTGCCAACATGATCTGCAATACATCAAACAGGACTTAAATTCACTAGAGAGACATACAATACACCTATACCGAGCTAGGGACCGGTATTCAATGAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336221" ref_strand="+" ref_description="SGN-U336221        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1 regulatory protein, photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 | chr2:13985019-13990608 FORWARD | Aliases: T21L14.11, T21L14_11(evalue: 1e-28, score=124) genbank/nr: gi|4090943|gb|AAC98912.1| COP1 homolog [Lycopersicon esculentum](evalue: 6e-31, score=138)">
      <seq>catttgacagggaattgttgtgtcctatatgtatgcagatcataaaggatgcatttttaacagcttgtgggcacagtttttgctatatgtgcatagttactcatcttcacaacaagagtgattgcccctgttgttctcattatctcactaccagtcaactctatcccaatttcctacttgacaagtaattggtttaatcatagaagtcatcaagaagatgcagaggtatacaaatagagagcaaggttacattgtagcttcaaaaagcaaatgtgagaccttattagctacattacaggagcactatcttaggtacagagagttaacaattgatttgatggggggcatatatgcccaactaaagaaagtagacattttgctttaagggagtggctgacagttgattttccttcaaagcatctactgtttctttcattccataaccattcttcaaattgatttgatggacgtgtcaacttcccaactgccccaggtttcaaaagcctcattggtactgtttggcataacccaactaattccaaaaagagaacagaacatgctcgaaaaatttgttgcaactagacagtacagaaatcggtgattgttgatctcttaactccctgtgacacatatggcatctgttgaccatctgaatttcataaggttgtcctgagtcaaacatttctaatagagtacagtccatctgaaacagaatattttttggagctattgaagaagacatctgcccatcagatttcaaaaactgcatcccctgttgaacagtttcgtcattcattggaacagacagggttctgaagtgtcaattaaggagctggacgctctattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="138277" stop="143931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138576" g_stop="138760" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138761" i_stop="139419" i_length="659">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139420" g_stop="139960" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="726" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139961" i_stop="141518" i_length="1558">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141519" g_stop="141596" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="804" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141597" i_stop="143585" i_length="1989">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143586" g_stop="143631" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="850" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U336221" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138576" e_stop="138760"/>
          <exon e_start="139420" e_stop="139960"/>
          <exon e_start="141519" e_stop="141596"/>
          <exon e_start="143586" e_stop="143631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAGGTTTGTTCAGTTTAATGTTGTTTCTTACTAGCAATTATTCATGTATTTTTTGTAGTACTTATTGAAAATGTGCCCAGTGAAGTTGAATGAACAGCTAACATAGTATAGTGATTGTTGTTTAGTATAGTGTTCATATTGACTGTTGAGCACTGAATTATAAATAGCTGAGCTGCCTTAAGTACATTGTGTTGAAGGGCATACTGCATAGTACAATCACAATTTTGTAGTATTGGCTGAAAATGTGCTCAGTGAAGTGGAGCAAATATTAGTTATTCATGTAGCCAATGTTTTATGTGAAAATGTTTGGGTGAAGAGGTGGACAACCTCCTCCGTCAATGTCCAGTGACAACTTGCTTTTGGTGTGAGATTTTGAGATAGTTCTGCCTACTATTGGTGATATTTAAGTACTATTCTTTTGTCCCTTATTTTCTTTTGGTGCAACCAAGATGTTCCTTTCTGTATTGAAGATATGGTATTTTTAGTAGAAAGCTATCACTCCCTTGGTCCCAATTTATGCTGCACACTTTCAGTTTTTGTTTGTTCTTATAAGAATTTCATCTTTCTATAATAAAAAACAATTTATCTTTAAGTTTTCATTTTACCCTTGAAATGATTTATAGCCATACAAATGTCTAAAGCTTTTTTTTTTCTTGATGAAGTAATTGGTTTAATCATAGAAGTCATCAAGAAGATGCAGAGGTATACAAATAGAGAGCAAGGTTACATTGTAGCTTCAAAAAGCAAATGTGAGACCTTATTAGCTACATTACAGGAGCACTATCTTAGGTACAGAGAGTTAACAATTGATTTGATGGGGGGCATATATGCCCAACTAAAGAAAGTAGACATTTTGCTTTAAGGGAGTGGCTGACAGTTGATTTTCCTTCAAAGCATCTACTGTTTCTTTCATTCCATAACCATTCTTCAAATTGATTTGATGGACGTGTCAACTTCCCAACTGCCCCAGGTTTCAAAAGCCTCATTGGTACTGTTTGGCATAACCCAACTAATTCCAAAAAGAGAACAGAACATGCTCGAAAAATTTGTTGCAACTAGACAGTACAGAAATCGGTGATTGTTGATCTCTTAACTCCCTGTGACACATATGGCATCTGTTGACCATCTGAATTTCATAAGGTTGTCCTGAGTCAAACATTTCTAATAGAGTACAGTCCATCTGAAACAGAATATTTTTTGGAGGTAATTTAGTTTTCCAGATCAACTTCCAAGGTTACAGATAAAGTTTGTTTTAGACCCTAAATTTCAAAAATCTTTCCTTTCTTTCATAAACTTTGTGTCAAGTCAAAACGGTGCCTTATAAATCGAGCAGAGGGAGTATATTTGTTACTTTTTGGTAGACCTCTTGTATAGAGGCACTTACTTTCCCACACATATGAAATTTATTAATTATAATAATGTATAGAAAATTGGTTATCGTTTGTTGAAAAAATTTACTATGACATATATTCTCTACTTTTTGGTACATTACTTGTATACAGGAGATTCTCCAGTATTTATTAAATTATTTACCTTATATAAAACATTGGAAGGATATCCAACAGGGACATAACAACATTTTAGTAGCTCTCTTATGATGTTACTCCCTCTGTCCCAATTGATGTGACACTTTTCATCTTTCGAGAGTAAAAGATTTTATGTTTGAATCTCGAAATCCGAGAAGTGACACATAAAATGGGACGGAGGGAGTATATGGGAATTATGTCTTTTCTTCTAATCGTACTGCACATTTTTCTCTATAGGTAGATAATCTTCTGCTGAAAAATTAAATTTTGATTTCAAAAATGTTATATTGGTTTCTTTAGAGTTTAGAGGACAAGTCTCTAACTCGATGCAAGTTTGACAATTTCAGTTTCTTTTTTCTAATTAAGAGTTAACTATTTATTATTTGAGGTAAATCCAAAATTGTTCGTATTGTGTAATCATCAATTAGGGGTCCATATTCCTTATATTTCTCATTCACTCTAACCTTTTGAAAATGGATTTGAGCTTCTAGGATCTCTTTTAAAGTGCCACAGATAAAAACGTTGAACTTATGTGAAGGTGGGTTCACCCATCTCACAAGCATACACTTATCTAGGGTAGTCCTTTGCCACTTATAATAAGTACATTAACTTACCATAATATATAATATATTTATCAAGGCTTCTTCCGCTTTTCTATCATCACTTTAATACAGAAAAGAAACATTTTAATGTGGTAAGGTTTTAATACTTCTCATAGAAAAAATGTGGTAAGCAATTAAGCAGTTAAATATGTTGTTAGCTCCCTTGGAAAACAAATGGTAAGCAAAGACGAAAGAAAGAAAAAAAAATGTGGTAAGCAATTAAGCCGTTAAATATGTTGTTTGTTCCCTAGGAAAACAAAAGTGGTCCTTCAGAGATGACTTGCACAATGCTCAAAATAAAGATTAGGATGATATCTTCCATCAGTTCAAAATGTTGGACTCATGAGACTTTAAACATATTTCAATTTTAGTTTATTGGTTTTTTCTGCATTTAAATCTCTCTGAGGATTGTTAGCAATCACTCTCATTTTATTTTCAAGTTTCTTTTCCATTTTGACTGGTAAGTTTTAAGTTTCATTCACTTTCAATTACCAGTATCTGAATGCCTTTACGATCTAATGAACTGTCGCTAAGAGATATTAATGTTGTATAATCATGAGATGGTTGCATCTTGAAATGATTTACTTCACGATGCAGCTTATTGTTAAAGGTTTCTCTGTACCACCTTTGTAGCTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAGGTGAGTCTGTTTTCTCAATCTCTAGGTGAATTCATGATGGCGTTAGTCTCCGGAGTTTGCTTTTGTTTTGACACTACTAAATTTAAGATTGTTTTATGAAGGACTCCCTGTTCAAATTTGCTAATTTTTAAATGAAAATTCGGGTTATCTGGTCTATATGTTGTTTGAGTTATTGTACTCTAATCTAACTTTTAGCTATGCTTTAATTCTTGTTTAGTTGTGGCATCTCTTATTTTGGCTCCTATATTTTAAGAAAGAGCATATTAATTTTGTTATCCAAAATTATTTTAGGGTGTAACTATTTGTTTATTATATAGTTAGGTTTGTTTAAGTTGACTCAATTATTGAGCTGTTAAAAATTTGGATTTCTGAATTCTCACAAGGCCATCCTTGTAGTGTATTGGCTTGTGATTTATGAGTAGTTCTCACTTCTTCTTAGTGCTTAATGATGGATGGCATTTTAGTATTTATTCAATTGACAAACTAATCTTTAATTAGATGCCATTCTTTTGTGGAAACAGAGATGAGATTTATCTTTGAATTGAAGTAGAGTGATACTGTCAGTCTACATATAGGTATGATATAGTTAATTGTTGAAATCACCATGGTTCACCTGTTCATTTTATGAATTTTGAGAACTACAATTTCTTGGGTACAGAAGCAGCTGGAGCAGGAAAGTAGAATATACTCTATTATGGCTAATTTGACAGATTGGAGTCATAGACCTCTTTCTTGATAAAAAAAAAAAGAAGAGAAGAAAAATGGCTTTTGAAGACACAGATTTTTTCCCCTCTAGACTGGATCACTTATGACAGTCCTACTTGCATAGACAATTGGGTCAACTTTTTACAGAAGAGTTACTGAAAAAAATAGCTTCGTACAAAAGACAAGTTTTTGTACTCTATATACGGGGTTGTAGGAGTGGGGTGGGGTCCCGCTTTTTTACTCCTTTTATACAGAGGTGGAAGTAGGGTACAACTTTATAAATAAAAAAGAAAAAAGAGGTGGAAGTAGGGTTCAAGGAGTGTGCCAAAAAAAGAAGAAGAGGGGAAGTATAGGGAATCATCTTCGGACATTGTCAAATTGGACGTTAATGAAGTAACATATTGCCTGTTGGAATATTTGGGGTGTAGTAAGTACGGTGATACATGACTGGAGATGGGATGTGTTTGCCGAGGTGAAAATAGAATGGGACTAATGAGAAATTGCAATGGCACTTGAAGGAGATGTTGTCTGATTTGTTGTGTTCATAGTCTACGGAAATGACAACAGGCTCTCTTGTTATATAGACGAATGGGTGGAGTTTGTAGAGACCAGAGAATCATATCATTTTGTAAATTCTCTACTTTTTGGCATATATCTTGTATATAACCGTTGTGGCCGTGTTATGGTGAAAAGACATGTACTTAATTTAAAAAAAAGGTTTCTGCGAAAAGAAGGGTTATTTAGTGAATTGGTAAAAATTGGTTTAAACTATCTACAATTAAAAAACAGGAAAAAAGAAGGTAAACCATGTCTATTGTGGTTTTGAAGTTGTGAATCAAAATTTCATATGGTAATTTAGACATGTAAAAATAGTTTCTTCTGATATAGTTACATTTGTAGTTCTGATTCTTCTGCACGAGTCAAATGTGGATAGCTTGAGGATGCTTCACATTCAATCCGGTAGGAGTTAAAAACCCAATAAAGCCACATTCCTTTGTCCTCCTGTTTTACTTCCTAACTTAATAACCAAGGGTCCCTTTTCTCTTCATTTTACTTTTGCCCTCAATTTAACTATGAAAGCGATTGGTGAAACTGCTTGAAATATCAGATTATGGAGCTCTGCCTTATGTCACTGCACTTAGAACCCGACATAACATTTCTAAACGCTATTTTCGCAATTCTTTTTATTGGCATGTATGGAATAGATCACACCCCTATAAATATTCAACTGTCAGTATCAGTTTTGTGCAGAAGCTTGAGATGTGACACTTGTTATATGCTTAGACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTG</genome_strand>
        <mrna_strand>CATTTGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGGTTTAATCATAGAAGTCATCAAGAAGATGCAGAGGTATACAAATAGAGAGCAAGGTTACATTGTAGCTTCAAAAAGCAAATGTGAGACCTTATTAGCTACATTACAGGAGCACTATCTTAGGTACAGAGAGTTAACAATTGATTTGATGGGGGGCATATATGCCCAACTAAAGAAAGTAGACATTTTGCTTTAAGGGAGTGGCTGACAGTTGATTTTCCTTCAAAGCATCTACTGTTTCTTTCATTCCATAACCATTCTTCAAATTGATTTGATGGACGTGTCAACTTCCCAACTGCCCCAGGTTTCAAAAGCCTCATTGGTACTGTTTGGCATAACCCAACTAATTCCAAAAAGAGAACAGAACATGCTCGAAAAATTTGTTGCAACTAGACAGTACAGAAATCGGTGATTGTTGATCTCTTAACTCCCTGTGACACATATGGCATCTGTTGACCATCTGAATTTCATAAGGTTGTCCTGAGTCAAACATTTCTAATAGAGTACAGTCCATCTGAAACAGAATATTTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGAAGAAGACATCTGCCCATCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314593" ref_strand="+" ref_description="SGN-U314593        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: AT1G05010.1 | Symbol: None | 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1), Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb:X66719 (EAT1). ESTs gb:T43073, gb:T5714, gb:R90435, gb:R44023, gb:AA597926, gb:AI099676, gb:AA650810 and gb:29725 come from this gene | chr1:1431189-1432857 REVERSE | Aliases: T7A14.12, T7A14_12 (evalue: 2e-129, score=459) genbank/nr: gi|19251|emb|CAA68538.1| 1-aminocyclopropane-1-carboxylate oxidase [Lycopersicon esculentum] >gi|119639|sp|P07920|ACCO2_LYCES 1-aminocyclopropane-1-carboxylate oxidase 2 (ACC oxidase 2) (Ethylene-forming enzyme) (EFE) (Protein GTOMA) (evalue: 2e-168, score=595)">
      <seq>tgaaaaaaagataacataaacattaaacaacaaaatatagcaaacacactaataaccaagaaactttagaggcccaaaaaaaagaaactcactttcaatatcttccatctttttattccacacactatttactctaaaaaagaaaaaaaaaacattttcttctatttcttcaagaaattaaaaatggagaatttcccaattatcaacttggaaaaactcaatggtgctgagagagtagccacaatggaaaagattaatgatgcttgtgaaaattggggcttctttgagttggtgaaccatggaattccacatgaagtgatggacactgtggagaaattaacaaagggacattacaagaagtgtatggaacaaagatttaaagaattggttgctaagaaaggacttgaaggtgttgaagttgaggttactgatatggattgggaaagtacttttttcttgaggcatctcccttcttctaatatctctcaactacctgatcttgatgatgtatatagggaagttatgagggattttgctaaaagattagagaagttagcagaagaactcttggatttgctttgtgaaaaccttggactagaaaaaagttacttgaaaaatacattttatggctcaaaaggtccaaattttgggactaaagtaagtaactatccaccatgtccaaaacctgatctaataaaggggttgcgtgcacatactgatgctggtggcataatacttctcttccaagatgacaaggtgagtggcctacaactcctcaaagacggtcgatggatcgatgttcctcccatgcgccactccatcgtggttaacctaggtgaccaactcgaggtaatcacgaacgggaagtacaagagtgtgatgcatagagtgatcgcacaaaaagacgggactcggatgtcattagcatccttctacaatccaggaaatgatgcattgatctatccagcaccagctctagttgataaagaggcagaggaacataacaaacaagtttaccctaaatttatgtttgatgattacatgaaattatatgctaatctcaaatttcaagccaaagagccaagatttgaagccatgaaagctatggaaagtgatccaattgcaattgcttagattaaaaattaaaaaaattggaagaaaaattatttgttattgacatacattatttgtatttttttttgaagtatagtggaatttatatatttttattacaaagtgtgcgtccctactacatgtgtggtaaagaggactaaagtttgtatcttacacatattttaatacccaaaaatgagatgtgtttctgtttttctaattagtttttccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="159329" stop="162770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159637" g_stop="159850" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="288" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="159851" i_stop="160185" i_length="335">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160186" g_stop="160412" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="515" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="160413" i_stop="161238" i_length="826">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="161239" g_stop="161572" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="849" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="161573" i_stop="161970" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="161971" g_stop="162469" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1348" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1349" polyA_stop="1380"/>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U314593" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1274</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159637" e_stop="159850"/>
          <exon e_start="160186" e_stop="160412"/>
          <exon e_start="161239" e_stop="161572"/>
          <exon e_start="161971" e_stop="162469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAGAAAACTCACTTTCAATATCTTCCATCTTTTTATTCCACACACTATTTACTCTAAAAAAGAAAAAAAAAACATTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAGGTACAATATTTATAAATAAAAGTATTCACTCAATATCGATATATTTTTAATATTGAATTACGATCCATTCAAATAAATTTTCTTATGTCTTTTTTTTTTTTAAAAAAAATGTGCCTTTATGGCCTTGGTGAGTGGAGCTAGAGTGTCCACCTCCGATTCAAATTTTGTATTTGTCTTAAAAACATCTTTTAAATACATATATTATTAACTTAAAACCTAATATTATAATTTCAGATTCTGATTCGACCCCTGGTCTTATTCCATAAAAATATACTAAGGTTTTTTTTTTAATGTAATCTTGAAAATAATATATACATTTTTTTTTAAATGTATAGTTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAGGTAAACTTCGCAATCTCACGTTACGTGATTTTTTTTCATCTGTCTAAGTTTTGATCGATGGTGGAGCCACGTATAAGAAAAGGGAACTCAATTGAATAACCTTCGCCAGAAAATTATAAAAACAAACTTTCGCGTATGTATTATAAAATCTTGAAATTTTTTTTATAACATACTAGTAATATATAGGTTTAAATCTCAAGTTAATATTTTTCTAAACCTCGTATTAAAATTTATGTCTGTATCATTATCTAGATTGATAAAAGACAAATTAATACGATTATATTTTATTATAAAAGTAACATGATTTATAAGTGATAAGTGTCCAAACTTTGCCAGCCTTGATTGACCAAGATCCCAAATTATGAGTTATTTTAGTAGGACAACAATGATTTTTTTTTTTTAAAACTATAAGTCTATATATAACTAAATATGTTTTCCACCTTCTAACCCTTATTTTATTATGTATATTTAATTTGTCTTCTTTTGATGTTTGTGGTTGGGGGTTCCACATGTACTTTGGACTGAGACTTGACCACTAATAGAACTATCATAATAAACTAAGAACTATAGTAAGATCACTTCAAAGAAAATTAGAATTATAAATAAAAATTCATCGTTAATCCTATTTAGCGATGAATTATTAAAAGATCTTATCAGCAACGGTCTATTTAGAGACAAAATGATAAAAATCATAGTTAATTCCTATTTTTTGTATAATACATAGTTTGGAGACAGAGATAGAGTGTCATAAGGTGTGAAGTGTTCATTTGAAATTTCCCATAGTAAAATTCTGGCTCGATCGCTGATATTGTTTTATATGATGTAGGGAAGTTATGAGGGATTTTGCTAAAAGATTAGAGAAGTTAGCAGAAGAACTCTTGGATTTGCTTTGTGAAAACCTTGGACTAGAAAAAAGTTACTTGAAAAATACATTTTATGGCTCAAAAGGTCCAAATTTTGGGACTAAAGTAAGTAACTATCCACCATGTCCAAAACCTGATCTAATAAAGGGGTTGCGTGCACATACTGATGCTGGTGGCATAATACTTCTCTTCCAAGATGACAAGGTGAGTGGCCTACAACTCCTCAAAGACGGTCGATGGATCGATGTTCCTCCCATGCGCCACTCCATCGTGGTTAACCTAGGTGACCAACTCGAGGTAAAAAATCTTTAAAATGTCTTATTTGACGTTTACTTCATCTGAAGTTTAACTTTTATATACTGATAATATACTTAGAACAAAGAAGGTTTGAGTCAGAATAACATGACTTTTTGTTGGTTGAGCCCTAATGTGTTGGATCATATCATGTGGACTATAAATTGAAATATGTCCACATTTTCATACCTTGAGCATCATGACATACTTTCTTATGGATAGTCTCTTATTGTGAAGTGGTCCGCAAAGGTTAAACAAGCAGATACATATAATTGTCCATAATAAGTCGTACTAGCGACTAAGCAACCTGATATAACATGTTAACATTATACTGATAGTATGATAGTATAAACCATAACTCTTTATACTATTGATGTATATAAGCTCAATCCTTTAAACAGGTAATCACGAACGGGAAGTACAAGAGTGTGATGCATAGAGTGATCGCACAAAAAGACGGGACTCGGATGTCATTAGCATCCTTCTACAATCCAGGAAATGATGCATTGATCTATCCAGCACCAGCTCTAGTTGATAAAGAGGCAGAGGAACATAACAAACAAGTTTACCCTAAATTTATGTTTGATGATTACATGAAATTATATGCTAATCTCAAATTTCAAGCCAAAGAGCCAAGATTTGAAGCCATGAAAGCTATGGAAAGTGATCCAATTGCAATTGCTTAGATTAAAAATTAAAAAAATTGGAAGAAAAATTATTTGTTATTGACATACATTATTTGTATTTTTTTTTGAAGTATAGTGGAATTTATATATTTTTATTACAAAGTGTGCGTCCCTACTACATGTGTGGTAAAGAGGACTAAAGTTTGTATCTTACACATATTTTAATACCCAAAAATGAGATGTGTTTCTGTTTTTCTAATTAGTTTTTCCTTAA</genome_strand>
        <mrna_strand>CAAAAAAAAGAAACTCACTTTCAATATCTTCCATCTTTTTATTCCACACACTATTTACTCTAAAAAAGAAAAAAAAAACATTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAG...............................................................................................................................................................................................................................................................................................................................................TTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTATGAGGGATTTTGCTAAAAGATTAGAGAAGTTAGCAGAAGAACTCTTGGATTTGCTTTGTGAAAACCTTGGACTAGAAAAAAGTTACTTGAAAAATACATTTTATGGCTCAAAAGGTCCAAATTTTGGGACTAAAGTAAGTAACTATCCACCATGTCCAAAACCTGATCTAATAAAGGGGTTGCGTGCACATACTGATGCTGGTGGCATAATACTTCTCTTCCAAGATGACAAGGTGAGTGGCCTACAACTCCTCAAAGACGGTCGATGGATCGATGTTCCTCCCATGCGCCACTCCATCGTGGTTAACCTAGGTGACCAACTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTAATCACGAACGGGAAGTACAAGAGTGTGATGCATAGAGTGATCGCACAAAAAGACGGGACTCGGATGTCATTAGCATCCTTCTACAATCCAGGAAATGATGCATTGATCTATCCAGCACCAGCTCTAGTTGATAAAGAGGCAGAGGAACATAACAAACAAGTTTACCCTAAATTTATGTTTGATGATTACATGAAATTATATGCTAATCTCAAATTTCAAGCCAAAGAGCCAAGATTTGAAGCCATGAAAGCTATGGAAAGTGATCCAATTGCAATTGCTTAGATTAAAAATTAAAAAAATTGGAAGAAAAATTATTTGTTATTGACATACATTATTTGTATTTTTTTTTGAAGTATAGTGGAATTTATATATTTTTATTACAAAGTGTGCGTCCCTACTACATGTGTGGTAAAGAGGACTAAAGTTTGTATCTTACACATATTTTAATACCCAAAAATGAGATGTGTTTCTGTTTTTCTAATTAGTTTTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338863" ref_strand="+" ref_description="SGN-U338863        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05010.1 | Symbol: None | 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1), Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb:X66719 (EAT1). ESTs gb:T43073, gb:T5714, gb:R90435, gb:R44023, gb:AA597926, gb:AI099676, gb:AA650810 and gb:29725 come from this gene | chr1:1431189-1432857 REVERSE | Aliases: T7A14.12, T7A14_12 (evalue: 8e-44, score=174) genbank/nr: gi|19251|emb|CAA68538.1| 1-aminocyclopropane-1-carboxylate oxidase [Lycopersicon esculentum] >gi|119639|sp|P07920|ACCO2_LYCES 1-aminocyclopropane-1-carboxylate oxidase 2 (ACC oxidase 2) (Ethylene-forming enzyme) (EFE) (Protein GTOMA) (evalue: 1e-59, score=233)">
      <seq>ttttcttctatttcttcaagaaattaaaaatggagaatttcccaattatcaacttggaaaaactcaatggtgctgagagagtagccacaatggaaaagattaatgatgcttgtgaaaattggggcttctttgagttggtgaaccatggaattccacatgaagtgatggacactgtggagaaattaacaaagggacattacaagaagtgtatggaacaaagatttaaagaattggttgctaagaaaggacttgaaggtgttgaagttgaggttactgatatggattgggaaagtacttttttcttgaggcatctcccttcttctaatatctctcaactacctgatcttgatgatgtatataggtaaacttcgcaatctcacgttacgtgattttttttcatctgtctaagttttgatcgatggtggagccacgtataagaaaagggaactcaattgaataaccttcgccagaaaattataaaaacaaactttcgcgtatgtattataaaatcttgaaattttttttataacatactagtaatatataggtttaaatctcaagttaatatttttctaaacctcgtattaaaatttatgtctgtatcattatctagatttgataaagacaaattaatacgattatattttattataaaagtaacatgattttatagtgataagtgtccaaactttgccagccttgattgaccaagatcccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="159417" stop="161072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159717" g_stop="159850" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="159851" i_stop="160185" i_length="335">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160186" g_stop="160772" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="721" r_length="587" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U338863" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159717" e_stop="159850"/>
          <exon e_start="160186" e_stop="160772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAGGTACAATATTTATAAATAAAAGTATTCACTCAATATCGATATATTTTTAATATTGAATTACGATCCATTCAAATAAATTTTCTTATGTCTTTTTTTTTTTTAAAAAAAATGTGCCTTTATGGCCTTGGTGAGTGGAGCTAGAGTGTCCACCTCCGATTCAAATTTTGTATTTGTCTTAAAAACATCTTTTAAATACATATATTATTAACTTAAAACCTAATATTATAATTTCAGATTCTGATTCGACCCCTGGTCTTATTCCATAAAAATATACTAAGGTTTTTTTTTTAATGTAATCTTGAAAATAATATATACATTTTTTTTTAAATGTATAGTTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAGGTAAACTTCGCAATCTCACGTTACGTGATTTTTTTTCATCTGTCTAAGTTTTGATCGATGGTGGAGCCACGTATAAGAAAAGGGAACTCAATTGAATAACCTTCGCCAGAAAATTATAAAAACAAACTTTCGCGTATGTATTATAAAATCTTGAAATTTTTTTTATAACATACTAGTAATATATAGGTTTAAATCTCAAGTTAATATTTTTCTAAACCTCGTATTAAAATTTATGTCTGTATCATTATCTAGA-TTGATAAAAGACAAATTAATACGATTATATTTTATTATAAAAGTAACATGATTTATAAGTGATAAGTGTCCAAACTTTGCCAGCCTTGATTGACCAAGATCCCAAAT</genome_strand>
        <mrna_strand>TTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAG...............................................................................................................................................................................................................................................................................................................................................TTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAGGTAAACTTCGCAATCTCACGTTACGTGATTTTTTTTCATCTGTCTAAGTTTTGATCGATGGTGGAGCCACGTATAAGAAAAGGGAACTCAATTGAATAACCTTCGCCAGAAAATTATAAAAACAAACTTTCGCGTATGTATTATAAAATCTTGAAATTTTTTTTATAACATACTAGTAATATATAGGTTTAAATCTCAAGTTAATATTTTTCTAAACCTCGTATTAAAATTTATGTCTGTATCATTATCTAGATTTGAT-AAAGACAAATTAATACGATTATATTTTATTATAAAAGTAACATGATTTTATAGTGATAAGTGTCCAAACTTTGCCAGCCTTGATTGACCAAGATCCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iJpoQ7/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318324" ref_strand="+" ref_description="SGN-U318324        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | RabGAP/TBC domain-containing protein, similar to plant adhesion molecule 1 (Arabidopsis thaliana) GI:3511223; contains Pfam profile PF00566: TBC domain | chr3:2516310-2518917 REVERSE | Aliases: F17A17.23(evalue: 0, score=651) genbank/nr: gi|18398086|ref|NP_566323.1| GTPase activator protein -related [Arabidopsis thaliana](evalue: 0, score=651)">
      <seq>ctttcattttgtctgtgtccctcatgttccttttcaccttgtctaaaggataattctattgtgtctatattctttttgacggttgtgtgatatatctttatgttaatccacattttattatattatttctgctatattttgccaaaaagatgacctttcttttgaatttttggatgcccatttgttaaaaaaagctcagtttttgctatttaatggtaaaaatttggcctttctttgaattattggatatcccatgtgtaaaaaagctcaatttttgcaatttaatgctaaaaatttgacctttctttgaattcttggatacctatatgtaaaaagattcaatttttatacttttatgttaaagttgagagcttgttttgtgtaaaatccaaaaaaatgtatggaacccatagcaagagagacatggagattgaatatcaatctcaagttccaattttgaggccaagtatacatgccagaagggcaaagattactgtgaaatttcaagatctgtatggatttactgttgaagggaatgttgatgatgttaatgtgttgaatgaggttagggagaaagttagggaacaagggaaagtttggtggtcattagaagctagcaaaggtgctaattggtatttgcaaactcatgtttcctcaacccttaaaacatccctcaaattctctgctttggtgaatgcaattactctcaagaagctcattagaaaaggaattccacctgttttgaggcctaaggtgtggttttcactatcaggagctgctaagaagaaatcgactgccccggatagttattatgaggatttgacaaaggctgtacaggataaggtcacacctgcaaccaagcagattgatcatgaccttccacgaacctttcctggtcacccctggttggacactgctgagggtcatgctgcccttaggcgggtccttgttgcctattctttccgtgattctgatgttggctactgccagggattaaactatgttgcagcattattattgctggtgatgaaaaccgaagaagaggctttctggatgattgctgtccttctagagaatgtgttagtcaccgactgttataataagaacttatctggatgtcatgttgaacaaagagtgttcaaggatctattaaccaaaaaatgtccaaggatagccgctcatttggaggcactggagttcgacgtttctcttgtttgcaccgaatggtttctctgccttttcgccaaaagcttgccttctgagacaaccttgcgggtctgggacgtccttttcaatgaaggtgcaaatcttctatttcatgtggcattggcaatttttaagatgaacgaagaagagttgctgacggtgcatcatgttggggatgtaattcatataatccagagatgcacacatcaactttttgatcctgatgacttgttgacggttgcttttgatcaaattggttttatgactactactactatatcaagacagaggaaaaagcaggaaccagcggtcatggcagagcttgaccagagactaaggcggttaaattccataaacgcgagtgatgaacaatagttttgtgatggaaaccttataattgtagtatatatatatatatacatgttgtatctctatcagggcatgctgcccttataggacatcacaacccttgtgctcataatgcaatgagctaaacaacagcttgaagagtcctgttgtgtttatttatgttgatagatcttcaaaagtgtaaattttgaactgttgtatactagtcctatattatttccccttgttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0026C13-MsKKt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0026C13.1" temp_strand="+" temp_description="C12HBa0026C13.1  AC209585.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0026C13 upload_account_name:italy">
        <position start="165825" stop="172193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166124" g_stop="166995" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="166996" i_stop="167893" i_length="898">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="167894" g_stop="168010" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="990" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168011" i_stop="170400" i_length="2390">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="170401" g_stop="170579" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1169" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="170580" i_stop="170673" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="170674" g_stop="170767" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1170" r_stop="1263" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="170768" i_stop="170897" i_length="130">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="170898" g_stop="170975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1264" r_stop="1341" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="170976" i_stop="171106" i_length="131">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="171107" g_stop="171208" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1342" r_stop="1443" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="171209" i_stop="171531" i_length="323">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.346" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="171532" g_stop="171893" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="1805" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1827"/>
