<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:43:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="3330" stop="4518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3628" g_stop="4177" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3628" e_stop="4177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATTTTCTCTCATATTTATCTTTTTTAATTGTTAATTCTCTCTTTCATTTAATTTTTT-T-ACTCTCATGATTATCTTTTCTGATTTTCCTTCAACATTCAAGTTGCAAAAATTTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACGAGAATCCCTTTGATTAAGGTATCTCTAATCTCTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGACTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCACTGCTAAAATGAGGGAACAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACTTTTCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGGATA</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGC--AAATTTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="3354" stop="4515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3654" g_stop="4177" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3654" e_stop="4177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAATTGTTAATTCTCTCTTTCATTTAATTTTTT-T-ACTCTCATGATTATCTTTTCTGATTTTCCTTCAACATTCAAGTTGCAAAAATTTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACGAGAATCCCTTTGATTAAGGTATCTCTAATCTCTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGACTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCACTGCTAAAATGAGGGAACAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACTTTTCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGGATA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGC--AAATTTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255643" ref_strand="+" ref_description="SGN-E255643 [cLEG-36-L9]">
      <seq>gttaaatggagaaaggtagaggggtgaacctataaatctgctgagtttcaaaccttgtgccattggctccagggttttccccattataaataaataagtatcgagtcttgtacttctattttgatacaggtaagaataatatcaagtctcgtgctaagttctagaatagatattgactttatctggtagaggactggacattccagcattgttcttttttctctactttcttggatgtattttgagcatcttattgcctattacatgacctttctttcgatcaataacatttctggtcttttcttttctcagccaattcaaactatgagctgggaagaggtgacaaattaggtggttggaaaccacaaccagttccaagccttaaaggtgttcgtgttattcagatagctagtgggggatatcattctctagctttgactgataaaggagaagtgctttcatggggtcatggaggccatggtcaactgggtaattcttctcttcaaaaccagaaagttcccatccaagttgaagctttggcccacgagaaagtcatctatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="14202" stop="12952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13903" g_stop="13463" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13462" i_stop="13376" i_length="87">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13375" g_stop="13252" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="565" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E255643" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13903" e_stop="13463"/>
          <exon e_start="13375" e_stop="13252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATGGAGAAGGGTAGAGGGGTGAACCTATAAATCTGCTGAGTTTCAAACCTTGTGCCATTGGCTCCAGGGTTTTCCCCATTATAAATAAATAAGTATCGAGTCTTGTACTTCTATTTTGATACAGGTAAGAATAATATCAAGTCTCGTGCTAAGTTCTAGAATAGATATTGACTTTATCTGGTAGAGGACTGGACATTCCAGCATTGTTCTTTTTTCTCTACTTTCTTGGATGTATTTTGAGCATCTTATTGCCTATTACATGACCTTTCTTTCGATCAATAACATTTCTGGTCTTTTCTTTTCTCAGCCAATTCAAACTATGAGCTGGGAAGAGGTGACAAATTAGGTGGTTGGAAACCACAACCAGTTCCAAGCCTTAAAGGTGTTCGTGTTATTCAGATAGCTAGTGGGGGATATCATTCTCTAGCTTTGACTGGTAGCTTACAGTGAAACTCCTCTATGTAACATGCATCTCTGATCTATGTATCTGAAATACTTATTTAGAAGTATCCTTTACTCTCAGATAAAGGAGAAGTGCTTTCATGGGGTCATGGAGGCCATGGTCAACTGGGTAATTCTTCTCTTCAAAACCAGAAAGTTCCCATCCAAGTTGAGGCTTTGGCCCACGAGAAAGTCATCTATATATC</genome_strand>
        <mrna_strand>GTTAAATGGAGAAAGGTAGAGGGGTGAACCTATAAATCTGCTGAGTTTCAAACCTTGTGCCATTGGCTCCAGGGTTTTCCCCATTATAAATAAATAAGTATCGAGTCTTGTACTTCTATTTTGATACAGGTAAGAATAATATCAAGTCTCGTGCTAAGTTCTAGAATAGATATTGACTTTATCTGGTAGAGGACTGGACATTCCAGCATTGTTCTTTTTTCTCTACTTTCTTGGATGTATTTTGAGCATCTTATTGCCTATTACATGACCTTTCTTTCGATCAATAACATTTCTGGTCTTTTCTTTTCTCAGCCAATTCAAACTATGAGCTGGGAAGAGGTGACAAATTAGGTGGTTGGAAACCACAACCAGTTCCAAGCCTTAAAGGTGTTCGTGTTATTCAGATAGCTAGTGGGGGATATCATTCTCTAGCTTTGACTG.......................................................................................ATAAAGGAGAAGTGCTTTCATGGGGTCATGGAGGCCATGGTCAACTGGGTAATTCTTCTCTTCAAAACCAGAAAGTTCCCATCCAAGTTGAAGCTTTGGCCCACGAGAAAGTCATCTATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318231" ref_strand="+" ref_description="SGN-E318231 [cTOA-29-E11]">
      <seq>agacgttgatggcattctattaccgaactcgtcgtgctcttccaattttccggtggcggcgtcacctttcttcgtcttcttcttccaaagttgctcttctttgggaatctaagtccaccgactcacaaaaagcagtcactgtccaactgtattcctggggacgtggtgcttccggtcaattgggtggcggtattgaagaaattagaatatacccatctcctgttgcttcattttctttgtctcccactttccggttatcctcccccattcctggtcgtcttccttctgctcctgtgctgctgtcgtcttcattcaatgaggggaaggtggacgttgaaataggaatttcttgtgggcttttccattcagctttattggttgatgggaatctgtggatttggggaaaaggtgatgggggtcgtcttgggtttggccatgagaacccagtttttgttcctacgttgaatactcatttggactcggttcgaagtgttgctcttggtgggcttcattccgtagctctgaactctcttgggcaggtcttcacttggggttacggtggctttggcgctcttggtcataaagtttatcacagagagctggtccctagattagtggagggttcttgggatgcagaaatatgccatgtagcaaccagtgggacacatacagctgctataacaaaatcaggtgaactttatacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="35486" stop="16302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35186" g_stop="34637" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34636" i_stop="32811" i_length="1826">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32810" g_stop="32671" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="690" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32670" i_stop="32382" i_length="289">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32381" g_stop="32363" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="708" r_length="18" r_score="0.684"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E318231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35186" e_stop="34637"/>
          <exon e_start="32810" e_stop="32671"/>
          <exon e_start="32381" e_stop="32363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGTTGATGGCATTCTATTACCGAACTCGTCGTGCTCTTCCAATTTTCCGGTGGCGGCGTCACCTTTCTTCGTCTTCTTCTTCCAAAGTTGCTCTTCTTTGGGAATCTAAGTCCACCGACTCACAAAAAGCAGTCACTGTCCAACTGTATTCCTGGGGACGTGGTGCTTCCGGTCAATTGGGTGGCGGTATTGAAGAAATTAGAATATACCCATCTCCTGTTGCTTCATTTTCTTTGTCTCCCACTTTCCGGTTATCCTCCCCCATTCCTGGTCGTCTTCCTTCTGCTCCTGTGCTGCTGTCGTCTTCATTCAATGAGGGGAAGGTGGACGTTGAAATAGGAATTTCTTGTGGGCTTTTCCATTCAGCTTTATTGGTTGATGGGAATCTGTGGATTTGGGGAAAAGGTGATGGGGGTCGTCTTGGGTTTGGCCATGAGAACCCAGTTTTTGTTCCTACGTTGAATACTCATTTGGACTCGGTTCGAAGTGTTGCTCTTGGTGGGCTTCATTCCGTAGCTCTGAACTCTCTTGGGCAGGTCTTCACTTGGTCAGTACCAATTCCAACCTTGTACTGTGCATTTTTTGCCTTTCCTTGTGATAGAAATAAAGAAAGTGAAAAATTAATGTATTACTTATTTGCTCATTGTTGTTTTTACGTGGAGAATTGAAAGGTCTTAATGCTTATTGTTAACAAGATTTCATTGACAGTAACTTTTTTTATGGTCTCACTTTCGCTCAGCAATAGGATGAAATGTAGAGGTCCTAAAGGTTGAAAAGATTTGGGTCTTGACCAAAAGAATATCTGTCTAGTCTTATTAGTGCCTTCACTTGGTTTTGCTTGATAACTAGAAAGGAATGGAGAAAAAGGTTGAAGTAATTTTGATGCTGATCCGAAGATTTTTCATTTCTAGTCTCTTATTTTGGCTACAGCCCCTTGTTGCTTGTTATTTAGAACTGTAAATTTAATATGAATGGTCACATACAATGCCGCGGAAGAGGGTGTAAACTTGCTTTATCACTGTTCTTTTGTGTAAATAGCTGTTGTAAGGAGAAAGGAGTGAGATTTTCATTGCATATTTGTATAGTCTTGATAGTGTGTCCTTTATGTAGTTTCTAAGGTAAATAGTATTTATGTGGACGTATTAGAGATCGAATGATCTCTCTGATGAACCAGCATATATTTATCCTGTCCATAATCTCTTATTTTTACTTACCTCTCAGTAGGAGCTCCCACCTTTTTGCTCCCTTGTTGACTCAAACCACAACTTTAGGGTTGCAGGTGGAAGTTACTTATCATCTGAGCAACCCCTTCTAGTTAGTTTACTATCTCTTTGTCATGACAACTGTCGCTTATATTGTTATTGTGAACTTAAGATGAATGAAGACACAGAATGGTTGCACAAGGTAAAGATGTGAATTATGTATTTAAGCACTTCTGATAATTTGTTTCGACCTGTAGTCGGAAGACATACCTTTAGATATGTGTAATTGTGAATTGAAGAAAAAGAAGAAAGATTTATGAACGCATATCTGTTTCCCATTTTTTTTGTTGTTTTGACCTGGAGCATGGAAAATGCCTAATGCGATAATGCCTATGGTTAGCAAGGTTTTCATGTATAGTAATCTCTTTGTAGCATGACCCGCATGTAGTTTTGCTAAAAAATATGGAGGTACTAAAGTTTGAAGTAGTATGGGGGCTGAATAAAAAATCCAATTTTGTCTATATGGCATGGCCTTCACTTAGTTTTACTTTGCCAATAAATAGGGATGTATAGAAAAGTTGGAGGTATTTATATGCTGAATGAAAAAATCCATGTTTAGTCTCAATTTTTGGCAACAATCTTATTATCATATTTGTGAATCTAAGATGCTTGAACACATATAATGCTGCGCAAGCGAAACTGTGAACTTTTTTTTCACAGTTCCATTGTGTATATAGACATCATCACCCCTTTTCAGCATGGCACTATACTCGCCCTTTCTGCTAGGTCTAGCGAAATAGGCTTTAGGATGAATCAACATTGAACTCATGCATTTTCCATTGAAGAGTTTGACATAGAAGTATTCTAATTCCTTTAGTGAAAGAGAGATAAAATTTAATTGTTGATGGTGAATAGTTTGACATGTTTTTGGATTTTTTTTACCTCCTTAGCTTTAGCTTAGGCTACTTGTACTAGTGCTGATATGTTTTTTTTGCCCTTCTGTACTAGAGCTAACTGGTCATACCTTTTGTAACTTGGCATATTCCTGATGCCCATTCAATGATAATCTTTAATCTTATCACAGGAATAGTTTGAATGACTTGGTGAAATCATAATCAGCAGTTTTGTTCATTGTAACTTGATTCTTTTATGGAAAAAATGAAGTTTTCAGGGGTTACGGTGGCTTTGGCGCTCTTGGTCATAAAGTTTATCACAGAGAGCTGGTCCCTAGATTAGTGGAGGGTTCTTGGGATGCAGAAATATGCCATGTAGCAACCAGTGGGACACATACAGCTGCTATAACAAAATCAGGTAGGATATTCAAACACTATCACGTTTCACACTTCACCAGCTAGAGAAAATGTGGGTATGTGCTTTTCTTTATGATCGATAGCTACAATTTTTGGATTGTTTGATTTAAGTATTCAACTTCTATGTAGCTGATTCATCATTAGTAGTTATAATTGGATTACTCATTTGACAATAAAATCACTTCTTTCATTTTGAACTCGATCTTACTTTATCAATCCGGAGTTATCTGGATGGTAGTTATTGCTTTTCCTAGGTAGAAAAATCTTGAATTGGCAAACAGTTCTTCTAGATGAAGCTTTGTACTAGAC</genome_strand>
        <mrna_strand>AGACGTTGATGGCATTCTATTACCGAACTCGTCGTGCTCTTCCAATTTTCCGGTGGCGGCGTCACCTTTCTTCGTCTTCTTCTTCCAAAGTTGCTCTTCTTTGGGAATCTAAGTCCACCGACTCACAAAAAGCAGTCACTGTCCAACTGTATTCCTGGGGACGTGGTGCTTCCGGTCAATTGGGTGGCGGTATTGAAGAAATTAGAATATACCCATCTCCTGTTGCTTCATTTTCTTTGTCTCCCACTTTCCGGTTATCCTCCCCCATTCCTGGTCGTCTTCCTTCTGCTCCTGTGCTGCTGTCGTCTTCATTCAATGAGGGGAAGGTGGACGTTGAAATAGGAATTTCTTGTGGGCTTTTCCATTCAGCTTTATTGGTTGATGGGAATCTGTGGATTTGGGGAAAAGGTGATGGGGGTCGTCTTGGGTTTGGCCATGAGAACCCAGTTTTTGTTCCTACGTTGAATACTCATTTGGACTCGGTTCGAAGTGTTGCTCTTGGTGGGCTTCATTCCGTAGCTCTGAACTCTCTTGGGCAGGTCTTCACTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTACGGTGGCTTTGGCGCTCTTGGTCATAAAGTTTATCACAGAGAGCTGGTCCCTAGATTAGTGGAGGGTTCTTGGGATGCAGAAATATGCCATGTAGCAACCAGTGGGACACATACAGCTGCTATAACAAAATCAG.................................................................................................................................................................................................................................................................................................GTGAA-CTTTATACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270053" ref_strand="+" ref_description="SGN-E270053 [cLEM-7-G9]">
      <seq>atgttctcagaatagtctggataaacccaatcaaattgttaagccctctttcactttctataatttccacaagaaaatcggccgtcgttctcttggagtcgccagaagttttactcggatgcagcatcacttcaacaatcctttggactagctgaatttcatgaccgattccctgtatctggaattttcaagctcttagagagtgaccttattaatggagacgattgatcaaccactaatacctggactaccagatgatttggcattgagatgtctagcaatgatatcacacggatatcatggcattcttgaaacagtaagtaggcgatggaggaagctattccatagtgcagaatattccaattataaagctagagaaggttggtctggtaactggttatttgttctgactggaggatctgagaatcaatgggttgcttatgatcctgaagctgataggtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgatcaagtaattccccatcaaacagccctgacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="37002" stop="39290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37302" g_stop="37517" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37518" i_stop="38597" i_length="1080">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38598" g_stop="38990" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="609" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E270053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37302" e_stop="37517"/>
          <exon e_start="38598" e_stop="38990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTCAGAATAGTCTGGATAAACCCAATCAAATTGTTAAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAATGTAAGCAAGTCTCCATTTCATCACTTTGTGTTTGATTTTTGGCTTTGATTATTTCCATTACAATAAAGGGTAGTCTTGCGAAGATTGTTAGAATGGGTTTACACCAATTGGGTCAAAAAACGAGATATCTATAATTCATTTTATTGATGGATTGTCATTTTATGTTTGTGGTGTTGTCTTGGTCAGAGAGGAATTTAGGATTTGTATCAACATTGATGCACAACTAAAACAACAAAAGAAAATAGTTTGAAGTGGGAATTGATTGCTAGTTTTTTATGTAAATAACTCAACATTTAACCACGATCGCCATTTTTCCTTCGTGTAGGATGGGTGTATAATTATTTACCAATTCTAGAAATATATACATAAAATACCTAGTTTAGGAGAGACCATGGGTGCACTTGCCCCAATTTTAGTGCATACACTCACCCCTGGTCTTGGTGCATGATCATGAAAACTAGGTGCTTTATTATCTGAGTTTTATGTTTTGGATTCTCTCTTGAAGGGAAATCTGGTATCTGTTTTAATCCCCTTGATGACATTGAGGTACATGAACTAGGGTTTGCTCAAAACATATGTTTTTGGGGAACAGTAGAGGTCATAGAAAAGAAAGCAAAGCTGGGATATTGTCAAAATCAGCAATTGCTTGTTTAAGACAAATTGTTGGCTCGAAGTAGCTCAAATCCTGGAGCTCCTTTTTGCTATAACCCATCTTTCTATTCTTATCCGTTCTTTTCTTCTACTTTTTTGTGTGTATTATTCAGTCACTTCCTTTTCTCTTCTTCCATTATTTCAGTTGAGGAGAAATTGCTGTCTGTAGTACTTTGGAATGCAGTACTTTATTGCCGTGCTATTTCTTCCATTGTGCCCCTTGTTATGGGTTCTTAAGCCCAAAAATCATTCCTTCCCCTGTTAAATTTCTTGTACTTACACGGGGCCAAGTGCTAATGAACTACATATACTAAAAACTTCCATACATCTCTTGTTGTGACATTCCAAATCCTGAACTCTGCATCTGCATTCTTTTTCATCCACCTGTATTTCATACTGTTAAGTCATTTACAAAGTAATTTTCTGCAGGGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGAC</genome_strand>
        <mrna_strand>ATGTTCTCAGAATAGTCTGGATAAACCCAATCAAATTGTTAAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302409" ref_strand="+" ref_description="SGN-E302409 [cLEW-27-L14]">
      <seq>gaaaatcggccgtcgttctcttggagtcgccagaagttttactcggatgcagcatcacttcaacaatcctttgaactagctgaatttcatgaccgattccctgtatctggaattttcaagctcttagagagtgaccttattaatggagacgattgatcaaccactaatacctggactaccagatgatttggcattgagatgtctagcaatgatatcacacggatatcatggcattcttgaaacagtaagtaggcgatggaggaagctattccatagtgcagaatattccaattataaagctagagaaggttggtctggtaactggttatttgttctgactggaggatctgagaatcaatgggttgcttatgatcctgaagctgataggtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgatcaagtaattccccatcaaacagccctgacgacaaatgaagttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="37074" stop="39303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37374" g_stop="37517" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37518" i_stop="38597" i_length="1080">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38598" g_stop="39003" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="550" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E302409" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37374" e_stop="37517"/>
          <exon e_start="38598" e_stop="39003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAATGTAAGCAAGTCTCCATTTCATCACTTTGTGTTTGATTTTTGGCTTTGATTATTTCCATTACAATAAAGGGTAGTCTTGCGAAGATTGTTAGAATGGGTTTACACCAATTGGGTCAAAAAACGAGATATCTATAATTCATTTTATTGATGGATTGTCATTTTATGTTTGTGGTGTTGTCTTGGTCAGAGAGGAATTTAGGATTTGTATCAACATTGATGCACAACTAAAACAACAAAAGAAAATAGTTTGAAGTGGGAATTGATTGCTAGTTTTTTATGTAAATAACTCAACATTTAACCACGATCGCCATTTTTCCTTCGTGTAGGATGGGTGTATAATTATTTACCAATTCTAGAAATATATACATAAAATACCTAGTTTAGGAGAGACCATGGGTGCACTTGCCCCAATTTTAGTGCATACACTCACCCCTGGTCTTGGTGCATGATCATGAAAACTAGGTGCTTTATTATCTGAGTTTTATGTTTTGGATTCTCTCTTGAAGGGAAATCTGGTATCTGTTTTAATCCCCTTGATGACATTGAGGTACATGAACTAGGGTTTGCTCAAAACATATGTTTTTGGGGAACAGTAGAGGTCATAGAAAAGAAAGCAAAGCTGGGATATTGTCAAAATCAGCAATTGCTTGTTTAAGACAAATTGTTGGCTCGAAGTAGCTCAAATCCTGGAGCTCCTTTTTGCTATAACCCATCTTTCTATTCTTATCCGTTCTTTTCTTCTACTTTTTTGTGTGTATTATTCAGTCACTTCCTTTTCTCTTCTTCCATTATTTCAGTTGAGGAGAAATTGCTGTCTGTAGTACTTTGGAATGCAGTACTTTATTGCCGTGCTATTTCTTCCATTGTGCCCCTTGTTATGGGTTCTTAAGCCCAAAAATCATTCCTTCCCCTGTTAAATTTCTTGTACTTACACGGGGCCAAGTGCTAATGAACTACATATACTAAAAACTTCCATACATCTCTTGTTGTGACATTCCAAATCCTGAACTCTGCATCTGCATTCTTTTTCATCCACCTGTATTTCATACTGTTAAGTCATTTACAAAGTAATTTTCTGCAGGGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTC</genome_strand>