      <MATCH_line gen_id="C12HBa0026C13.1" gen_strand="+" ref_id="SGN-U318324" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1804</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0026C13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166124" e_stop="166995"/>
          <exon e_start="167894" e_stop="168010"/>
          <exon e_start="170401" e_stop="170579"/>
          <exon e_start="170674" e_stop="170767"/>
          <exon e_start="170898" e_stop="170975"/>
          <exon e_start="171107" e_stop="171208"/>
          <exon e_start="171532" e_stop="171893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTTGTCTGTGTCCCTCATGTTCCTTTTCACCTTGTCAAGAGGTTAATTTTATTGTTTCTATATTCTTTTTGAGGGTTGTGTGATATATCTTTATGTTAATCCACATTTTATTAGTTTATTTCTGCAATTTTTTGCCAAAAAAATGACCTTTCTTTTGAATTTTTGGATGCCCATTTGTT-AAAAAAGCTCAATTTTTGCTATTTAATGGTAAAAATTTGGCCTTTCTTTGAATTATTGGATACCCCATGTGTAAAAAAGCTCAATTTTTGCAATTTAATGCTAAAAATTTGACCTTTCTTTGAATTCTTGGATACCTATATGTAAAAAGATTCAATTTTTATACTTTTATGTTAAAGTTGAGAGCTTGTTTTGTGTAAAATCCAAAAAAATGTATGGAACCCATAGCAAGAGAGACATGGAGATTGAATATCAATCTCAAGTTCCAATTTTGAGGCCAAGTATACATGCCAGAAGGGCAAAGATTACTGTGAAATTTCAAGATCTGTATGGATTTACTGTTGAAGGGAATGTTGATGATGTTAATGTGTTGAATGAGGTTAGGGAGAAAGTTAGGGAACAAGGGAAAGTTTGGTGGTCATTAGAAGCTAGCAAAGGTGCTAATTGGTATTTGCAAACTCATGTTTCCTCAACCCTTAAAACATCCCTCAAATTCTCTGCTTTGGTGAATGCAATTACTCTCAAGAAGCTCATTAGAAAAGGAATTCCACCTGTTTTGAGGCCTAAGGTGTGGTTTTCACTATCAGGAGCTGCTAAGAAGAAATCGACTGCCCCGGATAGTTATTATGAGGATTTGACAAAGGCTGTACAGGATAAGGTCACACCTGCAACCAAGCAGATTGATCATGTGAGTTTCTTGGTTCAAATATTACATTGTTCCCTTGTGAGACTCAAATGATAGATTTTGGTTTTGTTACTGAGCACGATGTCAGTTTTCTTATGGCTTGGTTAGATTTTGCATTATGCTGAGACTTGATGTTTATTTGAAAGATTTGGTTTTGTTACTTAGCATGTTTTTTTGTGTTTTTTAATATGTTAGTTCTTGGAGTGAAGGGTTAAACACACACTTAAAGTATCCTGGCTTTTCGAGTTTCATACCTGAACTATCTATCAAAACATACCTTAGTTATCAATTTTTCCTTTTCCCTACCTGAATGATGATGATATTTTACATAGGAAAAGAGAACAATTGATAGTTGAGGTGTGTTTTGATAAATAGTTAAGGTAGGAAACTCTACTAATTGAGATACTTTAGGTGTTTTTTTTAACCATTAACTCTAGCTCTTTTGTGTGTCCTGACAGATTAATTGCATTAACGACTATTTACACTCGTAACAACAGCACTAGAGTTTCTTTTTCTCATTGTGGTTGGTTAACTGCATGACATTCTGCACAGGTTTGTATATACACAACAAGAACACCCAGTGTAGGGTTGTATTTATGCTGCCATGATATTTGAAGAGTGAAATTTACTCACCATGCTCTTTTAGGGTCTTTAAACTGATGTTTCCTTGTCTGTGAATAAGTTCTAGGAAGTTATGTTTTTTTTTTAATTTAGAGCGAGAATCACATGTTCTGCACAGTGCACATATACAACGATTAAAGCTCAGTTAGCTGACGGACAGGATTAGTTCATGTAACTTGTTACCAAGCTTGTAGTAAATGCTGAAAATTTTGAGATATGTTACATCTTATGCTTTGGTATCGCCACCTTTGTTATTATCGGAATATTTTTTTACTTGCAGGACCTTCCACGAACCTTTCCTGGTCACCCCTGGTTGGACACTGCTGAGGGTCATGCTGCCCTTAGGCGGGTCCTTGTTGCCTATTCTTTCCGTGATTCTGATGTTGGCTACTGCCAGGTAGATATGTTTTTTCTTAGTAGAGCAAAAGATATTATTTTGATATTCTATCAGCTTTACATATTCTCCATGCTTCCATGCTTCACGGTGGAGGCCATACCATCATTTGCATAAACATCGGTATAGCTTCCCTTGGTTCTAAACTGTTAATCTTTCAGTACGCTTGAATAGGCCCAACTTACAGGAATATGTACGTAAATATGATTTTAAGATTAAGATCACCTACTTGAGTATTTCTACCTTTGAGAAGTTACCTTCGGTTAGTCCTAGGCTTGTACAATTCTAGAATCATTTATAGTTGAGTTACATAATCCTCTCGGTTTAGAGTCAAAACAGACCACAAATCTCCTGAACTACCTCTTGGTTTCTCTTGTTCAGTGTGTGGTAGACAGTGATACATTAGTCATAACTGACTAGTGCTCAAGGATGAATTTTAATGCATAGTGTGAGCACATCCTACCCCCCCAGACCCCACTTGTGGGATTAACGGGGTATGTTGCTGTTGTAGTGCTTGTTTAGCACTACGTCTTTGTTAGAACCTCCTTGGGTTAAACTCACAATTTAATCTAGTAGTTAGCATTAAATCCAATAAAACATGCTCTTAATGAAAATGACTACTTAAAAGAATATAGTGTCAGAAAGTCCAGGTACATCTACCCTTAACGGAATTCTACTCCATAGTGTAGTTAAATGAAACCAAGAGAATACTAGAATTTATCATCAATATGAAGAGTAAAGATTAAAGGAAAGATGAACTTGGCTAGAGAATGTTGTCTTGGCCGTTTTCTTCTTTCGTCTCTTTTTAGTGAAGCCTATCCTTAGTTGTCTGTCTTCTCAAATTTCAACTCTAAAACCTTCTTTAAACAACCTTCAAATACACTCTGATGGAGTTTCAATCGATCAAGGAAACACTTCTCTTCTTGAAAGAGTATAAATGTGAAACTGCCTCTGGGCATTACTTGGCTGAAAACTAGTTCAACTCTGCTGACATGCTGCACCCATCCACGTCCAAATGCTGGCATAGCTGCAGTCAGCCACTGCCCGATTTGTACTATTTTGGCAGTGTATTTGCTTTGGAATCCAACATAGCTGCACTGGTTCACTACTAATTTTGATGTACCCAAATTATGCTTTATTTCCTCAGTTGGTATCTAGATTTCAAAGCTACAATCCTGTCAAACTTCAAGGTCCAACTCCTCTTGGATTTATGCATTTTCGATTTTTGAAGTTGAATCATAAGATGACCTCTTGATAGCAATTTTTATTCCAAATTGTGCTTTATTTGTTTGGTTGGGATCTTCAAGAGCTACAATCCCCTCAAACTTCAAGGTCCAACGCTTCTTTGATTATGCGTTTTCTATTCTGAAGTTGAATCACAAGATGACCTCTTGATAGCATTTTATTGCATAAATCATCGTTCTCCTTTTGTACAAAGATTAAGAAAAAAGAAATTGTTCAAGACTTGAAAAACTTTGTGAAACTGGTAAAGGTAAAAAACATGAAAGGATAATACTACTCCTGTCACATTTTGTTTGACCTAGTTATTATGTAGAGATTTCGCGTTAGAGTTAGATATTAGTATTGTTCTTTTCATTGTTAAATTATATATAAGTAGTGCCTTTCATATAAAATATGAGATACATAACAAATGCTCGACGGTGTATGCAAAATAAGCCATGTCAGACCATTAACCAATTATATGAGTATGCTTCAACAATCAATTATCCAATCACAAATCAGTTAGAGTTGGTTACGATAGAAGTGAAATCAGTTGATGAGTGATTAACACTTCCTCAAATTCATGTGTCTTATCAACCAAGTGTGGTTGTGCAAGTCTAAACTATTCATTCCAATTTCTTTTCTGCTTTTTGACCATGTTGATGATAAAGGTGATGTTAGTTTTGTTTTATTTATTCAACATCTCAAGGAACAGATGTTCAAAAAGTAATATATTTAGCATAGTTGCCTTAGGTTCTAAACCAAACTGCATGCAGCATCCAACTCCTAACAATTTTGAAGCATTTTGCACATAAATTTGGCTTCAGTTGTGATTGACTTAGAGAAAGTGATATGGAAACCGACATCAAAAAGTGGTCACTTTGTTTCACCAATACTCCCTCAGTCCCAATATAGTGTCTTTGTTCGATTGGGCATGGAATTTAAGAAATAAAGGAAGACTTTTGAATCTTATGTTCTTAAATTAAATGTGCATAGTCCTTCAAATCTTGTGGTCTTGAACTTGTCACATAGAATGTTGGAATTTGAAGACTTATTAAATATAGAAAGAGACGCTTTTTGAGACAGATTAAAAAGGGAAGTAAGAAACTTCATTTGGGACGGAGGGAGTAGTTGGTATGTCGATCTGGTCTAAATCAGTTGATTATTTTCAGGGATTAAACTATGTTGCAGCATTATTATTGCTGGTGATGAAAACCGAAGAAGAGGCTTTCTGGATGATTGCTGTCCTTCTAGAGAATGTGTTAGTCACCGACTGTTATAATAAGAACTTATCTGGATGTCATGTTGAACAAAGAGTGTTCAAGGATCTATTAACCAAAAAATGTCCAAGGTACTTATAATCTCTTCCATAAGTTTGCTCTTGGCGTGAATATAGATTCTTTACTAGTTCTGTTGTTTTCTGATACTGATGAGGACACATACAGGATAGCCGCTCATTTGGAGGCACTGGAGTTCGACGTTTCTCTTGTTTGCACCGAATGGTTTCTCTGCCTTTTCGCCAAAAGCTTGCCTTCTGAGGTCAACAAATTGTCTCTTTATCCTCTGTGTGTTTGAGTTGCTATGAAATAGACTGTGCACTATATGTTCTCATATGAAAACACCAGTGTACTATTGTTTACTGATTCTTCCATCGGTTACTTCATTACAGACAACCTTGCGGGTCTGGGACGTCCTTTTCAATGAAGGTGCAAATCTTCTATTTCATGTGGCATTGGCAATTTTTAAGGTAAATTCTTCCTAATATTAGGCATGTATGATAACTTCATCCGTCATTTTTATTGGCTCTCCGAGTTTTTCATCTGCTTAGAACTGAAATTCTAAATGTTAAAACTTATCCTACAATATTCCAATGACTAGATGAACGAAGAAGAGTTGCTGACGGTGCATCATGTTGGGGATGTAATTCATATAATCCAGAGATGCACACATCAACTTTTTGATCCTGATGACTTGTTGACGGTAATATGTTCTCGCTAGACTCCTTTTCTGTTTATTCTCATATCTTCAAATACCTATTTAACGATTAAGCCAGAATTGTAATGGATTTTTCCAATGGAGTTTAGTGTTATAATTAGCTGATCCAGAATTTGAAGTTTATGGGTTTTGAACCTGCAACCGAACCAGTAACTAGTCTTAGTTATTTGGTTTAGTGTTCACAGTTCAAGTATATTTATACACATTTAATGAATTTTCTGATACAAATACGAGGTTTAAGACCACCATTTATACACATCGTTTCAACCCTGAAAGTGAACCATATTCTTGACAAAAAAAAATTTCAGGTTGCTTTTGATCAAATTGGTTTTATGACTACTACTACTATATCAAGACAGAGGAAAAAGCAGGAACCAGCGGTCATGGCAGAGCTTGACCAGAGACTAAGGCGGTTAAATTCCATAAACGCGAGTGATGAACAATAGTTTTGTGATGGAAACCTTATAATTGTAGTATATATATATATATACATGTTGTATCTCTATCAGGGCATGCTGCCCTTATAGGACATCACAACCCTTGTGCTCATAATGCAATGAGCTAAACAACAGCTTGAAGAGTCCTGTTGTGTTTATTTATGTTGATAGATCTTCAAAAGTGTAAATTTTGAACTGTTGTATACTAGTCCTATATTATTTCCCCTTGTTAA</genome_strand>
        <mrna_strand>CTTTCATTTTGTCTGTGTCCCTCATGTTCCTTTTCACCTTGTCTAAAGGATAATTCTATTGTGTCTATATTCTTTTTGACGGTTGTGTGATATATCTTTATGTTAATCCACATTTTATTATATTATTTCTGCTATATTTTGCCAAAAAGATGACCTTTCTTTTGAATTTTTGGATGCCCATTTGTTAAAAAAAGCTCAGTTTTTGCTATTTAATGGTAAAAATTTGGCCTTTCTTTGAATTATTGGATATCCCATGTGTAAAAAAGCTCAATTTTTGCAATTTAATGCTAAAAATTTGACCTTTCTTTGAATTCTTGGATACCTATATGTAAAAAGATTCAATTTTTATACTTTTATGTTAAAGTTGAGAGCTTGTTTTGTGTAAAATCCAAAAAAATGTATGGAACCCATAGCAAGAGAGACATGGAGATTGAATATCAATCTCAAGTTCCAATTTTGAGGCCAAGTATACATGCCAGAAGGGCAAAGATTACTGTGAAATTTCAAGATCTGTATGGATTTACTGTTGAAGGGAATGTTGATGATGTTAATGTGTTGAATGAGGTTAGGGAGAAAGTTAGGGAACAAGGGAAAGTTTGGTGGTCATTAGAAGCTAGCAAAGGTGCTAATTGGTATTTGCAAACTCATGTTTCCTCAACCCTTAAAACATCCCTCAAATTCTCTGCTTTGGTGAATGCAATTACTCTCAAGAAGCTCATTAGAAAAGGAATTCCACCTGTTTTGAGGCCTAAGGTGTGGTTTTCACTATCAGGAGCTGCTAAGAAGAAATCGACTGCCCCGGATAGTTATTATGAGGATTTGACAAAGGCTGTACAGGATAAGGTCACACCTGCAACCAAGCAGATTGATCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTCCACGAACCTTTCCTGGTCACCCCTGGTTGGACACTGCTGAGGGTCATGCTGCCCTTAGGCGGGTCCTTGTTGCCTATTCTTTCCGTGATTCTGATGTTGGCTACTGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAAACTATGTTGCAGCATTATTATTGCTGGTGATGAAAACCGAAGAAGAGGCTTTCTGGATGATTGCTGTCCTTCTAGAGAATGTGTTAGTCACCGACTGTTATAATAAGAACTTATCTGGATGTCATGTTGAACAAAGAGTGTTCAAGGATCTATTAACCAAAAAATGTCCAAG..............................................................................................GATAGCCGCTCATTTGGAGGCACTGGAGTTCGACGTTTCTCTTGTTTGCACCGAATGGTTTCTCTGCCTTTTCGCCAAAAGCTTGCCTTCTGAG..................................................................................................................................ACAACCTTGCGGGTCTGGGACGTCCTTTTCAATGAAGGTGCAAATCTTCTATTTCATGTGGCATTGGCAATTTTTAAG...................................................................................................................................ATGAACGAAGAAGAGTTGCTGACGGTGCATCATGTTGGGGATGTAATTCATATAATCCAGAGATGCACACATCAACTTTTTGATCCTGATGACTTGTTGACG...................................................................................................................................................................................................................................................................................................................................GTTGCTTTTGATCAAATTGGTTTTATGACTACTACTACTATATCAAGACAGAGGAAAAAGCAGGAACCAGCGGTCATGGCAGAGCTTGACCAGAGACTAAGGCGGTTAAATTCCATAAACGCGAGTGATGAACAATAGTTTTGTGATGGAAACCTTATAATTGTAGTATATATATATATATACATGTTGTATCTCTATCAGGGCATGCTGCCCTTATAGGACATCACAACCCTTGTGCTCATAATGCAATGAGCTAAACAACAGCTTGAAGAGTCCTGTTGTGTTTATTTATGTTGATAGATCTTCAAAAGTGTAAATTTTGAACTGTTGTATACTAGTCCTATATTATTTCCCCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>32</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5689" PGL_stop="9819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5689" e_stop="5804"/>
            <exon e_start="8734" e_stop="9566"/>
            <exon e_start="9644" e_stop="9819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.388" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5689" e_stop="5804" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.388">
            <gDNA_intron_boundary i_start="5805" i_stop="8733" i_length="2929"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8734" e_stop="9566" e_length="833"/>
          </exon>
          <intron i_serial="2" don_prob="0.611" acc_prob="0.967">
            <gDNA_intron_boundary i_start="9567" i_stop="9643" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="9644" e_stop="9819" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5689" stop="5804"/>
              <exon start="8734" stop="9566"/>
              <exon start="9644" stop="9819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGTCCAAGTCAATGAACAGCTACCCTTTTTGAGTTTCTCTGTTGGTTGATAAGAAGGAATCAAAGAAACCCCAGGTGAAAATTGGGGCAAAATTGAGCAGGAGGAAGAAGAAG : GATAATGGGTACCCCTAAAGAAGAGGCAACAGATGAAGTTTTCTCTGAGAATTTAGAGCAGAAGCCGGACCCTGACCCTGCAACCAGCAAATTAGAGTTAAAAGCTGATGTTGTTTCTGGTGAACTGCAGAAGAGGCTGAGTCAATGTGATAAAGAGATTAATGTGTCACAATCCAATCAAGAAGCTATTTCTCTTTCTGGAGTACAAGATAACCAGTCAGAAAATGTGCGGAAGCAACAGGTTGTTAAGAGTGAGGCTGATGCATCTGGATCTAGTCAACTTTCTAGTTTACCAAAGGACTCAGATGCAAAATCATGTGGATCAGAATCTAGTGTAAAAGACAAAGTGGTTTCCGTGTTATCTGGTAAAGCTTCAGATTCTTCAGATCAAATGCGTAGTTCGAACATGGAGGTTTTTGTATCACAGTCTGATCTACAACGAGTAAGTTATACCATAAAGCGTGAGAAAGCTTTGGATAAGTTGCAACCAAGGCGGAACCCTGACACTAGTGCCCATGGGTTGACGTCTGATCAAGGAACGACTCTCCTCAAGGCACCTGAAAAACCATCAGAAGATGGATATAACTGGCGAAAATATGGTCAGAAGCTTGTGAAAGGAAATGAGTTTACTCGGAGTTATTACAAGTGCACATTCCCTAATTGTCTAGCAAAAAAGCAAGTGGAGAGATCACATGACGGACATATTACAGATATCCACTATATTGGGAAGCATGAGCATCCGGAAACTCTAAGTGTTCCCCAGATGTCCCCCGAGTATGTACTCCCTTTGCAAATGAAACGGCCAGACATTCCAATTATCACTGCATTAGAAG : CTGAAGGTGAGAAATCTTCTACGCCCCGAGAAACATGTGAACCTAGTAAGCCACCAGAAGCCCCTCTAGCGTTGGCCATTGTATCAGCTTGTGATAGTGTGAAGGTTACGCCTTTGAAGCGATATAAATTAGAAAATGAAGTCGATAAGGGTGATAGTGCAGACTCAAAAAAACAG</gDNA_template>
            <first_frame> L  G  P  S  Q  *  T  A  T  L  F  E  F  L  C  W  L  I  R  R  N  Q  R  N  P  R  *  K  L  G  Q  N  *  A  G  G  R  R  R :   I  M  G  T  P  K  E  E  A  T  D  E  V  F  S  E  N  L  E  Q  K  P  D  P  D  P  A  T  S  K  L  E  L  K  A  D  V  V  S  G  E  L  Q  K  R  L  S  Q  C  D  K  E  I  N  V  S  Q  S  N  Q  E  A  I  S  L  S  G  V  Q  D  N  Q  S  E  N  V  R  K  Q  Q  V  V  K  S  E  A  D  A  S  G  S  S  Q  L  S  S  L  P  K  D  S  D  A  K  S  C  G  S  E  S  S  V  K  D  K  V  V  S  V  L  S  G  K  A  S  D  S  S  D  Q  M  R  S  S  N  M  E  V  F  V  S  Q  S  D  L  Q  R  V  S  Y  T  I  K  R  E  K  A  L  D  K  L  Q  P  R  R  N  P  D  T  S  A  H  G  L  T  S  D  Q  G  T  T  L  L  K  A  P  E  K  P  S  E  D  G  Y  N  W  R  K  Y  G  Q  K  L  V  K  G  N  E  F  T  R  S  Y  Y  K  C  T  F  P  N  C  L  A  K  K  Q  V  E  R  S  H  D  G  H  I  T  D  I  H  Y  I  G  K  H  E  H  P  E  T  L  S  V  P  Q  M  S  P  E  Y  V  L  P  L  Q  M  K  R  P  D  I  P  I  I  T  A  L  E   : A  E  G  E  K  S  S  T  P  R  E  T  C  E  P  S  K  P  P  E  A  P  L  A  L  A  I  V  S  A  C  D  S  V  K  V  T  P  L  K  R  Y  K  L  E  N  E  V  D  K  G  D  S  A  D  S  K  K  Q </first_frame>
            <second_frame>  L  V  Q  V  N  E  Q  L  P  F  L  S  F  S  V  G  *  *  E  G  I  K  E  T  P  G  E  N  W  G  K  I  E  Q  E  E  E  E   : G  *  W  V  P  L  K  K  R  Q  Q  M  K  F  S  L  R  I  *  S  R  S  R  T  L  T  L  Q  P  A  N  *  S  *  K  L  M  L  F  L  V  N  C  R  R  G  *  V  N  V  I  K  R  L  M  C  H  N  P  I  K  K  L  F  L  F  L  E  Y  K  I  T  S  Q  K  M  C  G  S  N  R  L  L  R  V  R  L  M  H  L  D  L  V  N  F  L  V  Y  Q  R  T  Q  M  Q  N  H  V  D  Q  N  L  V  *  K  T  K  W  F  P  C  Y  L  V  K  L  Q  I  L  Q  I  K  C  V  V  R  T  W  R  F  L  Y  H  S  L  I  Y  N  E  *  V  I  P  *  S  V  R  K  L  W  I  S  C  N  Q  G  G  T  L  T  L  V  P  M  G  *  R  L  I  K  E  R  L  S  S  R  H  L  K  N  H  Q  K  M  D  I  T  G  E  N  M  V  R  S  L  *  K  E  M  S  L  L  G  V  I  T  S  A  H  S  L  I  V  *  Q  K  S  K  W  R  D  H  M  T  D  I  L  Q  I  S  T  I  L  G  S  M  S  I  R  K  L  *  V  F  P  R  C  P  P  S  M  Y  S  L  C  K  *  N  G  Q  T  F  Q  L  S  L  H  *  K  :  L  K  V  R  N  L  L  R  P  E  K  H  V  N  L  V  S  H  Q  K  P  L  *  R  W  P  L  Y  Q  L  V  I  V  *  R  L  R  L  *  S  D  I  N  *  K  M  K  S  I  R  V  I  V  Q  T  Q  K  N   </second_frame>
            <third_frame>   W  S  K  S  M  N  S  Y  P  F  *  V  S  L  L  V  D  K  K  E  S  K  K  P  Q  V  K  I  G  A  K  L  S  R  R  K  K  K  :  D  N  G  Y  P  *  R  R  G  N  R  *  S  F  L  *  E  F  R  A  E  A  G  P  *  P  C  N  Q  Q  I  R  V  K  S  *  C  C  F  W  *  T  A  E  E  A  E  S  M  *  *  R  D  *  C  V  T  I  Q  S  R  S  Y  F  S  F  W  S  T  R  *  P  V  R  K  C  A  E  A  T  G  C  *  E  *  G  *  C  I  W  I  *  S  T  F  *  F  T  K  G  L  R  C  K  I  M  W  I  R  I  *  C  K  R  Q  S  G  F  R  V  I  W  *  S  F  R  F  F  R  S  N  A  *  F  E  H  G  G  F  C  I  T  V  *  S  T  T  S  K  L  Y  H  K  A  *  E  S  F  G  *  V  A  T  K  A  E  P  *  H  *  C  P  W  V  D  V  *  S  R  N  D  S  P  Q  G  T  *  K  T  I  R  R  W  I  *  L  A  K  I  W  S  E  A  C  E  R  K  *  V  Y  S  E  L  L  Q  V  H  I  P  *  L  S  S  K  K  A  S  G  E  I  T  *  R  T  Y  Y  R  Y  P  L  Y  W  E  A  *  A  S  G  N  S  K  C  S  P  D  V  P  R  V  C  T  P  F  A  N  E  T  A  R  H  S  N  Y  H  C  I  R  S :   *  R  *  E  I  F  Y  A  P  R  N  M  *  T  *  *  A  T  R  S  P  S  S  V  G  H  C  I  S  L  *  *  C  E  G  Y  A  F  E  A  I  *  I  R  K  *  S  R  *  G  *  *  C  R  L  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5788" stop="5804"/>
                    <exon start="8734" stop="9566"/>
                    <exon start="9644" stop="9819"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGGRRRIMGTPKEEATDEVFSENLEQKPDPDPATSKLELKADVVSGELQKRLSQCDKEINVSQSNQEAISLSGVQDNQSENVRKQQVVKSEADASGSSQLSSLPKDSDAKSCGSESSVKDKVVSVLSGKASDSSDQMRSSNMEVFVSQSDLQRVSYTIKREKALDKLQPRRNPDTSAHGLTSDQGTTLLKAPEKPSEDGYNWRKYGQKLVKGNEFTRSYYKCTFPNCLAKKQVERSHDGHITDIHYIGKHEHPETLSVPQMSPEYVLPLQMKRPDIPIITALEAEGEKSSTPRETCEPSKPPEAPLALAIVSACDSVKVTPLKRYKLENEVDKGDSADSKKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11175" PGL_stop="11858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11175" e_stop="11858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="11175" e_stop="11858" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11175" stop="11858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTGTAGGAGTTACTACCGATGCTCGGTTGCAGGTTGCCCTGTGAAGAAGCATGTGGAGAGGGCATCCCATGATCCAAAATTAGTCATTACAACATATGAAGGACAGCATGTCCATGATTTCCCAACGTCTAGGCCTATAAGCCAAATTTCAGTAGCACCTGATGCCGGTACAGCAGGCATACGTGAAGACTCCAGAACCGAATCAGGTGAAAAGAAACATGTCGTGGAGTCCAAAACTGAATCAGGTGAAATGAAACATATCAGAGAGTCGAAAACTGAAGCAGGTGAAACCAAACATGTCAAAGAGTCCAAAGCCGAATCAGGTGAAAACAAACATGTTGGAGAGTCCAAAACTGAATCAGATGGAAACAAACACGTCGAAGAGTCCAAACCTGAATTGGTTGGAAACAAACATGTCGGAGAGTCCATATCTGAATCGGGTGAAAACAAACATGTTGGTCTTGACATGGCTGTTCATATTGGTGCAAATTGAGTATCAACCATCTTATGCAACAAAACAATCAACTTATGCAGAAGTAGAGTTTCTTACAACACCAGTCTTCCAATCTTACCAAATTTGTTCAATCATTCTCTTCCTGAAGGGGAGAAAAGAAGGTTACATTTCATAGGTACACTTCTTAACTTGTTATTGGCAATGGAGCTGTGTTATCATATATTCACT</gDNA_template>
            <first_frame> I  C  R  S  Y  Y  R  C  S  V  A  G  C  P  V  K  K  H  V  E  R  A  S  H  D  P  K  L  V  I  T  T  Y  E  G  Q  H  V  H  D  F  P  T  S  R  P  I  S  Q  I  S  V  A  P  D  A  G  T  A  G  I  R  E  D  S  R  T  E  S  G  E  K  K  H  V  V  E  S  K  T  E  S  G  E  M  K  H  I  R  E  S  K  T  E  A  G  E  T  K  H  V  K  E  S  K  A  E  S  G  E  N  K  H  V  G  E  S  K  T  E  S  D  G  N  K  H  V  E  E  S  K  P  E  L  V  G  N  K  H  V  G  E  S  I  S  E  S  G  E  N  K  H  V  G  L  D  M  A  V  H  I  G  A  N  *  V  S  T  I  L  C  N  K  T  I  N  L  C  R  S  R  V  S  Y  N  T  S  L  P  I  L  P  N  L  F  N  H  S  L  P  E  G  E  K  R  R  L  H  F  I  G  T  L  L  N  L  L  L  A  M  E  L  C  Y  H  I  F  T </first_frame>
            <second_frame>  S  V  G  V  T  T  D  A  R  L  Q  V  A  L  *  R  S  M  W  R  G  H  P  M  I  Q  N  *  S  L  Q  H  M  K  D  S  M  S  M  I  S  Q  R  L  G  L  *  A  K  F  Q  *  H  L  M  P  V  Q  Q  A  Y  V  K  T  P  E  P  N  Q  V  K  R  N  M  S  W  S  P  K  L  N  Q  V  K  *  N  I  S  E  S  R  K  L  K  Q  V  K  P  N  M  S  K  S  P  K  P  N  Q  V  K  T  N  M  L  E  S  P  K  L  N  Q  M  E  T  N  T  S  K  S  P  N  L  N  W  L  E  T  N  M  S  E  S  P  Y  L  N  R  V  K  T  N  M  L  V  L  T  W  L  F  I  L  V  Q  I  E  Y  Q  P  S  Y  A  T  K  Q  S  T  Y  A  E  V  E  F  L  T  T  P  V  F  Q  S  Y  Q  I  C  S  I  I  L  F  L  K  G  R  K  E  G  Y  I  S  *  V  H  F  L  T  C  Y  W  Q  W  S  C  V  I  I  Y  S   </second_frame>
            <third_frame>   L  *  E  L  L  P  M  L  G  C  R  L  P  C  E  E  A  C  G  E  G  I  P  *  S  K  I  S  H  Y  N  I  *  R  T  A  C  P  *  F  P  N  V  *  A  Y  K  P  N  F  S  S  T  *  C  R  Y  S  R  H  T  *  R  L  Q  N  R  I  R  *  K  E  T  C  R  G  V  Q  N  *  I  R  *  N  E  T  Y  Q  R  V  E  N  *  S  R  *  N  Q  T  C  Q  R  V  Q  S  R  I  R  *  K  Q  T  C  W  R  V  Q  N  *  I  R  W  K  Q  T  R  R  R  V  Q  T  *  I  G  W  K  Q  T  C  R  R  V  H  I  *  I  G  *  K  Q  T  C  W  S  *  H  G  C  S  Y  W  C  K  L  S  I  N  H  L  M  Q  Q  N  N  Q  L  M  Q  K  *  S  F  L  Q  H  Q  S  S  N  L  T  K  F  V  Q  S  F  S  S  *  R  G  E  K  K  V  T  F  H  R  Y  T  S  *  L  V  I  G  N  G  A  V  L  S  Y  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11175" stop="11669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGQHVHDFPTSRPISQISVAPDAGTAGIREDSRTESGEKKHVVESKTESGEMKHIRESKTEAGETKHVKESKAESGENKHVGESKTESDGNKHVEESKPELVGNKHVGESISESGENKHVGLDMAVHIGAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14309" PGL_stop="19375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14309" e_stop="14417"/>
            <exon e_start="14495" e_stop="14590"/>
            <exon e_start="18120" e_stop="18312"/>
            <exon e_start="19000" e_stop="19375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.667" e_score="0.991"/>
          <exon-intron don_prob="0.990" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="14309" e_stop="14417" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.667">
            <gDNA_intron_boundary i_start="14418" i_stop="14494" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14495" e_stop="14590" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.950">
            <gDNA_intron_boundary i_start="14591" i_stop="18119" i_length="3529"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18120" e_stop="18312" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18313" i_stop="18999" i_length="687"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="19000" e_stop="19375" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14309" stop="14417"/>
              <exon start="14495" stop="14590"/>
              <exon start="18120" stop="18312"/>
              <exon start="19000" stop="19375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTAGCTGAAATTTTTTCATTCTTCTCTCTTAGCTTTCCCCAAAAAAAAATATGTAGAAAAATTCAAAAACCCTAAATCAATACAATTTGATTATTATTATTACAAG : GTGAACTCAATTTTAGTTGTATTTTGATTGTGAGAGATGATAGTAAGCAAAGAAAAACCACCAGAACCACTGGATTTCTTCATTTGGACAGTTGAG : GATGTAGGTTTATGGTTAGAAGAAATAAAGCTTGGTAGCTATCGTCAAATTTTCAAAGAAAATGGTGTTAATGGAGAATATTTGGAGGGGATGTCCATGTTCACGACGGAACAGATTCTTCGGTTTATAAGAAGGTGCCACATGAAATGGGGAGACTTCATTACATTGTGCAAGGAGCTGAGGCGGATAAAAG : TGGCTTGCTTGAAGGGAGAACAAAGAGTCCGGCGACCATGGTGGGCCCCGTCTTGTATCTCCGTAGTGTTTATGAAGACGGCCAAGCGTAACAGGCAGTGTAGAGTGGTTTCACTGAAGCTGGAACCTTAGACACTAATTACGCCATCTTTGCGCATCATTAGTTATAATATGTCCAGAGAAGTGAAAAATCGATCCCCGTCAGTTATTTTCCTTGTAATCCCCCTCTTCTGCCCAAGCTTTTATGTATACATAAGGTTGTAGTCTTTACATTTTTAGTTTGTGATGTTTATAGTATCAAATCAAGAAAATAGATGACTTTTATGTAAATTTCAATGTGTAATGTGTGAATAGTTTCTAAACTTGAATTGTAAGCC</gDNA_template>
            <first_frame> K  L  A  E  I  F  S  F  F  S  L  S  F  P  Q  K  K  I  C  R  K  I  Q  K  P  *  I  N  T  I  *  L  L  L  L  Q   : G  E  L  N  F  S  C  I  L  I  V  R  D  D  S  K  Q  R  K  T  T  R  T  T  G  F  L  H  L  D  S  *   : G  C  R  F  M  V  R  R  N  K  A  W  *  L  S  S  N  F  Q  R  K  W  C  *  W  R  I  F  G  G  D  V  H  V  H  D  G  T  D  S  S  V  Y  K  K  V  P  H  E  M  G  R  L  H  Y  I  V  Q  G  A  E  A  D  K  S :   G  L  L  E  G  R  T  K  S  P  A  T  M  V  G  P  V  L  Y  L  R  S  V  Y  E  D  G  Q  A  *  Q  A  V  *  S  G  F  T  E  A  G  T  L  D  T  N  Y  A  I  F  A  H  H  *  L  *  Y  V  Q  R  S  E  K  S  I  P  V  S  Y  F  P  C  N  P  P  L  L  P  K  L  L  C  I  H  K  V  V  V  F  T  F  L  V  C  D  V  Y  S  I  K  S  R  K  *  M  T  F  M  *  I  S  M  C  N  V  *  I  V  S  K  L  E  L  *  A </first_frame>
            <second_frame>  N  *  L  K  F  F  H  S  S  L  L  A  F  P  K  K  K  Y  V  E  K  F  K  N  P  K  S  I  Q  F  D  Y  Y  Y  Y  K  :  V  N  S  I  L  V  V  F  *  L  *  E  M  I  V  S  K  E  K  P  P  E  P  L  D  F  F  I  W  T  V  E  :  D  V  G  L  W  L  E  E  I  K  L  G  S  Y  R  Q  I  F  K  E  N  G  V  N  G  E  Y  L  E  G  M  S  M  F  T  T  E  Q  I  L  R  F  I  R  R  C  H  M  K  W  G  D  F  I  T  L  C  K  E  L  R  R  I  K   : V  A  C  L  K  G  E  Q  R  V  R  R  P  W  W  A  P  S  C  I  S  V  V  F  M  K  T  A  K  R  N  R  Q  C  R  V  V  S  L  K  L  E  P  *  T  L  I  T  P  S  L  R  I  I  S  Y  N  M  S  R  E  V  K  N  R  S  P  S  V  I  F  L  V  I  P  L  F  C  P  S  F  Y  V  Y  I  R  L  *  S  L  H  F  *  F  V  M  F  I  V  S  N  Q  E  N  R  *  L  L  C  K  F  Q  C  V  M  C  E  *  F  L  N  L  N  C  K   </second_frame>