        <mrna_strand>GAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGAACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255780" ref_strand="+" ref_description="SGN-E255780 [cLEG-36-P6]">
      <seq>acacggatatcatggcattcttgaaacagtaagtaggcgatggaggaagctattccatagtgcagaatattccaattataaagctagagaaggttggtctggtaactggttatttgttctgactggaggatctgagaatcaatgggttgcttatgatcctgaagctgataggtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgatcaagtaattccccatcaaacagccctgacgacaaatgaagttttccaatttgatcctttcagaaaagagtggagaaatgttgcaagtatgagaacagcacgttctaactttgcctgcagtgttgtctctggtaaggtttatgtagctggagggcgcaacacatcatcgggaggaggacttgttcttgctgaagtttataatccactgacagacaagtgggaagacctaccacctctgccaagtccccaaatggattgcataagcctaccatacaatggtaaattttatgttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="38370" stop="45303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38670" g_stop="39173" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39174" i_stop="44922" i_length="5749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44923" g_stop="45003" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="585" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E255780" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38670" e_stop="39173"/>
          <exon e_start="44923" e_stop="45003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAAGTATGTTTTTAGAAAATTATGGTATATTTTTTTGAGCAAGCATTACTTTATGAATTTTAAGTATAAAAGGAAATATGGCTTTTTGGATACAAAACTGATCTTAGATTGGGGTATATAAGTAGTTTATCATGCTATTATTTGGATCACAAGTTATCCAATTGTTGTCGAGATTGTTAAATTTATCTTAGGGACTTGGATATGAAATATAGCAGAATATACGAAGTATGGGAATGCCATGTGAATGTTTATCTAGATGTGTGCTGCTTCTAAGTAAATACCTGTTTGTGTTGAGTGTTGACAGAGCTGTTAAAATACGATCCTTTTATTCTTGAGCTGAGTACTGTGTCTTCAAGCAATGAATCTTAGATCTCAAAATGGAATTGCAAGCATACTAACAATGATTTCTGAACCAGACTATTTATCTTCTTATTCTCTTGTTTCTGCGTGTTTTTAGTTTTTCATATCAACATATATCATTTTTTTAATTGTTTAAGGTAGTACATATTAGAATCAGCGACAAGTTCGTCTTGTGAAGTAATTGCAAAGGTGTTGCCATACGAAAAGTGTAGTGACCCCAAAGAGTCAACGATGGCATCAGTGTTGTTTGCAATAGCTATGTTGCACCAATAATAAAGTAAAAGATGTATATTTTTATTTAATACTAATTACAGATTCCGATTTGCTCTCGAAAATTCTACCATTAGGTTCATTCCTTTCTTCCCATATAATCCACCATGTATATTCTAAGTTTTCCTTGCCCCCCAAAATACTAAATAAGAAGCTCCAGATTTGAGACGTGAATCGTCTGGGAAGAATAAGGTGATTCACATCTTCATAATGCTTATGACATAGAACACACCTATTATGAACGTTGACTCCCCTTTTTGAAGGTTTTCATGTGTAAGACAGGCCCTTCTAGCAACTAACCAAGTAAACAGTTGACTTTCATGGTAGCTTTGTTCTGTTGAATGAGAAGGGGACAGGGAGATTGTGCCAGGTAATGGGAGCAATATGAGAGATGTTGTGATTTTGGGTACTGTGGGTGTATAAAGATTAATGAGGTTAAGCTATTCCTAGGATGAACATGGGAAGAATGATTGGGGAAACGAGATTCCGGTGGAGTTCTTGAAGAACACAGGTAAGACAAGAAGGTTTGGAATGGCTGATGGGGGGCTGTTCATATCATTTTAAGACTACAAAATGCTTGAAAAGTGGGGGTGGAGTACAATGATCCTGTTGTACTGAAACAAGGGTGAGATTCATAACTACAAGTTGATATTCATGGGGTATTAAGCTGCTTAGCCACACTATGAAAGTCTTGGAAAGGGTGATGGAGATGAAGATGAGGAGGGGTGTGTCTTTTTTTGAGAACCGGTTCGGATTCATATTGGATGATCGACTATAGAAAGCATTCATGTTGTGAGGAGACTGGGGGAGAGTAAATGGAGAGAAAAAGGGACTTATATATGATATTCATTGACCTAGAAAATGTATATGATAAAGTCGGGGAGGTCCTATGGAGATGCCTTAAGGCTGGAGGTGTATCAATGGCATACATTGGGGTGATGAAGGACATTATGATAGAGCCAAGCCCCGGGTAAGAGCAATGGAAAGAGACTCAGAGTAACACACAAGGATCTTAATACAAGCACTCCACAAATGCTTCCAGGCATATTTGCAATGACCCTTAATTGAAGGGTCTCTTCTGGACCCAGCCTCTCCCCTCTCTGGTAGACTTCCTCCATCGGAGCAGCCATCTAGAACCCAACTTTTTTCATGGACAACAAAATCCTCTTTCGCCTTGGGGCCAAATCTTATGAATCACAGAATCTAAATCCAAATCAGGGATTTGGTATGATTGGATCAGAAGTGCATGATACTACATGAGCAAACTGATACTCAGCAAGGGAGCCATGTCTTGGATATGCAAAAGGCTCAAGGAGGCATCGGAGAACAAAGGAAAGACCTTCAAGTCTTGGAAATGCAAAGATAACACAACCAACATTTTCTTAACACAAAAGTTCAATCAATATGGAAGATTTGTCTCAGTAATTACTGTTAAAGGAAATGTCAGAGCAGCAATTATCCTGTCAGTTAACACATTCAATGAGGGGTGGAATGTTCTAATAGCAAAATAGAAAATTTCATTGATGGAAGTAGTAGTACAAAATTAATCACAAACAAGCAACCTAGACTCCTTAACCAAATCAGAGGGGGGAAGAGTTACAAAGAAATGTTTTTCAAGAACAAATGGACTAAGAGAGACATAGGAAAAAGGCATGCTGGACAGATGCTTAGTGGGGAGCTTTGCAAGAGCTGAAGACGCTCCAACTCGTAATGACATCAGAAGATGGGCTCAACAAACTTGGAATGGAGCCCAGGGAGTTCAAACATAAAAAAGGAGAATAGAGAGAGTATCTGCTCGCGCCGCACTTTTGGGGTTGAAGTTCCCACGTCTGCTCCTCTCTAGCTTCATGCCATTGAAGCGCATGTCCTTCGCATCACGTCACCGCTTAAAAAGGTGGAGCACCCACTTATCTCAACACTGTTGTTTCCTTCTTCATTCCTTAAAACAAATAATGGAAATCCCCAACCATGCACTAGATCAAAACAATTATTACATGAACCATCACTATTCAACTATCCTCCTATAAAGATTTATTGGTCATTTGGGCCCTATTGGACAAAGTTATTGATATCATCCTAGCATTTAGTTTAAGTTTTCTTATCTATATGTAGCAATAGTAAAATTGTGTCCTCCATCCAAATTGGTTCGTACAAAATACCCTTACCTGGCAATAGTCGAATCTCTTTACTTTGCAACTTTATCCTTATGTCTTGGTTTCACAATGATTTTAGTTTCTATTTAATCCCTCTTGTGTCGTGTTGTTAGGCATTTTCCCTATCCATGTAGTCTCTTGCCTACGACGACTTATTTGAATTTTATGCCTCATGGACTAGTATCTACCCTTTGTAACACCGCTTTAGGGTGCCTATACAACAATAGCAATCAAGTGTTATCAAAAGAAAAAAATCTCTAAAGTTTGTTACGGGAGAAACAAATACAATTATATATGTTTAGTCCTAGACTAATAAGTATAAGCGTGAATGACAAATATAAGAACAAAGAAACTGAAAAAAAAATACGATAAAATGAAATATCAATTGCTTAGTGTCTCCTTTTCACAAGAGGTTCATTGGCAAAGAGAAGTATGTCTTAGAACATTGATGACGAAACTAAAATGTACTTCAAGTGAGGCAAAGCGTTCAACATGTTTTGAGCCTCACTTCGGGCTTAAGCGCGCATTTGACAATACTACAACATACTCAATGTCATCCCCCAAATGGGGTCTGGGAGGGTAGAGTATACGCAAATTTTATTTCTGCCTCGTGGAGGTATAGAGGTTGTTTCCGAAAGACTCTCGGCTCAAGTGCAACAGATTAAAGTATTTATGAAAAAGAATGTGACAGTGAAGAAAACATGCCAATTAATAAGGAAAGCAACACATGGCATTCAATGAAAAGAAAGAGTAACAACAATGAAATGATTCAGTAATTGAAAAGGAAATATATAAGACTAATAATGCAACAAACACGGTTCGATATTGGTTTCTAATATTGGGTTAACCGATAACCCATTTAGAATATAATAAATTACTATTTTAATTTTTAGTCATACATAGATATCAAACAAAAAACAACAATATTAATATAATTAATATATATGGACCTTACACAATTAACATTACTCAACTCTGGCCTCTGAATTTACCTTTTAGGTTGTAGTATTACTTTAGTCTTTATTGTTGCAATTTAGTCTGATTTGCTTGTTTCGATGTATGCCTGTGTGCGTAAAATTATTGGACAAATCATATATTTGTTTTGAAAGTATTTTCTTATCAGTTAAAATCGAAAGCTGATAACAAATATCTTATTGGTTCGCTTTTTGGTTTAACATATTTAAAAATCGATAAACCGAACCGATCATACTTAAAATCGAGCTGAATCAATCGATACACACCCCTAATCCGCGACCTCCACCCGTTTGGGGTGCCAATTTGATGGATCAATTTCTTACTCACACCCGTTAATAAGGTGGGAATCATTGTTTTTACTCCCTTCTTGGAAATGATGTGATGGAAGTTGGAACCAATTGCTTTTAATTATCACCTTCGTGTAGTTCACTAAACAATTTTACATATTAGGATTTCTAGATTTGTTTCAACTTCCTGGTTAGTTGCCAATTTTGAGAATTAATTTTTCCAGTCAAAATGAATCTACATTGTTCCATTACATTTCCTTGTCAAATTATTTTCTATGGGAGTATCTATGTAACTTATAGTTTTGTTCATGGAAATTTAATTTTGCAACTTTTCAAGATCAACATCAACAATAACATATCCAGTGGAATCCCATAGGTGGGAGGACAGATTATACCCCTACCTCTTGGAGGTTAGGAGACTATTTCGGGAGGACCCTCGACCCGAGTATAACATATTAGAATAATGAAAAGGAAGACGACAGTGAAGAAACAAAACAGCTAAAGGAAACAAGAGCAACACAAAATAATGCGATAAGCTGAACGGAATAAACATATGATGATGTAATCAAAAACAGAACAACTACAAGAAAACAGCTAAACCCCTCAAAAATCAAGACAACACTCCACACCTACTAACCTTCTTCCCTAATGTGCAACCTCCACACCCTACAAGGTCATAGTTTATATATGGTAGAATTTTTTTCCTTAATCTGCATTCCAATTTCATATTTATTAGCAAGTACATATGTTTCATTTTATGTAACACTATTTCCTTATTAATCTATCAAAAAAAAAAGAAGGGAAAAGACATCAAGTTGCACCCTAAACTTGTTCTAAAAAGTCACTCACACACTCATACTTTACGGGTGATCTTTTACCCTTCTATACTTGTTTAAAATGTAATTATTACCACCCAAAATGCTGATTTGGCAGGTGCATGTGAATCACCCTGTACCATGGGACAGGCTTTGTATGTTTTACGGCGAAAATAACACCACTTCAAATAAGGATTGGGTGTGGGTGGGTGTGTGTAGGTCACCCGTAAAGTACAAGTGTGTTAGTGACTTTTCCGGACAACTTTAGGGTGCAGCCCGTCTTTCTAAAGTTGGAAAAAATTTAACTTTTAACTTCTCAAATTATCTTTATTCTTTAATGACATCATCTTGTAGCCGTGGAAACCTCATGGCATGTTAAAGAACACAAGTTCCAAAAATCGGTCTTAAATCTCTCAAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAAC</genome_strand>
        <mrna_strand>ACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAAGCCTACCATACAATGGTAAATTTTATGTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398779" ref_strand="+" ref_description="SGN-E398779 [TUS-46-K24]">
      <seq>gatatcatggcattcttgatacagtaagtaggcgaaggaggaagctattccatactgcataatattccaattataaagctacataaggttggtctggtaactggttatttgttctgactggaggatctgagaatcaatgggttgcttatgatcctgaagctgataagtggcaccctctgcctaggatacccacgagccaccctgaccaagaacaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgatcaagtaattccccatcaaacagccctgacgacaaatgaagttttccaatttgatcctttcacaaaagagtggagaaatgttgcaagtatgagaacaacacgttctaactttgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="38375" stop="39375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38675" g_stop="39075" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E398779" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38675" e_stop="39075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGC</genome_strand>
        <mrna_strand>GATATCATGGCATTCTTGATACAGTAAGTAGGCGAAGGAGGAAGCTATTCCATACTGCATAATATTCCAATTATAAAGCTACATAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAAGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAACACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCACAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAACACGTTCTAACTTTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256209" ref_strand="+" ref_description="SGN-E256209 [cLEG-37-M8]">
      <seq>atatcattttattcttgaaacagtacgtaggcgatggaggaagcttttccatagtgcagaatattccaattataaagctagagaaggttggtctggtgactggatatttgttctgactggaagatctgaaaatcaatgggttgcttatgatcctgaatctgatccgtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaatcaatttcttctgataggctgtacatatggagcacgtgagcaagtaattccccatcaaacaaccctgactacaaatgaagttgtccaatttgatcctttcagaaaagagtggagaaatgttgcatgtatgagaacagcacgtgctaactttgcctgcagtgttgtctctggtaaagtctatgtagctggagggcgcaacacatcatcgggaggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="38386" stop="39436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38676" g_stop="39136" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E256209" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38676" e_stop="39136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGAC</genome_strand>
        <mrna_strand>ATATCATTTTATTCTTGAAACAGTACGTAGGCGATGGAGGAAGCTTTTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTGACTGGATATTTGTTCTGACTGGAAGATCTGAAAATCAATGGGTTGCTTATGATCCTGAATCTGATCCGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATCAATTTCTTCTGATAGGCTGTACATATGGAGCACGTGAGCAAGTAATTCCCCATCAAACAACCCTGACTACAAATGAAGTTGTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCATGTATGAGAACAGCACGTGCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAAGTCTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201576" ref_strand="+" ref_description="SGN-E201576 [cLEC-11-E21]">
      <seq>aagctattccatagtgcagaatattccaattataaagctagagaaggttggtctggtaactggttatttgttctgactggaggatctgagaatcaatgggttgcttatgatcctgaagctgataggtggcaccctctgcctaggatacccacgagccaccctgaccaagagcaccttggtttctcatgtgcctgtgtcttgaataaatttcttctgattggcggcacatatggagcacgtgatcaagtaattccccatcaaacaggcctgacgacaaatgaaggtttccaatttgatcctttcagaaaagagtggagaaatgttgcaagtatgagaacagcacgttctaactttgcctgcagagttgtctctggtaagggttatgtagctggagggcgcaacacatcatcgggaggaggacttgttcttgctgaagtttataatccactgacagacaagtgggaagacctaccacctctgccaagtccccaaatggattgcatatgcctaccatacaatggtaaattttatgttttaacggaccttgttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="38416" stop="45318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38716" g_stop="39173" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39174" i_stop="44922" i_length="5749">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44923" g_stop="45018" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="554" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E201576" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38716" e_stop="39173"/>
          <exon e_start="44923" e_stop="45018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAAGTATGTTTTTAGAAAATTATGGTATATTTTTTTGAGCAAGCATTACTTTATGAATTTTAAGTATAAAAGGAAATATGGCTTTTTGGATACAAAACTGATCTTAGATTGGGGTATATAAGTAGTTTATCATGCTATTATTTGGATCACAAGTTATCCAATTGTTGTCGAGATTGTTAAATTTATCTTAGGGACTTGGATATGAAATATAGCAGAATATACGAAGTATGGGAATGCCATGTGAATGTTTATCTAGATGTGTGCTGCTTCTAAGTAAATACCTGTTTGTGTTGAGTGTTGACAGAGCTGTTAAAATACGATCCTTTTATTCTTGAGCTGAGTACTGTGTCTTCAAGCAATGAATCTTAGATCTCAAAATGGAATTGCAAGCATACTAACAATGATTTCTGAACCAGACTATTTATCTTCTTATTCTCTTGTTTCTGCGTGTTTTTAGTTTTTCATATCAACATATATCATTTTTTTAATTGTTTAAGGTAGTACATATTAGAATCAGCGACAAGTTCGTCTTGTGAAGTAATTGCAAAGGTGTTGCCATACGAAAAGTGTAGTGACCCCAAAGAGTCAACGATGGCATCAGTGTTGTTTGCAATAGCTATGTTGCACCAATAATAAAGTAAAAGATGTATATTTTTATTTAATACTAATTACAGATTCCGATTTGCTCTCGAAAATTCTACCATTAGGTTCATTCCTTTCTTCCCATATAATCCACCATGTATATTCTAAGTTTTCCTTGCCCCCCAAAATACTAAATAAGAAGCTCCAGATTTGAGACGTGAATCGTCTGGGAAGAATAAGGTGATTCACATCTTCATAATGCTTATGACATAGAACACACCTATTATGAACGTTGACTCCCCTTTTTGAAGGTTTTCATGTGTAAGACAGGCCCTTCTAGCAACTAACCAAGTAAACAGTTGACTTTCATGGTAGCTTTGTTCTGTTGAATGAGAAGGGGACAGGGAGATTGTGCCAGGTAATGGGAGCAATATGAGAGATGTTGTGATTTTGGGTACTGTGGGTGTATAAAGATTAATGAGGTTAAGCTATTCCTAGGATGAACATGGGAAGAATGATTGGGGAAACGAGATTCCGGTGGAGTTCTTGAAGAACACAGGTAAGACAAGAAGGTTTGGAATGGCTGATGGGGGGCTGTTCATATCATTTTAAGACTACAAAATGCTTGAAAAGTGGGGGTGGAGTACAATGATCCTGTTGTACTGAAACAAGGGTGAGATTCATAACTACAAGTTGATATTCATGGGGTATTAAGCTGCTTAGCCACACTATGAAAGTCTTGGAAAGGGTGATGGAGATGAAGATGAGGAGGGGTGTGTCTTTTTTTGAGAACCGGTTCGGATTCATATTGGATGATCGACTATAGAAAGCATTCATGTTGTGAGGAGACTGGGGGAGAGTAAATGGAGAGAAAAAGGGACTTATATATGATATTCATTGACCTAGAAAATGTATATGATAAAGTCGGGGAGGTCCTATGGAGATGCCTTAAGGCTGGAGGTGTATCAATGGCATACATTGGGGTGATGAAGGACATTATGATAGAGCCAAGCCCCGGGTAAGAGCAATGGAAAGAGACTCAGAGTAACACACAAGGATCTTAATACAAGCACTCCACAAATGCTTCCAGGCATATTTGCAATGACCCTTAATTGAAGGGTCTCTTCTGGACCCAGCCTCTCCCCTCTCTGGTAGACTTCCTCCATCGGAGCAGCCATCTAGAACCCAACTTTTTTCATGGACAACAAAATCCTCTTTCGCCTTGGGGCCAAATCTTATGAATCACAGAATCTAAATCCAAATCAGGGATTTGGTATGATTGGATCAGAAGTGCATGATACTACATGAGCAAACTGATACTCAGCAAGGGAGCCATGTCTTGGATATGCAAAAGGCTCAAGGAGGCATCGGAGAACAAAGGAAAGACCTTCAAGTCTTGGAAATGCAAAGATAACACAACCAACATTTTCTTAACACAAAAGTTCAATCAATATGGAAGATTTGTCTCAGTAATTACTGTTAAAGGAAATGTCAGAGCAGCAATTATCCTGTCAGTTAACACATTCAATGAGGGGTGGAATGTTCTAATAGCAAAATAGAAAATTTCATTGATGGAAGTAGTAGTACAAAATTAATCACAAACAAGCAACCTAGACTCCTTAACCAAATCAGAGGGGGGAAGAGTTACAAAGAAATGTTTTTCAAGAACAAATGGACTAAGAGAGACATAGGAAAAAGGCATGCTGGACAGATGCTTAGTGGGGAGCTTTGCAAGAGCTGAAGACGCTCCAACTCGTAATGACATCAGAAGATGGGCTCAACAAACTTGGAATGGAGCCCAGGGAGTTCAAACATAAAAAAGGAGAATAGAGAGAGTATCTGCTCGCGCCGCACTTTTGGGGTTGAAGTTCCCACGTCTGCTCCTCTCTAGCTTCATGCCATTGAAGCGCATGTCCTTCGCATCACGTCACCGCTTAAAAAGGTGGAGCACCCACTTATCTCAACACTGTTGTTTCCTTCTTCATTCCTTAAAACAAATAATGGAAATCCCCAACCATGCACTAGATCAAAACAATTATTACATGAACCATCACTATTCAACTATCCTCCTATAAAGATTTATTGGTCATTTGGGCCCTATTGGACAAAGTTATTGATATCATCCTAGCATTTAGTTTAAGTTTTCTTATCTATATGTAGCAATAGTAAAATTGTGTCCTCCATCCAAATTGGTTCGTACAAAATACCCTTACCTGGCAATAGTCGAATCTCTTTACTTTGCAACTTTATCCTTATGTCTTGGTTTCACAATGATTTTAGTTTCTATTTAATCCCTCTTGTGTCGTGTTGTTAGGCATTTTCCCTATCCATGTAGTCTCTTGCCTACGACGACTTATTTGAATTTTATGCCTCATGGACTAGTATCTACCCTTTGTAACACCGCTTTAGGGTGCCTATACAACAATAGCAATCAAGTGTTATCAAAAGAAAAAAATCTCTAAAGTTTGTTACGGGAGAAACAAATACAATTATATATGTTTAGTCCTAGACTAATAAGTATAAGCGTGAATGACAAATATAAGAACAAAGAAACTGAAAAAAAAATACGATAAAATGAAATATCAATTGCTTAGTGTCTCCTTTTCACAAGAGGTTCATTGGCAAAGAGAAGTATGTCTTAGAACATTGATGACGAAACTAAAATGTACTTCAAGTGAGGCAAAGCGTTCAACATGTTTTGAGCCTCACTTCGGGCTTAAGCGCGCATTTGACAATACTACAACATACTCAATGTCATCCCCCAAATGGGGTCTGGGAGGGTAGAGTATACGCAAATTTTATTTCTGCCTCGTGGAGGTATAGAGGTTGTTTCCGAAAGACTCTCGGCTCAAGTGCAACAGATTAAAGTATTTATGAAAAAGAATGTGACAGTGAAGAAAACATGCCAATTAATAAGGAAAGCAACACATGGCATTCAATGAAAAGAAAGAGTAACAACAATGAAATGATTCAGTAATTGAAAAGGAAATATATAAGACTAATAATGCAACAAACACGGTTCGATATTGGTTTCTAATATTGGGTTAACCGATAACCCATTTAGAATATAATAAATTACTATTTTAATTTTTAGTCATACATAGATATCAAACAAAAAACAACAATATTAATATAATTAATATATATGGACCTTACACAATTAACATTACTCAACTCTGGCCTCTGAATTTACCTTTTAGGTTGTAGTATTACTTTAGTCTTTATTGTTGCAATTTAGTCTGATTTGCTTGTTTCGATGTATGCCTGTGTGCGTAAAATTATTGGACAAATCATATATTTGTTTTGAAAGTATTTTCTTATCAGTTAAAATCGAAAGCTGATAACAAATATCTTATTGGTTCGCTTTTTGGTTTAACATATTTAAAAATCGATAAACCGAACCGATCATACTTAAAATCGAGCTGAATCAATCGATACACACCCCTAATCCGCGACCTCCACCCGTTTGGGGTGCCAATTTGATGGATCAATTTCTTACTCACACCCGTTAATAAGGTGGGAATCATTGTTTTTACTCCCTTCTTGGAAATGATGTGATGGAAGTTGGAACCAATTGCTTTTAATTATCACCTTCGTGTAGTTCACTAAACAATTTTACATATTAGGATTTCTAGATTTGTTTCAACTTCCTGGTTAGTTGCCAATTTTGAGAATTAATTTTTCCAGTCAAAATGAATCTACATTGTTCCATTACATTTCCTTGTCAAATTATTTTCTATGGGAGTATCTATGTAACTTATAGTTTTGTTCATGGAAATTTAATTTTGCAACTTTTCAAGATCAACATCAACAATAACATATCCAGTGGAATCCCATAGGTGGGAGGACAGATTATACCCCTACCTCTTGGAGGTTAGGAGACTATTTCGGGAGGACCCTCGACCCGAGTATAACATATTAGAATAATGAAAAGGAAGACGACAGTGAAGAAACAAAACAGCTAAAGGAAACAAGAGCAACACAAAATAATGCGATAAGCTGAACGGAATAAACATATGATGATGTAATCAAAAACAGAACAACTACAAGAAAACAGCTAAACCCCTCAAAAATCAAGACAACACTCCACACCTACTAACCTTCTTCCCTAATGTGCAACCTCCACACCCTACAAGGTCATAGTTTATATATGGTAGAATTTTTTTCCTTAATCTGCATTCCAATTTCATATTTATTAGCAAGTACATATGTTTCATTTTATGTAACACTATTTCCTTATTAATCTATCAAAAAAAAAAGAAGGGAAAAGACATCAAGTTGCACCCTAAACTTGTTCTAAAAAGTCACTCACACACTCATACTTTACGGGTGATCTTTTACCCTTCTATACTTGTTTAAAATGTAATTATTACCACCCAAAATGCTGATTTGGCAGGTGCATGTGAATCACCCTGTACCATGGGACAGGCTTTGTATGTTTTACGGCGAAAATAACACCACTTCAAATAAGGATTGGGTGTGGGTGGGTGTGTGTAGGTCACCCGTAAAGTACAAGTGTGTTAGTGACTTTTCCGGACAACTTTAGGGTGCAGCCCGTCTTTCTAAAGTTGGAAAAAATTTAACTTTTAACTTCTCAAATTATCTTTATTCTTTAATGACATCATCTTGTAGCCGTGGAAACCTCATGGCATGTTAAAGAACACAAGTTCCAAAAATCGGTCTTAAATCTCTCAAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCT</genome_strand>