            <third_frame>   I  S  *  N  F  F  I  L  L  S  *  L  S  P  K  K  N  M  *  K  N  S  K  T  L  N  Q  Y  N  L  I  I  I  I  T  R :   *  T  Q  F  *  L  Y  F  D  C  E  R  *  *  *  A  K  K  N  H  Q  N  H  W  I  S  S  F  G  Q  L  R :   M  *  V  Y  G  *  K  K  *  S  L  V  A  I  V  K  F  S  K  K  M  V  L  M  E  N  I  W  R  G  C  P  C  S  R  R  N  R  F  F  G  L  *  E  G  A  T  *  N  G  E  T  S  L  H  C  A  R  S  *  G  G  *  K  :  W  L  A  *  R  E  N  K  E  S  G  D  H  G  G  P  R  L  V  S  P  *  C  L  *  R  R  P  S  V  T  G  S  V  E  W  F  H  *  S  W  N  L  R  H  *  L  R  H  L  C  A  S  L  V  I  I  C  P  E  K  *  K  I  D  P  R  Q  L  F  S  L  *  S  P  S  S  A  Q  A  F  M  Y  T  *  G  C  S  L  Y  I  F  S  L  *  C  L  *  Y  Q  I  K  K  I  D  D  F  Y  V  N  F  N  V  *  C  V  N  S  F  *  T  *  I  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14528" stop="14590"/>
                    <exon start="18120" stop="18312"/>
                    <exon start="19000" stop="19130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMIVSKEKPPEPLDFFIWTVEDVGLWLEEIKLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQRVRRPWWAPSCISVVFMKTAKRNRQCRVVSLKLEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30039" PGL_stop="32051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30039" e_stop="30200"/>
            <exon e_start="30769" e_stop="31543"/>
            <exon e_start="32038" e_stop="32051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.857" e_score="0.994"/>
          <exon-intron don_prob="0.784" acc_prob="0.999" e_score="0.985"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="30039" e_stop="30200" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.857">
            <gDNA_intron_boundary i_start="30201" i_stop="30768" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="30769" e_stop="31543" e_length="775"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31544" i_stop="32037" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="32038" e_stop="32051" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30039" stop="30200"/>
              <exon start="30769" stop="31543"/>
              <exon start="32038" stop="32049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31213" stop="31543"/>
              <exon start="32038" stop="32051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAAAAATAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATG : GTATGGAGAAGATAGGCCAAAGTACTTGGGACCATTTTCTGAGCAAACACCATCATACTTGACTGGTGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGACTCTCAGCTGACCCTGAGACATTTGCAAGGAACCGTGAGCTTGAGGTGATACATTGTCGTTGGGCTATGCTTGGTGCTTTGGGGTGTGTTTTCCCTGAAATATTGTCTAAGAATGGTGTTACATTTGGTGAAGCTGTTTGGTTCAAGGCTGGATCTCAAATTTTCTCCGAAGGCGGTCTTGACTACCTTGGTAACCCAAACCTTATCCATGCTCAGAGCATACTTGCCATTTGGGCATCACAAGTTGTGTTAATGGGCTTTGTTGAAGGATATAGAGTTGGTGGAGGTCCATTAGGTGAAGGCCTCGACAAGATCTACCCGGGGGGTGCTTTCGACCCACTGGGCCTTGCTGATGATCCGGAGGCATTTGCTGAGTTGAAGGTCAAGGAAATCAAGAATGGACGATTAGCTATGTTCTCGATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGAAAAGGTCCAATTGAGAACCTTTCCGACCACATTGCTGATCCAGTTGCCAACAATGCTTGGGCTTACGCCACAAACTTTGTACCCGGAAAATGAACTTAGTACACTCTTTTATCTGTAAAAATTGTGAAGCTACTGCATGTCTTTTATGTAATCATATATATGCAAAAGCCAAGACTACATAATCTTCAAATTTAATCACTCTGCTCATTTCAATTC : CAGAACAATTGAAG</gDNA_template>
            <first_frame> Q  K  K  *  K  N  G  Y  F  C  N  S  T  F  C  I  C  W  P  N  S  T  *  V  T  K  *  I  Y  *  E  N  W  *  L  *  R  W  T  C  H  H  A  T  Y  C  Q  K  C  T  T  K  H  M  :  V  W  R  R  *  A  K  V  L  G  T  I  F  *  A  N  T  I  I  L  D  W  *  V  S  R  *  L  W  M  G  H  C  W  T  L  S  *  P  *  D  I  C  K  E  P  *  A  *  G  D  T  L  S  L  G  Y  A  W  C  F  G  V  C  F  P  *  N  I  V  *  E  W  C  Y  I  W  *  S  C  L  V  Q  G  W  I  S  N  F  L  R  R  R  S  *  L  P  W  *  P  K  P  Y  P  C  S  E  H  T  C  H  L  G  I  T  S  C  V  N  G  L  C  *  R  I  *  S  W  W  R  S  I  R  *  R  P  R  Q  D  L  P  G  G  C  F  R  P  T  G  P  C  *  *  S  G  G  I  C  *  V  E  G  Q  G  N  Q  E  W  T  I  S  Y  V  L  D  V  W  F  L  C  S  S  Y  C  Y  W  K  R  S  N  *  E  P  F  R  P  H  C  *  S  S  C  Q  Q  C  L  G  L  R  H  K  L  C  T  R  K  M  N  L  V  H  S  F  I  C  K  N  C  E  A  T  A  C  L  L  C  N  H  I  Y  A  K  A  K  T  T  *  S  S  N  L  I  T  L  L  I  S  I   : P  E  Q  L  K </first_frame>
            <second_frame>  K  K  N  K  K  M  A  T  S  A  I  Q  H  S  A  F  A  G  Q  T  A  L  K  S  Q  N  E  F  I  R  K  I  G  S  F  E  G  G  R  V  T  M  R  R  T  V  K  S  A  P  Q  S  I  W :   Y  G  E  D  R  P  K  Y  L  G  P  F  S  E  Q  T  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  R  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  I  L  S  K  N  G  V  T  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  N  L  I  H  A  Q  S  I  L  A  I  W  A  S  Q  V  V  L  M  G  F  V  E  G  Y  R  V  G  G  G  P  L  G  E  G  L  D  K  I  Y  P  G  G  A  F  D  P  L  G  L  A  D  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  I  E  N  L  S  D  H  I  A  D  P  V  A  N  N  A  W  A  Y  A  T  N  F  V  P  G  K  *  T  *  Y  T  L  L  S  V  K  I  V  K  L  L  H  V  F  Y  V  I  I  Y  M  Q  K  P  R  L  H  N  L  Q  I  *  S  L  C  S  F  Q  F  :  Q  N  N  *   </second_frame>
            <third_frame>   K  K  I  K  K  W  L  L  L  Q  F  N  I  L  H  L  L  A  K  Q  H  L  S  H  K  M  N  L  L  G  K  L  V  A  L  K  V  D  V  S  P  C  D  V  L  S  K  V  H  H  K  A  Y   : G  M  E  K  I  G  Q  S  T  W  D  H  F  L  S  K  H  H  H  T  *  L  V  S  F  Q  V  T  M  D  G  T  L  L  D  S  Q  L  T  L  R  H  L  Q  G  T  V  S  L  R  *  Y  I  V  V  G  L  C  L  V  L  W  G  V  F  S  L  K  Y  C  L  R  M  V  L  H  L  V  K  L  F  G  S  R  L  D  L  K  F  S  P  K  A  V  L  T  T  L  V  T  Q  T  L  S  M  L  R  A  Y  L  P  F  G  H  H  K  L  C  *  W  A  L  L  K  D  I  E  L  V  E  V  H  *  V  K  A  S  T  R  S  T  R  G  V  L  S  T  H  W  A  L  L  M  I  R  R  H  L  L  S  *  R  S  R  K  S  R  M  D  D  *  L  C  S  R  C  L  V  S  L  F  K  L  L  L  L  E  K  V  Q  L  R  T  F  P  T  T  L  L  I  Q  L  P  T  M  L  G  L  T  P  Q  T  L  Y  P  E  N  E  L  S  T  L  F  Y  L  *  K  L  *  S  Y  C  M  S  F  M  *  S  Y  I  C  K  S  Q  D  Y  I  I  F  K  F  N  H  S  A  H  F  N  S :   R  T  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30040" stop="30200"/>
                    <exon start="30769" stop="31420"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNKKMATSAIQHSAFAGQTALKSQNEFIRKIGSFEGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30046" e_stop="30452"/>
            <exon e_start="30587" e_stop="30654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="30046" e_stop="30452" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30453" i_stop="30586" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="30587" e_stop="30654" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30046" stop="30452"/>
              <exon start="30587" stop="30654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAAAAAATGGCTACTTCTGCAATTCAACATTCTGCATTTGCTGGCCAAACAGCACTTAAGTCACAAAATGAATTTATTAGGAAAATTGGTAGCTTTGAAGGTGGACGTGTCACCATGCGACGTACTGTCAAAAGTGCACCACAAAGCATATGGTAATTTTTTTAATTTATCATTTACTATATTTTCAATCATATTATTGTTAATTTTTAATGAATTATTCATTGTTCATTTAGTCATATTATTATTTCCATATTTTTAAATAAAAATGGAAAAACAATGCAAAACCTTGAAATAATCATGTCAACTACTATTTTGTGACATAGAAATATAATGTCTTTAGTGTTGATTATAGGCATAATAAATACGTGTATCCTTTAATTTGGTCTCATTTCATGTTTATGTCC : TTTAAGTATCTACTATTGCTCACGCAAAGTTAAACGACATAAATGTGATTTGAAGTCAAGTTAAAGAC</gDNA_template>
            <first_frame> N  K  K  M  A  T  S  A  I  Q  H  S  A  F  A  G  Q  T  A  L  K  S  Q  N  E  F  I  R  K  I  G  S  F  E  G  G  R  V  T  M  R  R  T  V  K  S  A  P  Q  S  I  W  *  F  F  *  F  I  I  Y  Y  I  F  N  H  I  I  V  N  F  *  *  I  I  H  C  S  F  S  H  I  I  I  S  I  F  L  N  K  N  G  K  T  M  Q  N  L  E  I  I  M  S  T  T  I  L  *  H  R  N  I  M  S  L  V  L  I  I  G  I  I  N  T  C  I  L  *  F  G  L  I  S  C  L  C  P :   L  S  I  Y  Y  C  S  R  K  V  K  R  H  K  C  D  L  K  S  S  *  R  </first_frame>
            <second_frame>  I  K  K  W  L  L  L  Q  F  N  I  L  H  L  L  A  K  Q  H  L  S  H  K  M  N  L  L  G  K  L  V  A  L  K  V  D  V  S  P  C  D  V  L  S  K  V  H  H  K  A  Y  G  N  F  F  N  L  S  F  T  I  F  S  I  I  L  L  L  I  F  N  E  L  F  I  V  H  L  V  I  L  L  F  P  Y  F  *  I  K  M  E  K  Q  C  K  T  L  K  *  S  C  Q  L  L  F  C  D  I  E  I  *  C  L  *  C  *  L  *  A  *  *  I  R  V  S  F  N  L  V  S  F  H  V  Y  V   : L  *  V  S  T  I  A  H  A  K  L  N  D  I  N  V  I  *  S  Q  V  K  D </second_frame>
            <third_frame>   *  K  N  G  Y  F  C  N  S  T  F  C  I  C  W  P  N  S  T  *  V  T  K  *  I  Y  *  E  N  W  *  L  *  R  W  T  C  H  H  A  T  Y  C  Q  K  C  T  T  K  H  M  V  I  F  L  I  Y  H  L  L  Y  F  Q  S  Y  Y  C  *  F  L  M  N  Y  S  L  F  I  *  S  Y  Y  Y  F  H  I  F  K  *  K  W  K  N  N  A  K  P  *  N  N  H  V  N  Y  Y  F  V  T  *  K  Y  N  V  F  S  V  D  Y  R  H  N  K  Y  V  Y  P  L  I  W  S  H  F  M  F  M  S  :  F  K  Y  L  L  L  L  T  Q  S  *  T  T  *  M  *  F  E  V  K  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30047" stop="30307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKWLLLQFNILHLLAKQHLSHKMNLLGKLVALKVDVSPCDVLSKVHHKAYGNFFNLSFTIFSIILLLIFNELFIVHLVILLFPYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41175" PGL_stop="42379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41175" e_stop="42379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="41175" e_stop="42379" e_length="1205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41175" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41872" stop="42379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTCTCTCATCTCTCTCTCTCCCCGGCCGGAAAATATTTCCCGGCGAACGTTTCTCCCTAATTTTGGTCTGTCGGTTTTTGTTCCATCTGTTTGTATACAATTTGTATTTTTCTCGCCGGAGAATCTACTTCCCCCTTTTAAATTCTCGCCGGAAAATCCAAACCCAGTTAACATTTCCGGTACGGTGATAAAGGTTTTTTTTTTCGTTTTTGTTGTTTTAGCAGTTTTTTCTGGAGTACCGTTTTTTTGAATTTGGAGAATTTGGGGATTGGCGATGGCTGATTCAGACAACGAATCAGGAGGTCACAATAACGCGAACAGTGAAGGATCAACAAGGGAACAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGAATTATGAAGAAAGCTTTACCGGCGAACGCGAAAATTTCGAAGGATGCTAAGGAAACAGTTCAAGAGTGTGTATCGGAATTTATCAGTTTCATTACCGGAGAAGCATCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCTATGACAACTTTAGGATTCGAAGAGTATGTTGAGCCATTGAAGATTTACTTGGCCAAGTACAGAGAAATGGAAGGGGAAAAAACTACTATGGGTCGTACAGGGGAGAAAGATGGGGGTGGTGGAGATACGGCGGGAGGTGGTGGTGGTGGTGTTAGTTCTGGGGGTGGGTATAACGGTGGTGGCGGCGGCATGTATGGTGGTATGGGTGGTTCCATGATGTATCATCCTCAAGGTGGTCATCAAATGTATGGTAGTCATGGGTCATATAATCATATGGGTATGGGTGGCGGCGGCGGTGGCGGTGGTTCCGGTGCCGGAGGTTCCGGTCAAGGGCGGAGATAGATTCTATAAACTTCAAATTTTGAATCGATAACGAGCCAAAGTAGGTGGTAGTGGAAGTTTCAGAATATAATAAACATCAAAATTCTGAATAGATAATGGACCAAAAAGTATACGGTAATTGAGGAGGTGGAGGTTTCAGAATATTATAAACTTTAAATTCTGACTTAACAATGAGCCAAAGTAACGATGATTGTGATGGTGGATTTATATTATGAACTTTAAATCCTGGCTTAAGCAACTATGATTGTAACGATGAAACAATGATTATGATGGTGAAATTATATTATAAGCTTTAAATTCTGACTTTGCGATTCGAT</gDNA_template>
            <first_frame> L  F  S  L  I  S  L  S  P  R  P  E  N  I  S  R  R  T  F  L  P  N  F  G  L  S  V  F  V  P  S  V  C  I  Q  F  V  F  F  S  P  E  N  L  L  P  P  F  K  F  S  P  E  N  P  N  P  V  N  I  S  G  T  V  I  K  V  F  F  F  V  F  V  V  L  A  V  F  S  G  V  P  F  F  *  I  W  R  I  W  G  L  A  M  A  D  S  D  N  E  S  G  G  H  N  N  A  N  S  E  G  S  T  R  E  Q  D  R  F  L  P  I  A  N  V  S  R  I  M  K  K  A  L  P  A  N  A  K  I  S  K  D  A  K  E  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  G  E  A  S  D  K  C  Q  R  E  K  R  K  T  I  N  G  D  D  L  L  W  A  M  T  T  L  G  F  E  E  Y  V  E  P  L  K  I  Y  L  A  K  Y  R  E  M  E  G  E  K  T  T  M  G  R  T  G  E  K  D  G  G  G  G  D  T  A  G  G  G  G  G  G  V  S  S  G  G  G  Y  N  G  G  G  G  G  M  Y  G  G  M  G  G  S  M  M  Y  H  P  Q  G  G  H  Q  M  Y  G  S  H  G  S  Y  N  H  M  G  M  G  G  G  G  G  G  G  G  S  G  A  G  G  S  G  Q  G  R  R  *  I  L  *  T  S  N  F  E  S  I  T  S  Q  S  R  W  *  W  K  F  Q  N  I  I  N  I  K  I  L  N  R  *  W  T  K  K  Y  T  V  I  E  E  V  E  V  S  E  Y  Y  K  L  *  I  L  T  *  Q  *  A  K  V  T  M  I  V  M  V  D  L  Y  Y  E  L  *  I  L  A  *  A  T  M  I  V  T  M  K  Q  *  L  *  W  *  N  Y  I  I  S  F  K  F  *  L  C  D  S   </first_frame>
            <second_frame>  F  S  L  S  S  L  S  L  P  G  R  K  I  F  P  G  E  R  F  S  L  I  L  V  C  R  F  L  F  H  L  F  V  Y  N  L  Y  F  S  R  R  R  I  Y  F  P  L  L  N  S  R  R  K  I  Q  T  Q  L  T  F  P  V  R  *  *  R  F  F  F  S  F  L  L  F  *  Q  F  F  L  E  Y  R  F  F  E  F  G  E  F  G  D  W  R  W  L  I  Q  T  T  N  Q  E  V  T  I  T  R  T  V  K  D  Q  Q  G  N  K  T  G  S  F  R  *  Q  T  *  A  E  L  *  R  K  L  Y  R  R  T  R  K  F  R  R  M  L  R  K  Q  F  K  S  V  Y  R  N  L  S  V  S  L  P  E  K  H  R  T  S  V  R  E  R  R  G  R  R  L  T  V  M  I  C  F  G  L  *  Q  L  *  D  S  K  S  M  L  S  H  *  R  F  T  W  P  S  T  E  K  W  K  G  K  K  L  L  W  V  V  Q  G  R  K  M  G  V  V  E  I  R  R  E  V  V  V  V  V  L  V  L  G  V  G  I  T  V  V  A  A  A  C  M  V  V  W  V  V  P  *  C  I  I  L  K  V  V  I  K  C  M  V  V  M  G  H  I  I  I  W  V  W  V  A  A  A  V  A  V  V  P  V  P  E  V  P  V  K  G  G  D  R  F  Y  K  L  Q  I  L  N  R  *  R  A  K  V  G  G  S  G  S  F  R  I  *  *  T  S  K  F  *  I  D  N  G  P  K  S  I  R  *  L  R  R  W  R  F  Q  N  I  I  N  F  K  F  *  L  N  N  E  P  K  *  R  *  L  *  W  W  I  Y  I  M  N  F  K  S  W  L  K  Q  L  *  L  *  R  *  N  N  D  Y  D  G  E  I  I  L  *  A  L  N  S  D  F  A  I  R  </second_frame>
            <third_frame>   F  L  S  H  L  S  L  S  P  A  G  K  Y  F  P  A  N  V  S  P  *  F  W  S  V  G  F  C  S  I  C  L  Y  T  I  C  I  F  L  A  G  E  S  T  S  P  F  *  I  L  A  G  K  S  K  P  S  *  H  F  R  Y  G  D  K  G  F  F  F  R  F  C  C  F  S  S  F  F  W  S  T  V  F  L  N  L  E  N  L  G  I  G  D  G  *  F  R  Q  R  I  R  R  S  Q  *  R  E  Q  *  R  I  N  K  G  T  R  Q  V  P  S  D  S  K  R  E  Q  N  Y  E  E  S  F  T  G  E  R  E  N  F  E  G  C  *  G  N  S  S  R  V  C  I  G  I  Y  Q  F  H  Y  R  R  S  I  G  Q  V  S  E  R  E  E  E  D  D  *  R  *  *  F  A  L  G  Y  D  N  F  R  I  R  R  V  C  *  A  I  E  D  L  L  G  Q  V  Q  R  N  G  R  G  K  N  Y  Y  G  S  Y  R  G  E  R  W  G  W  W  R  Y  G  G  R  W  W  W  W  C  *  F  W  G  W  V  *  R  W  W  R  R  H  V  W  W  Y  G  W  F  H  D  V  S  S  S  R  W  S  S  N  V  W  *  S  W  V  I  *  S  Y  G  Y  G  W  R  R  R  W  R  W  F  R  C  R  R  F  R  S  R  A  E  I  D  S  I  N  F  K  F  *  I  D  N  E  P  K  *  V  V  V  E  V  S  E  Y  N  K  H  Q  N  S  E  *  I  M  D  Q  K  V  Y  G  N  *  G  G  G  G  F  R  I  L  *  T  L  N  S  D  L  T  M  S  Q  S  N  D  D  C  D  G  G  F  I  L  *  T  L  N  P  G  L  S  N  Y  D  C  N  D  E  T  M  I  M  M  V  K  L  Y  Y  K  L  *  I  L  T  L  R  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41430" stop="42062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWRIWGLAMADSDNESGGHNNANSEGSTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLAKYREMEGEKTTMGRTGEKDGGGGDTAGGGGGGVSSGGGYNGGGGGMYGGMGGSMMYHPQGGHQMYGSHGSYNHMGMGGGGGGGGSGAGGSGQGRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41175" stop="41429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLISLSPRPENISRRTFLPNFGLSVFVPSVCIQFVFFSPENLLPPFKFSPENPNPVNISGTVIKVFFFVFVVLAVFSGVPFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="66203" PGL_stop="64121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66203" e_stop="66024"/>
            <exon e_start="65073" e_stop="64897"/>
            <exon e_start="64518" e_stop="64121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.906"/>
          <exon-intron don_prob="0.997" acc_prob="0.861" e_score="0.989"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="66203" e_stop="66024" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="66023" i_stop="65074" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="65073" e_stop="64897" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.861">
            <gDNA_intron_boundary i_start="64896" i_stop="64519" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="64518" e_stop="64121" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66203" stop="66024"/>
              <exon start="65073" stop="64897"/>
              <exon start="64518" stop="64121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGAAAAAGAGAGAGAGATTCTCTCTCTTTTTTTTTTCCTTTATTAAAAAAAGGCTCTCCCCTTTTTTTTCTAACTAAAAGAAAAAAAAATTGAAATTAATTCTTTTTAAAAATACATAATCAAATCAATCATTTCCAGAAACAATTTCTCTATTTCCAAACTCGAAATTGATGGAG : GAAGCAGGACGACCACTTCCAAAATTCGGTGAGTGGGATGTCAATGATCCAGCTACAGCTGAGGGGTTCACGGTGATCTTTAACAAAGCTAGAAATGAGAAAAGGTCAGGTGGAAAGGCAGACGCGCCACCAAAGAGTAACCACAAGCATACAGCAACTCTTGGGAAGCCTCAATCT : AAGAAATGGTTCTGCTGTATGCGGTCTGGTGCTGTTGAGTGATGAACTCTGTCAAACTATGATGGATCGATCTCGGTGGGATAAAACACTGTCATTTATAAACAACTGAAATGAAAGTACTGTGTTTTGCTACCAGAACATATTGCTGCATCTGTGCTTAACTTTTTTCTAGTTTCGAGTTTATAATAATCGATTATCTTCCCATTTTCTTGTCAAGGCTTTGGGAGGTTGGTTTTTGTTGTCATTACTTTTACCTGTGTTTCTCGATTGACATTTCCTTTCAATGATCGCAAATATCTGAACCAGTGCAGACGTCTAAGCTGTATGTATGCTCAATGAAATCAAATGTCGGATTCAAAATTTAAACACTGTACATTTTTGAGTTGAGAGAGCGAGTT</gDNA_template>
            <first_frame> R  K  K  K  R  E  R  F  S  L  F  F  F  S  F  I  K  K  R  L  S  P  F  F  S  N  *  K  K  K  K  L  K  L  I  L  F  K  N  T  *  S  N  Q  S  F  P  E  T  I  S  L  F  P  N  S  K  L  M  E  :  E  A  G  R  P  L  P  K  F  G  E  W  D  V  N  D  P  A  T  A  E  G  F  T  V  I  F  N  K  A  R  N  E  K  R  S  G  G  K  A  D  A  P  P  K  S  N  H  K  H  T  A  T  L  G  K  P  Q  S  :  K  K  W  F  C  C  M  R  S  G  A  V  E  *  *  T  L  S  N  Y  D  G  S  I  S  V  G  *  N  T  V  I  Y  K  Q  L  K  *  K  Y  C  V  L  L  P  E  H  I  A  A  S  V  L  N  F  F  L  V  S  S  L  *  *  S  I  I  F  P  F  S  C  Q  G  F  G  R  L  V  F  V  V  I  T  F  T  C  V  S  R  L  T  F  P  F  N  D  R  K  Y  L  N  Q  C  R  R  L  S  C  M  Y  A  Q  *  N  Q  M  S  D  S  K  F  K  H  C  T  F  L  S  *  E  S  E   </first_frame>
            <second_frame>  E  R  K  R  E  R  D  S  L  S  F  F  F  P  L  L  K  K  G  S  P  L  F  F  L  T  K  R  K  K  N  *  N  *  F  F  L  K  I  H  N  Q  I  N  H  F  Q  K  Q  F  L  Y  F  Q  T  R  N  *  W  R :   K  Q  D  D  H  F  Q  N  S  V  S  G  M  S  M  I  Q  L  Q  L  R  G  S  R  *  S  L  T  K  L  E  M  R  K  G  Q  V  E  R  Q  T  R  H  Q  R  V  T  T  S  I  Q  Q  L  L  G  S  L  N  L :   R  N  G  S  A  V  C  G  L  V  L  L  S  D  E  L  C  Q  T  M  M  D  R  S  R  W  D  K  T  L  S  F  I  N  N  *  N  E  S  T  V  F  C  Y  Q  N  I  L  L  H  L  C  L  T  F  F  *  F  R  V  Y  N  N  R  L  S  S  H  F  L  V  K  A  L  G  G  W  F  L  L  S  L  L  L  P  V  F  L  D  *  H  F  L  S  M  I  A  N  I  *  T  S  A  D  V  *  A  V  C  M  L  N  E  I  K  C  R  I  Q  N  L  N  T  V  H  F  *  V  E  R  A  S  </second_frame>
            <third_frame>   K  E  K  E  R  E  I  L  S  L  F  F  F  L  Y  *  K  K  A  L  P  F  F  F  *  L  K  E  K  K  I  E  I  N  S  F  *  K  Y  I  I  K  S  I  I  S  R  N  N  F  S  I  S  K  L  E  I  D  G   : G  S  R  T  T  T  S  K  I  R  *  V  G  C  Q  *  S  S  Y  S  *  G  V  H  G  D  L  *  Q  S  *  K  *  E  K  V  R  W  K  G  R  R  A  T  K  E  *  P  Q  A  Y  S  N  S  W  E  A  S  I   : *  E  M  V  L  L  Y  A  V  W  C  C  *  V  M  N  S  V  K  L  *  W  I  D  L  G  G  I  K  H  C  H  L  *  T  T  E  M  K  V  L  C  F  A  T  R  T  Y  C  C  I  C  A  *  L  F  S  S  F  E  F  I  I  I  D  Y  L  P  I  F  L  S  R  L  W  E  V  G  F  C  C  H  Y  F  Y  L  C  F  S  I  D  I  S  F  Q  *  S  Q  I  S  E  P  V  Q  T  S  K  L  Y  V  C  S  M  K  S  N  V  G  F  K  I  *  T  L  Y  I  F  E  L  R  E  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66080" stop="66024"/>
                    <exon start="65073" stop="64897"/>
                    <exon start="64518" stop="64477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNQSFPETISLFPNSKLMEEAGRPLPKFGEWDVNDPATAEGFTVIFNKARNEKRSGGKADAPPKSNHKHTATLGKPQSKKWFCCMRSGAVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64997" stop="64897"/>
                    <exon start="64518" stop="64410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTKLEMRKGQVERQTRHQRVTTSIQQLLGSLNLRNGSAVCGLVLLSDELCQTMMDRSRWDKTLSFINN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="73017" PGL_stop="69927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73017" e_stop="73005"/>
            <exon e_start="72929" e_stop="72644"/>
            <exon e_start="71004" e_stop="70926"/>
            <exon e_start="70065" e_stop="69927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.666" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73017" e_stop="73005" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.666" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73004" i_stop="72930" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72929" e_stop="72644" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72643" i_stop="71005" i_length="1639"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71004" e_stop="70926" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.833">
            <gDNA_intron_boundary i_start="70925" i_stop="70066" i_length="860"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70065" e_stop="69927" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73017" stop="73005"/>
              <exon start="72929" stop="72644"/>
              <exon start="71004" stop="70926"/>
              <exon start="70065" stop="69927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTACAACAGAAG : CAACAGACTATAGCAGGCATAGGGATCATGATAAAGATCTAGGAGGGCAATGCTCAAATTATCATCTCATGCTAGTCGAGAACTTGGAGAGAACCTTGTTCCCTTCGTCATTGAGAGATTTCATACATAAGCACACTTCTGTTTGGTCACAAGCATATATTTACCCGTGCCCGTCATATATGCCCTATGCACGAGGCATCATCGTGGTAGATTGTGAAGAGAAGCTTAAAAAAATAAACCGGTTTTTGGACAATCCAGCGCACCTTGTTGTGTCCTCAAAGGGAAG : GCCGATGGTTATAAGTGAAATAGATATGAGACAATCCATGATTAAGACATCGCTTGGGAGCTTAATGTACAGTTCCCAG : GATGTATATCAGGCAAAAAGTATCTGCCAAGACTTGATAATAGTAAAAACAGGAACTGAAGCATACAGAAAAGCAAAGCAGGCAAAAGATTTATTTTTGGAGTTTGTAAGTCATCAACAGAGACTCTATAAGAAGTTAG</gDNA_template>
            <first_frame> C  T  T  E   : A  T  D  Y  S  R  H  R  D  H  D  K  D  L  G  G  Q  C  S  N  Y  H  L  M  L  V  E  N  L  E  R  T  L  F  P  S  S  L  R  D  F  I  H  K  H  T  S  V  W  S  Q  A  Y  I  Y  P  C  P  S  Y  M  P  Y  A  R  G  I  I  V  V  D  C  E  E  K  L  K  K  I  N  R  F  L  D  N  P  A  H  L  V  V  S  S  K  G  R :   P  M  V  I  S  E  I  D  M  R  Q  S  M  I  K  T  S  L  G  S  L  M  Y  S  S  Q  :  D  V  Y  Q  A  K  S  I  C  Q  D  L  I  I  V  K  T  G  T  E  A  Y  R  K  A  K  Q  A  K  D  L  F  L  E  F  V  S  H  Q  Q  R  L  Y  K  K  L  </first_frame>
            <second_frame>  V  Q  Q  K  :  Q  Q  T  I  A  G  I  G  I  M  I  K  I  *  E  G  N  A  Q  I  I  I  S  C  *  S  R  T  W  R  E  P  C  S  L  R  H  *  E  I  S  Y  I  S  T  L  L  F  G  H  K  H  I  F  T  R  A  R  H  I  C  P  M  H  E  A  S  S  W  *  I  V  K  R  S  L  K  K  *  T  G  F  W  T  I  Q  R  T  L  L  C  P  Q  R  E   : G  R  W  L  *  V  K  *  I  *  D  N  P  *  L  R  H  R  L  G  A  *  C  T  V  P  R :   M  Y  I  R  Q  K  V  S  A  K  T  *  *  *  *  K  Q  E  L  K  H  T  E  K  Q  S  R  Q  K  I  Y  F  W  S  L  *  V  I  N  R  D  S  I  R  S  * </second_frame>
            <third_frame>   Y  N  R  S :   N  R  L  *  Q  A  *  G  S  *  *  R  S  R  R  A  M  L  K  L  S  S  H  A  S  R  E  L  G  E  N  L  V  P  F  V  I  E  R  F  H  T  *  A  H  F  C  L  V  T  S  I  Y  L  P  V  P  V  I  Y  A  L  C  T  R  H  H  R  G  R  L  *  R  E  A  *  K  N  K  P  V  F  G  Q  S  S  A  P  C  C  V  L  K  G  K  :  A  D  G  Y  K  *  N  R  Y  E  T  I  H  D  *  D  I  A  W  E  L  N  V  Q  F  P   : G  C  I  S  G  K  K  Y  L  P  R  L  D  N  S  K  N  R  N  *  S  I  Q  K  S  K  A  G  K  R  F  I  F  G  V  C  K  S  S  T  E  T  L  *  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73017" stop="73005"/>
                    <exon start="72929" stop="72644"/>
                    <exon start="71004" stop="70926"/>
                    <exon start="70065" stop="69928"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTTEATDYSRHRDHDKDLGGQCSNYHLMLVENLERTLFPSSLRDFIHKHTSVWSQAYIYPCPSYMPYARGIIVVDCEEKLKKINRFLDNPAHLVVSSKGRPMVISEIDMRQSMIKTSLGSLMYSSQDVYQAKSICQDLIIVKTGTEAYRKAKQAKDLFLEFVSHQQRLYKKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77166" PGL_stop="73310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77166" e_stop="76415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="77166" e_stop="76415" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77166" stop="76415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTTCATTTTCCCACAGTTTTCAAATATACGTATACATACGGTCGAAGTTTCTAGAAGATTTGATGAATTTACCGGTGCCGGAAATGAAAAAGCCCGACGGAAATCCGGCGAAGTACGATTTAGAGCATCGGTACAAGGGAGATGACTCATGGTACGGTGTGCTAGTGACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAGGATAATGAATGCAGTAGTGTTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTTGGCAAAGATGATATGCTCTTCTACGATGCCGTTGTTGAAGCGGTAAGTTATGAATTGTTTGAAGTGTGAGAAATTTTTAATTTTTTTCAGATGCATTTAATCGAGGTAGCTATTTCTATTACGTTCTGATTCTGTTCAATTCTCAGTTCCAGATGTTGAGTATGATCATAGGTTTTCAGAAGGCTTAACACATAGTCAGTGGAAGAATATTCCACTCGAACTAAGTCATGTTCAAATTGATCACCGTTAACTGGATAAACTGTTCGAATTGAAAAAAAATTGGGCATGTTTTCATTCATCTAGTGGATATTTAAGTTAGCTACAATTAATATATCATCAACCTCAGGTAGAAAGTATCTGGCTTTTATTGCTTACTG</gDNA_template>
            <first_frame> *  I  S  F  S  H  S  F  Q  I  Y  V  Y  I  R  S  K  F  L  E  D  L  M  N  L  P  V  P  E  M  K  K  P  D  G  N  P  A  K  Y  D  L  E  H  R  Y  K  G  D  D  S  W  Y  G  V  L  V  T  V  D  G  E  T  M  T  V  K  F  E  G  Y  P  E  K  F  D  V  K  F  L  A  D  D  L  K  S  K  E  E  M  D  E  F  V  R  R  F  R  N  V  S  P  Q  L  Q  D  N  E  C  S  S  V  K  E  G  M  I  V  C  A  A  C  N  A  F  G  K  D  D  M  L  F  Y  D  A  V  V  E  A  V  S  Y  E  L  F  E  V  *  E  I  F  N  F  F  Q  M  H  L  I  E  V  A  I  S  I  T  F  *  F  C  S  I  L  S  S  R  C  *  V  *  S  *  V  F  R  R  L  N  T  *  S  V  E  E  Y  S  T  R  T  K  S  C  S  N  *  S  P  L  T  G  *  T  V  R  I  E  K  K  L  G  M  F  S  F  I  *  W  I  F  K  L  A  T  I  N  I  S  S  T  S  G  R  K  Y  L  A  F  I  A  Y   </first_frame>
            <second_frame>  K  F  H  F  P  T  V  F  K  Y  T  Y  T  Y  G  R  S  F  *  K  I  *  *  I  Y  R  C  R  K  *  K  S  P  T  E  I  R  R  S  T  I  *  S  I  G  T  R  E  M  T  H  G  T  V  C  *  *  R  W  T  V  K  R  *  R  *  S  S  R  D  I  R  K  N  S  M  *  N  S  L  L  M  T  *  N  R  R  R  K  W  M  N  S  L  G  G  L  G  M  F  R  H  S  C  R  I  M  N  A  V  V  L  R  K  G  *  L  S  V  R  L  V  M  L  L  A  K  M  I  C  S  S  T  M  P  L  L  K  R  *  V  M  N  C  L  K  C  E  K  F  L  I  F  F  R  C  I  *  S  R  *  L  F  L  L  R  S  D  S  V  Q  F  S  V  P  D  V  E  Y  D  H  R  F  S  E  G  L  T  H  S  Q  W  K  N  I  P  L  E  L  S  H  V  Q  I  D  H  R  *  L  D  K  L  F  E  L  K  K  N  W  A  C  F  H  S  S  S  G  Y  L  S  *  L  Q  L  I  Y  H  Q  P  Q  V  E  S  I  W  L  L  L  L  T  </second_frame>
            <third_frame>   N  F  I  F  P  Q  F  S  N  I  R  I  H  T  V  E  V  S  R  R  F  D  E  F  T  G  A  G  N  E  K  A  R  R  K  S  G  E  V  R  F  R  A  S  V  Q  G  R  *  L  M  V  R  C  A  S  D  G  G  R  *  N  D  D  G  E  V  R  G  I  S  G  K  I  R  C  E  I  P  C  *  *  L  E  I  E  G  G  N  G  *  I  R  *  E  V  *  E  C  F  A  T  A  A  G  *  *  M  Q  *  C  *  G  R  D  D  C  L  C  G  L  *  C  F  W  Q  R  *  Y  A  L  L  R  C  R  C  *  S  G  K  L  *  I  V  *  S  V  R  N  F  *  F  F  S  D  A  F  N  R  G  S  Y  F  Y  Y  V  L  I  L  F  N  S  Q  F  Q  M  L  S  M  I  I  G  F  Q  K  A  *  H  I  V  S  G  R  I  F  H  S  N  *  V  M  F  K  L  I  T  V  N  W  I  N  C  S  N  *  K  K  I  G  H  V  F  I  H  L  V  D  I  *  V  S  Y  N  *  Y  I  I  N  L  R  *  K  V  S  G  F  Y  C  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77163" stop="76723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFSHSFQIYVYIRSKFLEDLMNLPVPEMKKPDGNPAKYDLEHRYKGDDSWYGVLVTVDGETMTVKFEGYPEKFDVKFLADDLKSKEEMDEFVRRFRNVSPQLQDNECSSVKEGMIVCAACNAFGKDDMLFYDAVVEAVSYELFEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76998" e_stop="76750"/>
            <exon e_start="73471" e_stop="73310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.944"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="76998" e_stop="76750" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="76749" i_stop="73472" i_length="3278"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="73471" e_stop="73310" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76998" stop="76750"/>
              <exon start="73471" stop="73310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGACGGTGGACGGTGAAACGATGACGGTGAAGTTCGAGGGATATCCGGAAAAATTCGATGTGAAATTCCTTGCTGATGACTTGAAATCGAAGGAGGAAATGGATGAATTCGTTAGGAGGTTTAGGAATGTTTCGCCACAGCTGCAGGATAATGAATGCAGTAGTGTTAAGGAAGGGATGATTGTCTGTGCGGCTTGTAATGCTTTTGGCAAAGATGATATGCTCTTCTACGATGCCGTTGTTGAAGCG : ATACACAAAAAGAACCATACATTTCACAATGGAGTGGAGGAGTGCACATGTACCTTTGTACTATCCTGGCTTCATGGCCCAAAGAAGGATGACTTGGCTAATTCTGGAATTGAAGGCATATGTATCATAAAAGGCACAACCCAAGTTGATCCTAGAATATCC</gDNA_template>
            <first_frame> V  T  V  D  G  E  T  M  T  V  K  F  E  G  Y  P  E  K  F  D  V  K  F  L  A  D  D  L  K  S  K  E  E  M  D  E  F  V  R  R  F  R  N  V  S  P  Q  L  Q  D  N  E  C  S  S  V  K  E  G  M  I  V  C  A  A  C  N  A  F  G  K  D  D  M  L  F  Y  D  A  V  V  E  A  :  I  H  K  K  N  H  T  F  H  N  G  V  E  E  C  T  C  T  F  V  L  S  W  L  H  G  P  K  K  D  D  L  A  N  S  G  I  E  G  I  C  I  I  K  G  T  T  Q  V  D  P  R  I  S </first_frame>
            <second_frame>  *  R  W  T  V  K  R  *  R  *  S  S  R  D  I  R  K  N  S  M  *  N  S  L  L  M  T  *  N  R  R  R  K  W  M  N  S  L  G  G  L  G  M  F  R  H  S  C  R  I  M  N  A  V  V  L  R  K  G  *  L  S  V  R  L  V  M  L  L  A  K  M  I  C  S  S  T  M  P  L  L  K  R :   Y  T  K  R  T  I  H  F  T  M  E  W  R  S  A  H  V  P  L  Y  Y  P  G  F  M  A  Q  R  R  M  T  W  L  I  L  E  L  K  A  Y  V  S  *  K  A  Q  P  K  L  I  L  E  Y   </second_frame>
            <third_frame>   D  G  G  R  *  N  D  D  G  E  V  R  G  I  S  G  K  I  R  C  E  I  P  C  *  *  L  E  I  E  G  G  N  G  *  I  R  *  E  V  *  E  C  F  A  T  A  A  G  *  *  M  Q  *  C  *  G  R  D  D  C  L  C  G  L  *  C  F  W  Q  R  *  Y  A  L  L  R  C  R  C  *  S   : D  T  Q  K  E  P  Y  I  S  Q  W  S  G  G  V  H  M  Y  L  C  T  I  L  A  S  W  P  K  E  G  *  L  G  *  F  W  N  *  R  H  M  Y  H  K  R  H  N  P  S  *  S  *  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76998" stop="76750"/>
                    <exon start="73471" stop="73310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTVDGETMTVKFEGYPEKFDVKFLADDLKSKEEMDEFVRRFRNVSPQLQDNECSSVKEGMIVCAACNAFGKDDMLFYDAVVEAIHKKNHTFHNGVEECTCTFVLSWLHGPKKDDLANSGIEGICIIKGTTQVDPRIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78000" PGL_stop="77197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78000" e_stop="77572"/>
            <exon e_start="77220" e_stop="77197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78000" e_stop="77572" e_length="429"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77571" i_stop="77221" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="77220" e_stop="77197" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78000" stop="77572"/>
              <exon start="77220" stop="77197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAATTACTTCGTGTTCCTTGTTTTCTCAACGAGACATCAGTACAAGACACAACATCTTAGTACTACTCTTGAAGACTCGGAAGAAGAGCTCAAGAATTGGAACGATACGAGCATTGACAACACACAAAAGAATCCTAATGATGCAGAGAAGGAACAAGTTTAAATGCTCTTTCCACGTACAGATCAACAATGTCTAAGATTTCGAAGTGCCTCATTCTTTTCTAGAGTACTTTGAATTATAATTTCGTATTCGATTTCACAGTAACATTTGTGTAGTATTTCTCTCTAGACATAAGGTTTGTGTTTTGAGGTAAAAGAATGAGAGCTATAAGGACATTGAAGAGTAGATATATTGTCATTTGCATAAGCACAAATGTGTATTTTTTTGACATAGTGCAAGAAAAGTTGTGGTTTTTTTTGAAGAAAA : AAAAAGCAAATAAATATAAATAAA</gDNA_template>
            <first_frame> L  N  Y  F  V  F  L  V  F  S  T  R  H  Q  Y  K  T  Q  H  L  S  T  T  L  E  D  S  E  E  E  L  K  N  W  N  D  T  S  I  D  N  T  Q  K  N  P  N  D  A  E  K  E  Q  V  *  M  L  F  P  R  T  D  Q  Q  C  L  R  F  R  S  A  S  F  F  S  R  V  L  *  I  I  I  S  Y  S  I  S  Q  *  H  L  C  S  I  S  L  *  T  *  G  L  C  F  E  V  K  E  *  E  L  *  G  H  *  R  V  D  I  L  S  F  A  *  A  Q  M  C  I  F  L  T  *  C  K  K  S  C  G  F  F  *  R  K  :  K  K  Q  I  N  I  N  K </first_frame>
            <second_frame>  S  I  T  S  C  S  L  F  S  Q  R  D  I  S  T  R  H  N  I  L  V  L  L  L  K  T  R  K  K  S  S  R  I  G  T  I  R  A  L  T  T  H  K  R  I  L  M  M  Q  R  R  N  K  F  K  C  S  F  H  V  Q  I  N  N  V  *  D  F  E  V  P  H  S  F  L  E  Y  F  E  L  *  F  R  I  R  F  H  S  N  I  C  V  V  F  L  S  R  H  K  V  C  V  L  R  *  K  N  E  S  Y  K  D  I  E  E  *  I  Y  C  H  L  H  K  H  K  C  V  F  F  *  H  S  A  R  K  V  V  V  F  F  E  E  K :   K  S  K  *  I  *  I   </second_frame>
            <third_frame>   Q  L  L  R  V  P  C  F  L  N  E  T  S  V  Q  D  T  T  S  *  Y  Y  S  *  R  L  G  R  R  A  Q  E  L  E  R  Y  E  H  *  Q  H  T  K  E  S  *  *  C  R  E  G  T  S  L  N  A  L  S  T  Y  R  S  T  M  S  K  I  S  K  C  L  I  L  F  *  S  T  L  N  Y  N  F  V  F  D  F  T  V  T  F  V  *  Y  F  S  L  D  I  R  F  V  F  *  G  K  R  M  R  A  I  R  T  L  K  S  R  Y  I  V  I  C  I  S  T  N  V  Y  F  F  D  I  V  Q  E  K  L  W  F  F  L  K  K   : K  K  A  N  K  Y  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77999" stop="77802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITSCSLFSQRDISTRHNILVLLLKTRKKSSRIGTIRALTTHKRILMMQRRNKFKCSFHVQINNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="91141" PGL_stop="92273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91141" e_stop="92273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="91141" e_stop="92273" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91141" stop="92273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGTTGGCCATGAAAATGAATTCGAGATGATGCAAGATCAACTTACTAGAGGTGCCAGTGATCTTGAAGTTGTCTCAATTGTTGGAATGGGTGGCATAGGTAAGACAACTTTGGCTAACAAAATTTACACTGACCCGTTCGTTATGTCTTGTTTTGATAAACGTGCAAAAGTCACCATCTCACAAGATTATTGTGTGAGAAATGTACTCCTACGTCTTCTTTCTTCCATAAGTGGAAAGACTCATCAAACTTATGAGGAGCAAGATGATGGGCAACTAGCAGACCAGTTGCAAAAGCTTCTAAAAGGCCCGAGGTACTTGGTAGTCATTGATGACATTTGGACTACTGGAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGTAATTGTAGAAGTCGAATACTCATGACTACTCGGAATATGGAGGTGGCTGAATATGCTAGCTCAGGTAGTCCTCCTTATCAAATGCGCCTCATGAATTTTGATGAAAGTTGGAGTTTATTGTATGAAAAGGTCTTTGCGAGAGGATTTTTCCCTCATGAATTTGAACAACTTGGGAAACAAATTGCATCAAAATGCAAAGGGTTACCTCTAATGATTGTTGTTATAGCTGGACTTCTTTCCAAAATTGGTAACAGATTGGATCGATGGAGAAGTGTTGCTGAGAATGTAAGTTCAGTGATGAACACAGATCTTGATGTCCAATGCATGAGAGTATTGGCTTTGAGTTACTATCACTTGCCTCATCACCTAAGAGCGTGCTTTCTGTATTTTGCACTCTTCCCAGAGGATAAATTGATTTTTGTGAATGAACTTGTGAAATTATGGGCAGCAGAAGGTTTTCTGAAGGTAGACGAGACGAAAAGCATGGAACAAGTGGCTAAACAAAGTCTAAAAGATCTTGTAGATAGAAGTTTAGTTTTCATCCAAAGGGTGAGTAGTTTTGATGGAAAAATAAAAGCTTGTGGAATGCATGATGTGATCCGTGAACTCTGCTTGAGAGAAGCTCGAAAAATAAACTTTGTGAATGTTATAATGGACAATCAAAATCCAAGTGAACAAGCCAAACATTTTTCAACAACGAGAGTTCGGATCAGTATCCAATCAAAGCAATCGAAAACTGTTGTCA</gDNA_template>
            <first_frame> D  G  W  P  *  K  *  I  R  D  D  A  R  S  T  Y  *  R  C  Q  *  S  *  S  C  L  N  C  W  N  G  W  H  R  *  D  N  F  G  *  Q  N  L  H  *  P  V  R  Y  V  L  F  *  *  T  C  K  S  H  H  L  T  R  L  L  C  E  K  C  T  P  T  S  S  F  F  H  K  W  K  D  S  S  N  L  *  G  A  R  *  W  A  T  S  R  P  V  A  K  A  S  K  R  P  E  V  L  G  S  H  *  *  H  L  D  Y  W  S  L  G  *  Y  K  T  M  F  P  R  L  *  L  *  K  S  N  T  H  D  Y  S  E  Y  G  G  G  *  I  C  *  L  R  *  S  S  L  S  N  A  P  H  E  F  *  *  K  L  E  F  I  V  *  K  G  L  C  E  R  I  F  P  S  *  I  *  T  T  W  E  T  N  C  I  K  M  Q  R  V  T  S  N  D  C  C  Y  S  W  T  S  F  Q  N  W  *  Q  I  G  S  M  E  K  C  C  *  E  C  K  F  S  D  E  H  R  S  *  C  P  M  H  E  S  I  G  F  E  L  L  S  L  A  S  S  P  K  S  V  L  S  V  F  C  T  L  P  R  G  *  I  D  F  C  E  *  T  C  E  I  M  G  S  R  R  F  S  E  G  R  R  D  E  K  H  G  T  S  G  *  T  K  S  K  R  S  C  R  *  K  F  S  F  H  P  K  G  E  *  F  *  W  K  N  K  S  L  W  N  A  *  C  D  P  *  T  L  L  E  R  S  S  K  N  K  L  C  E  C  Y  N  G  Q  S  K  S  K  *  T  S  Q  T  F  F  N  N  E  S  S  D  Q  Y  P  I  K  A  I  E  N  C  C   </first_frame>
            <second_frame>  M  V  G  H  E  N  E  F  E  M  M  Q  D  Q  L  T  R  G  A  S  D  L  E  V  V  S  I  V  G  M  G  G  I  G  K  T  T  L  A  N  K  I  Y  T  D  P  F  V  M  S  C  F  D  K  R  A  K  V  T  I  S  Q  D  Y  C  V  R  N  V  L  L  R  L  L  S  S  I  S  G  K  T  H  Q  T  Y  E  E  Q  D  D  G  Q  L  A  D  Q  L  Q  K  L  L  K  G  P  R  Y  L  V  V  I  D  D  I  W  T  T  G  A  W  D  D  I  K  L  C  F  P  D  C  N  C  R  S  R  I  L  M  T  T  R  N  M  E  V  A  E  Y  A  S  S  G  S  P  P  Y  Q  M  R  L  M  N  F  D  E  S  W  S  L  L  Y  E  K  V  F  A  R  G  F  F  P  H  E  F  E  Q  L  G  K  Q  I  A  S  K  C  K  G  L  P  L  M  I  V  V  I  A  G  L  L  S  K  I  G  N  R  L  D  R  W  R  S  V  A  E  N  V  S  S  V  M  N  T  D  L  D  V  Q  C  M  R  V  L  A  L  S  Y  Y  H  L  P  H  H  L  R  A  C  F  L  Y  F  A  L  F  P  E  D  K  L  I  F  V  N  E  L  V  K  L  W  A  A  E  G  F  L  K  V  D  E  T  K  S  M  E  Q  V  A  K  Q  S  L  K  D  L  V  D  R  S  L  V  F  I  Q  R  V  S  S  F  D  G  K  I  K  A  C  G  M  H  D  V  I  R  E  L  C  L  R  E  A  R  K  I  N  F  V  N  V  I  M  D  N  Q  N  P  S  E  Q  A  K  H  F  S  T  T  R  V  R  I  S  I  Q  S  K  Q  S  K  T  V  V  </second_frame>
            <third_frame>   W  L  A  M  K  M  N  S  R  *  C  K  I  N  L  L  E  V  P  V  I  L  K  L  S  Q  L  L  E  W  V  A  *  V  R  Q  L  W  L  T  K  F  T  L  T  R  S  L  C  L  V  L  I  N  V  Q  K  S  P  S  H  K  I  I  V  *  E  M  Y  S  Y  V  F  F  L  P  *  V  E  R  L  I  K  L  M  R  S  K  M  M  G  N  *  Q  T  S  C  K  S  F  *  K  A  R  G  T  W  *  S  L  M  T  F  G  L  L  E  L  G  M  I  *  N  Y  V  S  Q  T  V  I  V  E  V  E  Y  S  *  L  L  G  I  W  R  W  L  N  M  L  A  Q  V  V  L  L  I  K  C  A  S  *  I  L  M  K  V  G  V  Y  C  M  K  R  S  L  R  E  D  F  S  L  M  N  L  N  N  L  G  N  K  L  H  Q  N  A  K  G  Y  L  *  *  L  L  L  *  L  D  F  F  P  K  L  V  T  D  W  I  D  G  E  V  L  L  R  M  *  V  Q  *  *  T  Q  I  L  M  S  N  A  *  E  Y  W  L  *  V  T  I  T  C  L  I  T  *  E  R  A  F  C  I  L  H  S  S  Q  R  I  N  *  F  L  *  M  N  L  *  N  Y  G  Q  Q  K  V  F  *  R  *  T  R  R  K  A  W  N  K  W  L  N  K  V  *  K  I  L  *  I  E  V  *  F  S  S  K  G  *  V  V  L  M  E  K  *  K  L  V  E  C  M  M  *  S  V  N  S  A  *  E  K  L  E  K  *  T  L  *  M  L  *  W  T  I  K  I  Q  V  N  K  P  N  I  F  Q  Q  R  E  F  G  S  V  S  N  Q  S  N  R  K  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91142" stop="92272"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGHENEFEMMQDQLTRGASDLEVVSIVGMGGIGKTTLANKIYTDPFVMSCFDKRAKVTISQDYCVRNVLLRLLSSISGKTHQTYEEQDDGQLADQLQKLLKGPRYLVVIDDIWTTGAWDDIKLCFPDCNCRSRILMTTRNMEVAEYASSGSPPYQMRLMNFDESWSLLYEKVFARGFFPHEFEQLGKQIASKCKGLPLMIVVIAGLLSKIGNRLDRWRSVAENVSSVMNTDLDVQCMRVLALSYYHLPHHLRACFLYFALFPEDKLIFVNELVKLWAAEGFLKVDETKSMEQVAKQSLKDLVDRSLVFIQRVSSFDGKIKACGMHDVIRELCLREARKINFVNVIMDNQNPSEQAKHFSTTRVRISIQSKQSKTVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="92742" PGL_stop="93512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92742" e_stop="93512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="92742" e_stop="93512" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92742" stop="93512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTTTAGACTACTTCCCAATGTAAAGAAGTTGCAGATATATGGCATTCAAGAAGGCTACATAAGAAGTAACAAGGATGAGGTCTTCCATTCTCTTTGCTACTTAGATCAGCTTAAGGAATTGGACTTTAAGATGAAAAAGACAGCTATTGTAAGACCAATGTTTCCTACACGTTTGATTCTTCCTTCTATAGGTACATTTTTGAAGAACCTTAAGAAGTTAGCTTTTAGAGGTACTCGGTTGCATTGGAAGGATTTGGAGATTCTTGGTAAGTTGCCTAAACTCAAGGCCCTCAAACTAGGATATGATGCCTGCCTTGGTACTGATTGGGAAGTAGGTGAGGAAGGGTTTCCACACTTGAAGTTCTTGCGATTGAAGCAGTTGTACTTGCATAAATGGATAGCTAGTAGTGATCACTTTCCATGCCTTGAACGACTAGTCATTAACCGTTGTTGGAGCATGTATTCGATCCCACAGGACTTTGTAGACATAACCACTCTTCAGCTGATTCATGTAAGTGACTCTGCAAAATCTGTTGGGAACTCCGCCAAGATGATTCAGCAGGAAATTGAAGACAACTATGGAAGTTCTGTTGAGGTCTGTATCAGTTAGTCCTTTCAATTAAACCTATCTTTTTAGTTGATTTACTTAAGAAGGCCTTCATTCTCATTTTGTATTTTAGTACTTTTTTGTACTTCAAAGCTTATATGAGAAGTTAGTTCTGTTCAATCAATACAAACCAGTTGTTTACAATCACTATATGAGAAGT</gDNA_template>
            <first_frame> R  S  L  D  Y  F  P  M  *  R  S  C  R  Y  M  A  F  K  K  A  T  *  E  V  T  R  M  R  S  S  I  L  F  A  T  *  I  S  L  R  N  W  T  L  R  *  K  R  Q  L  L  *  D  Q  C  F  L  H  V  *  F  F  L  L  *  V  H  F  *  R  T  L  R  S  *  L  L  E  V  L  G  C  I  G  R  I  W  R  F  L  V  S  C  L  N  S  R  P  S  N  *  D  M  M  P  A  L  V  L  I  G  K  *  V  R  K  G  F  H  T  *  S  S  C  D  *  S  S  C  T  C  I  N  G  *  L  V  V  I  T  F  H  A  L  N  D  *  S  L  T  V  V  G  A  C  I  R  S  H  R  T  L  *  T  *  P  L  F  S  *  F  M  *  V  T  L  Q  N  L  L  G  T  P  P  R  *  F  S  R  K  L  K  T  T  M  E  V  L  L  R  S  V  S  V  S  P  F  N  *  T  Y  L  F  S  *  F  T  *  E  G  L  H  S  H  F  V  F  *  Y  F  F  V  L  Q  S  L  Y  E  K  L  V  L  F  N  Q  Y  K  P  V  V  Y  N  H  Y  M  R  S </first_frame>
            <second_frame>  D  L  *  T  T  S  Q  C  K  E  V  A  D  I  W  H  S  R  R  L  H  K  K  *  Q  G  *  G  L  P  F  S  L  L  L  R  S  A  *  G  I  G  L  *  D  E  K  D  S  Y  C  K  T  N  V  S  Y  T  F  D  S  S  F  Y  R  Y  I  F  E  E  P  *  E  V  S  F  *  R  Y  S  V  A  L  E  G  F  G  D  S  W  *  V  A  *  T  Q  G  P  Q  T  R  I  *  C  L  P  W  Y  *  L  G  S  R  *  G  R  V  S  T  L  E  V  L  A  I  E  A  V  V  L  A  *  M  D  S  *  *  *  S  L  S  M  P  *  T  T  S  H  *  P  L  L  E  H  V  F  D  P  T  G  L  C  R  H  N  H  S  S  A  D  S  C  K  *  L  C  K  I  C  W  E  L  R  Q  D  D  S  A  G  N  *  R  Q  L  W  K  F  C  *  G  L  Y  Q  L  V  L  S  I  K  P  I  F  L  V  D  L  L  K  K  A  F  I  L  I  L  Y  F  S  T  F  L  Y  F  K  A  Y  M  R  S  *  F  C  S  I  N  T  N  Q  L  F  T  I  T  I  *  E   </second_frame>
            <third_frame>   I  F  R  L  L  P  N  V  K  K  L  Q  I  Y  G  I  Q  E  G  Y  I  R  S  N  K  D  E  V  F  H  S  L  C  Y  L  D  Q  L  K  E  L  D  F  K  M  K  K  T  A  I  V  R  P  M  F  P  T  R  L  I  L  P  S  I  G  T  F  L  K  N  L  K  K  L  A  F  R  G  T  R  L  H  W  K  D  L  E  I  L  G  K  L  P  K  L  K  A  L  K  L  G  Y  D  A  C  L  G  T  D  W  E  V  G  E  E  G  F  P  H  L  K  F  L  R  L  K  Q  L  Y  L  H  K  W  I  A  S  S  D  H  F  P  C  L  E  R  L  V  I  N  R  C  W  S  M  Y  S  I  P  Q  D  F  V  D  I  T  T  L  Q  L  I  H  V  S  D  S  A  K  S  V  G  N  S  A  K  M  I  Q  Q  E  I  E  D  N  Y  G  S  S  V  E  V  C  I  S  *  S  F  Q  L  N  L  S  F  *  L  I  Y  L  R  R  P  S  F  S  F  C  I  L  V  L  F  C  T  S  K  L  I  *  E  V  S  S  V  Q  S  I  Q  T  S  C  L  Q  S  L  Y  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92744" stop="93355"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFRLLPNVKKLQIYGIQEGYIRSNKDEVFHSLCYLDQLKELDFKMKKTAIVRPMFPTRLILPSIGTFLKNLKKLAFRGTRLHWKDLEILGKLPKLKALKLGYDACLGTDWEVGEEGFPHLKFLRLKQLYLHKWIASSDHFPCLERLVINRCWSMYSIPQDFVDITTLQLIHVSDSAKSVGNSAKMIQQEIEDNYGSSVEVCIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="117736" PGL_stop="95007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117736" e_stop="117380"/>
            <exon e_start="114839" e_stop="114740"/>
            <exon e_start="113749" e_stop="113692"/>
            <exon e_start="113380" e_stop="113274"/>
            <exon e_start="112771" e_stop="112147"/>
            <exon e_start="107214" e_stop="107198"/>
            <exon e_start="106750" e_stop="106631"/>
            <exon e_start="104756" e_stop="104607"/>
            <exon e_start="104460" e_stop="104188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.990"/>
          <exon-intron don_prob="0.987" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.913" e_score="0.765"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="117736" e_stop="117380" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="117379" i_stop="114840" i_length="2540"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="114839" e_stop="114740" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="114739" i_stop="113750" i_length="990"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113749" e_stop="113692" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.940">
            <gDNA_intron_boundary i_start="113691" i_stop="113381" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113380" e_stop="113274" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113273" i_stop="112772" i_length="502"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112771" e_stop="112147" e_length="625"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112146" i_stop="107215" i_length="4932"/>
          </intron>
          <exon e_serial="6" e_score="0.765">
            <gDNA_exon_boundary e_start="107214" e_stop="107198" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.460" acc_prob="0.913">
            <gDNA_intron_boundary i_start="107197" i_stop="106751" i_length="447"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106750" e_stop="106631" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="106630" i_stop="104757" i_length="1874"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104756" e_stop="104607" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104606" i_stop="104461" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="104460" e_stop="104188" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117736" stop="117380"/>
              <exon start="114839" stop="114740"/>
              <exon start="113749" stop="113692"/>
              <exon start="113380" stop="113274"/>
              <exon start="112771" stop="112147"/>
              <exon start="107214" stop="107198"/>
              <exon start="106750" stop="106693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106741" stop="106631"/>
              <exon start="104756" stop="104607"/>
              <exon start="104460" stop="104188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106726" stop="106631"/>
              <exon start="104756" stop="104607"/>