        <mrna_strand>AAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGGCCTGACGACAAATGAAGGTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGAGTTGTCTCTGGTAAGGGTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATATGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542300" ref_strand="+" ref_description="SGN-E542300 [TUS-63-I14]">
      <seq>aaaagtagtcatgtaaattgaaatgtgcatactatttttgagagaaaacagtacttccattaatctttgaagcagcaaaaaaactttataagaaaagcttttaagaggcatatgcgacatatactatatttatgaaatgaaaaacacttcccaatttaaaagtaaaataagaagaaaaggttaatgcaagtataagggtgatgaaaacatggactcaaaatgtgtatcagtggaacgtatatctagtggaaataaattttgatgctttgactacatttgccgttgggtcgtagttctttagaaacctatgtaccttgttattttatcttggaaacgattccttgttgcttctaacttctactctgtttttctctttgaagcaaaaggatggtcggatatttaatttgacagaattttaagagaagaatgtttatgttttatcctatactgtttttcttaatattttaaaatgttgcaggtgggaagacctaccacctctgccaagtccccaaatggattgcataggcctaccatacaatggtaaattttatgttttaacggaccttgttgggctgttagagcaggagacatctgttgtttttgatccatccgatgaaacatggctaagtgtaaatgatacttggccgttttcaagggccatgcatttgggaattcaggtacttgatggtggtcatatatgcacagttgtagattgggggtgggagcgccattgaaactagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="44146" stop="45485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44446" g_stop="45186" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E542300" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44446" e_stop="45186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGC-AAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATT-GGGGTGGGAGCGCCATTGAAACTAGGGA</genome_strand>
        <mrna_strand>AAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATTGGGGGTGGGAGCGCCATTGAAACTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300279" ref_strand="+" ref_description="SGN-E300279 [cLEW-17-I11]">
      <seq>aaagtagtcatgtaaattgaaatgtgcatactatttttgagagaaaacagtacttccattaatctttgaagcagcaaaaaaactttataagaaaagcttttaagaggcatatgcgacatatactatatttatgaaatgaaaaacacttcccaatttaaaagtaaaataagaagaaaaggttaatgcaagtataagggtgatgaaaacatggactcaaaatgtgtatcagtggaacgtatatctagtggaaataaattttgatgctttgactacatttgccgttgggtcgtagttctttagaaacctatgtaccttgttattttatcttggaaacgattccttgttgcttctaacttctactctgtttttctctttgaagcaaaaggatggtcggatatttaatttgacagaattttaagagaagaatgtttatgttttatcctatactgtttttcttaatattttaaaatgttgcaggtgggaagacctaccacctctgccaagtccccaaatggattgcataggcctaccatacaatggtaaattttatgttttaacggaccttgttgggctgttagagcaagagacatctgttgtttttgatccatccgatgaaacatggctaagtgtaaatgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="44147" stop="45385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44447" g_stop="45085" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E300279" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44447" e_stop="45085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGC-AAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACT</genome_strand>
        <mrna_strand>AAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAAGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203560" ref_strand="+" ref_description="SGN-E203560 [cLEC-15-D14]">
      <seq>cccaaatggattgcataggcctaccatacaatggtaaattttatgttttaacggaccttgttgggctgttagagcaggagacatctgttgtttttgatccatccgatgaaacatggctaagtgtaaatgatacttggccgttttcaagggccatgcatttgggaattcaggtacttgatggtggtcatatatgcacagttgtagattggggtgggagcgccattgaaactagggatgttgataacacggagtggcatcgtagaggactggtacctcctgtggttctacctgaccatccccggcctctagaggtctttgattatggatttgttgcactgagaaatgaaatttatgttttgggaggaagagtgctgcgatgggaggaatctgggaccgggaagtttaacattgtgaagttgagcacagttagagtgtgcaacccactgagtttacctttaaggtggagggagattagaccaatgtgtgagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="44652" stop="45742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44952" g_stop="45442" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E203560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44952" e_stop="45442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATTGGGGTGGGAGCGCCATTGAAACTAGGGATGTTGATAACACGGAGTGGCATCGTAGAGGACTGGTACCTCCTGTGGTTCTACCTGACCATCCCCGGCCTCTAGAGGTCTTTGATTATGGATTTGTTGCACTGAGAAATGAAATTTATGTTTTGGGAGGAAGAGTGCTGCGATGGGAGGAATCTGGGACCGGGAAGTTTAACATTGTGAAGTTGAGCACAGTTAGAGTGTGCAACCCACTGAGTTTACCTTTAAGGTGGAGGGAGATTAGACCAATGTGTGAGCCT</genome_strand>
        <mrna_strand>CCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATTGGGGTGGGAGCGCCATTGAAACTAGGGATGTTGATAACACGGAGTGGCATCGTAGAGGACTGGTACCTCCTGTGGTTCTACCTGACCATCCCCGGCCTCTAGAGGTCTTTGATTATGGATTTGTTGCACTGAGAAATGAAATTTATGTTTTGGGAGGAAGAGTGCTGCGATGGGAGGAATCTGGGACCGGGAAGTTTAACATTGTGAAGTTGAGCACAGTTAGAGTGTGCAACCCACTGAGTTTACCTTTAAGGTGGAGGGAGATTAGACCAATGTGTGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740134" ref_strand="+" ref_description="SGN-E740134 [LC20AH12]">
      <seq>tagaatcatccaaattctcgaattaggtatggagagaggaagaggacagtggggatcagtatttcgtggtatgattcctctgctagggctgcatacgctgagtgagtattccagattagacagaaaaccccctattactgctgcacttcttgccgctaataccattatttacttgaggcccaaatttattcatcctttccttcccacaatcgatcaagtttggtttaatcctcaccttattctcaagtacacagacctcaagcgattcttcctgtcgccgttcttccacgtaaatgaatctcacctggtgtacaatatgctttcacttttgtggaagggtattcaactggagacatcgatgggtagtgcagagtttgcatcaatggttgcaaccttagttgctatgtcccaaggtgttacactgttgcttgcaaaatcacttctgctgttctttgattacgagagaccctactataatgaatactctgtgggtttttctggtgtcctcttcgccatgaaagttatcgtcaattcacaatcagatgagtatacctctgtacatggacttatggttcctactcgttatgctgcctgggcagagcttgttctcgtacaaatgtttgtccctggtgtctcattccttggccaccttgggggaatactagctggccttctgtatttgcaattaaaagcgtcatattcaggtctgaatccagttagacaattcatgagaggttttagccatgctctgagctggcctttaagattagtgaagagcttatttcgacatcgacctagaattactgggaagaggaactgctggtgcgaggattgcacgagatacacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="49956" stop="47379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49656" g_stop="49410" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49409" i_stop="48281" i_length="1129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48280" g_stop="47679" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="850" r_length="603" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E740134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49656" e_stop="49410"/>
          <exon e_start="48280" e_stop="47679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAGGTAATCAACCCTTTTTGCCTTTTTTGATTTTTACTGATGATTTTGTTTCTTGCTGGACACCATAGGTGACTAAAGTTTGATTCTTTTGTTGATTTTCTAGACGTTACTTAGCTTTTGGTATGGGTAATTGATACTAATATTATGGGTGTGTTTGGTACAAAGGAAAGCGTTTTTCTTACTAATTTTATAGTGTTTGGTAGGTAAGCCAGAAAATATTATTCGAAGAGCATTTATATGTCATATAACAAATCACTATGGGCGCAATGACACCGATGGGGAGTGGGCGTTTCTGGGTGGGGGTTGCAGGGATTGGATAGAAAGAAGACAATAAACTTGACTACACCTTGTTTTCCTTATTTCCATTAGAGAAGTCATTTTTCTCATTGTCAAGGAACTTGTTTGTCAAGCGAACATTTTGACCAATTAGGAAAATTGGAAATCAAACACGCCTTGTGTCTGAAAATTTTACTAGATTACAACCACTATGTTGTTTGATCATAGCAGAGAAGAACTGCTATTGCATATATAAAATAATTTTTTTTTTTTTTTTGTAAAATAAGCTTAGCATGTGTAAAGGTTTTCTTATATGTTTATGAACTTATATGGCTTCTATCATGGCTTAAAACACCAATTCCCTCTTTGAAGATAAAAGAAATTGCAGTTTTCTGCCCTCTAGCTGTAAAACTCTCGATAGAGTTGCGGAGGATACAAATGATAGAGACCAAAGGTCTTGGCTCTGTGCGAACTTGTTGGTTATGATATTCATTGGATGGATATCTGAGTTTTATGTGGACTCATGAGTTTGTTCATAAAGTTGCAATCTAGTGTTGCTTGGACTCTTCAAAATGTCGATGGGTGCGTATATTGGACTCCAAAAGTAGTGCATTTTGGAGAATTTGACATGGATGCAGACACATTTTTGGAGAGTTCGAGCAACATAGATTGGAAGCAAGTGAGAGAAGTTGATTTATCACATTTCCATATTGTTGGTTCCCTTTGAGTAGATACTGCTTAGTAAGCAATATGTGCCATATTGACCTATTTTCTAGAGCTTTAACTGTTATTTATAGTTTTGGGAGATTGAATTTCAAACTATTATGTTGGCCTTACACTTGCTTTGCTGATGCAGTACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGCAATTAAAAGCGTCATATTCAGGTCTGAATCCAGTTAGACAATTCATGAGAGGTTTTAGCCATGCTCTGAGCTGGCCTTTAAGATTAGTGAAGAGCTTATTTCGACATCGACCTAGAATTACTGGG-AGAGGAACTGCTGGTGCGAGGATTGCACGAGATACACTTCA</genome_strand>
        <mrna_strand>TAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGCAATTAAAAGCGTCATATTCAGGTCTGAATCCAGTTAGACAATTCATGAGAGGTTTTAGCCATGCTCTGAGCTGGCCTTTAAGATTAGTGAAGAGCTTATTTCGACATCGACCTAGAATTACTGGGAAGAGGAACTGCTGGTGCGAGGATTGCACGAGATACACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740262" ref_strand="+" ref_description="SGN-E740262 [LC20CH12]">
      <seq>tagaatcatccaaattctcgaattaggtatggagagaggaagaggacagtggggatcagtatttcgtggtatgattcctctgctagggctgcatacgctgagtgagtattccagattagacagaaaaccccctattactgctgcacttcttgccgctaataccattatttacttgaggcccaaatttattcatcctttccttcccacaatcgatcaagtttggtttaatcctcaccttattctcaagtacacagacctcaagcgattcttcctgtcgccgttcttccacgtaaatgaatctcacctggtgtacaatatgctttcacttttgtggaagggtattcaactggagacatcgatgggtagtgcagagtttgcatcaatggttgcaaccttagttgctatgtcccaaggtgttacactgttgcttgcaaaatcacttctgctgttctttgattacgagagaccctactataatgaatactctgtgggtttttctggtgtcctcttcgccatgaaagttatcgtcaattcacaatcagatgagtatacctctgtacatggacttatggttcctactcgttatgctgcctgggcagagcttgttctcgtacaaatgtttgtccctggtgtctcattccttggccaccttgggggaatactagctggccttctgtatttgcaattaaaagcgtcatattcaggtctgaatccagttagacaattcatgagaggttttagccatgctctgagctggcctttaagattagtgaagagcttatttcgacatcgacctaaaaattactgggagaggaactgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="49956" stop="47405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49656" g_stop="49410" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49409" i_stop="48281" i_length="1129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48280" g_stop="47705" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="824" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E740262" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49656" e_stop="49410"/>
          <exon e_start="48280" e_stop="47705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAGGTAATCAACCCTTTTTGCCTTTTTTGATTTTTACTGATGATTTTGTTTCTTGCTGGACACCATAGGTGACTAAAGTTTGATTCTTTTGTTGATTTTCTAGACGTTACTTAGCTTTTGGTATGGGTAATTGATACTAATATTATGGGTGTGTTTGGTACAAAGGAAAGCGTTTTTCTTACTAATTTTATAGTGTTTGGTAGGTAAGCCAGAAAATATTATTCGAAGAGCATTTATATGTCATATAACAAATCACTATGGGCGCAATGACACCGATGGGGAGTGGGCGTTTCTGGGTGGGGGTTGCAGGGATTGGATAGAAAGAAGACAATAAACTTGACTACACCTTGTTTTCCTTATTTCCATTAGAGAAGTCATTTTTCTCATTGTCAAGGAACTTGTTTGTCAAGCGAACATTTTGACCAATTAGGAAAATTGGAAATCAAACACGCCTTGTGTCTGAAAATTTTACTAGATTACAACCACTATGTTGTTTGATCATAGCAGAGAAGAACTGCTATTGCATATATAAAATAATTTTTTTTTTTTTTTTGTAAAATAAGCTTAGCATGTGTAAAGGTTTTCTTATATGTTTATGAACTTATATGGCTTCTATCATGGCTTAAAACACCAATTCCCTCTTTGAAGATAAAAGAAATTGCAGTTTTCTGCCCTCTAGCTGTAAAACTCTCGATAGAGTTGCGGAGGATACAAATGATAGAGACCAAAGGTCTTGGCTCTGTGCGAACTTGTTGGTTATGATATTCATTGGATGGATATCTGAGTTTTATGTGGACTCATGAGTTTGTTCATAAAGTTGCAATCTAGTGTTGCTTGGACTCTTCAAAATGTCGATGGGTGCGTATATTGGACTCCAAAAGTAGTGCATTTTGGAGAATTTGACATGGATGCAGACACATTTTTGGAGAGTTCGAGCAACATAGATTGGAAGCAAGTGAGAGAAGTTGATTTATCACATTTCCATATTGTTGGTTCCCTTTGAGTAGATACTGCTTAGTAAGCAATATGTGCCATATTGACCTATTTTCTAGAGCTTTAACTGTTATTTATAGTTTTGGGAGATTGAATTTCAAACTATTATGTTGGCCTTACACTTGCTTTGCTGATGCAGTACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGCAATTAAAAGCGTCATATTCAGGTCTGAATCCAGTTAGACAATTCATGAGAGGTTTTAGCCATGCTCTGAGCTGGCCTTTAAGATTAGTGAAGAGCTTATTTCGACATCGACCT-AGAATTACTGGGAGAGGAACTGCTGGT</genome_strand>
        <mrna_strand>TAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGCAATTAAAAGCGTCATATTCAGGTCTGAATCCAGTTAGACAATTCATGAGAGGTTTTAGCCATGCTCTGAGCTGGCCTTTAAGATTAGTGAAGAGCTTATTTCGACATCGACCTAAAAATTACTGGGAGAGGAACTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332132" ref_strand="+" ref_description="SGN-E332132 [cTOD-16-B21]">
      <seq>ttcgactttgcagtagaatcatccaaattctcgaattaggtatggagagaggaagaggacagtggggatcagtatttcgtggtatgattcctctgctagggctgcatacgctgagtgagtattccagattagacagaaaaccccctattactgctgcacttcttgccgctaataccattatttacttgaggcccaaatttattcatcctttccttcccacaatcgatcaagtttggtttaatcctcaccttattctcaagtacacagacctcaagcgattcttcctgtcgccgttcttccacgtaaatgaatctcacctggtgtacaatatgctttcacttttgtggaagggtattcaactggagacatcgatgggtagtgcagagtttgcatcaatggttgcaaccttagttgctatgtcccaaggtgttacactgttgcttgcaaaatcacttctgctgttctttgattacgagagaccctactataatgaatactctgtgggtttttctggtgtcctcttcgccatgaaagttatcgtcaattcacaatcagatgagtatacctctgtacatggacttatggttcctactcgttatgctgcctgggcagagcttgttctcgtacaaatgtttgtccctggtgtctcattccttggccaccttggggggatactagctggccttctgtatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="49969" stop="47545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49669" g_stop="49410" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49409" i_stop="48281" i_length="1129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48280" g_stop="47845" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="696" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E332132" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49669" e_stop="49410"/>
          <exon e_start="48280" e_stop="47845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACTTTGCAGTAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAGGTAATCAACCCTTTTTGCCTTTTTTGATTTTTACTGATGATTTTGTTTCTTGCTGGACACCATAGGTGACTAAAGTTTGATTCTTTTGTTGATTTTCTAGACGTTACTTAGCTTTTGGTATGGGTAATTGATACTAATATTATGGGTGTGTTTGGTACAAAGGAAAGCGTTTTTCTTACTAATTTTATAGTGTTTGGTAGGTAAGCCAGAAAATATTATTCGAAGAGCATTTATATGTCATATAACAAATCACTATGGGCGCAATGACACCGATGGGGAGTGGGCGTTTCTGGGTGGGGGTTGCAGGGATTGGATAGAAAGAAGACAATAAACTTGACTACACCTTGTTTTCCTTATTTCCATTAGAGAAGTCATTTTTCTCATTGTCAAGGAACTTGTTTGTCAAGCGAACATTTTGACCAATTAGGAAAATTGGAAATCAAACACGCCTTGTGTCTGAAAATTTTACTAGATTACAACCACTATGTTGTTTGATCATAGCAGAGAAGAACTGCTATTGCATATATAAAATAATTTTTTTTTTTTTTTTGTAAAATAAGCTTAGCATGTGTAAAGGTTTTCTTATATGTTTATGAACTTATATGGCTTCTATCATGGCTTAAAACACCAATTCCCTCTTTGAAGATAAAAGAAATTGCAGTTTTCTGCCCTCTAGCTGTAAAACTCTCGATAGAGTTGCGGAGGATACAAATGATAGAGACCAAAGGTCTTGGCTCTGTGCGAACTTGTTGGTTATGATATTCATTGGATGGATATCTGAGTTTTATGTGGACTCATGAGTTTGTTCATAAAGTTGCAATCTAGTGTTGCTTGGACTCTTCAAAATGTCGATGGGTGCGTATATTGGACTCCAAAAGTAGTGCATTTTGGAGAATTTGACATGGATGCAGACACATTTTTGGAGAGTTCGAGCAACATAGATTGGAAGCAAGTGAGAGAAGTTGATTTATCACATTTCCATATTGTTGGTTCCCTTTGAGTAGATACTGCTTAGTAAGCAATATGTGCCATATTGACCTATTTTCTAGAGCTTTAACTGTTATTTATAGTTTTGGGAGATTGAATTTCAAACTATTATGTTGGCCTTACACTTGCTTTGCTGATGCAGTACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGC</genome_strand>