              <exon start="104460" stop="104430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCTATTGCGATGCTTCACTCACAAACACACTGGACAAAATCCAGAAAAAGCCCAGTTTAAATCTTGAATTTTACTCATCTGGGTAGTTGTTGATTCTGTGATTTGATCAAATTATGAGGAAGAGGGAGAGGGAAAATCCATGTGGTGTTTGTGGGCATTATCACAAATATGAAGAAGGTGAAGTTTGTGGGATCTGTGGACATCGAATGCCTGATGTATCTGAAAAGGGTTCTTCAGTTCATGTCAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTTTCTAGGGAGTTATGATAATGCTTCTCGAGCTGAGCTTCTCAAAACCATCGGAATTTCTCGGATTCTCAAT : ATAGTACCTGCTTGTCAGAATCTTTATAAAAATTCCTTTACTTATCACTGCCTGCAAGATGAGCAAAATTTGGCTTTTGATGATGCTATCCAATTTCTAG : AACAATGTGAAAAGGATAGGGCTCGTGTTCTTGTGCACTGCATGTTAGGTAAAAACAG : GTCGGCAGCAATTGTAATTGCTTATTTGATGAAAAGTAAAGGGTGGAACCTTGCACAGAGCCTTCAGTGGACGAAAGAGCGAAGACCCTCTGTTGACCTAAATCAAG : AGGTCTACCAGCAGCTACAGGACTACGAGCAGAAGATCTTTATGTCACTTCAGAGCAAGCCCAGCCCCGTCATGCTAGCCTTCTCTTCTCCCATGACATCCTTCAACTTTGGCTTCCCAAAGACCGGTGATCATATTCCTGCTCCAGCCTTCAACAATACTAGTGCTCCTTCTGTTTTCTCCCCTCCTGCTTTTGAAGTTCCTCCACAGGGATTCACTTTTGGAGCTTCTCATAATCAACATGCTGGCTCTGAAACCCCTTTGAATGCTAATCCAAATCCAAATGGTAGCGACATTGCCATGGACTTGTGAAAAATCCTCAACTTCAACAAGTATTTCAAGGTTATGTGAGTCGCTGATGCCAATCTACCTCGTTTTTCAGAAGGTTGGATGTGAAGTGTGAGAAAGTACTTATAAATCAACTAGTTGTAGAGTTTGACATGCTCATATCTTAGGGTGCCATCAAAATGGATTTGTCCAGGAAATCCAAGTAATTATTGCCCAATATATATGAAATACTAAGGAATGTTTTCAGTTGATCTCTTAGAGAAAATGATCAATATGGTCCTTAATGTATTGAGGTTGTTTTATTTTGGTTCTTAATATATTTTAGGTGATTGAAAATA : CAAAATAAAAAAAACAA : AGAGAGAGAGAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAG : GACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAG : CTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGGGATCATGTTTTGCTTACTTCATATTGAACTTAATCGCTAATATTACTTTTTGAAAGTCATTATGTTCTTCATTTTTAATTTTCTGAAGATGACA</gDNA_template>
            <first_frame> K  F  Y  C  D  A  S  L  T  N  T  L  D  K  I  Q  K  K  P  S  L  N  L  E  F  Y  S  S  G  *  L  L  I  L  *  F  D  Q  I  M  R  K  R  E  R  E  N  P  C  G  V  C  G  H  Y  H  K  Y  E  E  G  E  V  C  G  I  C  G  H  R  M  P  D  V  S  E  K  G  S  S  V  H  V  S  A  F  P  S  E  I  L  P  E  F  L  F  L  G  S  Y  D  N  A  S  R  A  E  L  L  K  T  I  G  I  S  R  I  L  N  :  I  V  P  A  C  Q  N  L  Y  K  N  S  F  T  Y  H  C  L  Q  D  E  Q  N  L  A  F  D  D  A  I  Q  F  L   : E  Q  C  E  K  D  R  A  R  V  L  V  H  C  M  L  G  K  N  R :   S  A  A  I  V  I  A  Y  L  M  K  S  K  G  W  N  L  A  Q  S  L  Q  W  T  K  E  R  R  P  S  V  D  L  N  Q   : E  V  Y  Q  Q  L  Q  D  Y  E  Q  K  I  F  M  S  L  Q  S  K  P  S  P  V  M  L  A  F  S  S  P  M  T  S  F  N  F  G  F  P  K  T  G  D  H  I  P  A  P  A  F  N  N  T  S  A  P  S  V  F  S  P  P  A  F  E  V  P  P  Q  G  F  T  F  G  A  S  H  N  Q  H  A  G  S  E  T  P  L  N  A  N  P  N  P  N  G  S  D  I  A  M  D  L  *  K  I  L  N  F  N  K  Y  F  K  V  M  *  V  A  D  A  N  L  P  R  F  S  E  G  W  M  *  S  V  R  K  Y  L  *  I  N  *  L  *  S  L  T  C  S  Y  L  R  V  P  S  K  W  I  C  P  G  N  P  S  N  Y  C  P  I  Y  M  K  Y  *  G  M  F  S  V  D  L  L  E  K  M  I  N  M  V  L  N  V  L  R  L  F  Y  F  G  S  *  Y  I  L  G  D  *  K  Y :   K  I  K  K  T   : K  R  E  R  R  R  R  K  K  E  G  K  N  V  G  S  S  R  R  G  G  R  Q  E  A  R  R  R  S  V  W  S  H  Q  S  Q  S  Q  K  P   : G  R  E  *  S  L  L  *  D  *  K  K  H  S  A  E  E  I  D  E  C  L  L  *  P  T  V  C  G  F  *  F  N  C  L  L  V  *  W  P  S  S  *  S  R  T  D  S  R  *   : A  G  D  G  R  W  *  *  N  *  C  D  V  A  S  N  R  R  H  N  Y  L  S  L  L  F  F  C  F  C  G  C  K  T  L  C  F  K  M  V  L  N  L  V  K  C  W  L  C  A  A  L  G  P  L  D  S  D  E  W  D  H  V  L  L  T  S  Y  *  T  *  S  L  I  L  L  F  E  S  H  Y  V  L  H  F  *  F  S  E  D  D  </first_frame>
            <second_frame>  N  S  I  A  M  L  H  S  Q  T  H  W  T  K  S  R  K  S  P  V  *  I  L  N  F  T  H  L  G  S  C  *  F  C  D  L  I  K  L  *  G  R  G  R  G  K  I  H  V  V  F  V  G  I  I  T  N  M  K  K  V  K  F  V  G  S  V  D  I  E  C  L  M  Y  L  K  R  V  L  Q  F  M  S  V  R  F  L  L  R  S  C  R  S  F  F  F  *  G  V  M  I  M  L  L  E  L  S  F  S  K  P  S  E  F  L  G  F  S  I :   *  Y  L  L  V  R  I  F  I  K  I  P  L  L  I  T  A  C  K  M  S  K  I  W  L  L  M  M  L  S  N  F  *  :  N  N  V  K  R  I  G  L  V  F  L  C  T  A  C  *  V  K  T   : G  R  Q  Q  L  *  L  L  I  *  *  K  V  K  G  G  T  L  H  R  A  F  S  G  R  K  S  E  D  P  L  L  T  *  I  K  :  R  S  T  S  S  Y  R  T  T  S  R  R  S  L  C  H  F  R  A  S  P  A  P  S  C  *  P  S  L  L  P  *  H  P  S  T  L  A  S  Q  R  P  V  I  I  F  L  L  Q  P  S  T  I  L  V  L  L  L  F  S  P  L  L  L  L  K  F  L  H  R  D  S  L  L  E  L  L  I  I  N  M  L  A  L  K  P  L  *  M  L  I  Q  I  Q  M  V  A  T  L  P  W  T  C  E  K  S  S  T  S  T  S  I  S  R  L  C  E  S  L  M  P  I  Y  L  V  F  Q  K  V  G  C  E  V  *  E  S  T  Y  K  S  T  S  C  R  V  *  H  A  H  I  L  G  C  H  Q  N  G  F  V  Q  E  I  Q  V  I  I  A  Q  Y  I  *  N  T  K  E  C  F  Q  L  I  S  *  R  K  *  S  I  W  S  L  M  Y  *  G  C  F  I  L  V  L  N  I  F  *  V  I  E  N   : T  K  *  K  K  Q  :  R  E  R  E  E  E  E  K  K  R  E  K  M  S  G  V  A  G  G  E  E  D  K  K  P  A  G  D  Q  S  G  H  I  N  L  K  V  K  S  Q  :  D  G  N  E  V  F  F  R  I  K  R  S  T  Q  L  K  K  L  M  N  A  Y  C  D  R  Q  S  V  D  F  N  S  I  A  F  L  F  D  G  R  R  L  R  A  E  Q  T  P  D  E  :  L  E  M  E  D  G  D  E  I  D  A  M  L  H  Q  T  G  G  T  T  I  *  V  S  F  S  F  V  S  V  D  A  R  L  C  V  S  R  W  Y  *  T  *  *  N  A  G  C  V  Q  L  *  D  L  *  T  L  M  N  G  I  M  F  C  L  L  H  I  E  L  N  R  *  Y  Y  F  L  K  V  I  M  F  F  I  F  N  F  L  K  M  T </second_frame>
            <third_frame>   I  L  L  R  C  F  T  H  K  H  T  G  Q  N  P  E  K  A  Q  F  K  S  *  I  L  L  I  W  V  V  V  D  S  V  I  *  S  N  Y  E  E  E  G  E  G  K  S  M  W  C  L  W  A  L  S  Q  I  *  R  R  *  S  L  W  D  L  W  T  S  N  A  *  C  I  *  K  G  F  F  S  S  C  Q  C  V  S  F  *  D  L  A  G  V  S  F  S  R  E  L  *  *  C  F  S  S  *  A  S  Q  N  H  R  N  F  S  D  S  Q   : Y  S  T  C  L  S  E  S  L  *  K  F  L  Y  L  S  L  P  A  R  *  A  K  F  G  F  *  *  C  Y  P  I  S  R :   T  M  *  K  G  *  G  S  C  S  C  A  L  H  V  R  *  K  Q  :  V  G  S  N  C  N  C  L  F  D  E  K  *  R  V  E  P  C  T  E  P  S  V  D  E  R  A  K  T  L  C  *  P  K  S  R :   G  L  P  A  A  T  G  L  R  A  E  D  L  Y  V  T  S  E  Q  A  Q  P  R  H  A  S  L  L  F  S  H  D  I  L  Q  L  W  L  P  K  D  R  *  S  Y  S  C  S  S  L  Q  Q  Y  *  C  S  F  C  F  L  P  S  C  F  *  S  S  S  T  G  I  H  F  W  S  F  S  *  S  T  C  W  L  *  N  P  F  E  C  *  S  K  S  K  W  *  R  H  C  H  G  L  V  K  N  P  Q  L  Q  Q  V  F  Q  G  Y  V  S  R  *  C  Q  S  T  S  F  F  R  R  L  D  V  K  C  E  K  V  L  I  N  Q  L  V  V  E  F  D  M  L  I  S  *  G  A  I  K  M  D  L  S  R  K  S  K  *  L  L  P  N  I  Y  E  I  L  R  N  V  F  S  *  S  L  R  E  N  D  Q  Y  G  P  *  C  I  E  V  V  L  F  W  F  L  I  Y  F  R  *  L  K  I  :  Q  N  K  K  N  K :   E  R  E  K  K  K  K  K  R  G  K  K  C  R  E  *  Q  E  G  R  K  T  R  S  P  P  A  I  S  L  V  T  S  I  S  K  S  K  A  R :   T  G  M  K  S  S  L  G  L  K  E  A  L  S  *  R  N  *  *  M  L  I  V  T  D  S  L  W  I  L  I  Q  L  P  S  C  L  M  A  V  V  L  E  Q  N  R  L  Q  M  S :   W  R  W  K  M  V  M  K  L  M  R  C  C  I  K  P  E  A  Q  L  F  E  S  P  F  L  L  F  L  W  M  Q  D  F  V  F  Q  D  G  I  E  L  S  E  M  L  V  V  C  S  F  R  T  F  R  L  *  *  M  G  S  C  F  A  Y  F  I  L  N  L  I  A  N  I  T  F  *  K  S  L  C  S  S  F  L  I  F  *  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117631" stop="117380"/>
                    <exon start="114839" stop="114740"/>
                    <exon start="113749" stop="113692"/>
                    <exon start="113380" stop="113274"/>
                    <exon start="112771" stop="112461"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDQIMRKRERENPCGVCGHYHKYEEGEVCGICGHRMPDVSEKGSSVHVSAFPSEILPEFLFLGSYDNASRAELLKTIGISRILNIVPACQNLYKNSFTYHCLQDEQNLAFDDAIQFLEQCEKDRARVLVHCMLGKNRSAAIVIAYLMKSKGWNLAQSLQWTKERRPSVDLNQEVYQQLQDYEQKIFMSLQSKPSPVMLAFSSPMTSFNFGFPKTGDHIPAPAFNNTSAPSVFSPPAFEVPPQGFTFGASHNQHAGSETPLNANPNPNGSDIAMDL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107206" stop="107198"/>
                    <exon start="106750" stop="106631"/>
                    <exon start="104756" stop="104607"/>
                    <exon start="104460" stop="104395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQREREEEEKKREKMSGVAGGEEDKKPAGDQSGHINLKVKSQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGTTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106780" e_stop="106631"/>
            <exon e_start="104756" e_stop="104607"/>
            <exon e_start="104460" e_stop="104243"/>
            <exon e_start="99066" e_stop="99049"/>
            <exon e_start="96754" e_stop="96726"/>
            <exon e_start="96256" e_stop="96240"/>
            <exon e_start="95273" e_stop="95216"/>
            <exon e_start="95162" e_stop="95142"/>
            <exon e_start="95038" e_stop="95007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="0.993"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.793"/>
          <exon-intron don_prob="0.325" acc_prob="0.977" e_score="0.647"/>
          <exon-intron don_prob="0.817" acc_prob="0.710" e_score="0.500"/>
          <exon-intron don_prob="0.000" acc_prob="0.401" e_score="0.381"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="106780" e_stop="106631" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="106630" i_stop="104757" i_length="1874"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104756" e_stop="104607" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104606" i_stop="104461" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104460" e_stop="104243" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104242" i_stop="99067" i_length="5176"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="99066" e_stop="99049" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99048" i_stop="96755" i_length="2294"/>
          </intron>
          <exon e_serial="5" e_score="0.793">
            <gDNA_exon_boundary e_start="96754" e_stop="96726" e_length="29"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96725" i_stop="96257" i_length="469"/>
          </intron>
          <exon e_serial="6" e_score="0.647">
            <gDNA_exon_boundary e_start="96256" e_stop="96240" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.325" acc_prob="0.977">
            <gDNA_intron_boundary i_start="96239" i_stop="95274" i_length="966"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="95273" e_stop="95216" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.817" acc_prob="0.710">
            <gDNA_intron_boundary i_start="95215" i_stop="95163" i_length="53"/>
          </intron>
          <exon e_serial="8" e_score="0.381">
            <gDNA_exon_boundary e_start="95162" e_stop="95142" e_length="21"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.401">
            <gDNA_intron_boundary i_start="95141" i_stop="95039" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="0.562">
            <gDNA_exon_boundary e_start="95038" e_stop="95007" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106780" stop="106631"/>
              <exon start="104756" stop="104607"/>
              <exon start="104460" stop="104243"/>
              <exon start="99066" stop="99049"/>
              <exon start="96754" stop="96726"/>
              <exon start="96256" stop="96240"/>
              <exon start="95273" stop="95216"/>
              <exon start="95162" stop="95142"/>
              <exon start="95038" stop="95007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106726" stop="106631"/>
              <exon start="104756" stop="104607"/>
              <exon start="104460" stop="104430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACATTAATTTCATTATTCTCCATTAACAGAGAGAGAGAGAAGAAGAAGAAAAAAAGAGGGAAAAAATGTCGGGAGTAGCAGGAGGGGAGGAAGACAAGAAGCCCGCCGGCGATCAGTCTGGTCACATCAATCTCAAAGTCAAAAGCCAG : GACGGGAATGAAGTCTTCTTTAGGATTAAAAGAAGCACTCAGCTGAAGAAATTGATGAATGCTTATTGTGACCGACAGTCTGTGGATTTTAATTCAATTGCCTTCTTGTTTGATGGCCGTCGTCTTAGAGCAGAACAGACTCCAGATGAG : CTGGAGATGGAAGATGGTGATGAAATTGATGCGATGTTGCATCAAACCGGAGGCACAACTATTTGAGTCTCCTTTTCTTTTGTTTCTGTGGATGCAAGACTTTGTGTTTCAAGATGGTATTGAACTTAGTGAAATGCTGGTTGTGTGCAGCTTTAGGACCTTTAGACTCTGATGAATGGGATCATGTTTTGCTTACTTCATATTGAACTTAATCGCTA : AAAAAAAAAAAGAAAAAA : AAAAAAAACCCAAAAAGTTAAAAATAAAG : AAAAACCAGCCCAATAT : CAAAGGCTGAAAAATGATCAATGACAATGACCGTTTTGAGAACGGACCAAACAACTTT : ATTGTCATTATTATGTTCGCG : ATAAAGTAGCCAGACATAAAGGATGAAATGTA</gDNA_template>
            <first_frame> Y  I  N  F  I  I  L  H  *  Q  R  E  R  E  E  E  E  K  K  R  E  K  M  S  G  V  A  G  G  E  E  D  K  K  P  A  G  D  Q  S  G  H  I  N  L  K  V  K  S  Q  :  D  G  N  E  V  F  F  R  I  K  R  S  T  Q  L  K  K  L  M  N  A  Y  C  D  R  Q  S  V  D  F  N  S  I  A  F  L  F  D  G  R  R  L  R  A  E  Q  T  P  D  E  :  L  E  M  E  D  G  D  E  I  D  A  M  L  H  Q  T  G  G  T  T  I  *  V  S  F  S  F  V  S  V  D  A  R  L  C  V  S  R  W  Y  *  T  *  *  N  A  G  C  V  Q  L  *  D  L  *  T  L  M  N  G  I  M  F  C  L  L  H  I  E  L  N  R  * :   K  K  K  R  K  K :   K  K  T  Q  K  V  K  N  K   : E  K  P  A  Q  Y  :  Q  R  L  K  N  D  Q  *  Q  *  P  F  *  E  R  T  K  Q  L   : Y  C  H  Y  Y  V  R   : D  K  V  A  R  H  K  G  *  N  V </first_frame>
            <second_frame>  T  L  I  S  L  F  S  I  N  R  E  R  E  K  K  K  K  K  R  G  K  K  C  R  E  *  Q  E  G  R  K  T  R  S  P  P  A  I  S  L  V  T  S  I  S  K  S  K  A  R :   T  G  M  K  S  S  L  G  L  K  E  A  L  S  *  R  N  *  *  M  L  I  V  T  D  S  L  W  I  L  I  Q  L  P  S  C  L  M  A  V  V  L  E  Q  N  R  L  Q  M  S :   W  R  W  K  M  V  M  K  L  M  R  C  C  I  K  P  E  A  Q  L  F  E  S  P  F  L  L  F  L  W  M  Q  D  F  V  F  Q  D  G  I  E  L  S  E  M  L  V  V  C  S  F  R  T  F  R  L  *  *  M  G  S  C  F  A  Y  F  I  L  N  L  I  A   : K  K  K  K  E  K   : K  K  K  P  K  K  L  K  I  K  :  K  N  Q  P  N  I :   K  G  *  K  M  I  N  D  N  D  R  F  E  N  G  P  N  N  F  :  I  V  I  I  M  F  A  :  I  K  *  P  D  I  K  D  E  M   </second_frame>
            <third_frame>   H  *  F  H  Y  S  P  L  T  E  R  E  R  R  R  R  K  K  E  G  K  N  V  G  S  S  R  R  G  G  R  Q  E  A  R  R  R  S  V  W  S  H  Q  S  Q  S  Q  K  P   : G  R  E  *  S  L  L  *  D  *  K  K  H  S  A  E  E  I  D  E  C  L  L  *  P  T  V  C  G  F  *  F  N  C  L  L  V  *  W  P  S  S  *  S  R  T  D  S  R  *   : A  G  D  G  R  W  *  *  N  *  C  D  V  A  S  N  R  R  H  N  Y  L  S  L  L  F  F  C  F  C  G  C  K  T  L  C  F  K  M  V  L  N  L  V  K  C  W  L  C  A  A  L  G  P  L  D  S  D  E  W  D  H  V  L  L  T  S  Y  *  T  *  S  L  :  K  K  K  K  K  K  :  K  K  N  P  K  S  *  K  *  R :   K  T  S  P  I   : S  K  A  E  K  *  S  M  T  M  T  V  L  R  T  D  Q  T  T  L :   L  S  L  L  C  S  R :   *  S  S  Q  T  *  R  M  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106753" stop="106631"/>
                    <exon start="104756" stop="104607"/>
                    <exon start="104460" stop="104395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREREEEEKKREKMSGVAGGEEDKKPAGDQSGHINLKVKSQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGTTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104698" stop="104607"/>
                    <exon start="104460" stop="104289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLIVTDSLWILIQLPSCLMAVVLEQNRLQMSWRWKMVMKLMRCCIKPEAQLFESPFLLFLWMQDFVFQDGIELSEMLVVCSFRTFRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110340" e_stop="109516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="110340" e_stop="109516" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110340" stop="109516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATCTCAAACGCTTTATTTTTATTTGTCTAACCCTTTTAATCGAAATTTTAGATTTGTCGCTGACTCGCGTATGGATGTGAGTGGCTAATACCTTAGTGTTGGTCACGTTTGTATATTGTAATTTTTTTTTAAAAAAAAATTGTTAGGTTGAGAGGAATACAAGGAGTCCCTCTCATTCTTCACAGCACAAATTGAACTCCAATAACAAAAATTTAATTCAGAGAAAAAAAAAAGAAAAAATTTTCCAACTAATTTTTTCAACTAACTTTTTTCTCTCTTTCACTCTTCAACCAAAAACTTCTCATCAATATTGAATCCAAAAAAATTACATTTTTACAATTTCTTTTTCAAGATTTCAACAAGTTATAACAATCCTAGTGCCTCCAAATCTTGTGTTTTGTTCTGTTTGTTGATCATAATCGCGTATTTTTTTTAAAGTCGCGAATGTGATCATTTCGGTGTTTGAATCAAGAAAACCGTACGTTGAATCGATAAAAAGAGAAGGTAAATAATGCCAAGCAAGTTGAAGAAGGCAATTGGTGCAGTAAAAGATCAAACAAGCATTAGCCTTGCAAAAGTTTCAAGCAATACTTCATCAACTCTTGAAGTTGCTGTCTTAAAAGCTACAACACATGATGATGTACCTATCGATGATCGATACGTTCAAGAAGTCATCAAACTTGTGTCATCTAACAAGGCCTACGCGGCTGCCTGTGCTCGTGCCATTGGCAAACGCATAGGTAGAACGAGGAATTGGATCGTTGCCCTCAAATCATTGATGCTTGTCTTAAGAATCTTCCAAGATGGTGATCCTTACTTCC</gDNA_template>
            <first_frame> S  N  L  K  R  F  I  F  I  C  L  T  L  L  I  E  I  L  D  L  S  L  T  R  V  W  M  *  V  A  N  T  L  V  L  V  T  F  V  Y  C  N  F  F  L  K  K  N  C  *  V  E  R  N  T  R  S  P  S  H  S  S  Q  H  K  L  N  S  N  N  K  N  L  I  Q  R  K  K  K  E  K  I  F  Q  L  I  F  S  T  N  F  F  L  S  F  T  L  Q  P  K  T  S  H  Q  Y  *  I  Q  K  N  Y  I  F  T  I  S  F  S  R  F  Q  Q  V  I  T  I  L  V  P  P  N  L  V  F  C  S  V  C  *  S  *  S  R  I  F  F  K  V  A  N  V  I  I  S  V  F  E  S  R  K  P  Y  V  E  S  I  K  R  E  G  K  *  C  Q  A  S  *  R  R  Q  L  V  Q  *  K  I  K  Q  A  L  A  L  Q  K  F  Q  A  I  L  H  Q  L  L  K  L  L  S  *  K  L  Q  H  M  M  M  Y  L  S  M  I  D  T  F  K  K  S  S  N  L  C  H  L  T  R  P  T  R  L  P  V  L  V  P  L  A  N  A  *  V  E  R  G  I  G  S  L  P  S  N  H  *  C  L  S  *  E  S  S  K  M  V  I  L  T  S </first_frame>
            <second_frame>  Q  I  S  N  A  L  F  L  F  V  *  P  F  *  S  K  F  *  I  C  R  *  L  A  Y  G  C  E  W  L  I  P  *  C  W  S  R  L  Y  I  V  I  F  F  *  K  K  I  V  R  L  R  G  I  Q  G  V  P  L  I  L  H  S  T  N  *  T  P  I  T  K  I  *  F  R  E  K  K  K  K  K  F  S  N  *  F  F  Q  L  T  F  F  S  L  S  L  F  N  Q  K  L  L  I  N  I  E  S  K  K  I  T  F  L  Q  F  L  F  Q  D  F  N  K  L  *  Q  S  *  C  L  Q  I  L  C  F  V  L  F  V  D  H  N  R  V  F  F  L  K  S  R  M  *  S  F  R  C  L  N  Q  E  N  R  T  L  N  R  *  K  E  K  V  N  N  A  K  Q  V  E  E  G  N  W  C  S  K  R  S  N  K  H  *  P  C  K  S  F  K  Q  Y  F  I  N  S  *  S  C  C  L  K  S  Y  N  T  *  *  C  T  Y  R  *  S  I  R  S  R  S  H  Q  T  C  V  I  *  Q  G  L  R  G  C  L  C  S  C  H  W  Q  T  H  R  *  N  E  E  L  D  R  C  P  Q  I  I  D  A  C  L  K  N  L  P  R  W  *  S  L  L   </second_frame>
            <third_frame>   K  S  Q  T  L  Y  F  Y  L  S  N  P  F  N  R  N  F  R  F  V  A  D  S  R  M  D  V  S  G  *  Y  L  S  V  G  H  V  C  I  L  *  F  F  F  K  K  K  L  L  G  *  E  E  Y  K  E  S  L  S  F  F  T  A  Q  I  E  L  Q  *  Q  K  F  N  S  E  K  K  K  R  K  N  F  P  T  N  F  F  N  *  L  F  S  L  F  H  S  S  T  K  N  F  S  S  I  L  N  P  K  K  L  H  F  Y  N  F  F  F  K  I  S  T  S  Y  N  N  P  S  A  S  K  S  C  V  L  F  C  L  L  I  I  I  A  Y  F  F  *  S  R  E  C  D  H  F  G  V  *  I  K  K  T  V  R  *  I  D  K  K  R  R  *  I  M  P  S  K  L  K  K  A  I  G  A  V  K  D  Q  T  S  I  S  L  A  K  V  S  S  N  T  S  S  T  L  E  V  A  V  L  K  A  T  T  H  D  D  V  P  I  D  D  R  Y  V  Q  E  V  I  K  L  V  S  S  N  K  A  Y  A  A  A  C  A  R  A  I  G  K  R  I  G  R  T  R  N  W  I  V  A  L  K  S  L  M  L  V  L  R  I  F  Q  D  G  D  P  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109828" stop="109517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMPSKLKKAIGAVKDQTSISLAKVSSNTSSTLEVAVLKATTHDDVPIDDRYVQEVIKLVSSNKAYAAACARAIGKRIGRTRNWIVALKSLMLVLRIFQDGDPYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96348" PGL_stop="98768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96348" e_stop="96441"/>
            <exon e_start="96558" e_stop="96614"/>
            <exon e_start="96779" e_stop="96876"/>
            <exon e_start="97520" e_stop="97589"/>
            <exon e_start="97728" e_stop="97776"/>
            <exon e_start="97852" e_stop="97940"/>
            <exon e_start="98072" e_stop="98119"/>
            <exon e_start="98329" e_stop="98388"/>
            <exon e_start="98495" e_stop="98768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.929" e_score="0.990"/>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="0.989"/>
          <exon-intron don_prob="0.926" acc_prob="0.986" e_score="0.979"/>
          <exon-intron don_prob="0.955" acc_prob="0.972" e_score="0.983"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96348" e_stop="96441" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="96442" i_stop="96557" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96558" e_stop="96614" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96615" i_stop="96778" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="96779" e_stop="96876" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.929">
            <gDNA_intron_boundary i_start="96877" i_stop="97519" i_length="643"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97520" e_stop="97589" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97590" i_stop="97727" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97728" e_stop="97776" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.954">
            <gDNA_intron_boundary i_start="97777" i_stop="97851" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="97852" e_stop="97940" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97941" i_stop="98071" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="98072" e_stop="98119" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.986">
            <gDNA_intron_boundary i_start="98120" i_stop="98328" i_length="209"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="98329" e_stop="98388" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.972">
            <gDNA_intron_boundary i_start="98389" i_stop="98494" i_length="106"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="98495" e_stop="98768" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96348" stop="96441"/>
              <exon start="96558" stop="96614"/>
              <exon start="96779" stop="96876"/>
              <exon start="97520" stop="97589"/>
              <exon start="97728" stop="97776"/>
              <exon start="97852" stop="97940"/>
              <exon start="98072" stop="98119"/>
              <exon start="98329" stop="98388"/>
              <exon start="98495" stop="98768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTAGAAGCTTTAGCAGTCATCAAAGGTGAAGATGAAGCTGAAGCAATTAGAAAGTTATCTTGGTTCTCTTGAACAATTTTCAACCCCAAAG : ATTGAACTAGAACAATATCCTACTGGAGCCCACATTGCTTCTCGTATGCTTTACACT : GCTGAGAATTCATTTGAGGATGTGAACAGTAAGGTGGTTGCAGATTTTGGATGTGGTTGTGGTACATTAGGCCTTGCTGCTGGCCTTTTGGGAGCCGA : AAGTGTTATTGGGCTTGATATTGATGCTGAGTCTCTTGAGATTGCGTATGCAAATGCCGATGAGCTTGAG : CTAGACATGGATTTTATTCAATGCGACATCAGCAACTTAAAATGGAGAG : GTCAGATTGTTGAAACTGTGGTTATGAATCCACCTTTTGGAACACGGAGGAAAGGTGCTGACATGGACTTCCTCTCTTCGGCGATGAAG : GTTGCTTCTCAAGCAGTTTATTCCTTACATAAGACCACAACTAGAGAA : CATGTGAAAAGAGCAGCCTTGCGAGATTACAATGCAATAAGTGCTGAAGTTATATGTGAG : CTTCGGTATGATGTGCCACAACTGTACAAATTTCACAAGAAAAAGGAGGTTGACATTGCTGTGGACCTGTGGCGTTTTGTTCCTCAAAGAAAGCAAGAAAGATCTCTCTAGTATTATAAAAATAGCAAGTATACAGACATGATGATGCATGTAAAATTAAGGAAACCCCAATTCTGAACTGGAGCAGGATGGATTCTCATGTTGTTGCAAGTATTGTTCTATAAAGGATGTAAAGAGTATTCCATACCATATCTGCGTCTGCAAACTACTTTGG</gDNA_template>
            <first_frame> T  V  E  A  L  A  V  I  K  G  E  D  E  A  E  A  I  R  K  L  S  W  F  S  *  T  I  F  N  P  K   : D  *  T  R  T  I  S  Y  W  S  P  H  C  F  S  Y  A  L  H   : C  *  E  F  I  *  G  C  E  Q  *  G  G  C  R  F  W  M  W  L  W  Y  I  R  P  C  C  W  P  F  G  S  R  :  K  C  Y  W  A  *  Y  *  C  *  V  S  *  D  C  V  C  K  C  R  *  A  *   : A  R  H  G  F  Y  S  M  R  H  Q  Q  L  K  M  E  R :   S  D  C  *  N  C  G  Y  E  S  T  F  W  N  T  E  E  R  C  *  H  G  L  P  L  F  G  D  E   : G  C  F  S  S  S  L  F  L  T  *  D  H  N  *  R   : T  C  E  K  S  S  L  A  R  L  Q  C  N  K  C  *  S  Y  M  *   : A  S  V  *  C  A  T  T  V  Q  I  S  Q  E  K  G  G  *  H  C  C  G  P  V  A  F  C  S  S  K  K  A  R  K  I  S  L  V  L  *  K  *  Q  V  Y  R  H  D  D  A  C  K  I  K  E  T  P  I  L  N  W  S  R  M  D  S  H  V  V  A  S  I  V  L  *  R  M  *  R  V  F  H  T  I  S  A  S  A  N  Y  F   </first_frame>