        <mrna_strand>TTCGACTTTGCAGTAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGGATACTAGCTGGCCTTCTGTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276523" ref_strand="+" ref_description="SGN-E276523 [cLEN-17-M3]">
      <seq>aaagattgatttcttagtattcgactttgcagtataatcatccaaattctctaattaagtatggagagaggaagaggacactggggatcagtatttcgtggtatgattcctctgctaaggctgcatacgctgagtgagtattccagattagacagaaaaccccctattactgctgcacttcttgccgctaataccattatttacttgaggcccaaatttattcatcctttccttcccacaatcgatcaagtttggtttaatcctcaccttattctcaagtacacagacctgaagcgattcttcctgtcgccgttcttccacgtaaatgaatctcacctggtgtacaatatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="49988" stop="47906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49688" g_stop="49410" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49409" i_stop="48281" i_length="1129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48280" g_stop="48206" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="354" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E276523" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49688" e_stop="49410"/>
          <exon e_start="48280" e_stop="48206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGATTTCAGAGTATTCGACTTTGCAGTAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAGGTAATCAACCCTTTTTGCCTTTTTTGATTTTTACTGATGATTTTGTTTCTTGCTGGACACCATAGGTGACTAAAGTTTGATTCTTTTGTTGATTTTCTAGACGTTACTTAGCTTTTGGTATGGGTAATTGATACTAATATTATGGGTGTGTTTGGTACAAAGGAAAGCGTTTTTCTTACTAATTTTATAGTGTTTGGTAGGTAAGCCAGAAAATATTATTCGAAGAGCATTTATATGTCATATAACAAATCACTATGGGCGCAATGACACCGATGGGGAGTGGGCGTTTCTGGGTGGGGGTTGCAGGGATTGGATAGAAAGAAGACAATAAACTTGACTACACCTTGTTTTCCTTATTTCCATTAGAGAAGTCATTTTTCTCATTGTCAAGGAACTTGTTTGTCAAGCGAACATTTTGACCAATTAGGAAAATTGGAAATCAAACACGCCTTGTGTCTGAAAATTTTACTAGATTACAACCACTATGTTGTTTGATCATAGCAGAGAAGAACTGCTATTGCATATATAAAATAATTTTTTTTTTTTTTTTGTAAAATAAGCTTAGCATGTGTAAAGGTTTTCTTATATGTTTATGAACTTATATGGCTTCTATCATGGCTTAAAACACCAATTCCCTCTTTGAAGATAAAAGAAATTGCAGTTTTCTGCCCTCTAGCTGTAAAACTCTCGATAGAGTTGCGGAGGATACAAATGATAGAGACCAAAGGTCTTGGCTCTGTGCGAACTTGTTGGTTATGATATTCATTGGATGGATATCTGAGTTTTATGTGGACTCATGAGTTTGTTCATAAAGTTGCAATCTAGTGTTGCTTGGACTCTTCAAAATGTCGATGGGTGCGTATATTGGACTCCAAAAGTAGTGCATTTTGGAGAATTTGACATGGATGCAGACACATTTTTGGAGAGTTCGAGCAACATAGATTGGAAGCAAGTGAGAGAAGTTGATTTATCACATTTCCATATTGTTGGTTCCCTTTGAGTAGATACTGCTTAGTAAGCAATATGTGCCATATTGACCTATTTTCTAGAGCTTTAACTGTTATTTATAGTTTTGGGAGATTGAATTTCAAACTATTATGTTGGCCTTACACTTGCTTTGCTGATGCAGTACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTT</genome_strand>
        <mrna_strand>AAAGATTGATTTCTTAGTATTCGACTTTGCAGTATAATCATCCAAATTCTCTAATTAAGTATGGAGAGAGGAAGAGGACACTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAAGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGACCTGAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546071" ref_strand="+" ref_description="SGN-E546071 [TUS-69-D23]">
      <seq>gctttctcatttcctccgcctcattcttcccttttatgtcctttaattctataatcattcatatcttactcacgtttcttgtaattcatccatgatgacgtctttctctacaacaaaagttttgcaacctttgccccttaactctactagatctgctgaaaaccctcttttggctcaatctctaaagggtagctcctgttttcttggatcatcttctcataatcttttcctcaataagactttccatcctcattaatcacaacgccgatcaaataatgatattgtcaccgtttctgatgttgttaaggaaaagaaatcaaagtccaaatcttctatctccaatctagtatatcttgatttttccctgtttgtttgttgattttgtctatgcaagctcgatttttcatttgggtcatgctcaatttgttactttaggagtaactttaatcttaatttcttttttattgtgatttagtgcttgtttgtttagattattcatatgaaaattctgttgtttgctaaagattcatactttttggatcattaagtcttttgagtgttcttcattttgatttagtgcttatttttgaatgtcatatgacattgtagttgtttgcattattcggcttgtttgtgattttgttaaatagttgtgtttgttggtccatcccaattttgataattttggcatttgcaagctcaatttttatttttgtcatgcagcttttgaccagtgttgttattgtggtaatttagtgtttaatcttcttangatttctcttatagcatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="54818" stop="53423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54518" g_stop="53723" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E546071" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54518" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCATTTCCTCCGCCTAATTTTTCCCTTTTTATGTCTTTTAATTATATAATCATTCATGTCTTACTCACATTTCTTGTAATTCATCCATGACGACGTCATTCTCTGCAACAAAAGTTTTGCAACCTTTGCCCCTTTACTCTACTACATCTGCTGAAAACCCCCTTTTGGCTCAATCTCTAGAGGGTAGCTCTTCTTTTCTTGGACAATCTTCTCATAATCTTTCCCTCAATAAGAATTTCTATCCTCATTAATCACAATGCCGATCCAATAATGATGTTGTCGCCGTTTCTGATGTTGTTAATGAAAAGAAATCGAAGTCCAAATCTTCTATCTCCAATCTAGTATATCTTGATTTTTCCCTGTTTGTTTGTTGATTTTGTCTATTCAAGCTCGATTTTTCATTTGGGTCATGCTCAATTTGTTACTTTAGGAGTAACTTTAATCTTCATGTTTTTTTTATAGTGATTTAGTGCTTGTTTGTTTAGATTATTCGTATGAAAATTCTGTTGTCTGCTAAAGATTCATCCTTTTTTGGATCGCTAAGTCTTTTGAGTGTTCTTCATTTTGATTTAGTGCTTATTTTTGAATGCCATATGACATTGTAGTTGTTTGCATTATTCGTCTTGTTTGTGATTTTGTTAAATAGTTGTGTTTGTTGGTCCATCCCAATTTTGATAATTTTGGCATTTGCAAGCTCAGTTTTTATTTTTGTCATGCAACTTTTGACCCAATATTTGTTATTGTGGTAATTTAGTGTTTAATATTCTTATAATTTATCTTATAGCATGTA</genome_strand>
        <mrna_strand>GCTTTCTCATTTCCTCCGCCTCATTCTTCCC-TTTTATGTCCTTTAATTCTATAATCATTCATATCTTACTCACGTTTCTTGTAATTCATCCATGATGACGTCTTTCTCTACAACAAAAGTTTTGCAACCTTTGCCCCTTAACTCTACTAGATCTGCTGAAAACCCTCTTTTGGCTCAATCTCTAAAGGGTAGCTCCTGTTTTCTTGGATCATCTTCTCATAATCTTTTCCTCAATAAGACTTTCCATCCTCATTAATCACAACGCCGATCAAATAATGATATTGTCACCGTTTCTGATGTTGTTAAGGAAAAGAAATCAAAGTCCAAATCTTCTATCTCCAATCTAGTATATCTTGATTTTTCCCTGTTTGTTTGTTGATTTTGTCTATGCAAGCTCGATTTTTCATTTGGGTCATGCTCAATTTGTTACTTTAGGAGTAACTTTAATCTTAATTTCTTTTTTATTGTGATTTAGTGCTTGTTTGTTTAGATTATTCATATGAAAATTCTGTTGTTTGCTAAAGATTCATAC-TTTTTGGATCATTAAGTCTTTTGAGTGTTCTTCATTTTGATTTAGTGCTTATTTTTGAATGTCATATGACATTGTAGTTGTTTGCATTATTCGGCTTGTTTGTGATTTTGTTAAATAGTTGTGTTTGTTGGTCCATCCCAATTTTGATAATTTTGGCATTTGCAAGCTCAATTTTTATTTTTGTCATGCAGCTTTTGA-CCAGT-GTTGTTATTGTGGTAATTTAGTGTTTAATCTTCTTANGATTTCTCTTATAGCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357221" ref_strand="+" ref_description="SGN-E357221 [cLHT-17-J7]">
      <seq>ctttctcatttcctccgcctcattcttcccttttatgtcctttaattctataatcattcatatcttactcacgtttcttgtaattcatccatgatgacgtctttctctacaacaaaagttttgcaacctttgccccttaactctactagatctgctgaaaaccctcttttggctcaatctctaaagggtagctcctgttttcttggatcatcttctcataatcttttcctcaataagactttccatcctcattaatcacaacgccgatcaaataatgatattgtcaccgtttctgatgttgttaaggaaaagaaatcaaagtccaaatcttctatctccaatctagtatatcttgattgttccctgtttgtttgttgattttgtctatgcaagctcgatttttcatttgggtcatgctcaatttgttactttaggagtaactctaatcttaatttcttttttattgtgatttagcgcttgtttgtttagattattcatatgaaaattctgttgtttgctaaagattcatactgtttggatcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="54817" stop="53671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54517" g_stop="53971" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E357221" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54517" e_stop="53971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATTTCCTCCGCCTAATTTTTCCCTTTTTATGTCTTTTAATTATATAATCATTCATGTCTTACTCACATTTCTTGTAATTCATCCATGACGACGTCATTCTCTGCAACAAAAGTTTTGCAACCTTTGCCCCTTTACTCTACTACATCTGCTGAAAACCCCCTTTTGGCTCAATCTCTAGAGGGTAGCTCTTCTTTTCTTGGACAATCTTCTCATAATCTTTCCCTCAATAAGAATTTCTATCCTCATTAATCACAATGCCGATCCAATAATGATGTTGTCGCCGTTTCTGATGTTGTTAATGAAAAGAAATCGAAGTCCAAATCTTCTATCTCCAATCTAGTATATCTTGATTTTTCCCTGTTTGTTTGTTGATTTTGTCTATTCAAGCTCGATTTTTCATTTGGGTCATGCTCAATTTGTTACTTTAGGAGTAACTTTAATCTTCATGTTTTTTTTATAGTGATTTAGTGCTTGTTTGTTTAGATTATTCGTATGAAAATTCTGTTGTCTGCTAAAGATTCATCCTTTTTTGGATCGCTA</genome_strand>
        <mrna_strand>CTTTCTCATTTCCTCCGCCTCATTCTTCCC-TTTTATGTCCTTTAATTCTATAATCATTCATATCTTACTCACGTTTCTTGTAATTCATCCATGATGACGTCTTTCTCTACAACAAAAGTTTTGCAACCTTTGCCCCTTAACTCTACTAGATCTGCTGAAAACCCTCTTTTGGCTCAATCTCTAAAGGGTAGCTCCTGTTTTCTTGGATCATCTTCTCATAATCTTTTCCTCAATAAGACTTTCCATCCTCATTAATCACAACGCCGATCAAATAATGATATTGTCACCGTTTCTGATGTTGTTAAGGAAAAGAAATCAAAGTCCAAATCTTCTATCTCCAATCTAGTATATCTTGATTGTTCCCTGTTTGTTTGTTGATTTTGTCTATGCAAGCTCGATTTTTCATTTGGGTCATGCTCAATTTGTTACTTTAGGAGTAACTCTAATCTTAATTTCTTTTTTATTGTGATTTAGCGCTTGTTTGTTTAGATTATTCATATGAAAATTCTGTTGTTTGCTAAAGATTCATAC-TGTTTGGATCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737007" ref_strand="+" ref_description="SGN-E737007 [LC08AE11]">
      <seq>catttgatgaatctttccccttgaatttcctattcatctcccttgaagatctggaggctccagtcatgttgcgtcctcacttggctcgctcctcctctttactgttcctcttcattttgttgctgagtcatagttcacttggttctacgggtggaaatcgtaaaacagggaagtcatcggtattttcgttatttaaccttaaagatagaagcaaattctggagcgagtctgttattcatggtggtgattttgatgatctggaagcatctaaaccggaaaaattgagtgttctcaattacacccaggcaggtaatatagcaaattatttaaagcttctggaagttgattccatgtaccttccggtacctgtgaatttcatttttattggatttgaagggaagggtaatcaagaatttaatctacagccactggaactagaacgctggttttcaaagattgatcacatccttgaacatacaaggattcctcaagtgggagaagttttgacaccattttacaaaactagcattgacagagaacagcgtcaccatctgcctctaataagccacataaactacaatttctctgttcatgccattcaaatgggtgaaaaggtcacatccatctttgagcgtgccattgatatctttggccgcaaggatgatatgtctgataacagggatgatggaactgttctgtggcaagttgatgtggatatgatggatgttctctacaccagtctcgtggagtatttacaactggaagatgcctataacatcttcattttaaatcccaagcgcaatggaaaaagagtcaaatatggatacaggcaagggttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="63507" stop="71873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63807" g_stop="63925" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63926" i_stop="65178" i_length="1253">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65179" g_stop="65305" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="246" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65306" i_stop="65400" i_length="95">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65401" g_stop="65463" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65464" i_stop="70685" i_length="5222">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70686" g_stop="70787" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="411" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70788" i_stop="70934" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70935" g_stop="71103" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="580" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71104" i_stop="71206" i_length="103">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71207" g_stop="71305" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="679" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71306" i_stop="71422" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71423" g_stop="71572" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="829" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E737007" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63807" e_stop="63925"/>
          <exon e_start="65179" e_stop="65305"/>
          <exon e_start="65401" e_stop="65463"/>
          <exon e_start="70686" e_stop="70787"/>
          <exon e_start="70935" e_stop="71103"/>
          <exon e_start="71207" e_stop="71305"/>
          <exon e_start="71423" e_stop="71572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGATGAATCTTTCCCCTTGAATTTCCTATTCATCTCCCTTGAAGATCTGGAGGCTCCAGTCATGTTGCGTCCTCACTTGGCTCGCTCCTCCTCTTTACTGTTCCTCTTCATTTTGGTAAATATATCCGTGTAATCTTGAATTGTCAAACAGTCATTTTTCTTTTCAGGTTCTAAGAACTGATTAATTTTGTTTTTCCTTTAACGGATTTACATCGAATCTACTGATGATACTTAATTTTTAGCTCGCCCAAATGTGCATTTCTGATTCTAATTTTTCTAAAACTTTGATAACCTTATCAGCGAATTGATGGAATTGAATGTTTGGATGAGATGTTATTTGATTATTTGACTATTGATTTTTGTTCTAAAGTTGTTTACACTCTGAAGAATGTTTATGTGAGATACCTGTGAATGGAAATGTTTGTATGCCCTTGTTTTACATGATCATATTTATTACGAGTAAAATCTCTGTGAAAGTGAATAAACTCCCAATCGTTCTAGAAGCTCCTCCACTTGTTGCAAAACAGGTTATGAAATTCAGTTGAAAGGGTGAATATATATATTTTAATGGTGGTTTCTGGGACAACTTGTGTGCAGCTTGACTATTCCACCTTTTACTGCCACCCCCAAATGAGTCAGGGTGGTTAAGTTTGTTTGCCAAGGTTTAGTAGATAAGAAGAAATCACCTAATGTTTTTGTTTTTTGCCTCCTACTGATTTGAATTTGAGATCTCATGGTTCACCTCCCACTTCATTGGACCATAGGTCACGCGTCCACACCCAATTGATATTCTAATGTCACACTTCATCCTTGAGTCTTTAGGTTACAAGTGAATACAATGATTTTATATTTAGACTATTATATTCTTTTTTTTTTGAGATAAGCATTTGATTTTACTAACCATATGTAGGACTATGAGCTTATTGGTTCCAGGAGCATTCATTGTGTGTTAACTTGAGACACTAGTATTGCATTTCCGTGGACCTTAGTTTGTCTAAATTGTGAATGTTTATATTGTATAATGATTTTTCTTCTTTGTTTCTTTGTTTTTCTTGCAATGTAGCCTAGTCACACTGTCACAGTATATTTATGTAACAACTTTCTCGTGGTAGGGATGGTTAGTGGGAGGTGAATATTGACAAGCTTAAAAAAATTGGCACTTTCTTGGGAATTGTAGAATCAGTAGCTTTTGATTAAATTATTTCCTTTATTTTTCTTTTTTGTGTTCAGTACTCTGGAAAGTATTTTCAGATTTCCGTGTTAATTCGTTTCACTTTGCACTAATGATTTTCTCAAAGCCATTTACTCCCACTTGAAGCCAAGAGAAACTATAGAAAGGGTACTCATTATTGCAATAATATTTGGCAGTTGCTGAGTCATAGTTCACTTGGTTCTACGGGTGGAAATCGTAAAACAGGGAAGTCATCGGTATTTTCGTTATTTAACCTTAAAGATAGAAGCAAATTCTGGAGCGAGTCTGTTATTCATGGTGGTGGTAAGTTCTAGAAATGCATGTTTTTTTGTGTACTTGGTTGTAAAGATGACTTTTACTAGCTCAATTTCCATTAACGTTATGCTGTATGGGTACAGATTTTGATGATCTGGAAGCATCTAAACCGGAAAAATTGAGTGTTCTCAATTACACCCAGGCAGGTACTTGTGTTTCTCCAATATTTTAATTTTCTTCTACCTTTTGACAAAGGATTAATTTTCACTTTCTTTTATATTTGCCTTTGATGTGTATTATACTCCCTTCTCAATTTTCTATATTAGTGCTTCGTAAGATAAATCTTTTTTTTAAACTTTAGTTCTGGAGACTATTAAACATTTTTTTTCATGCATTTACCTTCTATTTATCTATTGAAGCTTCTAGTTTTCTAGAAGATGTAACTAGTTAAATCACATTGTAAAACTTGTATAATGGATAGAAGCAGGGACTCGTATCGTGGGGATTTTCCCATGAACTACCCTTTTCTTTGTAAACACGGTGGTGTCCGGAGCAACTTGTGCACACCTCGACCACTCCATTGGATATCTATGAACTATCCTTTTTAGAAAGTCAAATAAATAAGCATTCTAGTTGATGATATAGTTTCAATTTTTTAGCATAAAATTTGTGCTTTTCTTTTAGCTCATGTATTCATCTTTTGACATGTTCATTATGCAACTTTGAATGAAAATGCCGCAGGAGATTTTAAAAGAACTACACTCCATTATACCTTGAAGCTCAAATATTAGGTGGGAGAGCCCCGGATGTTGAAATCTGAGTGTCAAGCACCACAACGCCTCAATCCCAAGCTAGTTTGAGTTAGCTGTAGGATTTATCATGGGTCATATCGCTCCATTTAAGCTCATCAAATTAATATTATGCTAAATAAAATAAAAATTGAAGTGCTACATGGTCTCTATATTCTTATTAGCGCGCGCACATTACTAAAACATCTTTTTAATTATTTGGTATCACATATATATATATCCCTGACTTCCAACGCACCTTGTTTGTTTTTGCTGGATCTGCATGGATTCCAAGAGATTGTAGGTCTTTTAAGATTACTTCCTTCCATGCTAATTTAGATCTAAGTTGTTTCTAATTAACACCTTTACTTACCATGATTTAACACTTGCGGATGGATGCATGGATGCATTTTCAAGATTACTTCCTTTCATAGTGTTGCTTATACCACATTGGTACATCAGTTCCATAGAGAGACTCCTCTCTAAAAGCAAGAAAGATCAACAATAATGAGGTGTTGTTTTCCACACCTTCGACTCTCGATTAGGGTTGCAGAAGGCTAAAGGGTAATCTTGAAACAAGGGTTAGGTCACGATGGGCTTGTTGATTTCAGAAAGGAACTTTCCTTGCTCTGTGTTTAGCGGGGAAGATTTGAAAGGGGTACTCCATGGAGAAATTTGTGATCCTGTGCAGGTTTCTTGGCGAGCAAGAGGCTTGTTGTGTTTTTCGAGAAGGTTGGAGGTGTATGGACTATAATTTTTCATTGGTGGACTGAGAATATAGTGTTGGAGTTGAAAAGAAGAAGACCGAGTCTAAAGTAGTGGTTGTCACGTTCACCTCTACTAACGGTTGTTCAAAGGAAAAAGTGTAGTGGTGGCCAAATTTAGGAGCAGTTGTGGTGGATTTCAATCACATTGGAAGGAGTATTCATGTTTGGTTAGAGAGGGGTGCATGTGGCGGTAGAGTGTTGTGCGGGTGACAAGGTAACAAGTCTAGATGGCTTCATGTTGGCTTTCTTTTGGCATTTTTGGAGAATAGTAAAAGCTAATGTTGTGAGCATAATGATGAGTTTCTAGCGGGGTGAATTTGAAAAAGCTTAAATGCTTCTTTCATTGTTATTATTCGAAGGCAGGGCCACCAGCGTTGGGGACTACAAACCTATTAGTGTAGTGGGAAGCACTTATCGGATCTTTTCAAAGGTGCTTTCTACTAGTCTCAAGAAAGTATTGGTTTAGACACATGTCCACTTCGTAAAATGCTTTTAGTGAAAGAAGAAAAAATTTGGATGCAACTTTGGTTGTTGTTGAAGTGGTAGATTCGAGGAAGAATCAGGGTGTGCGAGGTGTCTTGTGCAAGTTAGATCTTGATAAAGCTTATGGCTATGTTACATGAAATTTCCTCGACATTATGATGCTGAAGATGTGCTTGGGAGAAATGGAGGAAGTGGATCAATTTTTGTTCTCTTATGTGAGATACTTGATATTGGTGATTGGAGATCCTTGTGGTTTTTGTGGTAGTTAGAAGGATTTGAGGTAGGGAGATTGTTTATCACCCATGCTTTTTATCTTCGTGATTGAGGCTTTGAGTAGGATGATGGACAAGGATAAGTTGGGCGGTCTTATCAAGGGTCTCAAGGTTGCGGTTGGTCATTGGTGGCAGGGTTATCAAAGGTGCGCTTTAAGCGCGCTTAAGTCCTGAAGCGAGGCTCAAAAGGTATTGAGTGCTTCGCCTCACTTTATTTGCGCTGGAGTGTCGTTATCAAGGTTCTAAGACAAACTTTTCCTTGCCAATGAGCCTCTTATGAAGAATTGACACTAAACAATTGATATTTCACTTAAAATTAAAAAAATTTAATTTCATTGGTCATTATTTGTCATTCATGTTTGTAACTAATAGTCTTGGACTAAACATATATATTTATATTTTATCCTCCCTTTGCACCTTTTTTCATTAAAGCCCACACTTTATTTGCGCTTTGCTCTTAAAGTCCTGATGGACCTTAGAACTTTTTTGCGCTTTTCGCCTTTGATAATACTGGTTGGTTGGTGGTGGTAGTGGGACCTTGTCGGTTTCCCATCTTTTATTTGTGGATGTTATTTTATGTTGTGTTTTGCTGATGGGATTCAGTTGGACTACCATGGACAAGTGTTGACTTGGTTCTAGGTGGTATTAGGGATCAAAATTGATCTTCGAGAATGCTAGATCTTTCCCATTGGTGCAATAGACAACATTGATGTGTTTACTCAACTTTTGCATTGCAATGTGGTTTCTTCCATAAACCTTGGATTACTTCTAGGTGCATCAAACAAGGATCTCAACGTTTGGAATTCATTTATCTAGAGAGTAGAGAAGATGCCAACAAGGTGGCAGAAGAGATATTTGTCCAAAGGAGGAAAATAAATGCTTATCAAGAGCACTTTATCTAGAAATACTACTTATTGCATGTCCTTGTTCAATGCACCTATCGTTATCATAGCAACATTGCAAAGGTTGCAAAAATTGTCTTCGGGATGCGGCTAATGGGGCTAAGAAGTTTCACTTAGTTTGTTGGGAGACATTGACAATGCCAAAATGATGAGTTTCAACAAGCCACTTTTGGGCAAGTGGTTGTGGAGATTTGGGTTGGAGGGGGAAGCTTTAGGGAGAGGTGATAGCAGAGAAATATGGAGTACTGGAATGGGGAATTGAAGAGGGGGGTGGCGGAGAACAAAGTTACTATGACTTATGGATGTGGTGTGGAGGAATATATTGAAGGGTTGGAAAACCTTTAAAAACATTCTTTTAAGGTATGGGTTGGGAATAAAGTTGGTTTTCGGGGCGAAAAGTGGTGTGGTGCTAAAAGATGATTTTCTGGTGTTGTATAAGGCCTCTTGCCAAAGGGAATTGTTTGTCCAGCAAGTTAGGGGGACAGAATGGGATTTTGGGATTTGAGGTTTAGGAGGAATTTGCAGAATTGGGAGGTGAACGAATTCCCGAGATTGCGAACTTTAATTCACAAGCAATGTGAGCCCATCAATAGACCTGATGCTTTGAGTTGGAAGTTGAGAAATAACAAAGTGTTCTCTGTCAAGTCTATCTATGAGAAACTTTTGGTTAGGATGGATGTTAGTTTCTCTTATGATTTGGTCTCGATACCTAAGGTGTTGAGGAAGGTGTGCTTTTCACATGGTTGGCTACTAAGGGGTGATATTGATGATGGAAGAATTTTAGGAAAAGAAAGATTGTTTGTAGGAGCGGCATATGAGCGTGTTGAGTTGAATATGAGTATGATAAACTAGTTCATTAAAAATGGGTTAAATGCTCTACTCATATTTTAAATGAGTACAAAGGAGTTACCCAATGAATAATATGGGTACCCATATTTACCCATATTATTGTAGGGATCATCTTAAAAGCTTTAAAGCAAAATCTCTTACCTCACTCTTCACCCCTTTCACCTCCCACTCTACCCCATCCCACCCCCAACCTCAATGCCTCAAAAATTAAATTTATTTTTTATTAGTTTTTTTTTCAATTTTATTTTTATTTTTTAAAAATAAATTTATTTTTTACTATTTCGACCCACTCCCACTACCACCACTACCCCCTCCCCCCACTATAGCCCTTTCCCTAAAAAAATTGTTTTCCAAAAAAATCAATTTTTTAGCTTATCCAACCCATCCCTATTCCGGTCGGTTACACCTTAAAAAAATATTAATGCTTCTTTTATTTCTTTTATAAATGAATTTCTTTTACCCATTTAACTACACATTTTTAAATGGATAATATGAGTTCGACTCATTTTTTACTCACCCCAACTCATTTAAGATGGGTAATTTGAATGGATACCCATATAAAATACTCATTTTGCCATCCCTGTTGTTTGCATGAGATTATGTTTCCTATGTAAGGAGGTAAGCGAGGACGTGGATCATATTTTGTTACATTACAAACTAGCCATGAGGCTTCGACATTGAATGTTACTCCTCTTGCTCTTTTGTGTGTCGTTTGGAAGGAGAGGCATAGAAGAGCTTATGAAGGGGTGGAAATGAGCTTTTCTCAGTTGACAAGTAGTCCCTGATCCCTTATTTTGTTTTAGTGCACCCATGAAGTTCCTGTTTGTATAGAGGTCTGGGTGTCTTTTGGGGTAAGCCATATATTGTAGGTCTCTCCTTTTTTTGTATACCTCTTGTATACAACCATAATGCCCTTGTTATTATCAATGAGATCTTTAAAATAAGACGGGAAATATTGTATAAGCTATACATATATTTATCGTACTGGAATTGAAAAGTTGTTACCGAACATTGGATAAACAATGGACATATCGTGATTGTTCTGTCCAATACATCTAATGAAATGTGGCCAAAGACAATAGGTTGAGTGGCTCGAGGCCTTTATAAGCCCATTTGGTGGATTCTTTTGCGTTACCCATTTGAGATAACTGTATGAGTCAAATAATACTTGAATGAGCCATCATATTAGTGTATATCCCTAAAAGCCTTAAATAACTATATGCTTGATGTGTTGAATATTCTATTAATACGTTCTAAGATGGAACAGAGGGGAAGTATATTTTTTAATAAGAGGAGTAAAATACCAGTGAACCTTTTCAAAAAAAAAGAAGTGGAGTGAAATAAAATATTGTTCTCTTGTACTGCAGGTAATATAGCAAATTATTTAAAGCTTCTGGAAGTTGATTCCATGTACCTTCCGGTACCTGTGAATTTCATTTTTATTGGATTTGAAGGGAAGGGTAATCAAGGTATGTATTATTCCTTTACTTTACCTTTTATAAAAAGGTATCCAATTGTCCCTTCACAATTGAAGATGACTGTTTTCTTTGTTATATTTCTGCATTGTAAATATTGACTGTATTATTCTTTACTACTGCGATGTGGTTTCTGCTCAGAATTTAATCTACAGCCACTGGAACTAGAACGCTGGTTTTCAAAGATTGATCACATCCTTGAACATACAAGGATTCCTCAAGTGGGAGAAGTTTTGACACCATTTTACAAAACTAGCATTGACAGAGAACAGCGTCACCATCTGCCTCTAATAAGCCACATAAACTACAAGTACTTTTTGTTTTCCTTCCCCGAAACAACCATACAATCCGCGTGAGTAAAATAGTTAATGCACTACAGACTGATCTGATAAGGTATTCAAATCTTTGTGCAGTTTCTCTGTTCATGCCATTCAAATGGGTGAAAAGGTCACATCCATCTTTGAGCGTGCCATTGATATCTTTGGCCGCAAGGATGATATGTCTGATAACAGGTACTTGAAATCCTTTCTAATATTAGAGAATTTATGTTTGTCTGTGTAACTTTCTGTGACTATTGTTATTTCTTAGATGCGTTTCTTCAGTTCCTCTATATAAATGTGTGTTTGCAGGGATGATGGAACTGTTCTGTGGCAAGTTGATGTGGATATGATGGATGTTCTCTACACCAGTCTCGTGGAGTATTTACAACTGGAAGATGCCTATAACATCTTCATTTTAAATCCCAAGCGCAATGGAAAAAGAGTCAAATATGGATACAG</genome_strand>
        <mrna_strand>CATTTGATGAATCTTTCCCCTTGAATTTCCTATTCATCTCCCTTGAAGATCTGGAGGCTCCAGTCATGTTGCGTCCTCACTTGGCTCGCTCCTCCTCTTTACTGTTCCTCTTCATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAGTCATAGTTCACTTGGTTCTACGGGTGGAAATCGTAAAACAGGGAAGTCATCGGTATTTTCGTTATTTAACCTTAAAGATAGAAGCAAATTCTGGAGCGAGTCTGTTATTCATGGTGGTG...............................................................................................ATTTTGATGATCTGGAAGCATCTAAACCGGAAAAATTGAGTGTTCTCAATTACACCCAGGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATAGCAAATTATTTAAAGCTTCTGGAAGTTGATTCCATGTACCTTCCGGTACCTGTGAATTTCATTTTTATTGGATTTGAAGGGAAGGGTAATCAAG...................................................................................................................................................AATTTAATCTACAGCCACTGGAACTAGAACGCTGGTTTTCAAAGATTGATCACATCCTTGAACATACAAGGATTCCTCAAGTGGGAGAAGTTTTGACACCATTTTACAAAACTAGCATTGACAGAGAACAGCGTCACCATCTGCCTCTAATAAGCCACATAAACTACAA.......................................................................................................TTTCTCTGTTCATGCCATTCAAATGGGTGAAAAGGTCACATCCATCTTTGAGCGTGCCATTGATATCTTTGGCCGCAAGGATGATATGTCTGATAACAG.....................................................................................................................GGATGATGGAACTGTTCTGTGGCAAGTTGATGTGGATATGATGGATGTTCTCTACACCAGTCTCGTGGAGTATTTACAACTGGAAGATGCCTATAACATCTTCATTTTAAATCCCAAGCGCAATGGAAAAAGAGTCAAATATGGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339458" ref_strand="+" ref_description="SGN-E339458 [cTOF-4-D14]">
      <seq>tataacatcttcattttaaatcccaagcgcaatggaaaaagagtcaaatatggatacaggcaagggttatccgaaagcgaaattaactttcttagggagaataaggaggtacaatcaaaaattcttcactcaggaagagcatcagaaagtatccttgctctcgagaagatgacaagaccattgtatgccaagcatccgatggcaaagttttcatggactgtcacagaagatacagatacagcagaatggtatactagatgcgttgatgtattaaacaatgttgagaaggtatctcaaggaaaggacatggctgaagttgtgcagaacaaggttatgcagtttctgaatgggagaaatggagaattgaagcttcgttttgagagagagttaaaggctgggaaatttagcggttttcatgctgaatgtctcactgatacttggattggaaatcacaggtgggcatttattgatttgactgcgggccctttttcatggggacctgctgtgggtggagaaggtgtgcgcacagaactaagtttaccaaatgtggagaaaaccatcggtgcggttgcagaaatttcagaagacgaagcagaaaatctattgcaagaggctattcaagagaagtttgctgtgtttggtgatgtacagaaagatcatcaagccatagatattcttttagctgaaatagatatatatgaactatttgctttcaatcattgcaagggaaagggaagtcaagcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="71214" stop="90889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71514" g_stop="71572" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71573" i_stop="79695" i_length="8123">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79696" g_stop="79735" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="99" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79736" i_stop="79883" i_length="148">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79884" g_stop="79941" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="157" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79942" i_stop="80051" i_length="110">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80052" g_stop="80134" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80135" i_stop="81161" i_length="1027">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81162" g_stop="81260" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="339" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81261" i_stop="81431" i_length="171">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81432" g_stop="81547" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="455" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81548" i_stop="81622" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81623" g_stop="81741" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="574" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81742" i_stop="89578" i_length="7837">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89579" g_stop="89649" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="645" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89650" i_stop="90488" i_length="839">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90489" g_stop="90589" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="747" r_length="102" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E339458" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71514" e_stop="71572"/>
          <exon e_start="79696" e_stop="79735"/>
          <exon e_start="79884" e_stop="79941"/>
          <exon e_start="80052" e_stop="80134"/>
          <exon e_start="81162" e_stop="81260"/>
          <exon e_start="81432" e_stop="81547"/>
          <exon e_start="81623" e_stop="81741"/>
          <exon e_start="89579" e_stop="89649"/>
          <exon e_start="90489" e_stop="90589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACATCTTCATTTTAAATCCCAAGCGCAATGGAAAAAGAGTCAAATATGGATACAGGTTTTTCTTGTGAAAATTGAACTTTTTATATTACTAAACCTGTATAGTCTTCCCAATAGCAAACACGGATGCGAAGTAGTTAATAAGGCTTCAGTTATTAAATTATACAAAGATGATTAGAAGTCCATATTTTACTATTGGAAGCAGCCTCTATACTTTCTCCAGACTCCACTTGTGAGATAACACTGGGTATAATGTTGTATTCAACAATCAGAAGAATGTGGAAGTTAGTAAAGGAGGACAAGTCTATGAAGGGATGACAATGGGGCGGGTTGAGCTTAACCCACAAAATTTCTAACCCGCATAAACCCGCTCCGCCCCGCTCTGGTAACTATAAATTTCAGTAAAAAAATCCTTTTTCACCATTTGAAGCTACGCTCAACCAACTGTAAATTTTTCTTTGAAGACATTAACATTACTCATTACCAGCTTGATGATCATCAATGGTTATGATCTCTTAGTACTATCCTGGTATCTACAACCAACTGGTACCACAACGAGGTTATAACAATCTCTCTCTCTCTATATATTTAGTTTGATACATGTAGCTTGAAGTATTATATAATTTTAAGCAAAGCTACGTATATTTTTTTGGTATATTCCAAAGAACAATATTAATTTTTACTCTTTTTTTAAACCAGCAAATCCCCCGCCCTATATTAGTTTAGAAAAAAATATCCAACCCGCCCCGCACCCACCGCCTTGCCCCGCTTAGCTTAAAACCCACACGCCCCACATCCGTCCGACCCGTTGCCATCCCTAATTCTATTAATTTTTTGAAGTTGTAGCAACAAGGGTAAAATGATCAAGCTTTGATTACTACAGTAACACCAAACTCACATGCATGGACGTGCAATATATATATTTTCTGGATGATTTCTGCATGTAAATTAAGTTTGACAATTGAATTAATATCGGATAATGGTCAGCATTGTGCTCTTGTGTAATAGTATCTTTCTTGACCTAGAGCTTATGTTTTTGAGGTGTGGAACGATCTGCTCTTGCATGACTAGTATTGCCATGCTGAAGGCTGAAGCCTTGTGTTACATGATGCTCTATTTGTTAGGGTTGACAACTCCTATTTTGCTGTGTAAGACCTATTTACTTCTGTAATTTTAAATATTGAGTCATCAAAACTGTTGTCAATGCTAACACCCAGTGTTACACCTCTTAGATGTAAGTAAATCTATACTAAGTTGCCATACTCACTTGTTCAGAAAACATTTACTTGATTTAATTGATTGCATTGGAGTAAAAATATGCACAAATTTCATTTTGTTCCAAGTATTTTTTAGTGTTAAAGGTTGCACTTTTACATGGTTTCATGTGAAATATTCTATTTTTGGAAGATAGGCAGTATTTTGATGTAGTTCAAACTAAAAATTATCAACTCAATCGAAAAAAGCAAGTTGAAGTGGATTTTTTTTGTAGAACTTAAACAAATAGTTATCCCCAGTAAGTACTCCCTTTCAATATTTTTGTCTTGTATGACTTGACATGGAGTTTAAGAAAGTAAAGAAGATTTTTGAATCTTGTGATCTTAAATTAAAGATATGTACAATGTACCAAATGTCCTTTAATCTTGCGGTCTAAGACATGCCATGTGGAAAGTTGAAATTAAATTTAAGATGTAGAATGTACCAAAATTTCCTTTAAGCTCGTGGTCTAAGACCTGCCATGTGAAAAAGTTGAAATTAAAGAGTTGCCGAAAAAGGGAAGTGACATTCTTTTGAAACAAAAAAAAAAAGGGAAAGTATAACAAACAAATTGAAATGGAGGGAGTAACAGATATGATCTCATAAAAGTTGAAACTAAAAATAAAAGAAAATTACTTATATTTAGTAGCTCACATATACATACAGATACATTCTCCCTTTGCTCCAAAAATTATGACTTGCTTCTACCAAAGAAACTAAGATTTGGATGTTTAAACAGATTGTATTGAATTAGAAAGTGCTTGTAAGAGAACCTTTCAAAGAAAAAGATAAATGTGCTTAAGCCCTAAAGCGAGGCTCAAAATGTATTGAGTGCTTCGCCTCGCTTTATTTGCGTTTCAGTATCGTCATCAAGGTTCTAAGACAAACTTTTCCTTGCCAATGAGCCTCTTATGAAGAATTGACACTAAACAATTGATATTTCACTTTATGATTAAAAAAGTTCAATTTCATTGGTCATATATTTGTCATTCCTGTTTATAATTAATAGTCTTGGTCCTCTTGGATTAAACATATATATTTATATTTTTTCCTCCCTTTGTGCTTTTTTTCATTAAAACCCATGCTTTTTTGCGCTTTACGCTTAAAGCCTCGACGGACCTTAGAGCTTTTTTGTGCTTTTCGCCTTTGATAACACTGGTTTTAAGAAATGTGAATAACAGGAGTAGTTAACGAGTAATATGCAGCAAGACAAACTATTGTATTCTAACTTTGTGTTTTTGGTGTAATCGAATACACTCCATTGACACTGTCTCTATGATTGATGTTTTAGACTCATTATAGGGATAGGACAGTGCCTTTCGAGTTTATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATAGAAACAATTACCAATCTCAAAAAATAAAAAATAAAAAAATTGACTAGATGAGACTTTTTTTTTTGTTTGATGAAGTAATATGTTCCATTAAAAAGCATCAAGGAGATGCAAAGTTACAAGGGGCATAGTTACAGGTAACATAATGACAAAAAGGAATATTCAGCTCAGTTCAGCCCCATACAAAGTGTTAATCTAAACCTGGGGTGCTAACAAAGTCTAGAAAATGTCCAGCACTAAGAACTGGGGTCAACTTTGACCAATAAAAAAGGTCAAGCAAAACATTTAGCTTAAAGTGAGTGATTTGGAGTTGAGATGCCATCAAAACATCTCTTGTTCTTTTCTGTCAACAAACACCAAAAGATAGTGGCAGGAATCATCTAGCAGATTTCAGATCCTTGTTACAGTGGTAAAATATGTTAACCAGCTGAATTCCTTTCCTGTTACAGTTGCCTAGTTTCAGACAGGCTTCATATAATGCAATCCAGTAGATGAGACTTATGAAGGTGCAGTGGAGTTTTTTAAAGACTTTGGAGGAGTTTCAGGGGCCATCAGAAGCAGAGGACAAATTGTATTGGAATCCAAGCAAAGATGGGACTTTCACTGTCAAGTCTGCCCATTTAGCAATCAGCAACCATGCTTATCAGATTATTGATTGGCCATGGAAGGTTCCTTGGTAGTCTAGAAAGACAGTGTCGAGTCAAGGAAGGCTGAGAAGGAGAGGATTCCAGTTATGTTCCAGATATTTGTTCTGTAATTCCAATGCAGAAACTAATAGCCATTTGTTTCTTTATTGTTCTTCTAGTTATCAATTGTGGCAGCTCTTTCTTAATTTGGTGGGAATCAAATGGTGTATGCCTGCAGACACTGTGGATCTTCTTTAGAACTGGAACAATTTGGGAGGTATAGTTAGACAGAAGAAATGGTGGAGATTGGTCCTGCTTGCATATGGTGGACAGTTTGGATAGAGAGAAATTCCAGCCTTTTTGAAGATAGGGGCAGTCATATACAGGAGATTATGTTGAAATGTGTACTTCTGTTCAACACTTCCACTTTTGGTGTAAAGAGTGCTTTTTTAAAAGAAGGTGGTCTATAGATTTGATAGGGCAACTGCAATTGTTTTTAGGCTTTTGTTTGGTAGCTCTGCCCTGGTGCTTTTAATTCCAATATTTCCAATTTAAAAAGTTTTAGACTTTTGAGTTAAACAATCTTCTTTGAAGAAACCCCTTGCCAATGGTTTGGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCTTGCCAGCGAAATCAAGAGGTATGCCTTATGGGTAGAGATCATCGCACTGGGCTTGCCTAGTGCGAATTATCTCTCGAGTGTAGTTTGCGATTTATTGCATAGGAGTAGGGTATTTTACCCTGTGCACCCAAAGGGTAGGAACTGTGAGTGTCCCGTGTCATATAAAAAATATCTTTTAAAGATACAAATAACTTCCAAGTTTAAACATTATGCTAGATTACTAGTAAGGGTAGAGTACTAACAGAGGATTTGGTAATAATGAAGAACTCTCCTTGGATCACTAGTAAGGGTAGAGCACTAACAGAGGATGAGGTAACAATGAAGAACTGTAGATTACTAGAGTTCGAGGAATTGCTCAAATATGAAGAAATTGCATGGTGACAAAAATCAAGATCACTATGGTTAAAAGAGGGGGATAAGAACACTATGTTCCTCCACAAAATGGCCAATGCACACAAGAGGTACACCAATATTGATGAAATAGTGATCCAAGGAGAACTAACCCAAGATCCTGCAAAAATTGAAGGAGAGATAGTAGACTTCTACAAGAAGCTATATATTGAAACTACTAACTGTTGACCTGCCTATACTGATGCAAATTGCCTCGGGTTATCAGAGGAGGAAAAGGAGAATCTGCAGAGGAACTTTGAGGAGAGTGAAGTCCTAAAATGTCTGAAAATGTGTGCAATTAGGGATTCCCATGGGTTTTTTCTTAAAATGTTGGGAGGTGGTAAAGGAGGACGTCATGAAAGCTTTCCAAAACTTCTATGAACAAGAAGTGTTTGAAAGAAGTTTGAATGCAACATTTATTGCTCTCATCCCAAAGAAGAAGGGTGCGAAGGATTTGAGAGATTTCAGACCCATCAGCTTAATAGGCAGCATCTATAAGCTTTTTGCTAAAGTTCTGACAGAGAGAATTAAAAGGGTAATGGCTAAACTTGTGGATTCCCGACAAATGGCTTTTATCCAAGGAAGACGAATCATGGATGCGGTGTTGATAGCTAATGAGGCAGTGGATTCCAGACAAAAGCAAAAGAAACCAGGAATACTTTGTAAGCAAGACATGGAGAAAGCCTATGACCATGTTAATTGGGAATATCTTTTGACCACAATAGGGAGATTGGGATTCGGAGGAAGTGGATCCAATGGATCAGACATTGTATCACTACTGTGAGATTCTCAGTACTTGTGAATGGATCCCCTGTTGGTTTCTTTAGTGCAGAGAGGGGACTAAGGCAGGGAGACCCTTTGTCTCCTTTCCTTTTCCTACTTGCTATGGAAGGGCTGAACAATATGATCAAATCAGCTAACGTGAGGGGATGGCTTAGAGGTTTTGAAGTCAGCAGACCGAAAGTTGATAATGTGGAAATTACCCATCTACAATACGCGGATGACACATTGATATCATGTGATGCTGATGAAGGCCAACTATAGATGTTGAGGGTGATCCTAGTGTTGTTTGAAGGGTTCTCTGGTCTACACATTAATTGGAGGAAAAGCCACCTCTATCCAATTAATGAAGTACACAACATGGAAGCATTAAATGCGGTTCTAGGAGGGGAAATTGGAGCGCTGCCTACATCATATCTTAGGATGCCTTTGGGGGCCAAATCTCAGTCATATGAACTCTGGAACAATGTGGTTGAGAAATGTGAAATGAAGTTAGCAAGATGGAAATCACAATATCTCTCCAGGGGTGGCAGGCTGACCTTGATTAATTCTGTTCTTGATTCACTACCAACCTATATGATATCAGTGTTTCCAATTCCCAAAAGTGTAATCACTAGCTTGGATAAAATCAGAAGAAAATTTCTTTGGCAAGGAAACAGTGAGAGGAAAGGCTACAACTTGGTTAAATGGGATGCTGTGATAGTGGGAAAGAAGCACGGAGGTCTCGAAATAAAGAATTTGCTGAATCAAAGCAAAGCCCTTATGATGAAATGGTTATGGAAGTTCAACAATGGAGAGCAGACCAACAGGAAGGAAGTCATTAAAGCTAAATATGAAGAGGAAGATAACTGGATGACCAAAGAAGTGACTACAACATATGGGGTGAGGAATGGAGAGAAAACAGAATTTTGGAAAGATGTTTGGCATGAGGCAAGTAGGCTAGAGGCCTTTTATCCTGATATATGCTCTCTGGTTTCTCACCAACAGAAGACTATAGTAGATCACTGGACTCCTCAGGGGTGGAACTTCATCTTTAGAAGACAATTAAATGATTGGGAGATTCAAAGGGTAGCAGATTTTTTCAACACCATTGGGCAATTTAATGGACTGGAAGGAGATCGGGACATTTTGTTGTGGAAAGGCAATCGAAAGGGCAACTTTAAGGTAGGTTATGCATACAACTGGTTGAACCACACCAATCAGCCTCAAAGTAACTGGCCATGGAGAGGAATCTGGAAGTCAAAAATTCCACTCAAAGTGGCATGTTTTGTTTGGTTGTTAGCCAAGGAGTATGTATTGACTCAAGACAACTTAAAGAAAAGGGGGATACCATTATGTTCTAGATATTTCTTTTGTGGGGAAACTGCTGAGACAGTTAACCATCTCTTTCTACAATGCAAGATGACAAGTCAACTATGAAGGTTAATCCTGAGCCTTAAGGGTATGTCATGGACCATGCCTGCCAAGATCACAGAAGCAATTCAGAGTTGGGAGGAAGCAGGAATGCAGTCCAAGAGTAGAGACAGATGGAGAATTGTCCCAGCTAGCTTATGGTGGGCAATATGGAAGGAAAGGAACTCTAGAGCTTTCGATAGTGTTGAGAATAGTATGCAAAAATTCAAACTAAATTGTCTTATGCTGCTATGTTTTTGGTGTAATCAATTATACTCAAGTGATACTATCTCCTTAATTGATGTACTAGACTCAATTTAGTTAAAGATAGTAGAATTTGAAGTACATGTCGTAAATACTGATCAGTGTACTGACTTTTGAGGAATAGACAAAGTTACCATTTTCAAAAACAAAACAAAACATTATGCTTGAACTTATGGAGAGAGAAATGTTTCCATCAAGAAAGAGGTCACTTCTTTTGGATGAGAAAAAGAAAGGTAAGTCGAGCTATGTTCTGGAACTGACAGTGTCATTCTGAAGGTTTAATCAGATTTGAAACTTAAGTACTAGAGCAAGTAAAATGTGGGGGTGGGCTTTCGGTATTCGGTTTGGGTTTCCCAATTTCGGTTATTCAGTAATTGGTAGTTAAAAGCAGATACTAAATTCTTAAATTTTGGTTCGGTAATTTGGTAAACGGTAAATTAAACTTTGGTTTGGTACAATATTAGACAATATCATATTGAAGTTATAGACGATTGTACTACAAAATTAATACTATTTCTCCAACCATTTTTTTTAATGTGGAGGCACAATATTATAGGATATTCTTAAACTTTTTCTTTGAACTTGTGAGTAATGAATATGTTGATATATGTCCGTCCTAAAGTAATAATTTGGTATTCGTGAAATGCCGAATACCAATGGTACTAATGTCTCATACCAAGCCCAAACCTGAATACCATAGTACTAATACTTTACTCCCGAATACCTTACCAAATACCGAATTACTGAATACCAAATTACCAAATAATTCGGTTTGGTAATTTGGTTTTTGGTATTCTGTGCCCAGCTCTAGTAAAATGTATAAAATCTGTCCTTATGCAAAATTTCAATGTAATACATTGCAGGCCCATGTCAGTTTTCTATTGTGTGTGTATATAAGGGTTTTGGAGCCATTTTGTTTTAATCAATTTTACATTACTTAGAAACTCATTTCTCTACTATCTAGTCTACTTGCTTATTAAGAATTGTGTAAAAAGCTTTGTAAACCTGGAGATGGACTAAGATCCGTGAAGCTTAATACATGTAGTTCTTAGTCCTTGCGGTACTTCTCTGGTAACTGGAATTTAACTTGGTCAAAATATCCTATTAGCAGCAAATATGTTTTACTATGTGCTTCTGCATCAGCTGGCTTTCAATTTTTTGCTTAGGTCCTTTATGTGGGTATTACATGCAAATGAGTACAATGAAGAGTAAAAGAGAGAGAAAAGGATGTCCTCAAGCTAATTTAGGATATAAGAAAACACAGCACTCCAATGTGTAGAATGTATTCTTGCAGAGATATTCTGTGCATTTGCTGCATCCGGATCATCTCTGATCACATAATATATTTCCTTATTCACATGTCTCTTTATTTCTATTTTCTGATTCATCTGTATATTTCTATTTTCTGATTCATGTGTATCTTCTATTTCTTAAATCATGTAGGCAAGGGTTATCCGAAAGCGAAATTAACTTTCTTAGGGAGGTAAAATTGTGATTTCAATACCCCTTTATATTAGTTGGATATGGATCATCAGCTTCATGTTTTCTGATCTTATACTTCATTCAGTGATTCTTGATTTGTCAAGATCTATTTTTGGGTAATGTTTTCACTGGTTGGATGCTTCTTACAGAATAAGGAGGTACAATCAAAAATTCTTCACTCAGGAAGAGCATCAGAAAGTATCCTTGGTAGGTAAATGGGTGTTCAGATTTTCTTAACTGTAGCATGATTGGTTTTTGTATGTCCTCTGAGAAGCATTAACTAAGACTGAGGCTTATTTTTACAAAAACTGTGACAGCTCTCGAGAAGATGACAAGACCATTGTATGCCAAGCATCCGATGGCAAAGTTTTCATGGACTGTCACAGAAGATACAGATACAGTAAGTTATCTCTCCTCTTGGTTCCTTATATCATTCGGGATCTTAAATTTCATGCATTTCACCGGAGATGGAATTTATAGAGACCCAATGTGGATTTACTTGTTGTGTATGTGCCTATATTACTTGTTGCGCACAAATATTATGCTCTTCTGTATCTAGTCAAGGAGAAAGTTCAATTCTTGTTAGAAATAGATGAGCAAGGAATCTCTTGCCGATGCAATTTATTGTGTAATTTATTATAGGGGCTTGGATTGAATATTTTATTCTAGAGTACATGCCAATGCTCTAGAGTAATAAATGAAGCAGATACAGCTTTTACTGGATGTAAAGATGTTATGCAGGTAGACTGAATGATACCAATGATCAGGGAATTTTTTTAATGCAAGTTTTCTTAGTTGTTAAAATTCAATATGCTAACCCCCCCGTCCCGTAACTGATGAATTAGTGAAGCTGAGTGCCTTTTTTTATTTTTTTGAAACTGGTTATTTTTGTATTCCTCAGCATTAAGGGCTGTGCAGGCTACCTCCAAGAACTGTTACAAGAAAGGAAAAAACGAAAAGACATGTTTATGAAGAACCTATGAAGTCCACTAATTGTATCTCCTCTCTCTGTCCTGTTCTTACACCCAAAGCGTAGAGTAGTAATTACTTTCCATTTGATCTTCTGTATTGTACTCTTCTTTTTCTTTTTTGATAAGGTTTAAGTGAGTGTCGAAACTTGAAAGATCATCACTGTGACAAATGCTCATTCTTGGTTTTATAAGCTCAGTACAGTAGGCTTGTCAAAAAATCAGTCAACATACTTGTTTCTCTTAGTTTTCCATATCATCTATTATTTAATTTTGTACTGTTCTTTTAATTTTATTGATCTTTGAATGTTCTTTTTTCTGGTGATCAAAAGCATTTCTTAGTCAGTTAAATGCGCCACATAATTGCCGTAAAGATGCATAGTAAAACTAAGGTTCTCGTACTCCCATTGTTCTGATGTGTGTTTGTTCTGAACTGTTTACTTTCTTTAACAAAACCAGGCAGAATGGTATACTAGATGCGTTGATGTATTAAACAATGTTGAGAAGGTATCTCAAGGAAAGGACATGGCTGAAGTTGTGCAGAACAAGGTTATGCAGGTATTACACCACTTTATTTTCTCCCCCTCCCCCCTGGATATCTCCCGCTAATTGATCATTATAGAAGAGAAGTACGGCTAATACTGCACTAACTATTTGAACATTTTACATCTTGGATTATCTGAATCCTCTATTTGACTCTAGTTATTATGATACTTTATTCCTTTCAAGTTTCTGAATGGGAGAAATGGAGAATTGAAGCTTCGTTTTGAGAGAGAGTTAAAGGCTGGGAAATTTAGCGGTTTTCATGCTGAATGTCTCACTGATACTTGGATTGGAAATCACAGGTTAGAGTCTTACTTACTTCCCTTCACTCACTCAGTGTCTTTCATATTTGTGATTTTTGTTTCATTTCGTAATAGGTGGGCATTTATTGATTTGACTGCGGGCCCTTTTTCATGGGGACCTGCTGTGGGTGGAGAAGGTGTGCGCACAGAACTAAGTTTACCAAATGTGGAGAAAACCATCGGTGCGGTTGCAGGTACTAAAGCGGTAGTCACATGTTTTTGCTCATCGCTGAGACTTTGTAGATAGATCTTTACACTTTAGATTGTATTTATGAAGTTGACCAGGGATGTCTTAGAAAAATTTGTTTTTTCTCCCTGTTGTGTACATGGTACATAATGGTCTTTGTTGACCATTGATGTATGTGTTTTTGTTATTCTCTCTTTGATGCCTTCTCTTAGTTTATCAAGGCAATAAGACGGCCCAAATAGAGCAGCATGGATATGTAAAATTCATATCTGTGGCCCTAAGAAGTTTGGGATTGAAGTGTGGTAGTAGTAGTTGTTATTGTACTTGATTTTACAATGAGTAGACAGAGTCCTAACTCCTAATAATCAGAAAAGTCAATAAGGATTGACGACATCCATAGAAGTCGAGGACAAAAACCTAGTTTTCTCAGCGATGGTATGGTGTGAAGAACCAGCAACCTACCGGAAAAAAATACCGGAGAAGATGACTGTTGAAACCAGTAGCCAAGGAGAGAGGTCAAATCCTTGTATGTCTAGAGATACAGAGGTAATTCACCAAAAAGGAGGAGAGGATGCAGAGAGATATATTTCAGATATCAATGTATACAAAAAAGGAGTGTCCTTTGCTGACAGAAGGCATGTGTCCACAGTTGGGACCTTTTTCAAGAGAGATTGAAGTGGGTTGGGGGTCCCAGTAGTAATAGTGGTGGACAGCTGGAAAATGGAGTTATGGAAGAAAGAGAAAAGACCCTTTCAGTTCATTTAAGTGGTAGGCTAGATGGTGGAAAGCCCATTCCCTTTAAATCAAATGAACCGAAGGATAAAATAGATCCAAAAAAATTGGGCCCAGAACAAGAACAAAAGCTCTTCACAGAGCCTTTTGTCGAGCTCATTAGTATTTCAAATTAGAAACATGTCGTTGTTCTAACTTCGTAGAATTCGAAGGTGAGGGAGAACTGGATGCAACAGGAGTAACGAGAATGGAAAAAAGGGAGAAAGAGCAGCACAATCAACTACAACCACATGCTAAAATTCAGGAGGAAGAGTGATCAATAAGGGAGGACAATCCAACTCAAATTAATGGAGAAGGAGAGATGGATTTTTCAAATTCACTCTTGGTTATGTATACAGAGCCAGAACCTTTGCAGGTTGACAATAGCACACATGAGGAAGATTTAGCTGCACATGCCACAGAATGGATCCAAGCGAACATGATAAAATTAGGTCAACAATTTGGTGTCGATTTTAAAGGACGCAAAAAGGAAGCGTATACCATGTTAGCTATGCTAGACCAAAGGAGGGAAAAGGATCCTGGAAAAGAGGAGAAGATGAAGACAATAAAATCTAACAATGATGTACCAAAAGAGGTGAGAAATTTGTTCTTTAGTATGAATTTCAAAGACGGGGAACCAAAATCTAGTGGGAGGATTTTAGCTCTAACCAATCAATGAGAGTGAAAATAATCTCATGGAATGTGAGGGGGCTGAATGGGAGGGATAAATAGGACACTGTGAGGAAACTAATACATCAGTGCGAGGCAGATATTTATGTTTTAGTTGAGACAAAGCTGGAGGATAATATTGATGGACTAATACCGAAGATATGGGAAAATAGATGGATGGGAGAAGTTCATAAGGAGGCAATGGGGAGCAGAGGGGGGATTGCAATTTCGTGGGATAAAAGGGTATGGAAGGGGGAACTGGTGGAGATTGGCAGGCAAAGCTTAATTGGGAAATTCATAGGGGTACGTGAAGAGTTTAGTTGGCACATAATTGCAACATATGCTGATTGTAGTAGAGAGATCAGAAAGGTTTGGGAGGAATTGAAAGCCATCAGAGGAAGGATTGTGGAACCATGGATAGTTTGCGGAGATTTTAATGTTACTAGATACCCATCAGAGAGAACAAACTGCCGCAGACTTAGTGGTGCTATGACAAAATTTTCCTCTTGTATTGAGTTGGAGTTGATTGATCCTCCTTTATTCGGAGGATCTTATACTTGGAGAAGAGGGGACAATCAAATGAGTGCTGCAAGAATTGATAGATTTCTTCATTGTGCTCAATGGGGGGAAAGCTTCATTCACATCAAACAAAATGTCCTACAAAAAATAACATCTGATCATAATCCTTATGCTAACATGTGGTGGTTGAGAATGGAAAAAATCTTATTTTAAATTTGAATCTTGGTGGTTGGAGGTAGAGGGATTCAAAGACAAGGTAAAGGAATGGTGGGATTCTTTTAACATTGAGGGGAGAGTAGGATATATATATTAGCTGAGAAAATGAAACTGTTAAAGGTAAAGATGAAAGAATGGAGCAAAGAAAACAAAGGTAACTGGAAGCATAGAAAAGAAGACATTTTAAGGCAGCTAGCAAATTGAGAGAAAATACAGGAACACAGAACGCTTACTGATGATGAAATTTTACAGAAGGCAAATCTGGGAATGGAGTTTGAAGAGATAGCCAAGAAAGAGGAGATAGCATGGAAACAAAGATCCAGGGTACAATGGTTTAAACATGGAGACAAGAATACAAAGTTTTTCCACAGAATCGCGACCTCTCATAAGAGGTTCAATACTGTGGAACAACTTATGTAGAAGGTAACATTGTGAAAGATCTAGCTATGATCAAGGAGGCTGTCCAAAATTTCTACATAAATTTATACAAGGAAGCTGAACACTGGAGGCCTGATCTGAACATTCAAGACGTTAATATGATAAATGGAGAGGAACAAGTATTGTTGCAAAGACCTTTCGATGAAGAAGAAATACTAGAAAGTATTAGGATGTGTGCTAAGGAGAAGGCTCCTGAACCGGATGGCTTCCCAATGATTTTCTTCGAGACTTTTTGGGAGGTTTTGAAGGAGGACATAATTAACACTCTTTCATAGTTCCACTTCAATCAGAATTTTGAGAAAAGTTTCAATGCAACATTCATTGCTCTAATTCCTAAAAAGGTTGGAGCTTCCGAACTAAAAGATTATAGGCCAATCAGTCTAATAGGAGGGGTCTACAAAATCATAGCTAAATTACTGGCAGAAAGACTCAAAAGGGTGGTGAGCAAATTCGTCAATAAAAATCAAATGGCTTCCATAAAAAGGAGACAAATCATGGATGCTGCATTGATAGCTAGTGAGTGCATAGATTCAAGGATGAAAGGTGGAGTTGCGGGTTTATTATGCAAGTTAGACATCCAGAAAGCATATGATCATGTAAATTGGGCATTTTTGCTGAATGTTTTGAGACAAATGGGCTTTGGTAGTAAGTGGCTAAAATGGATAGAAGTGTGCATTATAACAGTCAGGTTCTCAATACTAGTAAATGGTGAACCTGTTGGCTTTTTTGCATCAGAACGGGGGTTGCAACAAGGTGATCCACTGTCTCCTTTTCTATTTATTCTAGCAATGGAAGGTTTTGAAAGTATGATGAGAATAGCTACAAAGGACAGGTGGATCAAGGGTTTCCAAATAGGAGATAGAACAAGGAATGGGAAGGAGATCAGCCATTTGCTATATGCAGATGATACTATCATCCTTTGTGAGCCAAAAGCCAAACAACTGAACTACATCAGATTGATTCTGATCTTATTTGAAGCAGTATCAGGGCTAAGGGTCAATTGGGGGAAAAGCAGGTTGATTGCAGTCAAGGAGGTGCCTCAGACTCAAGGATTTGCAAGCATTCTAGGGTCTAAAGTAGAGAAGTTGCCGACAACATACTTGGGAATGCCACTATGGAGCAAACATAAAGTTTTGGTATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTGAGTCATTCCCAGATCTTTTCTCAATCTGCAACAACCCTGAAGCCAGAGTATGTGAATGCTGGACAACTCAAGGCTGGGGCCTATCTTTCAGAAGGCTATTGAATGATTGGGAAGTAGATAGAGTGGCTTCTTTCCTAGAAAAATTGGGGGGAACCAATCTAGTAACAATGCACCAGATAAAATTATTTGGAAGCACAACAGGGATGGCAGATTCACAATAGTGCTTACAAGAAAGGCATACAAGTTGGGGTTAGAGGCTACTATCATCACTGGAAGAGTATTTGGAGAGGACTGATCCCTACCAAAGTGAAATGCTTCACTTGGTTAGTCATCAAAAGGACCTGCTTAACTCAAGAAGTGCTGCAGAAGAAAGGAAAGCAACTAGTCCCTAGGTGTTTTCTATGCAATTTGACTGGGGGAAAAACGAACACCTATTTTTACATTGCAAATTCACTACACAGATCTGGGTGATGTTCCTCAATATCACATGCTGTAGCTGGACTATGCCAGAACACACCTCTGATCTTTTTAAATGTTGGATCAGAAGGGGGGGGGGGGGTTGCAAGACTCAAAAGAAGTGGTGGAGGCTAATACCATCATGTATATGGTAGTCAGTGTGGAAGGAAAGGAATGAGAGATGTTTTGAAGATAGATCTAATTCCATTCACAAAGTAAAATGGAATTGTTTGGTATCTTTACTTTTTTGGTGTAAAAAGCTCTGTATAGAAGATGTAGATCAAATTATAGAATTATTAGGGAGCTTTTAATTTTGGTTAGGGCTGTAAATTTTTTGAAGGTGGCCAGCATGTCCTTAATGCTGAAGAATACAACTTTACCGATGTTAAAAAAAAAGAGAATATAGGTAGATAGATGTGGCAGTCACTTAACCATTCAGCGCTGTATATTAACTTTAACACAGTGCGGGTTATGGTCTTTCCTTTTTCTTTGCAAATCCTATTTTGTGGACTATCTAATTGAATAGTGATGAAGTCTCGTGAGAGGTAACCTTACACTCAAACTAGATTTTATAGAAGTCTACCCGACATCCCCTACAACGGGAATGAATGGACTGTCTCTTTGTTGTTCCTGCTAATTAAGATTGTTGATAATTAGCATAAGAGAATCAAATTGATTCGTTAGGGTTTACACTCTACCCATATCACTCGCAATATCCTGATGATTTTGCAGCAATTGAACAATATGAAACAATGTTTGCATCGGATGTTGTTCTTGTATAATGCTTTAGCCTTAGTCCGAGCTAGCAATAGACTTTGCAGACCAAAGAGGTTAAGTAATCTCAGATCAAGCTATTTCAAGAGGAGATCACATAGTTGTACATTTTAATCCATGTCGCACGTCATTATACCTTTGATCCACGAACTGCAAATGCAGTGAAGTTGCCCCCAGAAGCAGAATCTTTAATGTCGTACAACTTCACAGTTGTAATTGTAGGTGTTGAAAAAGTAGAGAGGGTGGAGAAAATGGGTTTCTCGACTATTTGTTTGCTAGTCATTTTACCCCTTTTTTTAATCAAATAACTAAACAAAGAATAGAAGTAAACCAACTCAAGCAAAATAGGGAATACAAAATCAACTCAAAATTTTGGGAGAGACAAAAGAGAGAAGTAAAGTAGATATGAAGAATAAATGAGCAATACCGAGTTCCCAAAGATGTTGAGGGGATTGAATGAAGCTGAAGATCTTGAGGACTCTAGTAGAGGTCAAAGAAATTACCAGCAGGATTCTAGGAAAATAAGTTTTCAAAGAAGAGGTGCGTATGATACATTAGGCAATTCTTACATTGGAAAGAGAGAGAATGTTGAAGTGCTATATAAGATAGAACACAAATTCTCATGCTTTTGGGCTCAATGATGGCATAGGCTAAGAGTCAAATCTGTGGGGTCTATCAGGCCAAAACGTACAATACATGTCATGGGATTGGGTTATGACGCTAGGCCACTTGAGAAGTAGCTGTTGGGATTACTGAGAAAGACACATTATGGAGAAGCATTATAGTGGAAATACATGGGAGATTAAATTACAGATGCTTCTTGTGTGTGGTAATGAACTTGTGTGGTCTTAACATCTTGAAAAGGTGGTTAGACAACTGTGGCACTTATTTACCATATTCAGGGGCACAAACTGGACCATGCCACAAAGGGCAAGTCAGGCTATAGAAAGCTGGAACAATGAAGGCAGTGGTAGTACAGACCAAAGCAGATGGAAAATTGTCCCAGCAGTGATTTGGTGGACCATAAGGAATAAGAGAAATATGAGGTGCTTTGAGAGTGTTAGTAATCCTTTACACAGGATTAAAATGAACTGCACAATCACTTTTTGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAGCTGTTAGAGATATCCTAGGTCCTTTGTATGATGAAGTAGGATCTAGTTTAGTTTTGTTTTAAGTACATGCAACTGTATGTAGCTCCATGATGTAAATTTGGGACCCCACCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCGTTGTCAAAAAAACATCTTGGAAAGGAATAATTAAGGGAGGGCAAATTCGTTATAGTGTGGGTGAGCAGTGAGCTCATGAGGAATGATAATGAGATATATCGAATGTTAGTTTCTAAAGGATCATTTATAAGTGGGAGGAAAGTTGGGACTAATTTTAAAGAGAATACGAGTTGAGAGCATGAGAGGGGTGAGGATATGACCATTTGGAGGGATCTCGCTTCTAGAATGTTATGCATTCTTGACATGGTTTGCCTTTGAAAAACAGTTTTGACGCAGATATTTCATGTAAAAGAAGTAGAATAATGGTGACTTTATGTTGTATGTGCAAAGAGTATGGACAAGATACAGCGTATCTACCAGTACACTGCAGGGTTGAAGTACAGCTGTGGAAGCTAGCTAATCTTCTAGTTGTTTATCAGCAGTTGGGTGTTTGCGCAGATTGTGCTGGCATAATTGCAAGCTGGAAGTTACAAAAGAGCGCGAGAGAGGACATAGGCTAGGAAGGCAGTACGTGTTTACCTTTTCTGGACAAGATAGAATGAGTTAGCAGATTGCTTCATAGCATACATCATGATATGAAAAATATTAGAAAATAATTTTAATTGTATTAAATACTTTTGGTGTAATTGTAAAGAGATAATTCTTTTTCGTATTATTTACTGGCCTAATTTGATAGATGGGTGAAATATGACATGTAACCTTATGTTGTATACTTTTTCCATTTTCTCAGTGCGTTAAAAAAACTGAGTATATGACCTATCAAAAACAAAGAAAATCAGTTTCAACGGTACAAGTTATAACTGTTCAGCAGGCTTCTTTGAAGCAATCCATTCAGTTTAACAGAAATGGTCTCATTCCATTTTAGTTAATGAAATATGAGTCTTCATTCTCAGAAAATAGGAGTCTTCCCCTTCTCAATTTCTGTTTAAAATCTTCTCAAGTTAACTCTATCTCAAAACACAGTCGTTTATGCATTCTTATTTTGTGCTTATTTGTTTGCTTTCAGAAATTTCAGAAGACGAAGCAGAAAATCTATTGCAAGAGGCTATTCAAGAGAAGTTTGCTGTGTTTGGTGATGTATGATAGTTACTTAAATAGTTAATTTTCCATTATCATGTCAGTGACTTCTGCTTTTCAATAGTGTTAGTTAATAATTGGTATAGAGATAGGTTAGGAGTATTTACGGAGACTAGAAGCTTTTGGGCAGAAAAGCCCCGGGTGGAATAGCTGAGCTAGCAAAGGACATGGCCATGTCTTCTCTATAAGTTGCCTTCTGGGAAAGAAAAGTTGATTGATTTTTTCACATGAATAGTGATGAGGTAGAATGGAAAAAGGGGAAGGTTTTTGTTGATCAGAAACCAGTCGAAATTTCATAGATGGAAGAAGGATGTGCTAGATCAAGATACATTTTGATGTATGAAAAACAAGGTTTAAGTAAACAAAAGTAGAAAGAGATGCATCACAATGACTTGCTGTACATGGTCTTCATTTTACTTTTTTCTACTTAGAAAAGAGTTGTCTTAGGCATGACATTTCAACTTAGGAATAATCCAACAGTCCGTAGAATTGTTTGAGTATAAAAACTATTACAAGTGCTCAGTCAAGTAGAATGGGCTAAATTTTTAGAGCCTTATTTCTTGGAAATTCAAAATCTGCTTACCCTGCTTCTGCAAACAAAAAATAAAAACTGGTTACTGATTCTCACTTGTCATCTAACTATTTTCTTCTTGTTTTGAAGATCAAATGTTTTATCTTCTACCCCTTTCTACTTTTGAAAAGTAGAAACTTTTATGAACTCCCCTTTCTATTGTCTGCATTTTCCTTTTTTCCCCTCTTTTTCTTCTGATTTGGGGGTGATTATGTTGTCATTGAATGTACGAATGCTAAAGTCTGATATTGGCTGTTCTGTTATGTAGGTACAGAAAGATCATCAAGCCATAGATATTCTTTTAGCTGAAATAGATATATATGAACTATTTGCTTTCAATCATTGCAAGGG-AAGGAAGGTCAAGCTTGC</genome_strand>
        <mrna_strand>TATAACATCTTCATTTTAAATCCCAAGCGCAATGGAAAAAGAGTCAAATATGGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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GGTTTTCATGCTGAATGTCTCACTGATACTTGGATTGGAAATCACAG...........................................................................GTGGGCATTTATTGATTTGACTGCGGGCCCTTTTTCATGGGGACCTGCTGTGGGTGGAGAAGGTGTGCGCACAGAACTAAGTTTACCAAATGTGGAGAAAACCATCGGTGCGGTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246767" ref_strand="+" ref_description="SGN-E246767 [cLEF-45-H12]">
      <seq>caaatggggaaaaacagcttgattacagtcaaggaggtgcctcatattcaaggattagcaatcattctagggtgtaaagtagagaacttgccaacaacatacttgggaatgccactagggagcaaacataaagcttttggctatatggaatggaattctggaaaaagcagaaaaaaaattatcaagatggaaggcttagtatttatccttggggggtagagtgatcttgattaactttgtttagatttactgcctacttatgttatgtcgttatttccaattcctccaataattatcaaaaaactggatagactgagaagaaacttcctttggaaaaaggtaaagagggagaaagcaagggttactatttagtaaaatgaaacactgtgatgctaagcaaagaaagagggggactgggtattagaaatttgagaatccaaaacaagagccttttgatgaagtggttgttgagttatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="85045" stop="86129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85345" g_stop="85829" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E246767" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85345" e_stop="85829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGGGGAAAAGCAGGTTGATTGCAGTCAAGGAGGTGCCTCAGACTCAAGGATTTGCAAGCATTCTAGGGTCTAAAGTAGAGAAGTTGCCGACAACATACTTGGGAATGCCACTATGGAGCAAACATAAAG-TTTTGG-TATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTG</genome_strand>