            <second_frame>  Q  *  K  L  *  Q  S  S  K  V  K  M  K  L  K  Q  L  E  S  Y  L  G  S  L  E  Q  F  S  T  P  K  :  I  E  L  E  Q  Y  P  T  G  A  H  I  A  S  R  M  L  Y  T  :  A  E  N  S  F  E  D  V  N  S  K  V  V  A  D  F  G  C  G  C  G  T  L  G  L  A  A  G  L  L  G  A  E :   S  V  I  G  L  D  I  D  A  E  S  L  E  I  A  Y  A  N  A  D  E  L  E  :  L  D  M  D  F  I  Q  C  D  I  S  N  L  K  W  R   : G  Q  I  V  E  T  V  V  M  N  P  P  F  G  T  R  R  K  G  A  D  M  D  F  L  S  S  A  M  K  :  V  A  S  Q  A  V  Y  S  L  H  K  T  T  T  R  E  :  H  V  K  R  A  A  L  R  D  Y  N  A  I  S  A  E  V  I  C  E  :  L  R  Y  D  V  P  Q  L  Y  K  F  H  K  K  K  E  V  D  I  A  V  D  L  W  R  F  V  P  Q  R  K  Q  E  R  S  L  *  Y  Y  K  N  S  K  Y  T  D  M  M  M  H  V  K  L  R  K  P  Q  F  *  T  G  A  G  W  I  L  M  L  L  Q  V  L  F  Y  K  G  C  K  E  Y  S  I  P  Y  L  R  L  Q  T  T  L  </second_frame>
            <third_frame>   S  R  S  F  S  S  H  Q  R  *  R  *  S  *  S  N  *  K  V  I  L  V  L  L  N  N  F  Q  P  Q  R :   L  N  *  N  N  I  L  L  E  P  T  L  L  L  V  C  F  T  L :   L  R  I  H  L  R  M  *  T  V  R  W  L  Q  I  L  D  V  V  V  V  H  *  A  L  L  L  A  F  W  E  P   : K  V  L  L  G  L  I  L  M  L  S  L  L  R  L  R  M  Q  M  P  M  S  L  S :   *  T  W  I  L  F  N  A  T  S  A  T  *  N  G  E  :  V  R  L  L  K  L  W  L  *  I  H  L  L  E  H  G  G  K  V  L  T  W  T  S  S  L  R  R  *  R :   L  L  L  K  Q  F  I  P  Y  I  R  P  Q  L  E  N :   M  *  K  E  Q  P  C  E  I  T  M  Q  *  V  L  K  L  Y  V  S :   F  G  M  M  C  H  N  C  T  N  F  T  R  K  R  R  L  T  L  L  W  T  C  G  V  L  F  L  K  E  S  K  K  D  L  S  S  I  I  K  I  A  S  I  Q  T  *  *  C  M  *  N  *  G  N  P  N  S  E  L  E  Q  D  G  F  S  C  C  C  K  Y  C  S  I  K  D  V  K  S  I  P  Y  H  I  C  V  C  K  L  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96364" stop="96441"/>
                    <exon start="96558" stop="96614"/>
                    <exon start="96779" stop="96876"/>
                    <exon start="97520" stop="97589"/>
                    <exon start="97728" stop="97776"/>
                    <exon start="97852" stop="97940"/>
                    <exon start="98072" stop="98119"/>
                    <exon start="98329" stop="98388"/>
                    <exon start="98495" stop="98605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSKVKMKLKQLESYLGSLEQFSTPKIELEQYPTGAHIASRMLYTAENSFEDVNSKVVADFGCGCGTLGLAAGLLGAESVIGLDIDAESLEIAYANADELELDMDFIQCDISNLKWRGQIVETVVMNPPFGTRRKGADMDFLSSAMKVASQAVYSLHKTTTREHVKRAALRDYNAISAEVICELRYDVPQLYKFHKKKEVDIAVDLWRFVPQRKQERSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="118749" PGL_stop="123759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118749" e_stop="118857"/>
            <exon e_start="120441" e_stop="120686"/>
            <exon e_start="121127" e_stop="121336"/>
            <exon e_start="122099" e_stop="122179"/>
            <exon e_start="122286" e_stop="122372"/>
            <exon e_start="122711" e_stop="122806"/>
            <exon e_start="122929" e_stop="122982"/>
            <exon e_start="123152" e_stop="123759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.332" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.824" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118749" e_stop="118857" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="118858" i_stop="120440" i_length="1583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120441" e_stop="120686" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120687" i_stop="121126" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121127" e_stop="121336" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="121337" i_stop="122098" i_length="762"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122099" e_stop="122179" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.332">
            <gDNA_intron_boundary i_start="122180" i_stop="122285" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="122286" e_stop="122372" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122373" i_stop="122710" i_length="338"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122711" e_stop="122806" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="122807" i_stop="122928" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122929" e_stop="122982" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.824">
            <gDNA_intron_boundary i_start="122983" i_stop="123151" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123152" e_stop="123759" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118749" stop="118857"/>
              <exon start="120441" stop="120686"/>
              <exon start="121127" stop="121277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121218" stop="121336"/>
              <exon start="122099" stop="122179"/>
              <exon start="122286" stop="122372"/>
              <exon start="122711" stop="122806"/>
              <exon start="122929" stop="122982"/>
              <exon start="123152" stop="123759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322423" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCACATCTTCAATTTCTTCCCCAAATTTGAAAAAAAAAATCTCATTTTTGCGATTGATTATTCTCATAGATCATCGATCATCATCAATCTCTCGAATCAGAAAAG : ATAAAGAAATCCATGCAGCAACAGGAGACATGTCGATTATCTGTTTTATGGAGAGGAACGAAGTTTAGTCTGGATATGGATCCATCTGCTACTCTCAAATCACTGGGGGATGAATTGCTGAATCTCACCAACGTTAGAGAAGATACGATGCGCCTCATTGTGCCTACTAATAAAAGTTCAAGACTCTTGTATCCTTTCTCTGAAGAGCACTCCTACCTGAAATTGGAGGCAGCATCCATTCTTGAG : GGTAAGTCTATTAGGATGTTGGGAGTGCCCAACGATGAAGTAGATGACATTTTACAGAGTGCAAAGGCAGACCTCAGGATTGTGGGTTTTGATGAAGAGGAAAAGAGATTGAGACGAAGAATCTCAAATGGGCTTCAGAGTTCACTAAAACTTCCACAAGGGCCTTATGTCTTTGGTGATTTTCGGACACTCCATCTTCCTGGTATAGAG : TTGAATCCTCCTGCTTCAAAAGCTTTAAAACTAATGCACAAGCTTGCTGCTGATCCAGGAATTGTTGCAATCATGAATAAG : CATCGCTGGCACGTAGGAATCATGACAGAGATGGCACCAGAAGGCTATGTTGGTGTTAGTCCTGAATGCATTCTTGGCTTCAATAAG : AATCACGGCGAGGAGATATCACTACGTCTTCGTACAGATGACCTCAAGGGTTTTAGGAAGTATGATAGCATCAAGAAGACACTCTTGCATGAACTT : TCACACATGGTACATTCTGAACATGACATGAACTTCTATGCTCTGCTTAAGCAG : CTTAATGAAGAAGCTGATAAGTTGGACTGGACTAAATCAAGAGGTCATAGTTTGAGTGGTCACAGTTTGCAACACTATGAAGAAGATGAGGACAGCGATAATATAATTGGGTTATCACATAAACTTGGAGGACAAACTTCAGTTTTCAATGCTCGAGCATCTTCAGTGGTTGCTGCCTACAGCCGTTTAGCACAGGCATCCACCAACCCCTCAGAAGCAACTGTAATGCGTCAGGCCTCTAATGCTGGTGACTCAGTGCAATCCAATCATGTAGATGTTCTAGTGGAAAACCAACTGAATGGTGTGAAGGTAGCTAGTGTTGATGTCCCATCTGATGATCAAAGAAAATCAGAACCTGATCCTGATGATTGCGAGACTGGCTCTCCTGTGAAAGATGAGCCTCGTATGGACCTTGATTCTGATGATAATAAGATGAGAAGTCTTCCGCCTCCTATGGAAGCTAAATTAAGTGAAGAACCTGACCCGGATGATTGCTCTGCAGAAAAACACAATACAGCAACTCCTACTTCTTTGGAACCTGATCCTGATGAGTGGACTATGGGGATCGAAAAGAAAGTAACAGATGGTCAAAATAGCCATGTTTCTTT</gDNA_template>
            <first_frame> F  F  T  S  S  I  S  S  P  N  L  K  K  K  I  S  F  L  R  L  I  I  L  I  D  H  R  S  S  S  I  S  R  I  R  K   : D  K  E  I  H  A  A  T  G  D  M  S  I  I  C  F  M  E  R  N  E  V  *  S  G  Y  G  S  I  C  Y  S  Q  I  T  G  G  *  I  A  E  S  H  Q  R  *  R  R  Y  D  A  P  H  C  A  Y  *  *  K  F  K  T  L  V  S  F  L  *  R  A  L  L  P  E  I  G  G  S  I  H  S  *   : G  *  V  Y  *  D  V  G  S  A  Q  R  *  S  R  *  H  F  T  E  C  K  G  R  P  Q  D  C  G  F  *  *  R  G  K  E  I  E  T  K  N  L  K  W  A  S  E  F  T  K  T  S  T  R  A  L  C  L  W  *  F  S  D  T  P  S  S  W  Y  R   : V  E  S  S  C  F  K  S  F  K  T  N  A  Q  A  C  C  *  S  R  N  C  C  N  H  E  *   : A  S  L  A  R  R  N  H  D  R  D  G  T  R  R  L  C  W  C  *  S  *  M  H  S  W  L  Q  *   : E  S  R  R  G  D  I  T  T  S  S  Y  R  *  P  Q  G  F  *  E  V  *  *  H  Q  E  D  T  L  A  *  T   : F  T  H  G  T  F  *  T  *  H  E  L  L  C  S  A  *  A   : A  *  *  R  S  *  *  V  G  L  D  *  I  K  R  S  *  F  E  W  S  Q  F  A  T  L  *  R  R  *  G  Q  R  *  Y  N  W  V  I  T  *  T  W  R  T  N  F  S  F  Q  C  S  S  I  F  S  G  C  C  L  Q  P  F  S  T  G  I  H  Q  P  L  R  S  N  C  N  A  S  G  L  *  C  W  *  L  S  A  I  Q  S  C  R  C  S  S  G  K  P  T  E  W  C  E  G  S  *  C  *  C  P  I  *  *  S  K  K  I  R  T  *  S  *  *  L  R  D  W  L  S  C  E  R  *  A  S  Y  G  P  *  F  *  *  *  *  D  E  K  S  S  A  S  Y  G  S  *  I  K  *  R  T  *  P  G  *  L  L  C  R  K  T  Q  Y  S  N  S  Y  F  F  G  T  *  S  *  *  V  D  Y  G  D  R  K  E  S  N  R  W  S  K  *  P  C  F  F </first_frame>
            <second_frame>  S  S  H  L  Q  F  L  P  Q  I  *  K  K  K  S  H  F  C  D  *  L  F  S  *  I  I  D  H  H  Q  S  L  E  S  E  K  :  I  K  K  S  M  Q  Q  Q  E  T  C  R  L  S  V  L  W  R  G  T  K  F  S  L  D  M  D  P  S  A  T  L  K  S  L  G  D  E  L  L  N  L  T  N  V  R  E  D  T  M  R  L  I  V  P  T  N  K  S  S  R  L  L  Y  P  F  S  E  E  H  S  Y  L  K  L  E  A  A  S  I  L  E  :  G  K  S  I  R  M  L  G  V  P  N  D  E  V  D  D  I  L  Q  S  A  K  A  D  L  R  I  V  G  F  D  E  E  E  K  R  L  R  R  R  I  S  N  G  L  Q  S  S  L  K  L  P  Q  G  P  Y  V  F  G  D  F  R  T  L  H  L  P  G  I  E  :  L  N  P  P  A  S  K  A  L  K  L  M  H  K  L  A  A  D  P  G  I  V  A  I  M  N  K  :  H  R  W  H  V  G  I  M  T  E  M  A  P  E  G  Y  V  G  V  S  P  E  C  I  L  G  F  N  K  :  N  H  G  E  E  I  S  L  R  L  R  T  D  D  L  K  G  F  R  K  Y  D  S  I  K  K  T  L  L  H  E  L  :  S  H  M  V  H  S  E  H  D  M  N  F  Y  A  L  L  K  Q  :  L  N  E  E  A  D  K  L  D  W  T  K  S  R  G  H  S  L  S  G  H  S  L  Q  H  Y  E  E  D  E  D  S  D  N  I  I  G  L  S  H  K  L  G  G  Q  T  S  V  F  N  A  R  A  S  S  V  V  A  A  Y  S  R  L  A  Q  A  S  T  N  P  S  E  A  T  V  M  R  Q  A  S  N  A  G  D  S  V  Q  S  N  H  V  D  V  L  V  E  N  Q  L  N  G  V  K  V  A  S  V  D  V  P  S  D  D  Q  R  K  S  E  P  D  P  D  D  C  E  T  G  S  P  V  K  D  E  P  R  M  D  L  D  S  D  D  N  K  M  R  S  L  P  P  P  M  E  A  K  L  S  E  E  P  D  P  D  D  C  S  A  E  K  H  N  T  A  T  P  T  S  L  E  P  D  P  D  E  W  T  M  G  I  E  K  K  V  T  D  G  Q  N  S  H  V  S   </second_frame>
            <third_frame>   L  H  I  F  N  F  F  P  K  F  E  K  K  N  L  I  F  A  I  D  Y  S  H  R  S  S  I  I  I  N  L  S  N  Q  K  R :   *  R  N  P  C  S  N  R  R  H  V  D  Y  L  F  Y  G  E  E  R  S  L  V  W  I  W  I  H  L  L  L  S  N  H  W  G  M  N  C  *  I  S  P  T  L  E  K  I  R  C  A  S  L  C  L  L  I  K  V  Q  D  S  C  I  L  S  L  K  S  T  P  T  *  N  W  R  Q  H  P  F  L  R :   V  S  L  L  G  C  W  E  C  P  T  M  K  *  M  T  F  Y  R  V  Q  R  Q  T  S  G  L  W  V  L  M  K  R  K  R  D  *  D  E  E  S  Q  M  G  F  R  V  H  *  N  F  H  K  G  L  M  S  L  V  I  F  G  H  S  I  F  L  V  *  S :   *  I  L  L  L  Q  K  L  *  N  *  C  T  S  L  L  L  I  Q  E  L  L  Q  S  *  I  S :   I  A  G  T  *  E  S  *  Q  R  W  H  Q  K  A  M  L  V  L  V  L  N  A  F  L  A  S  I  R :   I  T  A  R  R  Y  H  Y  V  F  V  Q  M  T  S  R  V  L  G  S  M  I  A  S  R  R  H  S  C  M  N  F :   H  T  W  Y  I  L  N  M  T  *  T  S  M  L  C  L  S  S :   L  M  K  K  L  I  S  W  T  G  L  N  Q  E  V  I  V  *  V  V  T  V  C  N  T  M  K  K  M  R  T  A  I  I  *  L  G  Y  H  I  N  L  E  D  K  L  Q  F  S  M  L  E  H  L  Q  W  L  L  P  T  A  V  *  H  R  H  P  P  T  P  Q  K  Q  L  *  C  V  R  P  L  M  L  V  T  Q  C  N  P  I  M  *  M  F  *  W  K  T  N  *  M  V  *  R  *  L  V  L  M  S  H  L  M  I  K  E  N  Q  N  L  I  L  M  I  A  R  L  A  L  L  *  K  M  S  L  V  W  T  L  I  L  M  I  I  R  *  E  V  F  R  L  L  W  K  L  N  *  V  K  N  L  T  R  M  I  A  L  Q  K  N  T  I  Q  Q  L  L  L  L  W  N  L  I  L  M  S  G  L  W  G  S  K  R  K  *  Q  M  V  K  I  A  M  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118822" stop="118857"/>
                    <exon start="120441" stop="120686"/>
                    <exon start="121127" stop="121336"/>
                    <exon start="122099" stop="122179"/>
                    <exon start="122286" stop="122372"/>
                    <exon start="122711" stop="122806"/>
                    <exon start="122929" stop="122982"/>
                    <exon start="123152" stop="123757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIDHHQSLESEKIKKSMQQQETCRLSVLWRGTKFSLDMDPSATLKSLGDELLNLTNVREDTMRLIVPTNKSSRLLYPFSEEHSYLKLEAASILEGKSIRMLGVPNDEVDDILQSAKADLRIVGFDEEEKRLRRRISNGLQSSLKLPQGPYVFGDFRTLHLPGIELNPPASKALKLMHKLAADPGIVAIMNKHRWHVGIMTEMAPEGYVGVSPECILGFNKNHGEEISLRLRTDDLKGFRKYDSIKKTLLHELSHMVHSEHDMNFYALLKQLNEEADKLDWTKSRGHSLSGHSLQHYEEDEDSDNIIGLSHKLGGQTSVFNARASSVVAAYSRLAQASTNPSEATVMRQASNAGDSVQSNHVDVLVENQLNGVKVASVDVPSDDQRKSEPDPDDCETGSPVKDEPRMDLDSDDNKMRSLPPPMEAKLSEEPDPDDCSAEKHNTATPTSLEPDPDEWTMGIEKKVTDGQNSHVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="124858" PGL_stop="125178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124858" e_stop="125178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="124858" e_stop="125178" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124858" stop="125178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339985" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTGTCTGTGATTGGATTCAATGAAGACGCTATTATCGACGAAACTGGTAGAACAGAAGCTTATTTAGTCCTCAAAAGGAATGATCCAGGATTATTGTGGCTTGCCAAGTCTTCCCTTGAAGCCTCCATTGCCTAGAGGACTTTGTACTATATGTAAAATTGATGCATTTGTTTGTGAAAAGTCTAATAAAGGATGAAGACAGTTCTTTATGTGGTATTTGAACATTTTCCTGTGTTGTAAATCACATTTTGAAATTGACCATTTCCTTGTACATATACATACATCCTTATAAGAAACTGAAACAATTGTACTTCTATTT</gDNA_template>
            <first_frame> S  C  L  *  L  D  S  M  K  T  L  L  S  T  K  L  V  E  Q  K  L  I  *  S  S  K  G  M  I  Q  D  Y  C  G  L  P  S  L  P  L  K  P  P  L  P  R  G  L  C  T  I  C  K  I  D  A  F  V  C  E  K  S  N  K  G  *  R  Q  F  F  M  W  Y  L  N  I  F  L  C  C  K  S  H  F  E  I  D  H  F  L  V  H  I  H  T  S  L  *  E  T  E  T  I  V  L  L  F </first_frame>
            <second_frame>  P  V  C  D  W  I  Q  *  R  R  Y  Y  R  R  N  W  *  N  R  S  L  F  S  P  Q  K  E  *  S  R  I  I  V  A  C  Q  V  F  P  *  S  L  H  C  L  E  D  F  V  L  Y  V  K  L  M  H  L  F  V  K  S  L  I  K  D  E  D  S  S  L  C  G  I  *  T  F  S  C  V  V  N  H  I  L  K  L  T  I  S  L  Y  I  Y  I  H  P  Y  K  K  L  K  Q  L  Y  F  Y   </second_frame>
            <third_frame>   L  S  V  I  G  F  N  E  D  A  I  I  D  E  T  G  R  T  E  A  Y  L  V  L  K  R  N  D  P  G  L  L  W  L  A  K  S  S  L  E  A  S  I  A  *  R  T  L  Y  Y  M  *  N  *  C  I  C  L  *  K  V  *  *  R  M  K  T  V  L  Y  V  V  F  E  H  F  P  V  L  *  I  T  F  *  N  *  P  F  P  C  T  Y  T  Y  I  L  I  R  N  *  N  N  C  T  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0026C13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="130922" PGL_stop="131554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130922" e_stop="131554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130922" e_stop="131554" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130922" stop="131554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATTCTTGATATCAATTTCCAACATTTCCCTCAGTTTCCTAGTGAGATAATGCAACTTGTTAATTTGCGTTACCTTGCATTGGCCACTAGTAGTGAATTCCCTCCAACGGTATCACAATTTTGGAGTTTGCAGACTTTAATTCTTCATGTGTATTCAAGAAACTCGACTTTGCCTCGGGAGATTTGGAAGATGCCAAACCTCAGACATCTTCATATTAAACCAAGCATCTGTTTGCCAAGCCAAACCAATGAAGAACGTAACGGATACAATTCATTGGTCTTGAATAACCTACAAACACTTACCAACATTACCCTTGCAGATTGTACAACAGATGTCTTCTCAAGCACTCCTAAGTTGAAGAAATTGGGAATATGTGAAACGGTCGAGTATACTTATCCAGTCCAGATTCCGTGGAGTGATTTTCTTTACACGTCTGAAAATCTGTGGCCTTATTGTAGTGATACAATATCAGACTTGTGGTCAGATTGCCTTAGAAATCTCGCTCTCCTACCTCAACTCGAAGCATTAAAGATTGTTGGGTTGAGAGCACCTGTACAAGTACCGAAATTAGCATTTCATCTCGATGCACTTCCAGAGAATCTCAAGAAGTTAACTTTGAGCTTCACCTAC</gDNA_template>
            <first_frame> D  I  L  D  I  N  F  Q  H  F  P  Q  F  P  S  E  I  M  Q  L  V  N  L  R  Y  L  A  L  A  T  S  S  E  F  P  P  T  V  S  Q  F  W  S  L  Q  T  L  I  L  H  V  Y  S  R  N  S  T  L  P  R  E  I  W  K  M  P  N  L  R  H  L  H  I  K  P  S  I  C  L  P  S  Q  T  N  E  E  R  N  G  Y  N  S  L  V  L  N  N  L  Q  T  L  T  N  I  T  L  A  D  C  T  T  D  V  F  S  S  T  P  K  L  K  K  L  G  I  C  E  T  V  E  Y  T  Y  P  V  Q  I  P  W  S  D  F  L  Y  T  S  E  N  L  W  P  Y  C  S  D  T  I  S  D  L  W  S  D  C  L  R  N  L  A  L  L  P  Q  L  E  A  L  K  I  V  G  L  R  A  P  V  Q  V  P  K  L  A  F  H  L  D  A  L  P  E  N  L  K  K  L  T  L  S  F  T  Y </first_frame>
            <second_frame>  I  F  L  I  S  I  S  N  I  S  L  S  F  L  V  R  *  C  N  L  L  I  C  V  T  L  H  W  P  L  V  V  N  S  L  Q  R  Y  H  N  F  G  V  C  R  L  *  F  F  M  C  I  Q  E  T  R  L  C  L  G  R  F  G  R  C  Q  T  S  D  I  F  I  L  N  Q  A  S  V  C  Q  A  K  P  M  K  N  V  T  D  T  I  H  W  S  *  I  T  Y  K  H  L  P  T  L  P  L  Q  I  V  Q  Q  M  S  S  Q  A  L  L  S  *  R  N  W  E  Y  V  K  R  S  S  I  L  I  Q  S  R  F  R  G  V  I  F  F  T  R  L  K  I  C  G  L  I  V  V  I  Q  Y  Q  T  C  G  Q  I  A  L  E  I  S  L  S  Y  L  N  S  K  H  *  R  L  L  G  *  E  H  L  Y  K  Y  R  N  *  H  F  I  S  M  H  F  Q  R  I  S  R  S  *  L  *  A  S  P   </second_frame>
            <third_frame>   Y  S  *  Y  Q  F  P  T  F  P  S  V  S  *  *  D  N  A  T  C  *  F  A  L  P  C  I  G  H  *  *  *  I  P  S  N  G  I  T  I  L  E  F  A  D  F  N  S  S  C  V  F  K  K  L  D  F  A  S  G  D  L  E  D  A  K  P  Q  T  S  S  Y  *  T  K  H  L  F  A  K  P  N  Q  *  R  T  *  R  I  Q  F  I  G  L  E  *  P  T  N  T  Y  Q  H  Y  P  C  R  L  Y  N  R  C  L  L  K  H  S  *  V  E  E  I  G  N  M  *  N  G  R  V  Y  L  S  S  P  D  S  V  E  *  F  S  L  H  V  *  K  S  V  A  L  L  *  *  Y  N  I  R  L  V  V  R  L  P  *  K  S  R  S  P  T  S  T  R  S  I  K  D  C  W  V  E  S  T  C  T  S  T  E  I  S  I  S  S  R  C  T  S  R  E  S  Q  E  V  N  F  E  L  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130922" stop="131554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILDINFQHFPQFPSEIMQLVNLRYLALATSSEFPPTVSQFWSLQTLILHVYSRNSTLPREIWKMPNLRHLHIKPSICLPSQTNEERNGYNSLVLNNLQTLTNITLADCTTDVFSSTPKLKKLGICETVEYTYPVQIPWSDFLYTSENLWPYCSDTISDLWSDCLRNLALLPQLEALKIVGLRAPVQVPKLAFHLDALPENLKKLTLSFTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="133795" PGL_stop="134556"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133795" e_stop="134556"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="133795" e_stop="134556" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133795" stop="134556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTTTACGCTTATCAACTTCATCTCTATGGAAAATAATCATAAAAAACATTAATTTACACAATTCCGATCAATTTAGTGGCCGCCGGCGACAATTTCCGACAACCCCATCTCCTATTTTAAATTACCGGCCATGCCCCGTCGGAAAAATCCGGAGATAAATGGATCAAGATCCGTTGTTTTCCAACAGTCGGTGATTGAGCCACCTCGTTATAGGGGTGTACGTAAACGGCCATGGGGTCGATTTTCTGCTGAGATAAGGGATCCGGTGAAAAAAGCTCGTAAATGGCTGGGAACGTTTGATACAGCGGAGGGTGCTGCACGAGCTTATGATACTGCTGCAAGGTCTTTTCATGGAGCTAAAGCAAAAACTAACTTCCCAGTATTGCCTCCTTATGGGGAGAATCAATTTGAAAATCTTCAACAATCAAGGCCGGCGTCGAGTAGTATGAGTAGCACGGTGGAATCATCGAGTGATGCGCGTGCATTGTGTAAAACGATGCAACCGCGGATTGAAATTCCCCGCCGGATTCCGATGGGGGAAGGTCATAGTGATTGTGATTCGTCGTCTTCTGTGGTGGATGGTAATTGCATTGGCGGCGGCGGTGGCGATGATGATCAGACGTCGTCGTTTTGTAAAGATCCTCTGCCGTTTGATTTAAACTTTCCACCTCCCTCTGATGATTTTCAAATCATCACCCCTTTGTGTTTCTAGTTAATTTTGATGATTATGATTGAAAAAAAAATAACTTTTTTTCTCT</gDNA_template>
            <first_frame> V  F  L  R  L  S  T  S  S  L  W  K  I  I  I  K  N  I  N  L  H  N  S  D  Q  F  S  G  R  R  R  Q  F  P  T  T  P  S  P  I  L  N  Y  R  P  C  P  V  G  K  I  R  R  *  M  D  Q  D  P  L  F  S  N  S  R  *  L  S  H  L  V  I  G  V  Y  V  N  G  H  G  V  D  F  L  L  R  *  G  I  R  *  K  K  L  V  N  G  W  E  R  L  I  Q  R  R  V  L  H  E  L  M  I  L  L  Q  G  L  F  M  E  L  K  Q  K  L  T  S  Q  Y  C  L  L  M  G  R  I  N  L  K  I  F  N  N  Q  G  R  R  R  V  V  *  V  A  R  W  N  H  R  V  M  R  V  H  C  V  K  R  C  N  R  G  L  K  F  P  A  G  F  R  W  G  K  V  I  V  I  V  I  R  R  L  L  W  W  M  V  I  A  L  A  A  A  V  A  M  M  I  R  R  R  R  F  V  K  I  L  C  R  L  I  *  T  F  H  L  P  L  M  I  F  K  S  S  P  L  C  V  S  S  *  F  *  *  L  *  L  K  K  K  *  L  F  F  S </first_frame>
            <second_frame>  Y  F  Y  A  Y  Q  L  H  L  Y  G  K  *  S  *  K  T  L  I  Y  T  I  P  I  N  L  V  A  A  G  D  N  F  R  Q  P  H  L  L  F  *  I  T  G  H  A  P  S  E  K  S  G  D  K  W  I  K  I  R  C  F  P  T  V  G  D  *  A  T  S  L  *  G  C  T  *  T  A  M  G  S  I  F  C  *  D  K  G  S  G  E  K  S  S  *  M  A  G  N  V  *  Y  S  G  G  C  C  T  S  L  *  Y  C  C  K  V  F  S  W  S  *  S  K  N  *  L  P  S  I  A  S  L  W  G  E  S  I  *  K  S  S  T  I  K  A  G  V  E  *  Y  E  *  H  G  G  I  I  E  *  C  A  C  I  V  *  N  D  A  T  A  D  *  N  S  P  P  D  S  D  G  G  R  S  *  *  L  *  F  V  V  F  C  G  G  W  *  L  H  W  R  R  R  W  R  *  *  S  D  V  V  V  L  *  R  S  S  A  V  *  F  K  L  S  T  S  L  *  *  F  S  N  H  H  P  F  V  F  L  V  N  F  D  D  Y  D  *  K  K  N  N  F  F  S   </second_frame>
            <third_frame>   I  F  T  L  I  N  F  I  S  M  E  N  N  H  K  K  H  *  F  T  Q  F  R  S  I  *  W  P  P  A  T  I  S  D  N  P  I  S  Y  F  K  L  P  A  M  P  R  R  K  N  P  E  I  N  G  S  R  S  V  V  F  Q  Q  S  V  I  E  P  P  R  Y  R  G  V  R  K  R  P  W  G  R  F  S  A  E  I  R  D  P  V  K  K  A  R  K  W  L  G  T  F  D  T  A  E  G  A  A  R  A  Y  D  T  A  A  R  S  F  H  G  A  K  A  K  T  N  F  P  V  L  P  P  Y  G  E  N  Q  F  E  N  L  Q  Q  S  R  P  A  S  S  S  M  S  S  T  V  E  S  S  S  D  A  R  A  L  C  K  T  M  Q  P  R  I  E  I  P  R  R  I  P  M  G  E  G  H  S  D  C  D  S  S  S  S  V  V  D  G  N  C  I  G  G  G  G  G  D  D  D  Q  T  S  S  F  C  K  D  P  L  P  F  D  L  N  F  P  P  P  S  D  D  F  Q  I  I  T  P  L  C  F  *  L  I  L  M  I  M  I  E  K  K  I  T  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133875" stop="134510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPPATISDNPISYFKLPAMPRRKNPEINGSRSVVFQQSVIEPPRYRGVRKRPWGRFSAEIRDPVKKARKWLGTFDTAEGAARAYDTAARSFHGAKAKTNFPVLPPYGENQFENLQQSRPASSSMSSTVESSSDARALCKTMQPRIEIPRRIPMGEGHSDCDSSSSVVDGNCIGGGGGDDDQTSSFCKDPLPFDLNFPPPSDDFQIITPLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="138194" PGL_stop="149905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138194" e_stop="138760"/>
            <exon e_start="141519" e_stop="141596"/>
            <exon e_start="143586" e_stop="143745"/>
            <exon e_start="144076" e_stop="144435"/>
            <exon e_start="145262" e_stop="145419"/>
            <exon e_start="145559" e_stop="145624"/>
            <exon e_start="145983" e_stop="146061"/>
            <exon e_start="147327" e_stop="147482"/>
            <exon e_start="147567" e_stop="147665"/>
            <exon e_start="148093" e_stop="148197"/>
            <exon e_start="148768" e_stop="148947"/>
            <exon e_start="149099" e_stop="149209"/>
            <exon e_start="149438" e_stop="149905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.707" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="138194" e_stop="138760" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.936">
            <gDNA_intron_boundary i_start="138761" i_stop="141518" i_length="2758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="141519" e_stop="141596" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.756">
            <gDNA_intron_boundary i_start="141597" i_stop="143585" i_length="1989"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143586" e_stop="143745" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="143746" i_stop="144075" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144076" e_stop="144435" e_length="360"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.994">