        <mrna_strand>CAAATGGG-GAAAAACAGCTTGATTACAGTCAAGGAGGTGCCTCATATTCAAGGATTAGCAATCATTCTAGGGTGTAAAGTAGAGAACTTGCCAACAACATACTTGGGAATGCCACTAGGGAGCAAACATAAAGCTTTTGGCTATATGGAATGGAATTCTGGAAAAAGC----AGAAAAAAAATTATCAAGATGGAAGGCTTAGTATTTATCCTTGGGGGGTAGAGTGATCTTGATTAACTTTG-TTTAGATTTACTGCCTACTTATGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAAAACTGGATAGACTGAGAAGAAACTTCCT-TTGGAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTAAAATGAAACACTGTGATGCTAAGCAAAGAAAGAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTTGAGTTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392161" ref_strand="+" ref_description="SGN-E392161 [TUS-34-G17]">
      <seq>agcaaacataaagcttttggctatatggaatggaattctggaaaaagcagaaaaaaaattatcaagatggaaggcttagtatttatccttggggggtagagtgatcttgattaactttgtttagatttactgcctacttatgttatgtcgttatttccaattcctccaataattatcaaaaaactggatagactgagaagaaacttcctttggaaaaaggtaaagagggagaaagcaagggttactatttagtaaaatgaaacactgtgatgctaagcaaagaaagagggggactgggtattagaaatttgagaatccaaaacaagagccttttgatgaagtggttgttgagttatactggtgaggaaggaaccctgagaaaggaggtgatagtagcaaagtatggggaattgaacccatggtgtacatagatagtgtcagtttcctatggataggaagtatggaggataatcagaggtttatggaactctatggaagaaaatgtgttgctcaaagttggaaatggcaacaagattaagttttggagagatggatggattgatcaagttcctctaagtagatcattccgggtcttttctcaatatgcaacaaccctgaagcagagtatgtgaatgttggacaactcaaggttggtctaactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="85212" stop="86425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85466" g_stop="86126" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E392161" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85466" e_stop="86126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACATAAAG-TTTTGG-TATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTGAGTCATTCCCAGATCTTTTCTCAATCTGCAACAACCCTGAAGCCAGAGTATGTGAATGCTGGACAACTCAAGGCTGGG</genome_strand>
        <mrna_strand>AGCAAACATAAAGCTTTTGGCTATATGGAATGGAATTCTGGAAAAAGC----AGAAAAAAAATTATCAAGATGGAAGGCTTAGTATTTATCCTTGGGGGGTAGAGTGATCTTGATTAACTTTG-TTTAGATTTACTGCCTACTTATGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAAAACTGGATAGACTGAGAAGAAACTTCCT-TTGGAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTAAAATGAAACACTGTGATGCTAAGCAAAGAAAGAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTTGAGTTATACTGGTGAGGAAGGAACCCTGAGAAAGGAGGTGATAGTAGCAAAGTATGGGGAATTGAACCCATGGTGTACATAGATAGTGTCAGTTTCCTATGGATAGGAAGTATGGAGGATAATCAGAGGTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAACAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTAGATCATT-CCGGGTCTTTTCTCAATATGCAACAACCCTGAAG-CAGAGTATGTGAATGTTGGACAACTCAAGGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369525" ref_strand="+" ref_description="SGN-E369525 [TUS-23-O9]">
      <seq>gcaaacataaagcttttggctatatggaatggaattctggaaaaagcagaaaaaaaattatcaagatggaaggcttagtatttatccttggggggtagagtgatcttgattaactttgtttagatttactgcctacttatgttatgtcgttatttccaattcctccaataattatcaaaaaactggatagactgagaagaaacttcctttggaaaaaggtaaagagggagaaagcaagggttactatttagtaaaatgaaacactgtgatgctaagcaaagaaagagggggactgggtattagaaatttgagaatccaaaacaagagccttttgatgaagtggttgttgagttatactggtgaggaaggaaccctgagaaaggaggtgatagtagcaaagtatggggaattgaacccatggtgtacatagatagtgtcagtttcctatggataggaagtatggaggataatcagaggtttatggaactctatggaagaaaatgtgttgctcaaagttggaaatggcaacaagattaagttttggagagatggatggattgatcaagttcctctaagtagatcattccgggtcttttctcaatatgcaacaaccctgaagcagagtatgtgaatgttggacaactcaaggttggtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="85212" stop="86425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85467" g_stop="86126" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E369525" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85467" e_stop="86126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACATAAAG-TTTTGG-TATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTGAGTCATTCCCAGATCTTTTCTCAATCTGCAACAACCCTGAAGCCAGAGTATGTGAATGCTGGACAACTCAAGGCTGGG</genome_strand>
        <mrna_strand>GCAAACATAAAGCTTTTGGCTATATGGAATGGAATTCTGGAAAAAGC----AGAAAAAAAATTATCAAGATGGAAGGCTTAGTATTTATCCTTGGGGGGTAGAGTGATCTTGATTAACTTTG-TTTAGATTTACTGCCTACTTATGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAAAACTGGATAGACTGAGAAGAAACTTCCT-TTGGAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTAAAATGAAACACTGTGATGCTAAGCAAAGAAAGAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTTGAGTTATACTGGTGAGGAAGGAACCCTGAGAAAGGAGGTGATAGTAGCAAAGTATGGGGAATTGAACCCATGGTGTACATAGATAGTGTCAGTTTCCTATGGATAGGAAGTATGGAGGATAATCAGAGGTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAACAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTAGATCATT-CCGGGTCTTTTCTCAATATGCAACAACCCTGAAG-CAGAGTATGTGAATGTTGGACAACTCAAGGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247088" ref_strand="+" ref_description="SGN-E247088 [cLEF-41-F10]">
      <seq>gcaaacataaagcttttggctatatggaatggaattctggaaaaagcagaaaaaaaattatcaagatggaaggcttagtatttatccttggggggtagagtgatcttgattaactttgtttagatttactgcctacttatgttatgtcgttatttccaattcctccaataattatcaaaaaactggatagactgagaagaaacttcctttggaaaaaggtaaagagggagaaagcaagggttactatttagtaaaatgaaacactgtgatgctaagcaaagaaagagggggactgggtattagaaatttgagaatccaaaacaagagccttttgatgaagtggttgttgagttatactggtgaggaaggaaccctgagaaaggaggtgatagtagcaaagtatggggaattgaacccatggtgtacatagatagtgtcagtttcctatggataggaagtatggaggataatcagaggtttatggaactctatggaagaaaatgtgttgctcaaagttggaaatggcaacaagattaagttttggagagatggatggattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="85212" stop="86332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85467" g_stop="86032" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E247088" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85467" e_stop="86032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACATAAAG-TTTTGG-TATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGAT</genome_strand>
        <mrna_strand>GCAAACATAAAGCTTTTGGCTATATGGAATGGAATTCTGGAAAAAGC----AGAAAAAAAATTATCAAGATGGAAGGCTTAGTATTTATCCTTGGGGGGTAGAGTGATCTTGATTAACTTTG-TTTAGATTTACTGCCTACTTATGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAAAACTGGATAGACTGAGAAGAAACTTCCT-TTGGAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTAAAATGAAACACTGTGATGCTAAGCAAAGAAAGAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTTGAGTTATACTGGTGAGGAAGGAACCCTGAGAAAGGAGGTGATAGTAGCAAAGTATGGGGAATTGAACCCATGGTGTACATAGATAGTGTCAGTTTCCTATGGATAGGAAGTATGGAGGATAATCAGAGGTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAACAAGATTAAGTTTTGGAGAGATGGATGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247066" ref_strand="+" ref_description="SGN-E247066 [cLEF-41-L7]">
      <seq>tctggaaaaagcagaaaaaaaattatcaagatggaaggcttagtatttatccttggggggtagagtgatcttgattaactttgtttagatttactgcctacttatgttatgtcgttatttccaattcctccaataattatcaaaaaactggatagactgagaagaaacttcctttggaaaaaggtaaagagggagaaagcaagggttactatttagtaaaatgaaacactgtgatgctaagcaaagaaagagggggactgggtattagaaatttgagaatccaaaacaagagccttttgatgaagtggttgttgagttatactggtgaggaaggaaccctgagaaaggaggtgatagtagcaaagtatggggaattgaacccatggtgtacatagatagtgtcagtttcctatggataggaagtatggaggataatcagaggtttatggaactctatggaagaaaatgtgttgctcaaagttggaaatggcaacaagattaagttttggagagatggatggattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="85212" stop="86332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85500" g_stop="86032" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E247066" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85500" e_stop="86032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGAT</genome_strand>
        <mrna_strand>TCTGGAAAAAGC--AGA--AAAAAAATTATCAAGATGGAAGGCTTAGTATTTATCCTTGGGGGGTAGAGTGATCTTGATTAACTTTG-TTTAGATTTACTGCCTACTTATGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAAAACTGGATAGACTGAGAAGAAACTTCCT-TTGGAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTAAAATGAAACACTGTGATGCTAAGCAAAGAAAGAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTTGAGTTATACTGGTGAGGAAGGAACCCTGAGAAAGGAGGTGATAGTAGCAAAGTATGGGGAATTGAACCCATGGTGTACATAGATAGTGTCAGTTTCCTATGGATAGGAAGTATGGAGGATAATCAGAGGTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAACAAGATTAAGTTTTGGAGAGATGGATGGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731811" ref_strand="+" ref_description="SGN-E731811 [LA28BA07]">
      <seq>gtttggtgatgtacagaaagatcatcaagccatagatattcttttagctgaaatagatatatatgaactatttgctttcaatcattgcaagggaaggaaggtcaagcttgctctttgtgaagagcttgacgagagaatgcaagatttgaaaaatgagctgcaatcttttgagggtgaggggtctgatgaaagccataggacaaaggctgtagatgcactgaaaaggatggagaactggaacctgtttagtgaatcttatgaggactacaaaaattatacagttgctcgtgacactttccttgcacatttgggggcaaccttatgggggtcaatgagacacatcatttctccatcacttgctgatggggcattccactactatgagaaaatctcttttcagttattctttatcacacaggagaaatttagaaatattaagcagttacctgttgacctcaaaactatcatgaatggtctttcatcattggtcctatcttctcaggaagtgatgttcagtccgcacatgttgccgctgtcagaggatcctgctttagctatggcgttttcagtagcccggagagcggcagctgttcccctgttgcttgtgaatggaacgtataggaaaacggttcgttcctatctggattcctccattctccaacatcagttgcagagattgaatgatcatggttctttgaaaggttcacatgcacatagcagatctaccccttgaagtcccctatcttttggtttattcatagtgatcccttgttagttgacaagcattatcaagccaaagcgctttccgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="90180" stop="96609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90489" g_stop="90600" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="122" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90601" i_stop="90788" i_length="188">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90789" g_stop="90928" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="262" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90929" i_stop="91119" i_length="191">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91120" g_stop="91278" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="421" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91279" i_stop="91346" i_length="68">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91347" g_stop="91450" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="525" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91451" i_stop="91724" i_length="274">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91725" g_stop="91900" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="701" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91901" i_stop="96199" i_length="4299">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96200" g_stop="96309" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="813" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E731811" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90489" e_stop="90600"/>
          <exon e_start="90789" e_stop="90928"/>
          <exon e_start="91120" e_stop="91278"/>
          <exon e_start="91347" e_stop="91450"/>
          <exon e_start="91725" e_stop="91900"/>
          <exon e_start="96200" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAGAAAGATCATCAAGCCATAGATATTCTTTTAGCTGAAATAGATATATATGAACTATTTGCTTTCAATCATTGCAAGGGAAGGAAGGTCAAGCTTGCTCTTTGTGAAGGTACCCTTGTCATTTATTGTAGAATCCTGCATAATTCATATGAAAATCGTTCAGTTTGACCATCTGACTATCTACGTATCCAGTGTTGATTTTGTCTAGGTTTCCCTGTTCTTTTGGAAAGTTTCAAACTTTTTTTTATTAGTTTATCTTTATTTGAGGAAATTCATGAGTGTTAATCATCATACCAGAGCTTGACGAGAGAATGCAAGATTTGAAAAATGAGCTGCAATCTTTTGAGGGTGAGGGGTCTGATGAAAGCCATAGGACAAAGGCTGTAGATGCACTGAAAAGGATGGAGAACTGGAACCTGTTTAGTGAATCTTATGAGGTATCTTACTTTTGCTAAGTCGTATTCAGTAACTTCTATGAGAAGGCTAAACTATTGTTGCTGTTTTGATATTGTTCTTTTGTCCGAAAAAAATTGCCGTTGCTTGTAGTTGCATTGTTTCTTTCACATGGGATGATGATAATACATAAGAATGATATTGAATATCAGTGATCAAAAACCTGGTCATGCAGGACTACAAAAATTATACAGTTGCTCGTGACACTTTCCTTGCACATTTGGGGGCAACCTTATGGGGGTCAATGAGACACATCATTTCTCCATCACTTGCTGATGGGGCATTCCACTACTATGAGAAAATCTCTTTTCAGTTATTCTTTATCACACAGGAGGTATGATGTTAATTTAAATTAAACTAACGATATTGCTTTGTACTTACATAATCTGTGTGTTTGTGCAGAAATTTAGAAATATTAAGCAGTTACCTGTTGACCTCAAAACTATCATGAATGGTCTTTCATCATTGGTCCTATCTTCTCAGGAAGTGATGTTCAGTCCGCACATGTAAGCATTTGGTTCATTCTCTTATTCATTGGTCCTTCCAGATACATATTGTTCTCTATATATGTCTCAAGCCAAATGTAGGTTAGTTATATGTTGAGTTGTAAAGGTAAAAGTGTTAAATACAGATATTGTATTGAATGATTATCCGCTTAAGTGTATATTTTATTTCTGCTTCATGGATTTAGCTTACTCTCGTCTTTAATTATGTGTTCTTGTTCTAAATATACCCTCTGGATACGTGCCCCTATTTATTTTAGTCTGTTATGTTTCACAGGTTGCCGCTGTCAGAGGATCCTGCTTTAGCTATGGCGTTTTCAGTAGCCCGGAGAGCGGCAGCTGTTCCCCTGTTGCTTGTGAATGGAACGTATAGGAAAACGGTTCGTTCCTATCTGGATTCCTCCATTCTCCAACATCAGTTGCAGAGATTGAATGATCATGGTTCTTTGAAAGGTGAGCTTTTGTGATCACAAGTTTATAGTAGTGCTTGTTGAGGTAGAAAAAACACACGGCCAACTCTCCTTAAGTCCGACATCATTTGAGAGGGAAAGAAGAGACATCGAGGGTGATTAATTAGAAAATCGAAGTCTTTGTTTTCCTCCCTGTAGATTTATATTCGGGGTGGGCTGGAGGATAATGAGTAAATCTTATATGGATATTAATTATCTTAGTAGTCATTTGTTTTTTTCCAACTTGTACTTTAAGGGGTCGTTTTTTCTGAGGATAAGGGGTAATAATCCCAGGATAAAATGCTTATTTCACCCTGTGTTCATTTAGGGGTATTAGTTAGCCCCGAGATTATTTCTTCCGCCATTTGTACTATAATGATGGGATAAGTTATCCCATATATATGATGGGATATCCGATCCCATGGGATAACTTTGTCTATCCAATCCCCCATGCCAAACAACCCTCAACAAAATATGGTTATTCTTTGTCCATTCTTAGTTCTTATAACCATTTGAAGTGAAATGAATTCTAGATATGCTTGTGTACAAAGTTATTAGTATGTAACAATATGAAGATTTTGAAGGTGAATAAGGCCTCATTTTTGTTTATTAAAGTTGAGACATCTGTACATATCTGATTATTATGATGTATATTAAGATTTGAGATGTTTGAAACTAGATATACATCTTAATATTAAGATGTTTATTAAAATATGAATACTAAATAATTAAGATGGTTTATTTTCTCTACGTCTGAATGCAAAAAATCTTGTCTCTGTTAAAAAAATAATAAATATAATATAAAATACTAATTTATTTAATACCATATTTTGAAAATATTACATGGTGGTCCATAGTTGCAATAACTTATGGTGGTGGTTAGTGGTGCTGTTGGTTGATGGAGTTGATACGTTGTTAGCCTATAAAGTGGCGGAGCCAAAACTTTGATTAAGGGGTGTCAAAATATAAAGAAGTAAAACTGTGTAGAAGTCAAGGAGTGTTAATATGTAATATATATTACATAAAAAATATTTTTACTCTAGCTACACAGTGTAATTTCTGACAAAGGGGTGTCAGTCGACACCGGCTCTGCAACTGAGCCTATAGGGGTGGAACTACAGTGTCAGCTCCGTCTATCACTCTGTCAGAGTCGAAGGTTAACTTCAGCTAGATTATCTGTAAGGAGAAAGCAAGAAGGAGCAGCGTCAGTCACACTGACATATTGGTTAATAACCTCAACCACAGCTTTATACCTGGAACAAGCATATGTAAGAAGTCATGCAGTTCAGAAATCATCAACAATAACTTCTTTCAATCAACTAAGCAAATTCATGTATGAAAATTGTATTCAAGTTGTTTGAATAATCACATCGTTATCTATTGGGAGGATCCCTAGGATCGAGTATACTTTCTGACACTATGGATTTACCATAGCCGTCTTACTACCCCGTCAGTTAGGTTCCCTTCTGGAGGGTCTTTATAGTTTATACAACATTAGTTTTTCTTACCAGGTGCACCAGGTCTAACAATCCCAACATTAGATAACAATGAAACTGACAAAGTTAACTTCCTGATATAGTTTATTCATAATTCCACATATATTTATATTCTTCTTGTGTCATCTTTGAATCCAACAATATATAATAACTCGGAAATAGCATAAATTCAAGAATATTTATTTTTTATTTTTTTTGAGAATGGTAACAGTTATATATCCACAGATATACTACAACAAAATATGTAGCCCCCCTTCAAAAGTATTACAACTTACAGCTTGAACTTCTATCTCTTGTTCCTTAAACAGTCTAATACGTCAAAAATATCTTCTGTTTGAGCTATTAATTTCTGTTTACACCAAAAATAAAACAGAGCTAAACAATTTTTTTAGAACTCCTGCAAGTTGCTCCGGCTTGTCTTCAAAACATCTCCTATCCTTTCTTTCAACATTGTCTACAAATGCATGTAGGGATCTTCCATCTTTCTTCCTTTTTTTTGATAACCGAAAAAACCGTCTGTGACCCGCCCTTTGGACCAATCACAGCCTTCTAAACTCGGTGGATTATGGGCCAGCCCCTCTACCCTTCTCCACTTAAATACCGTACCTCGCTTTGCATGGTGTGGCTTGAACCTGCGACCTAAGCCACAAATCCTCCACCTTTTGCCACTCAAGCTACGCCTTGGGGGCCATCTTCTTTCCTTTTTGACTGCATTGCCATCCTTGTTCCAGCAGTTTAACTATCCTTTTATGTTCCCTGGCCTCACCCACTTGGTCCTCTGCAGATAAATGAGTATCTTCCGCAACTGGAATGTGCAAACTTCCTATAGTATCTTTGTAATAGCCTCCCCGTTAGCTTTGTTTTCCGGGGAGGCACTACATCAGTCATCAGTTTTCCATGTATGTAGAATGTTTCTGATTAGCCTCCTTTTTATGCCACAATTTAGCCCCCTAACATTCCAAGGCACAAATTCAAGAGTAATTAGTATGTAAACTCATGGTAAAAGTGATTTAGTACATTTCAAATATTTAATCATATTCTCGCTTGTCCATGAGAAAAATGAACTTTTGGATTAATCATTTCAATGCAAAATACAAATAAAAAACATGCTATAGTTGAAAATTGACTGTACTTCCGCTGAAATAGCTGAAACCTTGCTTCCAATAATTATGTTGCAAAATTCCAATAATCTAAATTCACGACATAATATTTAGATCTTATTTATCCCAAAAACTCATGATTTATTTAAAGACCACCACCACCACCATTACTGTTTCAACCTAAATTTTTAGCTTAAGAACATGATATCTTCAATCTTTATTAACAGGTTATGATGTGGAACTTTGAATTTACAAGAAAGTTATTATCCCCTAATTTTGATACCAAATTCAGCTTTTAGGTTGTCTTCCCAAAGTTGGAACTCTTAAAAGAAAATTTCAGATTTTATTTAATCCTAAAAAATCCCAGTTGTTAATACTACTTCTCCTAACCAGAGGATGAATTCATGGTGAATATGTATGTCAAGAATTTGTAAAAGCAATCTCAAAAAGGAAAGACCGAACTTGTAAAAGTCAAGAATGGAGAGAAGTGGTTGGGTGTCCTCAATTCTGATTGTCTCTGCTATCCTCTTCATTTCCCCCCTTCTCTCTTCTGTATATCTCCTTTCCTCTCTTTTTTTCCCTTCTGAAAATCACTGCTGTTGGACAGCTTGGTTTGAAACCAGCAGTGCTACTTCTTTTTTTTTTTTTGGATGAAGTCCAAAGATTTCATTAGAAGGCATAAGAAGATGCTGGGCAAAAAATTACACCAAAAGAAGGGGTCTGCTTCTGTACGAGAATTTACTAATAACTTAAGAGCAGACATAGTCCAAAATAAGTTCAATAGTGGTTACGGGGGTCTGCTTTAAGAAGACCAAACAGTTTTATTTGTTGACTGCTTCTTCTCCTTTTTTCAAAAGCTGCAGCCTTTTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCGATTACTATTTAAAATCATTATGGAGGTGGTTTTTAACTTAGGACTTAAGTTGTTTAATGGCTTGAGGTTGGTATTTTAATTGGTTAGTTGTTTTAAATGGGCAAAGCCCAATTCTTTAAGTCATTATATGGTGATGGTGATTGAAAATAGTAGTTAATGGTGGGGGCGGCTGATAATTGTGGTGGATCATTATTGTAGCTTATGGTTGTGGAGACGACAAATAATGGTGGTTGATGGTGGTGATTGTCAATAGTGATTGGTGGTTGTTATGATATAGTGGTGGGTGGTGATCATTGTAATGGTGGCTAGTGGCAGTGTCAGTTTATTGTGATGATTGGGGGCAGTGGTAGTTGATAAAGGTGGACAATCATGATGATTAACAATGAAAATGGATGAAGTAGCGGTGAAATGCCATCTTTACAGAATATATGAAGCATAGCATCTAGTGATATTAATTTTTTATTATAGATCTCAACTATTCAACTATATTCAGATCCGTTAAGTGGTTGTAAAAGAAAAAGTACAAAAGCACTTAATGATTAAGATTCAAATCTAAAAACACACACACATAATGGTTGACTTAGATCTAAAGGATTAAGACTTGATTAGACCTTCAGTAGCTGCAAACGAGGCTTAAGAACAATTATATAATCTTGTTATTTGTTTTATGTGATGGTTCAAGAGCCTTTAAATGCTCATTCATGTCTGCAATCCTCTCCGCCCTCTCTTCTTTTGGGTTTTAAGCTGGTTAGGGCTTGTGTTTTGCAAATTATAGTGCTTTGATTTCCTTCATACTGCAGGTTCACATGCACATAGCAGATCTA-CCCTTGAAGT-CCCTATCTTTTGGTTTATTCATAGTGATCCCTTGTTAGTTGACAAGCATTATCAAGCCAAAGCGCTTTCCGATATG</genome_strand>