            <gDNA_intron_boundary i_start="144436" i_stop="145261" i_length="826"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="145262" e_stop="145419" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145420" i_stop="145558" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="145559" e_stop="145624" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="145625" i_stop="145982" i_length="358"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="145983" e_stop="146061" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.707" acc_prob="0.996">
            <gDNA_intron_boundary i_start="146062" i_stop="147326" i_length="1265"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="147327" e_stop="147482" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="147483" i_stop="147566" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="147567" e_stop="147665" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.904" acc_prob="0.994">
            <gDNA_intron_boundary i_start="147666" i_stop="148092" i_length="427"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="148093" e_stop="148197" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="148198" i_stop="148767" i_length="570"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="148768" e_stop="148947" e_length="180"/>
          </exon>
          <intron i_serial="11" don_prob="0.983" acc_prob="0.989">
            <gDNA_intron_boundary i_start="148948" i_stop="149098" i_length="151"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="149099" e_stop="149209" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="149210" i_stop="149437" i_length="228"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="149438" e_stop="149905" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138194" stop="138760"/>
              <exon start="141519" stop="141596"/>
              <exon start="143586" stop="143745"/>
              <exon start="144076" stop="144435"/>
              <exon start="145262" stop="145419"/>
              <exon start="145559" stop="145624"/>
              <exon start="145983" stop="146061"/>
              <exon start="147327" stop="147482"/>
              <exon start="147567" stop="147665"/>
              <exon start="148093" stop="148197"/>
              <exon start="148768" stop="148947"/>
              <exon start="149099" stop="149209"/>
              <exon start="149438" stop="149905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGATGAACAGTCAAGAACTTGTTTGGGGTTGAAGTATAGTTGATTCTTGAAAATACCCAATTTGCAAAAACTTGTTTTGGGTTGAGGGGTAGTTGATTCTTGAAAAATACCCAATTTGCTAAGAACTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTTGCTAAAAAGTTGTTTGGGGTTGAGGGGTAGTTGATTATTGAAAAATACCCAATTTGCAGTTGGGGGTATAGAGGGAGATGGTGGAAAGTTCAGTTGGAGGGGTGGTGCCAGCAGTGAAGGGGGAGGTGATGAGGAGGATGGGGGACAAAGAGGAGGGGGGTAGTGTAACTCTAAGGGATGAAGAAGTTGGGACAGTGACAGAATGGGAATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG : CTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG : ACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAGAGGAAATTGGAACAGGAGGAAGCAGAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAG : GTGCAACATGATCTGCAATACATCAAAGAGGACTTAAATTCAGTAGAGAGACATAGAATAGACCTATACCGGGCTAGGGACCGGTATTCAATGAAGCTCCGAATGTTAGCAGATGATCCTATTGGGAAAAAACCTTGGTCTTCATCAACTGATAGGAACTTTGGTGGTCTTTTCTCCACTTCACGAAATGCACCTGGAGGATTACCGACTGGAAACTTGACATTCAAAAAGGTGGACAGCAAAGCTCAAATAAGCTCTCCTGGACCACAGAGAAAAGATACTTCAATCAGTGAACTGAACTCACAACATATGAGTCAATCAGGTCTGGCTGTGGTTAGGAAGAAGCGTGTCAATGCACAG : TTCAATGATCTCCAAGAATGTTACTTGCAAAAGAGACGTCAATTGGCAAACAAATCGCGAGTTAAGGAAGAAAAGGATGCAGATGTCGTACAAAGAGAAGGTTACAGTGAAGGACTAGCAGATTTTCAGTCTGTACTTAGCACTTTCACTCGTTATAG : TCGGTTAAGAGTCATTGCTGAACTTCGGCATGGGGATCTGTTTCACTCGGCCAATATTGTTTCAAG : CATTGAATTTGATCGGGATGATGAGTTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCA : GTTGTAAATGAACCTGCAGATGCACACTGCCCTGTTGTTGAAATGTCTACCCGATCTAAGCTGAGCTGCTTGAGTTGGAATAAGTATACCAAGAACCACATAGCTAGTAGTGATTATGATGGAATAGTAACTGTATGGGATGTGACGACTAGACAG : AGTGTGATGGAATATGAAGAGCATGAGAAACGGGCTTGGAGTGTTGATTTTTCACGCACAGAACCCTCGATGCTTGTATCTGGCAGTGATGATTGTAAG : GTCAAAGTTTGGTGCACGAAGCAGGAAGCAAGTGTTCTTAATATTGACATGAAGGCAAATATATGCTGTGTAAAATATAATCCTGGATCTAGTGTTCATATAGCG : GTTGGCTCTGCGGATCATCATATTCATTATTATGACTTGAGGAACACCAGCCAGCCGGTTCACATTTTTAGTGGCCATAGAAAAGCTGTTTCATATGTAAAATTTTTGTCCAACAATGAACTTGCTTCAGCATCAACAGACAGTACTCTACGATTGTGGGATGTAAAAGATAATTTGCCG : GTTCGCACGCTTAGAGGACATACGAATGAGAAGAACTTTGTTGGTCTCTCAGTGAACAATGAATTCCTGTCATGTGGCAGTGAAACAAATGAAGTATTCGTGTACCATAAG : GCGATATCCAAACCCGTGACTTGGCATAGATTTGGTTCCCCAGACATAGACGAAGCGGATGAAGATGCAGGATCTTATTTCATCAGCGCAGTGTGCTGGAAGAGCGATAGCCCTACGATGCTAGCTGCTAATAGCCAGGGAACTATAAAAGTGTTAGTCCTTGCAGCTTGATGAAGTTAATAAAGCTACTAGTTAAGAATGTTCAAATCTTTTTAGTGGAAAAACAGTGAAATGGAATTTCACATTCAATTTTTCCTGTAGATATCTATTCAACCATCAAGATGGCATGGTTCCCCCCATATTTGTCAATGTATTCATCATTAAAACATGTAACACAAGTTGTAGGGCTTGGTAAATTTAGAAGAATTTTACAAGTTTGTGTTTTTTTTTTTCATTGTGCTGAAGGACATCGGATTTACACACCATTTCATGGAATAAACTTTACTCGTATTCAGTGTTTACACCAAA</gDNA_template>
            <first_frame> T  D  E  Q  S  R  T  C  L  G  L  K  Y  S  *  F  L  K  I  P  N  L  Q  K  L  V  L  G  *  G  V  V  D  S  *  K  I  P  N  L  L  R  T  C  L  G  L  R  G  S  *  L  L  K  N  T  Q  F  C  *  K  V  V  W  G  *  G  V  V  D  Y  *  K  I  P  N  L  Q  L  G  V  *  R  E  M  V  E  S  S  V  G  G  V  V  P  A  V  K  G  E  V  M  R  R  M  G  D  K  E  E  G  G  S  V  T  L  R  D  E  E  V  G  T  V  T  E  W  E  L  D  R  E  L  L  C  P  I  C  M  Q  I  I  K  D  A  F  L  T  A  C  G  H  S  F  C  Y  M  C  I  V  T  H  L  H  N  K  S  D  C  P  C  C  S  H  Y  L  T  T  S  Q  L  Y  P  N  F  L  L  D  K  :  L  L  K  K  T  S  A  R  Q  I  S  K  T  A  S  P  V  E  Q  F  R  H  S  L  E  Q  :  T  G  F  *  S  V  N  *  G  A  G  R  S  I  V  D  V  V  R  E  K  E  E  I  G  T  G  G  S  R  A  K  Y  A  N  S  A  R  L  L  T  D  V  K  E  A  K  S  *  *  T  Q  *   : G  A  T  *  S  A  I  H  Q  R  G  L  K  F  S  R  E  T  *  N  R  P  I  P  G  *  G  P  V  F  N  E  A  P  N  V  S  R  *  S  Y  W  E  K  T  L  V  F  I  N  *  *  E  L  W  W  S  F  L  H  F  T  K  C  T  W  R  I  T  D  W  K  L  D  I  Q  K  G  G  Q  Q  S  S  N  K  L  S  W  T  T  E  K  R  Y  F  N  Q  *  T  E  L  T  T  Y  E  S  I  R  S  G  C  G  *  E  E  A  C  Q  C  T   : V  Q  *  S  P  R  M  L  L  A  K  E  T  S  I  G  K  Q  I  A  S  *  G  R  K  G  C  R  C  R  T  K  R  R  L  Q  *  R  T  S  R  F  S  V  C  T  *  H  F  H  S  L  *  :  S  V  K  S  H  C  *  T  S  A  W  G  S  V  S  L  G  Q  Y  C  F  K  :  H  *  I  *  S  G  *  *  V  V  C  Y  C  W  S  F  T  A  Y  K  S  F  *  L  L  F   : S  C  K  *  T  C  R  C  T  L  P  C  C  *  N  V  Y  P  I  *  A  E  L  L  E  L  E  *  V  Y  Q  E  P  H  S  *  *  *  L  *  W  N  S  N  C  M  G  C  D  D  *  T   : E  C  D  G  I  *  R  A  *  E  T  G  L  E  C  *  F  F  T  H  R  T  L  D  A  C  I  W  Q  *  *  L  *   : G  Q  S  L  V  H  E  A  G  S  K  C  S  *  Y  *  H  E  G  K  Y  M  L  C  K  I  *  S  W  I  *  C  S  Y  S   : G  W  L  C  G  S  S  Y  S  L  L  *  L  E  E  H  Q  P  A  G  S  H  F  *  W  P  *  K  S  C  F  I  C  K  I  F  V  Q  Q  *  T  C  F  S  I  N  R  Q  Y  S  T  I  V  G  C  K  R  *  F  A   : G  S  H  A  *  R  T  Y  E  *  E  E  L  C  W  S  L  S  E  Q  *  I  P  V  M  W  Q  *  N  K  *  S  I  R  V  P  *   : G  D  I  Q  T  R  D  L  A  *  I  W  F  P  R  H  R  R  S  G  *  R  C  R  I  L  F  H  Q  R  S  V  L  E  E  R  *  P  Y  D  A  S  C  *  *  P  G  N  Y  K  S  V  S  P  C  S  L  M  K  L  I  K  L  L  V  K  N  V  Q  I  F  L  V  E  K  Q  *  N  G  I  S  H  S  I  F  P  V  D  I  Y  S  T  I  K  M  A  W  F  P  P  Y  L  S  M  Y  S  S  L  K  H  V  T  Q  V  V  G  L  G  K  F  R  R  I  L  Q  V  C  V  F  F  F  H  C  A  E  G  H  R  I  Y  T  P  F  H  G  I  N  F  T  R  I  Q  C  L  H  Q  </first_frame>
            <second_frame>  L  M  N  S  Q  E  L  V  W  G  *  S  I  V  D  S  *  K  Y  P  I  C  K  N  L  F  W  V  E  G  *  L  I  L  E  K  Y  P  I  C  *  E  L  V  W  G  *  G  V  V  D  Y  *  K  I  P  N  F  A  K  K  L  F  G  V  E  G  *  L  I  I  E  K  Y  P  I  C  S  W  G  Y  R  G  R  W  W  K  V  Q  L  E  G  W  C  Q  Q  *  R  G  R  *  *  G  G  W  G  T  K  R  R  G  V  V  *  L  *  G  M  K  K  L  G  Q  *  Q  N  G  N  W  T  G  N  C  C  V  L  Y  V  C  R  S  *  R  M  H  F  *  Q  L  V  G  T  V  F  A  I  C  A  *  L  L  I  F  T  T  R  V  I  A  P  V  V  L  I  I  S  L  P  V  N  S  I  P  I  S  Y  L  T  S :   Y  *  R  R  H  L  P  V  R  F  Q  K  L  H  P  L  L  N  S  F  V  I  H  W  N  R :   Q  G  S  E  V  S  I  K  E  L  D  A  L  L  L  M  L  S  E  K  K  R  K  L  E  Q  E  E  A  E  R  N  M  Q  I  L  L  D  F  L  Q  M  L  R  K  Q  K  V  D  E  L  N  E  :  V  Q  H  D  L  Q  Y  I  K  E  D  L  N  S  V  E  R  H  R  I  D  L  Y  R  A  R  D  R  Y  S  M  K  L  R  M  L  A  D  D  P  I  G  K  K  P  W  S  S  S  T  D  R  N  F  G  G  L  F  S  T  S  R  N  A  P  G  G  L  P  T  G  N  L  T  F  K  K  V  D  S  K  A  Q  I  S  S  P  G  P  Q  R  K  D  T  S  I  S  E  L  N  S  Q  H  M  S  Q  S  G  L  A  V  V  R  K  K  R  V  N  A  Q  :  F  N  D  L  Q  E  C  Y  L  Q  K  R  R  Q  L  A  N  K  S  R  V  K  E  E  K  D  A  D  V  V  Q  R  E  G  Y  S  E  G  L  A  D  F  Q  S  V  L  S  T  F  T  R  Y  S :   R  L  R  V  I  A  E  L  R  H  G  D  L  F  H  S  A  N  I  V  S  S :   I  E  F  D  R  D  D  E  L  F  A  T  A  G  V  S  R  R  I  K  V  F  D  F  S  S  :  V  V  N  E  P  A  D  A  H  C  P  V  V  E  M  S  T  R  S  K  L  S  C  L  S  W  N  K  Y  T  K  N  H  I  A  S  S  D  Y  D  G  I  V  T  V  W  D  V  T  T  R  Q  :  S  V  M  E  Y  E  E  H  E  K  R  A  W  S  V  D  F  S  R  T  E  P  S  M  L  V  S  G  S  D  D  C  K  :  V  K  V  W  C  T  K  Q  E  A  S  V  L  N  I  D  M  K  A  N  I  C  C  V  K  Y  N  P  G  S  S  V  H  I  A  :  V  G  S  A  D  H  H  I  H  Y  Y  D  L  R  N  T  S  Q  P  V  H  I  F  S  G  H  R  K  A  V  S  Y  V  K  F  L  S  N  N  E  L  A  S  A  S  T  D  S  T  L  R  L  W  D  V  K  D  N  L  P  :  V  R  T  L  R  G  H  T  N  E  K  N  F  V  G  L  S  V  N  N  E  F  L  S  C  G  S  E  T  N  E  V  F  V  Y  H  K  :  A  I  S  K  P  V  T  W  H  R  F  G  S  P  D  I  D  E  A  D  E  D  A  G  S  Y  F  I  S  A  V  C  W  K  S  D  S  P  T  M  L  A  A  N  S  Q  G  T  I  K  V  L  V  L  A  A  *  *  S  *  *  S  Y  *  L  R  M  F  K  S  F  *  W  K  N  S  E  M  E  F  H  I  Q  F  F  L  *  I  S  I  Q  P  S  R  W  H  G  S  P  H  I  C  Q  C  I  H  H  *  N  M  *  H  K  L  *  G  L  V  N  L  E  E  F  Y  K  F  V  F  F  F  F  I  V  L  K  D  I  G  F  T  H  H  F  M  E  *  T  L  L  V  F  S  V  Y  T  K </second_frame>
            <third_frame>   *  *  T  V  K  N  L  F  G  V  E  V  *  L  I  L  E  N  T  Q  F  A  K  T  C  F  G  L  R  G  S  *  F  L  K  N  T  Q  F  A  K  N  L  F  G  V  E  G  *  L  I  I  E  K  Y  P  I  L  L  K  S  C  L  G  L  R  G  S  *  L  L  K  N  T  Q  F  A  V  G  G  I  E  G  D  G  G  K  F  S  W  R  G  G  A  S  S  E  G  G  G  D  E  E  D  G  G  Q  R  G  G  G  *  C  N  S  K  G  *  R  S  W  D  S  D  R  M  G  I  G  Q  G  I  V  V  S  Y  M  Y  A  D  H  K  G  C  I  F  N  S  L  W  A  Q  F  L  L  Y  V  H  S  Y  S  S  S  Q  Q  E  *  L  P  L  L  F  S  L  S  H  Y  Q  S  T  L  S  Q  F  P  T  *  Q   : A  I  E  E  D  I  C  P  S  D  F  K  N  C  I  P  C  *  T  V  S  S  F  I  G  T   : D  R  V  L  K  C  Q  L  R  S  W  T  L  Y  C  *  C  C  Q  R  K  R  G  N  W  N  R  R  K  Q  S  E  I  C  K  F  C  *  T  S  Y  R  C  *  G  S  K  K  L  M  N  S  M  R :   C  N  M  I  C  N  T  S  K  R  T  *  I  Q  *  R  D  I  E  *  T  Y  T  G  L  G  T  G  I  Q  *  S  S  E  C  *  Q  M  I  L  L  G  K  N  L  G  L  H  Q  L  I  G  T  L  V  V  F  S  P  L  H  E  M  H  L  E  D  Y  R  L  E  T  *  H  S  K  R  W  T  A  K  L  K  *  A  L  L  D  H  R  E  K  I  L  Q  S  V  N  *  T  H  N  I  *  V  N  Q  V  W  L  W  L  G  R  S  V  S  M  H  S :   S  M  I  S  K  N  V  T  C  K  R  D  V  N  W  Q  T  N  R  E  L  R  K  K  R  M  Q  M  S  Y  K  E  K  V  T  V  K  D  *  Q  I  F  S  L  Y  L  A  L  S  L  V  I   : V  G  *  E  S  L  L  N  F  G  M  G  I  C  F  T  R  P  I  L  F  Q   : A  L  N  L  I  G  M  M  S  C  L  L  L  L  E  F  H  G  V  *  K  F  L  T  S  L  Q :   L  *  M  N  L  Q  M  H  T  A  L  L  L  K  C  L  P  D  L  S  *  A  A  *  V  G  I  S  I  P  R  T  T  *  L  V  V  I  M  M  E  *  *  L  Y  G  M  *  R  L  D  R :   V  *  W  N  M  K  S  M  R  N  G  L  G  V  L  I  F  H  A  Q  N  P  R  C  L  Y  L  A  V  M  I  V  R :   S  K  F  G  A  R  S  R  K  Q  V  F  L  I  L  T  *  R  Q  I  Y  A  V  *  N  I  I  L  D  L  V  F  I  *  R :   L  A  L  R  I  I  I  F  I  I  M  T  *  G  T  P  A  S  R  F  T  F  L  V  A  I  E  K  L  F  H  M  *  N  F  C  P  T  M  N  L  L  Q  H  Q  Q  T  V  L  Y  D  C  G  M  *  K  I  I  C  R :   F  A  R  L  E  D  I  R  M  R  R  T  L  L  V  S  Q  *  T  M  N  S  C  H  V  A  V  K  Q  M  K  Y  S  C  T  I  R :   R  Y  P  N  P  *  L  G  I  D  L  V  P  Q  T  *  T  K  R  M  K  M  Q  D  L  I  S  S  A  Q  C  A  G  R  A  I  A  L  R  C  *  L  L  I  A  R  E  L  *  K  C  *  S  L  Q  L  D  E  V  N  K  A  T  S  *  E  C  S  N  L  F  S  G  K  T  V  K  W  N  F  T  F  N  F  S  C  R  Y  L  F  N  H  Q  D  G  M  V  P  P  I  F  V  N  V  F  I  I  K  T  C  N  T  S  C  R  A  W  *  I  *  K  N  F  T  S  L  C  F  F  F  S  L  C  *  R  T  S  D  L  H  T  I  S  W  N  K  L  Y  S  Y  S  V  F  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141526" stop="141596"/>
                    <exon start="143586" stop="143745"/>
                    <exon start="144076" stop="144435"/>
                    <exon start="145262" stop="145419"/>
                    <exon start="145559" stop="145624"/>
                    <exon start="145983" stop="146061"/>
                    <exon start="147327" stop="147482"/>
                    <exon start="147567" stop="147665"/>
                    <exon start="148093" stop="148197"/>
                    <exon start="148768" stop="148947"/>
                    <exon start="149099" stop="149209"/>
                    <exon start="149438" stop="149608"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1713</number_coding_nucleotides>
                  <number_encoded_amino_acids>571</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRHLPVRFQKLHPLLNSFVIHWNRQGSEVSIKELDALLLMLSEKKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQHDLQYIKEDLNSVERHRIDLYRARDRYSMKLRMLADDPIGKKPWSSSTDRNFGGLFSTSRNAPGGLPTGNLTFKKVDSKAQISSPGPQRKDTSISELNSQHMSQSGLAVVRKKRVNAQFNDLQECYLQKRRQLANKSRVKEEKDADVVQREGYSEGLADFQSVLSTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADAHCPVVEMSTRSKLSCLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSVHIAVGSADHHIHYYDLRNTSQPVHIFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTLRGHTNEKNFVGLSVNNEFLSCGSETNEVFVYHKAISKPVTWHRFGSPDIDEADEDAGSYFISAVCWKSDSPTMLAANSQGTIKVLVLAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149668" stop="149904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGISHSIFPVDIYSTIKMAWFPPYLSMYSSLKHVTQVVGLGKFRRILQVCVFFFHCAEGHRIYTPFHGINFTRIQCLHQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="138576" e_stop="138760"/>
            <exon e_start="139420" e_stop="139960"/>
            <exon e_start="141519" e_stop="141596"/>
            <exon e_start="143586" e_stop="143631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.526" e_score="0.989"/>
          <exon-intron don_prob="0.884" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.756" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="138576" e_stop="138760" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.526">
            <gDNA_intron_boundary i_start="138761" i_stop="139419" i_length="659"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="139420" e_stop="139960" e_length="541"/>
          </exon>
          <intron i_serial="2" don_prob="0.884" acc_prob="0.936">
            <gDNA_intron_boundary i_start="139961" i_stop="141518" i_length="1558"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="141519" e_stop="141596" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.756">
            <gDNA_intron_boundary i_start="141597" i_stop="143585" i_length="1989"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143586" e_stop="143631" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138576" stop="138760"/>
              <exon start="139420" stop="139960"/>
              <exon start="141519" stop="141596"/>
              <exon start="143586" stop="143631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG : TAATTGGTTTAATCATAGAAGTCATCAAGAAGATGCAGAGGTATACAAATAGAGAGCAAGGTTACATTGTAGCTTCAAAAAGCAAATGTGAGACCTTATTAGCTACATTACAGGAGCACTATCTTAGGTACAGAGAGTTAACAATTGATTTGATGGGGGGCATATATGCCCAACTAAAGAAAGTAGACATTTTGCTTTAAGGGAGTGGCTGACAGTTGATTTTCCTTCAAAGCATCTACTGTTTCTTTCATTCCATAACCATTCTTCAAATTGATTTGATGGACGTGTCAACTTCCCAACTGCCCCAGGTTTCAAAAGCCTCATTGGTACTGTTTGGCATAACCCAACTAATTCCAAAAAGAGAACAGAACATGCTCGAAAAATTTGTTGCAACTAGACAGTACAGAAATCGGTGATTGTTGATCTCTTAACTCCCTGTGACACATATGGCATCTGTTGACCATCTGAATTTCATAAGGTTGTCCTGAGTCAAACATTTCTAATAGAGTACAGTCCATCTGAAACAGAATATTTTTTGGAG : CTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG : ACAGGGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTG</gDNA_template>
            <first_frame> N  W  T  G  N  C  C  V  L  Y  V  C  R  S  *  R  M  H  F  *  Q  L  V  G  T  V  F  A  I  C  A  *  L  L  I  F  T  T  R  V  I  A  P  V  V  L  I  I  S  L  P  V  N  S  I  P  I  S  Y  L  T  S :   N  W  F  N  H  R  S  H  Q  E  D  A  E  V  Y  K  *  R  A  R  L  H  C  S  F  K  K  Q  M  *  D  L  I  S  Y  I  T  G  A  L  S  *  V  Q  R  V  N  N  *  F  D  G  G  H  I  C  P  T  K  E  S  R  H  F  A  L  R  E  W  L  T  V  D  F  P  S  K  H  L  L  F  L  S  F  H  N  H  S  S  N  *  F  D  G  R  V  N  F  P  T  A  P  G  F  K  S  L  I  G  T  V  W  H  N  P  T  N  S  K  K  R  T  E  H  A  R  K  I  C  C  N  *  T  V  Q  K  S  V  I  V  D  L  L  T  P  C  D  T  Y  G  I  C  *  P  S  E  F  H  K  V  V  L  S  Q  T  F  L  I  E  Y  S  P  S  E  T  E  Y  F  L  E  :  L  L  K  K  T  S  A  R  Q  I  S  K  T  A  S  P  V  E  Q  F  R  H  S  L  E  Q  :  T  G  F  *  S  V  N  *  G  A  G  R  S  I  V  </first_frame>
            <second_frame>  I  G  Q  G  I  V  V  S  Y  M  Y  A  D  H  K  G  C  I  F  N  S  L  W  A  Q  F  L  L  Y  V  H  S  Y  S  S  S  Q  Q  E  *  L  P  L  L  F  S  L  S  H  Y  Q  S  T  L  S  Q  F  P  T  *  Q   : V  I  G  L  I  I  E  V  I  K  K  M  Q  R  Y  T  N  R  E  Q  G  Y  I  V  A  S  K  S  K  C  E  T  L  L  A  T  L  Q  E  H  Y  L  R  Y  R  E  L  T  I  D  L  M  G  G  I  Y  A  Q  L  K  K  V  D  I  L  L  *  G  S  G  *  Q  L  I  F  L  Q  S  I  Y  C  F  F  H  S  I  T  I  L  Q  I  D  L  M  D  V  S  T  S  Q  L  P  Q  V  S  K  A  S  L  V  L  F  G  I  T  Q  L  I  P  K  R  E  Q  N  M  L  E  K  F  V  A  T  R  Q  Y  R  N  R  *  L  L  I  S  *  L  P  V  T  H  M  A  S  V  D  H  L  N  F  I  R  L  S  *  V  K  H  F  *  *  S  T  V  H  L  K  Q  N  I  F  W  S :   Y  *  R  R  H  L  P  V  R  F  Q  K  L  H  P  L  L  N  S  F  V  I  H  W  N  R :   Q  G  S  E  V  S  I  K  E  L  D  A  L  L  L </second_frame>
            <third_frame>   L  D  R  E  L  L  C  P  I  C  M  Q  I  I  K  D  A  F  L  T  A  C  G  H  S  F  C  Y  M  C  I  V  T  H  L  H  N  K  S  D  C  P  C  C  S  H  Y  L  T  T  S  Q  L  Y  P  N  F  L  L  D  K  :  *  L  V  *  S  *  K  S  S  R  R  C  R  G  I  Q  I  E  S  K  V  T  L  *  L  Q  K  A  N  V  R  P  Y  *  L  H  Y  R  S  T  I  L  G  T  E  S  *  Q  L  I  *  W  G  A  Y  M  P  N  *  R  K  *  T  F  C  F  K  G  V  A  D  S  *  F  S  F  K  A  S  T  V  S  F  I  P  *  P  F  F  K  L  I  *  W  T  C  Q  L  P  N  C  P  R  F  Q  K  P  H  W  Y  C  L  A  *  P  N  *  F  Q  K  E  N  R  T  C  S  K  N  L  L  Q  L  D  S  T  E  I  G  D  C  *  S  L  N  S  L  *  H  I  W  H  L  L  T  I  *  I  S  *  G  C  P  E  S  N  I  S  N  R  V  Q  S  I  *  N  R  I  F  F  G   : A  I  E  E  D  I  C  P  S  D  F  K  N  C  I  P  C  *  T  V  S  S  F  I  G  T   : D  R  V  L  K  C  Q  L  R  S  W  T  L  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138757" stop="138760"/>
                    <exon start="139420" stop="139619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVIGLIIEVIKKMQRYTNREQGYIVASKSKCETLLATLQEHYLRYRELTIDLMGGIYAQLKKVDILL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139632" stop="139835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLIFLQSIYCFFHSITILQIDLMDVSTSQLPQVSKASLVLFGITQLIPKREQNMLEKFVATRQYRNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="138546" e_stop="138760"/>
            <exon e_start="141483" e_stop="141596"/>
            <exon e_start="143590" e_stop="143745"/>
            <exon e_start="144076" e_stop="144174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.923" e_score="0.949"/>
          <exon-intron don_prob="0.964" acc_prob="0.863" e_score="0.982"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="0.949"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="138546" e_stop="138760" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.923">
            <gDNA_intron_boundary i_start="138761" i_stop="141482" i_length="2722"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="141483" e_stop="141596" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.863">
            <gDNA_intron_boundary i_start="141597" i_stop="143589" i_length="1993"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="143590" e_stop="143745" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="143746" i_stop="144075" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.919">
            <gDNA_exon_boundary e_start="144076" e_stop="144174" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138546" stop="138760"/>
              <exon start="141483" stop="141596"/>
              <exon start="143590" stop="143745"/>
              <exon start="144076" stop="144174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGAAGTTGGGACAGTGACAGAATGGGAATTGGACAGGGAATTGTTGTGTCCTATATGTATGCAGATCATAAAGGATGCATTTTTAACAGCTTGTGGGCACAGTTTTTGCTATATGTGCATAGTTACTCATCTTCACAACAAGAGTGATTGCCCCTGTTGTTCTCATTATCTCACTACCAGTCAACTCTATCCCAATTTCCTACTTGACAAG : CTTATTGTTAAAGGTTTCTCTGTACCACCTTTGTAGCTATTGAAGAAGACATCTGCCCGTCAGATTTCAAAAACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAG : GGTTCTGAAGTGTCAATTAAGGAGCTGGACGCTCTATTGTTGATGTTGTCAGAGAAAAAGAGGAAATTGGAACAGGAGGAAGCAGAGCGAAATATGCAAATTCTGCTAGACTTCTTACAGATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAG : GTGCAACATGATCTGCAATACATCAAAGAGGACTTAAATTCAGTAGAGAGACATAGAATAGACCTATACCGGGCTAGGGACCGGTATTCAATGAAGCTC</gDNA_template>
            <first_frame> M  K  K  L  G  Q  *  Q  N  G  N  W  T  G  N  C  C  V  L  Y  V  C  R  S  *  R  M  H  F  *  Q  L  V  G  T  V  F  A  I  C  A  *  L  L  I  F  T  T  R  V  I  A  P  V  V  L  I  I  S  L  P  V  N  S  I  P  I  S  Y  L  T  S :   L  L  L  K  V  S  L  Y  H  L  C  S  Y  *  R  R  H  L  P  V  R  F  Q  K  L  H  P  L  L  N  S  F  V  I  H  W  N  R :   V  L  K  C  Q  L  R  S  W  T  L  Y  C  *  C  C  Q  R  K  R  G  N  W  N  R  R  K  Q  S  E  I  C  K  F  C  *  T  S  Y  R  C  *  G  S  K  K  L  M  N  S  M  R :   C  N  M  I  C  N  T  S  K  R  T  *  I  Q  *  R  D  I  E  *  T  Y  T  G  L  G  T  G  I  Q  *  S   </first_frame>
            <second_frame>  *  R  S  W  D  S  D  R  M  G  I  G  Q  G  I  V  V  S  Y  M  Y  A  D  H  K  G  C  I  F  N  S  L  W  A  Q  F  L  L  Y  V  H  S  Y  S  S  S  Q  Q  E  *  L  P  L  L  F  S  L  S  H  Y  Q  S  T  L  S  Q  F  P  T  *  Q   : A  Y  C  *  R  F  L  C  T  T  F  V  A  I  E  E  D  I  C  P  S  D  F  K  N  C  I  P  C  *  T  V  S  S  F  I  G  T   : G  F  *  S  V  N  *  G  A  G  R  S  I  V  D  V  V  R  E  K  E  E  I  G  T  G  G  S  R  A  K  Y  A  N  S  A  R  L  L  T  D  V  K  E  A  K  S  *  *  T  Q  *   : G  A  T  *  S  A  I  H  Q  R  G  L  K  F  S  R  E  T  *  N  R  P  I  P  G  *  G  P  V  F  N  E  A  </second_frame>
            <third_frame>   E  E  V  G  T  V  T  E  W  E  L  D  R  E  L  L  C  P  I  C  M  Q  I  I  K  D  A  F  L  T  A  C  G  H  S  F  C  Y  M  C  I  V  T  H  L  H  N  K  S  D  C  P  C  C  S  H  Y  L  T  T  S  Q  L  Y  P  N  F  L  L  D  K  :  L  I  V  K  G  F  S  V  P  P  L  *  L  L  K  K  T  S  A  R  Q  I  S  K  T  A  S  P  V  E  Q  F  R  H  S  L  E  Q  :  G  S  E  V  S  I  K  E  L  D  A  L  L  L  M  L  S  E  K  K  R  K  L  E  Q  E  E  A  E  R  N  M  Q  I  L  L  D  F  L  Q  M  L  R  K  Q  K  V  D  E  L  N  E  :  V  Q  H  D  L  Q  Y  I  K  E  D  L  N  S  V  E  R  H  R  I  D  L  Y  R  A  R  D  R  Y  S  M  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141519" stop="141596"/>
                    <exon start="143590" stop="143745"/>
                    <exon start="144076" stop="144174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKKTSARQISKTASPVEQFRHSLEQGSEVSIKELDALLLMLSEKKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQHDLQYIKEDLNSVERHRIDLYRARDRYSMKL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138548" stop="138760"/>
                    <exon start="141483" stop="141518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEVGTVTEWELDRELLCPICMQIIKDAFLTACGHSFCYMCIVTHLHNKSDCPCCSHYLTTSQLYPNFLLDKLIVKGFSVPPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="159637" PGL_stop="162469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159637" e_stop="159850"/>
            <exon e_start="160186" e_stop="160412"/>
            <exon e_start="161239" e_stop="161572"/>
            <exon e_start="161971" e_stop="162469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="159637" e_stop="159850" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="159851" i_stop="160185" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="160186" e_stop="160412" e_length="227"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="160413" i_stop="161238" i_length="826"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="161239" e_stop="161572" e_length="334"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="161573" i_stop="161970" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="161971" e_stop="162469" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159637" stop="159850"/>
              <exon start="160186" stop="160412"/>
              <exon start="161239" stop="161572"/>
              <exon start="161971" stop="162469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAAAAGAAAACTCACTTTCAATATCTTCCATCTTTTTATTCCACACACTATTTACTCTAAAAAAGAAAAAAAAAACATTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAG : TTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAG : GGAAGTTATGAGGGATTTTGCTAAAAGATTAGAGAAGTTAGCAGAAGAACTCTTGGATTTGCTTTGTGAAAACCTTGGACTAGAAAAAAGTTACTTGAAAAATACATTTTATGGCTCAAAAGGTCCAAATTTTGGGACTAAAGTAAGTAACTATCCACCATGTCCAAAACCTGATCTAATAAAGGGGTTGCGTGCACATACTGATGCTGGTGGCATAATACTTCTCTTCCAAGATGACAAGGTGAGTGGCCTACAACTCCTCAAAGACGGTCGATGGATCGATGTTCCTCCCATGCGCCACTCCATCGTGGTTAACCTAGGTGACCAACTCGAG : GTAATCACGAACGGGAAGTACAAGAGTGTGATGCATAGAGTGATCGCACAAAAAGACGGGACTCGGATGTCATTAGCATCCTTCTACAATCCAGGAAATGATGCATTGATCTATCCAGCACCAGCTCTAGTTGATAAAGAGGCAGAGGAACATAACAAACAAGTTTACCCTAAATTTATGTTTGATGATTACATGAAATTATATGCTAATCTCAAATTTCAAGCCAAAGAGCCAAGATTTGAAGCCATGAAAGCTATGGAAAGTGATCCAATTGCAATTGCTTAGATTAAAAATTAAAAAAATTGGAAGAAAAATTATTTGTTATTGACATACATTATTTGTATTTTTTTTTGAAGTATAGTGGAATTTATATATTTTTATTACAAAGTGTGCGTCCCTACTACATGTGTGGTAAAGAGGACTAAAGTTTGTATCTTACACATATTTTAATACCCAAAAATGAGATGTGTTTCTGTTTTTCTAATTAGTTTTTCCTTAA</gDNA_template>
            <first_frame> Q  K  K  K  T  H  F  Q  Y  L  P  S  F  Y  S  T  H  Y  L  L  *  K  R  K  K  K  H  F  L  L  F  L  Q  E  I  K  N  G  E  F  P  N  Y  Q  L  G  K  T  Q  W  C  *  E  S  S  H  N  G  K  D  *  *  C  L  *  K  L  G  L  L  *   : V  G  E  P  W  N  S  T  *  S  D  G  H  C  G  E  I  N  K  G  T  L  Q  E  V  Y  G  T  K  I  *  R  I  G  C  *  E  R  T  *  R  C  *  S  *  G  Y  *  Y  G  L  G  K  Y  F  F  L  E  A  S  P  F  F  *  Y  L  S  T  T  *  S  *  *  C  I  *  :  G  S  Y  E  G  F  C  *  K  I  R  E  V  S  R  R  T  L  G  F  A  L  *  K  P  W  T  R  K  K  L  L  E  K  Y  I  L  W  L  K  R  S  K  F  W  D  *  S  K  *  L  S  T  M  S  K  T  *  S  N  K  G  V  A  C  T  Y  *  C  W  W  H  N  T  S  L  P  R  *  Q  G  E  W  P  T  T  P  Q  R  R  S  M  D  R  C  S  S  H  A  P  L  H  R  G  *  P  R  *  P  T  R   : G  N  H  E  R  E  V  Q  E  C  D  A  *  S  D  R  T  K  R  R  D  S  D  V  I  S  I  L  L  Q  S  R  K  *  C  I  D  L  S  S  T  S  S  S  *  *  R  G  R  G  T  *  Q  T  S  L  P  *  I  Y  V  *  *  L  H  E  I  I  C  *  S  Q  I  S  S  Q  R  A  K  I  *  S  H  E  S  Y  G  K  *  S  N  C  N  C  L  D  *  K  L  K  K  L  E  E  K  L  F  V  I  D  I  H  Y  L  Y  F  F  L  K  Y  S  G  I  Y  I  F  L  L  Q  S  V  R  P  Y  Y  M  C  G  K  E  D  *  S  L  Y  L  T  H  I  L  I  P  K  N  E  M  C  F  C  F  S  N  *  F  F  L   </first_frame>
            <second_frame>  K  K  R  K  L  T  F  N  I  F  H  L  F  I  P  H  T  I  Y  S  K  K  E  K  K  N  I  F  F  Y  F  F  K  K  L  K  M  E  N  F  P  I  I  N  L  E  K  L  N  G  A  E  R  V  A  T  M  E  K  I  N  D  A  C  E  N  W  G  F  F  E  :  L  V  N  H  G  I  P  H  E  V  M  D  T  V  E  K  L  T  K  G  H  Y  K  K  C  M  E  Q  R  F  K  E  L  V  A  K  K  G  L  E  G  V  E  V  E  V  T  D  M  D  W  E  S  T  F  F  L  R  H  L  P  S  S  N  I  S  Q  L  P  D  L  D  D  V  Y  R :   E  V  M  R  D  F  A  K  R  L  E  K  L  A  E  E  L  L  D  L  L  C  E  N  L  G  L  E  K  S  Y  L  K  N  T  F  Y  G  S  K  G  P  N  F  G  T  K  V  S  N  Y  P  P  C  P  K  P  D  L  I  K  G  L  R  A  H  T  D  A  G  G  I  I  L  L  F  Q  D  D  K  V  S  G  L  Q  L  L  K  D  G  R  W  I  D  V  P  P  M  R  H  S  I  V  V  N  L  G  D  Q  L  E  :  V  I  T  N  G  K  Y  K  S  V  M  H  R  V  I  A  Q  K  D  G  T  R  M  S  L  A  S  F  Y  N  P  G  N  D  A  L  I  Y  P  A  P  A  L  V  D  K  E  A  E  E  H  N  K  Q  V  Y  P  K  F  M  F  D  D  Y  M  K  L  Y  A  N  L  K  F  Q  A  K  E  P  R  F  E  A  M  K  A  M  E  S  D  P  I  A  I  A  *  I  K  N  *  K  N  W  K  K  N  Y  L  L  L  T  Y  I  I  C  I  F  F  *  S  I  V  E  F  I  Y  F  Y  Y  K  V  C  V  P  T  T  C  V  V  K  R  T  K  V  C  I  L  H  I  F  *  Y  P  K  M  R  C  V  S  V  F  L  I  S  F  S  L  </second_frame>
            <third_frame>   K  K  E  N  S  L  S  I  S  S  I  F  L  F  H  T  L  F  T  L  K  K  K  K  K  T  F  S  S  I  S  S  R  N  *  K  W  R  I  S  Q  L  S  T  W  K  N  S  M  V  L  R  E  *  P  Q  W  K  R  L  M  M  L  V  K  I  G  A  S  L  S :   W  *  T  M  E  F  H  M  K  *  W  T  L  W  R  N  *  Q  R  D  I  T  R  S  V  W  N  K  D  L  K  N  W  L  L  R  K  D  L  K  V  L  K  L  R  L  L  I  W  I  G  K  V  L  F  S  *  G  I  S  L  L  L  I  S  L  N  Y  L  I  L  M  M  Y  I   : G  K  L  *  G  I  L  L  K  D  *  R  S  *  Q  K  N  S  W  I  C  F  V  K  T  L  D  *  K  K  V  T  *  K  I  H  F  M  A  Q  K  V  Q  I  L  G  L  K  *  V  T  I  H  H  V  Q  N  L  I  *  *  R  G  C  V  H  I  L  M  L  V  A  *  Y  F  S  S  K  M  T  R  *  V  A  Y  N  S  S  K  T  V  D  G  S  M  F  L  P  C  A  T  P  S  W  L  T  *  V  T  N  S  R :   *  S  R  T  G  S  T  R  V  *  C  I  E  *  S  H  K  K  T  G  L  G  C  H  *  H  P  S  T  I  Q  E  M  M  H  *  S  I  Q  H  Q  L  *  L  I  K  R  Q  R  N  I  T  N  K  F  T  L  N  L  C  L  M  I  T  *  N  Y  M  L  I  S  N  F  K  P  K  S  Q  D  L  K  P  *  K  L  W  K  V  I  Q  L  Q  L  L  R  L  K  I  K  K  I  G  R  K  I  I  C  Y  *  H  T  L  F  V  F  F  F  E  V  *  W  N  L  Y  I  F  I  T  K  C  A  S  L  L  H  V  W  *  R  G  L  K  F  V  S  Y  T  Y  F  N  T  Q  K  *  D  V  F  L  F  F  *  L  V  F  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159638" stop="159850"/>
                    <exon start="160186" stop="160412"/>
                    <exon start="161239" stop="161572"/>
                    <exon start="161971" stop="162255"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRKLTFNIFHLFIPHTIYSKKEKKNIFFYFFKKLKMENFPIINLEKLNGAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYREVMRDFAKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGRWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGTRMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDYMKLYANLKFQAKEPRFEAMKAMESDPIAIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="159717" e_stop="159850"/>
            <exon e_start="160186" e_stop="160772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="159717" e_stop="159850" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="159851" i_stop="160185" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="160186" e_stop="160772" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159717" stop="159850"/>
              <exon start="160186" stop="160772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCTATTTCTTCAAGAAATTAAAAATGGAGAATTTCCCAATTATCAACTTGGAAAAACTCAATGGTGCTGAGAGAGTAGCCACAATGGAAAAGATTAATGATGCTTGTGAAAATTGGGGCTTCTTTGAG : TTGGTGAACCATGGAATTCCACATGAAGTGATGGACACTGTGGAGAAATTAACAAAGGGACATTACAAGAAGTGTATGGAACAAAGATTTAAAGAATTGGTTGCTAAGAAAGGACTTGAAGGTGTTGAAGTTGAGGTTACTGATATGGATTGGGAAAGTACTTTTTTCTTGAGGCATCTCCCTTCTTCTAATATCTCTCAACTACCTGATCTTGATGATGTATATAGGTAAACTTCGCAATCTCACGTTACGTGATTTTTTTTCATCTGTCTAAGTTTTGATCGATGGTGGAGCCACGTATAAGAAAAGGGAACTCAATTGAATAACCTTCGCCAGAAAATTATAAAAACAAACTTTCGCGTATGTATTATAAAATCTTGAAATTTTTTTTATAACATACTAGTAATATATAGGTTTAAATCTCAAGTTAATATTTTTCTAAACCTCGTATTAAAATTTATGTCTGTATCATTATCTAGATTGATAAAAGACAAATTAATACGATTATATTTTATTATAAAAGTAACATGATTTATAAGTGATAAGTGTCCAAACTTTGCCAGCCTTGATTGACCAAGATCCCAAAT</gDNA_template>
            <first_frame> F  S  S  I  S  S  R  N  *  K  W  R  I  S  Q  L  S  T  W  K  N  S  M  V  L  R  E  *  P  Q  W  K  R  L  M  M  L  V  K  I  G  A  S  L  S :   W  *  T  M  E  F  H  M  K  *  W  T  L  W  R  N  *  Q  R  D  I  T  R  S  V  W  N  K  D  L  K  N  W  L  L  R  K  D  L  K  V  L  K  L  R  L  L  I  W  I  G  K  V  L  F  S  *  G  I  S  L  L  L  I  S  L  N  Y  L  I  L  M  M  Y  I  G  K  L  R  N  L  T  L  R  D  F  F  S  S  V  *  V  L  I  D  G  G  A  T  Y  K  K  R  E  L  N  *  I  T  F  A  R  K  L  *  K  Q  T  F  A  Y  V  L  *  N  L  E  I  F  F  I  T  Y  *  *  Y  I  G  L  N  L  K  L  I  F  F  *  T  S  Y  *  N  L  C  L  Y  H  Y  L  D  *  *  K  T  N  *  Y  D  Y  I  L  L  *  K  *  H  D  L  *  V  I  S  V  Q  T  L  P  A  L  I  D  Q  D  P  K  </first_frame>
            <second_frame>  F  L  L  F  L  Q  E  I  K  N  G  E  F  P  N  Y  Q  L  G  K  T  Q  W  C  *  E  S  S  H  N  G  K  D  *  *  C  L  *  K  L  G  L  L  *   : V  G  E  P  W  N  S  T  *  S  D  G  H  C  G  E  I  N  K  G  T  L  Q  E  V  Y  G  T  K  I  *  R  I  G  C  *  E  R  T  *  R  C  *  S  *  G  Y  *  Y  G  L  G  K  Y  F  F  L  E  A  S  P  F  F  *  Y  L  S  T  T  *  S  *  *  C  I  *  V  N  F  A  I  S  R  Y  V  I  F  F  H  L  S  K  F  *  S  M  V  E  P  R  I  R  K  G  N  S  I  E  *  P  S  P  E  N  Y  K  N  K  L  S  R  M  Y  Y  K  I  L  K  F  F  L  *  H  T  S  N  I  *  V  *  I  S  S  *  Y  F  S  K  P  R  I  K  I  Y  V  C  I  I  I  *  I  D  K  R  Q  I  N  T  I  I  F  Y  Y  K  S  N  M  I  Y  K  *  *  V  S  K  L  C  Q  P  *  L  T  K  I  P  N </second_frame>
            <third_frame>   F  F  Y  F  F  K  K  L  K  M  E  N  F  P  I  I  N  L  E  K  L  N  G  A  E  R  V  A  T  M  E  K  I  N  D  A  C  E  N  W  G  F  F  E  :  L  V  N  H  G  I  P  H  E  V  M  D  T  V  E  K  L  T  K  G  H  Y  K  K  C  M  E  Q  R  F  K  E  L  V  A  K  K  G  L  E  G  V  E  V  E  V  T  D  M  D  W  E  S  T  F  F  L  R  H  L  P  S  S  N  I  S  Q  L  P  D  L  D  D  V  Y  R  *  T  S  Q  S  H  V  T  *  F  F  F  I  C  L  S  F  D  R  W  W  S  H  V  *  E  K  G  T  Q  L  N  N  L  R  Q  K  I  I  K  T  N  F  R  V  C  I  I  K  S  *  N  F  F  Y  N  I  L  V  I  Y  R  F  K  S  Q  V  N  I  F  L  N  L  V  L  K  F  M  S  V  S  L  S  R  L  I  K  D  K  L  I  R  L  Y  F  I  I  K  V  T  *  F  I  S  D  K  C  P  N  F  A  S  L  D  *  P  R  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159719" stop="159850"/>
                    <exon start="160186" stop="160416"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFYFFKKLKMENFPIINLEKLNGAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="166124" PGL_stop="171893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="166124" e_stop="166995"/>
            <exon e_start="167894" e_stop="168010"/>
            <exon e_start="170401" e_stop="170579"/>
            <exon e_start="170674" e_stop="170767"/>
            <exon e_start="170898" e_stop="170975"/>
            <exon e_start="171107" e_stop="171208"/>
            <exon e_start="171532" e_stop="171893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.986" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.346" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="166124" e_stop="166995" e_length="872"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="166996" i_stop="167893" i_length="898"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="167894" e_stop="168010" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.907">
            <gDNA_intron_boundary i_start="168011" i_stop="170400" i_length="2390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="170401" e_stop="170579" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="170580" i_stop="170673" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="170674" e_stop="170767" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.956">
            <gDNA_intron_boundary i_start="170768" i_stop="170897" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="170898" e_stop="170975" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.944">
            <gDNA_intron_boundary i_start="170976" i_stop="171106" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="171107" e_stop="171208" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.346">
            <gDNA_intron_boundary i_start="171209" i_stop="171531" i_length="323"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="171532" e_stop="171893" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166124" stop="166995"/>
              <exon start="167894" stop="168010"/>
              <exon start="170401" stop="170579"/>
              <exon start="170674" stop="170767"/>
              <exon start="170898" stop="170975"/>
              <exon start="171107" stop="171208"/>
              <exon start="171532" stop="171893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCATTTTGTCTGTGTCCCTCATGTTCCTTTTCACCTTGTCAAGAGGTTAATTTTATTGTTTCTATATTCTTTTTGAGGGTTGTGTGATATATCTTTATGTTAATCCACATTTTATTAGTTTATTTCTGCAATTTTTTGCCAAAAAAATGACCTTTCTTTTGAATTTTTGGATGCCCATTTGTTAAAAAAGCTCAATTTTTGCTATTTAATGGTAAAAATTTGGCCTTTCTTTGAATTATTGGATACCCCATGTGTAAAAAAGCTCAATTTTTGCAATTTAATGCTAAAAATTTGACCTTTCTTTGAATTCTTGGATACCTATATGTAAAAAGATTCAATTTTTATACTTTTATGTTAAAGTTGAGAGCTTGTTTTGTGTAAAATCCAAAAAAATGTATGGAACCCATAGCAAGAGAGACATGGAGATTGAATATCAATCTCAAGTTCCAATTTTGAGGCCAAGTATACATGCCAGAAGGGCAAAGATTACTGTGAAATTTCAAGATCTGTATGGATTTACTGTTGAAGGGAATGTTGATGATGTTAATGTGTTGAATGAGGTTAGGGAGAAAGTTAGGGAACAAGGGAAAGTTTGGTGGTCATTAGAAGCTAGCAAAGGTGCTAATTGGTATTTGCAAACTCATGTTTCCTCAACCCTTAAAACATCCCTCAAATTCTCTGCTTTGGTGAATGCAATTACTCTCAAGAAGCTCATTAGAAAAGGAATTCCACCTGTTTTGAGGCCTAAGGTGTGGTTTTCACTATCAGGAGCTGCTAAGAAGAAATCGACTGCCCCGGATAGTTATTATGAGGATTTGACAAAGGCTGTACAGGATAAGGTCACACCTGCAACCAAGCAGATTGATCAT : GACCTTCCACGAACCTTTCCTGGTCACCCCTGGTTGGACACTGCTGAGGGTCATGCTGCCCTTAGGCGGGTCCTTGTTGCCTATTCTTTCCGTGATTCTGATGTTGGCTACTGCCAG : GGATTAAACTATGTTGCAGCATTATTATTGCTGGTGATGAAAACCGAAGAAGAGGCTTTCTGGATGATTGCTGTCCTTCTAGAGAATGTGTTAGTCACCGACTGTTATAATAAGAACTTATCTGGATGTCATGTTGAACAAAGAGTGTTCAAGGATCTATTAACCAAAAAATGTCCAAG : GATAGCCGCTCATTTGGAGGCACTGGAGTTCGACGTTTCTCTTGTTTGCACCGAATGGTTTCTCTGCCTTTTCGCCAAAAGCTTGCCTTCTGAG : ACAACCTTGCGGGTCTGGGACGTCCTTTTCAATGAAGGTGCAAATCTTCTATTTCATGTGGCATTGGCAATTTTTAAG : ATGAACGAAGAAGAGTTGCTGACGGTGCATCATGTTGGGGATGTAATTCATATAATCCAGAGATGCACACATCAACTTTTTGATCCTGATGACTTGTTGACG : GTTGCTTTTGATCAAATTGGTTTTATGACTACTACTACTATATCAAGACAGAGGAAAAAGCAGGAACCAGCGGTCATGGCAGAGCTTGACCAGAGACTAAGGCGGTTAAATTCCATAAACGCGAGTGATGAACAATAGTTTTGTGATGGAAACCTTATAATTGTAGTATATATATATATATACATGTTGTATCTCTATCAGGGCATGCTGCCCTTATAGGACATCACAACCCTTGTGCTCATAATGCAATGAGCTAAACAACAGCTTGAAGAGTCCTGTTGTGTTTATTTATGTTGATAGATCTTCAAAAGTGTAAATTTTGAACTGTTGTATACTAGTCCTATATTATTTCCCCTTGTTAA</gDNA_template>
            <first_frame> F  S  F  C  L  C  P  S  C  S  F  S  P  C  Q  E  V  N  F  I  V  S  I  F  F  L  R  V  V  *  Y  I  F  M  L  I  H  I  L  L  V  Y  F  C  N  F  L  P  K  K  *  P  F  F  *  I  F  G  C  P  F  V  K  K  A  Q  F  L  L  F  N  G  K  N  L  A  F  L  *  I  I  G  Y  P  M  C  K  K  A  Q  F  L  Q  F  N  A  K  N  L  T  F  L  *  I  L  G  Y  L  Y  V  K  R  F  N  F  Y  T  F  M  L  K  L  R  A  C  F  V  *  N  P  K  K  C  M  E  P  I  A  R  E  T  W  R  L  N  I  N  L  K  F  Q  F  *  G  Q  V  Y  M  P  E  G  Q  R  L  L  *  N  F  K  I  C  M  D  L  L  L  K  G  M  L  M  M  L  M  C  *  M  R  L  G  R  K  L  G  N  K  G  K  F  G  G  H  *  K  L  A  K  V  L  I  G  I  C  K  L  M  F  P  Q  P  L  K  H  P  S  N  S  L  L  W  *  M  Q  L  L  S  R  S  S  L  E  K  E  F  H  L  F  *  G  L  R  C  G  F  H  Y  Q  E  L  L  R  R  N  R  L  P  R  I  V  I  M  R  I  *  Q  R  L  Y  R  I  R  S  H  L  Q  P  S  R  L  I  M :   T  F  H  E  P  F  L  V  T  P  G  W  T  L  L  R  V  M  L  P  L  G  G  S  L  L  P  I  L  S  V  I  L  M  L  A  T  A  R :   D  *  T  M  L  Q  H  Y  Y  C  W  *  *  K  P  K  K  R  L  S  G  *  L  L  S  F  *  R  M  C  *  S  P  T  V  I  I  R  T  Y  L  D  V  M  L  N  K  E  C  S  R  I  Y  *  P  K  N  V  Q   : G  *  P  L  I  W  R  H  W  S  S  T  F  L  L  F  A  P  N  G  F  S  A  F  S  P  K  A  C  L  L  R :   Q  P  C  G  S  G  T  S  F  S  M  K  V  Q  I  F  Y  F  M  W  H  W  Q  F  L  R :   *  T  K  K  S  C  *  R  C  I  M  L  G  M  *  F  I  *  S  R  D  A  H  I  N  F  L  I  L  M  T  C  *  R :   L  L  L  I  K  L  V  L  *  L  L  L  L  Y  Q  D  R  G  K  S  R  N  Q  R  S  W  Q  S  L  T  R  D  *  G  G  *  I  P  *  T  R  V  M  N  N  S  F  V  M  E  T  L  *  L  *  Y  I  Y  I  Y  T  C  C  I  S  I  R  A  C  C  P  Y  R  T  S  Q  P  L  C  S  *  C  N  E  L  N  N  S  L  K  S  P  V  V  F  I  Y  V  D  R  S  S  K  V  *  I  L  N  C  C  I  L  V  L  Y  Y  F  P  L  L  </first_frame>
            <second_frame>  F  H  F  V  C  V  P  H  V  P  F  H  L  V  K  R  L  I  L  L  F  L  Y  S  F  *  G  L  C  D  I  S  L  C  *  S  T  F  Y  *  F  I  S  A  I  F  C  Q  K  N  D  L  S  F  E  F  L  D  A  H  L  L  K  K  L  N  F  C  Y  L  M  V  K  I  W  P  F  F  E  L  L  D  T  P  C  V  K  K  L  N  F  C  N  L  M  L  K  I  *  P  F  F  E  F  L  D  T  Y  M  *  K  D  S  I  F  I  L  L  C  *  S  *  E  L  V  L  C  K  I  Q  K  N  V  W  N  P  *  Q  E  R  H  G  D  *  I  S  I  S  S  S  N  F  E  A  K  Y  T  C  Q  K  G  K  D  Y  C  E  I  S  R  S  V  W  I  Y  C  *  R  E  C  *  *  C  *  C  V  E  *  G  *  G  E  S  *  G  T  R  E  S  L  V  V  I  R  S  *  Q  R  C  *  L  V  F  A  N  S  C  F  L  N  P  *  N  I  P  Q  I  L  C  F  G  E  C  N  Y  S  Q  E  A  H  *  K  R  N  S  T  C  F  E  A  *  G  V  V  F  T  I  R  S  C  *  E  E  I  D  C  P  G  *  L  L  *  G  F  D  K  G  C  T  G  *  G  H  T  C  N  Q  A  D  *  S   : *  P  S  T  N  L  S  W  S  P  L  V  G  H  C  *  G  S  C  C  P  *  A  G  P  C  C  L  F  F  P  *  F  *  C  W  L  L  P   : G  I  K  L  C  C  S  I  I  I  A  G  D  E  N  R  R  R  G  F  L  D  D  C  C  P  S  R  E  C  V  S  H  R  L  L  *  *  E  L  I  W  M  S  C  *  T  K  S  V  Q  G  S  I  N  Q  K  M  S  K  :  D  S  R  S  F  G  G  T  G  V  R  R  F  S  C  L  H  R  M  V  S  L  P  F  R  Q  K  L  A  F  *   : D  N  L  A  G  L  G  R  P  F  Q  *  R  C  K  S  S  I  S  C  G  I  G  N  F  *   : D  E  R  R  R  V  A  D  G  A  S  C  W  G  C  N  S  Y  N  P  E  M  H  T  S  T  F  *  S  *  *  L  V  D   : G  C  F  *  S  N  W  F  Y  D  Y  Y  Y  Y  I  K  T  E  E  K  A  G  T  S  G  H  G  R  A  *  P  E  T  K  A  V  K  F  H  K  R  E  *  *  T  I  V  L  *  W  K  P  Y  N  C  S  I  Y  I  Y  I  H  V  V  S  L  S  G  H  A  A  L  I  G  H  H  N  P  C  A  H  N  A  M  S  *  T  T  A  *  R  V  L  L  C  L  F  M  L  I  D  L  Q  K  C  K  F  *  T  V  V  Y  *  S  Y  I  I  S  P  C  * </second_frame>
            <third_frame>   F  I  L  S  V  S  L  M  F  L  F  T  L  S  R  G  *  F  Y  C  F  Y  I  L  F  E  G  C  V  I  Y  L  Y  V  N  P  H  F  I  S  L  F  L  Q  F  F  A  K  K  M  T  F  L  L  N  F  W  M  P  I  C  *  K  S  S  I  F  A  I  *  W  *  K  F  G  L  S  L  N  Y  W  I  P  H  V  *  K  S  S  I  F  A  I  *  C  *  K  F  D  L  S  L  N  S  W  I  P  I  C  K  K  I  Q  F  L  Y  F  Y  V  K  V  E  S  L  F  C  V  K  S  K  K  M  Y  G  T  H  S  K  R  D  M  E  I  E  Y  Q  S  Q  V  P  I  L  R  P  S  I  H  A  R  R  A  K  I  T  V  K  F  Q  D  L  Y  G  F  T  V  E  G  N  V  D  D  V  N  V  L  N  E  V  R  E  K  V  R  E  Q  G  K  V  W  W  S  L  E  A  S  K  G  A  N  W  Y  L  Q  T  H  V  S  S  T  L  K  T  S  L  K  F  S  A  L  V  N  A  I  T  L  K  K  L  I  R  K  G  I  P  P  V  L  R  P  K  V  W  F  S  L  S  G  A  A  K  K  K  S  T  A  P  D  S  Y  Y  E  D  L  T  K  A  V  Q  D  K  V  T  P  A  T  K  Q  I  D  H  :  D  L  P  R  T  F  P  G  H  P  W  L  D  T  A  E  G  H  A  A  L  R  R  V  L  V  A  Y  S  F  R  D  S  D  V  G  Y  C  Q  :  G  L  N  Y  V  A  A  L  L  L  L  V  M  K  T  E  E  E  A  F  W  M  I  A  V  L  L  E  N  V  L  V  T  D  C  Y  N  K  N  L  S  G  C  H  V  E  Q  R  V  F  K  D  L  L  T  K  K  C  P  R :   I  A  A  H  L  E  A  L  E  F  D  V  S  L  V  C  T  E  W  F  L  C  L  F  A  K  S  L  P  S  E  :  T  T  L  R  V  W  D  V  L  F  N  E  G  A  N  L  L  F  H  V  A  L  A  I  F  K  :  M  N  E  E  E  L  L  T  V  H  H  V  G  D  V  I  H  I  I  Q  R  C  T  H  Q  L  F  D  P  D  D  L  L  T  :  V  A  F  D  Q  I  G  F  M  T  T  T  T  I  S  R  Q  R  K  K  Q  E  P  A  V  M  A  E  L  D  Q  R  L  R  R  L  N  S  I  N  A  S  D  E  Q  *  F  C  D  G  N  L  I  I  V  V  Y  I  Y  I  Y  M  L  Y  L  Y  Q  G  M  L  P  L  *  D  I  T  T  L  V  L  I  M  Q  *  A  K  Q  Q  L  E  E  S  C  C  V  Y  L  C  *  *  I  F  K  S  V  N  F  E  L  L  Y  T  S  P  I  L  F  P  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0026C13.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="166414" stop="166995"/>
                    <exon start="167894" stop="168010"/>
                    <exon start="170401" stop="170579"/>
                    <exon start="170674" stop="170767"/>
                    <exon start="170898" stop="170975"/>
                    <exon start="171107" stop="171208"/>
                    <exon start="171532" stop="171669"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFDLSLNSWIPICKKIQFLYFYVKVESLFCVKSKKMYGTHSKRDMEIEYQSQVPILRPSIHARRAKITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGKVWWSLEASKGANWYLQTHVSSTLKTSLKFSALVNAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTAPDSYYEDLTKAVQDKVTPATKQIDHDLPRTFPGHPWLDTAEGHAALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEEAFWMIAVLLENVLVTDCYNKNLSGCHVEQRVFKDLLTKKCPRIAAHLEALEFDVSLVCTEWFLCLFAKSLPSETTLRVWDVLFNEGANLLFHVALAIFKMNEEELLTVHHVGDVIHIIQRCTHQLFDPDDLLTVAFDQIGFMTTTTISRQRKKQEPAVMAELDQRLRRLNSINASDEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 51 chains have been computed
$ 
$ memory statistics:
$ 1127712 bytes spliced alignments in total
$ 32 spliced alignments have been stored
$ 35241 bytes was the average size of a spliced alignment
$ 30856 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1542 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 61 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 13:23:17
-->