        <mrna_strand>GTACAGAAAGATCATCAAGCCATAGATATTCTTTTAGCTGAAATAGATATATATGAACTATTTGCTTTCAATCATTGCAAGGGAAGGAAGGTCAAGCTTGCTCTTTGTGAAG............................................................................................................................................................................................AGCTTGACGAGAGAATGCAAGATTTGAAAAATGAGCTGCAATCTTTTGAGGGTGAGGGGTCTGATGAAAGCCATAGGACAAAGGCTGTAGATGCACTGAAAAGGATGGAGAACTGGAACCTGTTTAGTGAATCTTATGAG...............................................................................................................................................................................................GACTACAAAAATTATACAGTTGCTCGTGACACTTTCCTTGCACATTTGGGGGCAACCTTATGGGGGTCAATGAGACACATCATTTCTCCATCACTTGCTGATGGGGCATTCCACTACTATGAGAAAATCTCTTTTCAGTTATTCTTTATCACACAGGAG....................................................................AAATTTAGAAATATTAAGCAGTTACCTGTTGACCTCAAAACTATCATGAATGGTCTTTCATCATTGGTCCTATCTTCTCAGGAAGTGATGTTCAGTCCGCACAT..................................................................................................................................................................................................................................................................................GTTGCCGCTGTCAGAGGATCCTGCTTTAGCTATGGCGTTTTCAGTAGCCCGGAGAGCGGCAGCTGTTCCCCTGTTGCTTGTGAATGGAACGTATAGGAAAACGGTTCGTTCCTATCTGGATTCCTCCATTCTCCAACATCAGTTGCAGAGATTGAATGATCATGGTTCTTTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCACATAGCAGATCTACCCCTTGAAGTCCCCTATCTTTTGGTTTATTCATAGTGATCCCTTGTTAGTTGACAAGCATTATCAAGCCAAAGCGCTTTCCGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236841" ref_strand="+" ref_description="SGN-E236841 [cLEL-7-M20](-)">
      <seq>gtctccatccagtacattgcacccgtcgaagagaagttaaggtcgagtttgacatgacaacaatacctgctttcctcgttgttttcttcgttctttggtttgtgctaaagcctagaagagccaagcccaagatcaactgagagtttcgtggttggcatgccttgaaaatgcgtgttaaacttagtttcctcaagcatgatttcccctgctggggaactctgttgagccaatagagctgtcttacgcaacactggactagaaagcataggcaagataggtagaatagctaggtcaaaatcatagtgtctttgctttgtaaattttcacctcccagtattattacagctgagattttgctcgggatcatcaagtcttattttttcttgttagtaactattgtaattgtgctcagtgcatgccttaatactgtgtacatctcaacaaatgatatcattggttacaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="99607" stop="100682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99907" g_stop="100389" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E236841" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99907" e_stop="100389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCATCCAGTACATTGCACCCGTCGAAGAGAAGTTAAGGTCGAGTTTGACATGACAACAATACCTGCTTTCCTCGTTGTTTTCTTCGTTCTTTGGTTTGTGCTAAAGCCTAGAAGAGCCAAGCCCAAGATCAACTGAGAGTTTCGTGGTTGGCATGCCTTGAAAATGCGTGTTAAACTTAGTTTCCTCAAGCATGATTTCCCCTGCTGGGGAACTCTGTTGAGCCAATAGAGCTGTCTTACGCAACACTGGACTAGAAAGCATAGGCAAGATAGGTAGAATAGCTAGGTCAAAATCATAGTGTCTTTGCTTTGTAAATTTTCACCTCCCAGTATTATTACAGCTGAGATTTTGCTCGGGATCATCAAGTCTTATTTTTTCTTGTTAGTAACTATTGTAATTGTGCTCAGTGCATGCCTTAATACTGTGTACATCTCAACAAATGATATCATTGGTTACAATTTACAATAGCAATGTGAAC</genome_strand>
        <mrna_strand>GTCTCCATCCAGTACATTGCACCCGTCGAAGAGAAGTTAAGGTCGAGTTTGACATGACAACAATACCTGCTTTCCTCGTTGTTTTCTTCGTTCTTTGGTTTGTGCTAAAGCCTAGAAGAGCCAAGCCCAAGATCAACTGAGAGTTTCGTGGTTGGCATGCCTTGAAAATGCGTGTTAAACTTAGTTTCCTCAAGCATGATTTCCCCTGCTGGGGAACTCTGTTGAGCCAATAGAGCTGTCTTACGCAACACTGGACTAGAAAGCATAGGCAAGATAGGTAGAATAGCTAGGTCAAAATCATAGTGTCTTTGCTTTGTAAATTTTCACCTCCCAGTATTATTACAGCTGAGATTTTGCTCGGGATCATCAAGTCTTATTTTTTCTTGTTAGTAACTATTGTAATTGTGCTCAGTGCATGCCTTAATACTGTGTACATCTCAACAAATGATATCATTGGTTACAATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236743" ref_strand="+" ref_description="SGN-E236743 [cLEL-7-M10](-)">
      <seq>tgctttcctcgttgttttcttcgttctttggtttgtgctaaagcctagaagagccaagcccaagatcaactgagagtttcgtggttggcatgccttgaaaatgcgtgttaaacttagtttcctcaagcatgatttcccctgctggggaactctgttgagccaatagagctgtcttacgcaacactggactagaaagcataggcaagataggtagaatagctaggtcaaaatcatagtgtctttgctttgtaaattttcacctcccagtattattacagctgagattttgctcgggatcatcaagtcttattttttcttgttagtaactattgtaattgtgctcagtgcatgccttaatactgtgtacatctcaacaaatgatatcattggttacaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="+" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="99674" stop="100682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99974" g_stop="100389" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="+" ref_id="SGN-E236743" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99974" e_stop="100389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCCTCGTTGTTTTCTTCGTTCTTTGGTTTGTGCTAAAGCCTAGAAGAGCCAAGCCCAAGATCAACTGAGAGTTTCGTGGTTGGCATGCCTTGAAAATGCGTGTTAAACTTAGTTTCCTCAAGCATGATTTCCCCTGCTGGGGAACTCTGTTGAGCCAATAGAGCTGTCTTACGCAACACTGGACTAGAAAGCATAGGCAAGATAGGTAGAATAGCTAGGTCAAAATCATAGTGTCTTTGCTTTGTAAATTTTCACCTCCCAGTATTATTACAGCTGAGATTTTGCTCGGGATCATCAAGTCTTATTTTTTCTTGTTAGTAACTATTGTAATTGTGCTCAGTGCATGCCTTAATACTGTGTACATCTCAACAAATGATATCATTGGTTACAATTTACAATAGCAATGTGAAC</genome_strand>
        <mrna_strand>TGCTTTCCTCGTTGTTTTCTTCGTTCTTTGGTTTGTGCTAAAGCCTAGAAGAGCCAAGCCCAAGATCAACTGAGAGTTTCGTGGTTGGCATGCCTTGAAAATGCGTGTTAAACTTAGTTTCCTCAAGCATGATTTCCCCTGCTGGGGAACTCTGTTGAGCCAATAGAGCTGTCTTACGCAACACTGGACTAGAAAGCATAGGCAAGATAGGTAGAATAGCTAGGTCAAAATCATAGTGTCTTTGCTTTGTAAATTTTCACCTCCCAGTATTATTACAGCTGAGATTTTGCTCGGGATCATCAAGTCTTATTTTTTCTTGTTAGTAACTATTGTAATTGTGCTCAGTGCATGCCTTAATACTGTGTACATCTCAACAAATGATATCATTGGTTACAATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375586" ref_strand="+" ref_description="SGN-E375586 [TUS-34-N24](-)">
      <seq>tagggaccttcacccttgctggtgtttattgtccagagatttatccaacctcagttagatcaactggttgtggagttgcaagtgctgtggggagaattgcagggatggtctctcctatagttgcagtgcaattggttagaggttgccaccagatggctgcaatcattttatttgaagtggttgttattttatcagcaattagtgttctgctctttccagttgagaccaaggggcgtgagcttgttgatcatgtctctgtataggaaatcgtataccaattactatgttatgttaatgtgttctccacattggagggaaatctattgaagacacagctctctaagtcatgttggtactatttacagtatcatgttccaacctcaaatttcgttaatcatgtaagatgttatcttatcaatgtatagaagttaaataaaaaaagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="102397" stop="100493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102097" g_stop="102060" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102059" i_stop="101189" i_length="871">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101188" g_stop="100795" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="432" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E375586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102097" e_stop="102060"/>
          <exon e_start="101188" e_stop="100795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGACCTTCACCCTTGCTGGTGTTTATTGTCCAGAGGTGAGTGTCACTCTTTACCTTCTATCTTTCTTAGCTTCATTGTTCTGACTTGTTCAATGTCTTGACATGTCAACTTATTTTGATCCCTACCAGTCTAAACTTGATAGATAGATATTCCTTGTGTTTCATGTATTCAATTGAACAGAGAATTTTGAACTTCTACCTTTCACATATTAAAAGTTTGACTTTGTAAGAGTTTTTTTTTTCCACTGGAACTGTGTTTTATTTGTTTGACGTGGCAAACAACATTTATGTTCATTACTGGGAATCTCAAACTGTTTACTGGATGAATCTTTATGCGCATCGACTTTTTTTTTATGGGTGTATTGACTTGCAAACCGAATTGATTTTAGGACATTAGGGCTGGCTCCCTTGTTTATTGAAGCTGTTGCACGTATTTTACAGATACTTGATTGTATTAGCATAGAGTTCTAAAGAGAAGACTGAACATGGTTACTAAAGCTGATCAGTTTTAGCAATTTTGTCACAATTTAAGAACCATTTGCCTTTTTATATATAAATAAACTATCAATATCATAGTGGATCTTCTTCAGGTAAATACATTGAGTTTTCAGGTTGTAATGAGGAATAAACGTAGATTAGTCCAATTTCCAAGCTCTTTTAGCTTTGAGGTTCTCTTGGCCTGTTCTACCTGTTCTTCTTTGATGGCTGAGGAACCTTTGGTAGGGTGAGAGGATCAAGCTACTCCTGTCATAGCCTTGTTTGAAGTATGAATATAAAGGTTTTAAACATTTAATCTGACATTTTAGTAAATTCCCATCTAAAGTTGTAGATTGGAACAAACTCTTCAGACAAATGACAGAATTTTATGTTAGGAGGCCTAAGTGTCATTTTGATCTATTTTCTGCAGATTTATCCAACCTCAGTTAGATCAACTGGTTGTGGAGTTGCAAGTGCTGTGGGGAGAATTGCAGGGATGGTCTCTCCTATAGTTGCAGTGCAATTGGTTAGAGGTTGCCACCAGATGGCTGCAATCATTTTATTTGAAGTGGTTGTTATTTTATCAGCAATTAGTGTTCTGCTCTTTCCAGTTGAGACCAAGGGGCGTGAGCTTGTTGATCATGTCTCTGTATAGGAAATCGTATACCAATTACTATGTTATGTTAATGTGTTCTCCACATTGGAGGGAAATCTATTGAAGACACAGCTCTCTAAGTCATGTTGGTACTATTTACAGTATCATGTTCCAACCTCAAATTTCGTTAATCATGTAAGATGTTATCTTATCAATGTATAGAAGTTAA</genome_strand>
        <mrna_strand>TAGGGACCTTCACCCTTGCTGGTGTTTATTGTCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCCAACCTCAGTTAGATCAACTGGTTGTGGAGTTGCAAGTGCTGTGGGGAGAATTGCAGGGATGGTCTCTCCTATAGTTGCAGTGCAATTGGTTAGAGGTTGCCACCAGATGGCTGCAATCATTTTATTTGAAGTGGTTGTTATTTTATCAGCAATTAGTGTTCTGCTCTTTCCAGTTGAGACCAAGGGGCGTGAGCTTGTTGATCATGTCTCTGTATAGGAAATCGTATACCAATTACTATGTTATGTTAATGTGTTCTCCACATTGGAGGGAAATCTATTGAAGACACAGCTCTCTAAGTCATGTTGGTACTATTTACAGTATCATGTTCCAACCTCAAATTTCGTTAATCATGTAAGATGTTATCTTATCAATGTATAGAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375587" ref_strand="+" ref_description="SGN-E375587 [TUS-34-N24]">
      <seq>ctgtagttttttatatgttgacagtttgtagtgctcccaaacagttagtaattaatgaaaaaaatgaaaacaaagaagagtctatatcttactatatttgtaatatttgaaaaacttagtgcaacttgcttggtatttcttgcagattatcatgccaagactaggttggagatggttattggctttatcgtctataccatcatttgcagcttttctcttgtacatttttactgtagagtctcctagatatctatgtgccgaaggtagaataactgatgcacatgatattttgaggaaaatagctgttgttaatcagacaaaacttccccctgggatgcttgtttctgatcaagtgatagagctggatgaggaacagaaattgcttaggccgagagccaacaaaatcttcaattttaagacaggattgtcttcatccctgatgcttttatccccacaattactacgaattaccctcctcatgtgggtggtttattttggaaattcatttgcctattatggcattatattgctgacatcacagtttagtgctggggaaaatagatgcttctcagttgctttgcatgtgaaaaatgattcaagcctctatacagacgtgtttattactagccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="103305" stop="102072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103005" g_stop="102372" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E375587" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103005" e_stop="102372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGTTTTTTAT-TGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTGGCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATATTGCTGACATCACAGTTTAGTGCTGGGGAAAATAGATGCTTCTCAGTTGCTTTGCATGTGAAAAATGATTCAAGCCTCTATACAGACGTGTTCATCACTAGCCTTGCTG</genome_strand>
        <mrna_strand>CTGTAGTTTTTTATATGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTGGCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATATTGCTGACATCACAGTTTAGTGCTGGGGAAAATAGATGCTTCTCAGTTGCTTTGCATGTGAAAAATGATTCAAGCCTCTATACAGACGTGTTTATTACTAGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255322" ref_strand="+" ref_description="SGN-E255322 [cLEG-30-A20]">
      <seq>ctgtagttttttattgttgacagtttgtagtgctcccaaacggttagtggttaatgaaaaaaatgaaaacaaagaagagtctatatcttactatatttgtaatatttgaaaaacttagtgcaacttgcttggtatttcttgcagattatcatgccaagactaggttggagatggttattggctttatcgtctataccatcatttgcagcttttctcttgtacatttttactgtagagtctcctagatatctatgtgccgaaggtagaataactgatgcacatgatattttgaggaaaatagctgttgttaatcagacaaaacttccccctgggatgcttgtttctgatcaagtgatagagctggatgaggaacagaaattgcttaggccgagagccaacaaaatcttcaattttaagacaggattgtcttcatccctgatgcttttatccccacaattactacgaattaccctcctcatgtgggtggtttattttggaaattcatttgcctattatggcattatattgctgacatcacagtttagtgctggggaaaatagatgcttctcagttgctttgcatgtgaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="103305" stop="102113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103005" g_stop="102413" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E255322" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103005" e_stop="102413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTGGCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATATTGCTGACATCACAGTTTAGTGCTGGGGAAAATAGATGCTTCTCAGTTGCTTTGCATGTGAAAAATGA</genome_strand>
        <mrna_strand>CTGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACGGTTAGTGGTTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTGGCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATATTGCTGACATCACAGTTTAGTGCTGGGGAAAATAGATGCTTCTCAGTTGCTTTGCATGTGAAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255108" ref_strand="+" ref_description="SGN-E255108 [cLEG-31-F6]">
      <seq>ctgtagttttttattgttgacagtttgtagtgctcccaaacagttagtaattaatgaaaaaaatgaaaacaaagaagagtctatatcttactatatttgtaatatttgaaaaacttagtgcaacttgcttggtatttcttgcagattatcatgccaagactaggttggagatggttattaggcccttttgtatcgtctatgccatcatttgcagcttttctcttgtacatttttactgtagagtctcctagatatctatgtgccgaaggtagaataactgatgcacatgatattttgaggaaaatagctgttgttaatcagacaaaacttccccctgggatgcttgtttctgatcaagtgatagagctggatgaggaacagaaattgcttaggccgagagccaacaaaatcttcaattttaagacaggattgtcttcatccctgatgcttttatccccacaattactacgaattaccctcctcatgtgggtggtttattttggaaattcatttgcctattatggcattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="103305" stop="102181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103005" g_stop="102481" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E255108" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103005" e_stop="102481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATT-GG--C--TT-TATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATA</genome_strand>
        <mrna_strand>CTGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTAGGCCCTTTTGTATCGTCTATGCCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253844" ref_strand="+" ref_description="SGN-E253844 [cLEG-28-L17]">
      <seq>tgtagttttttattgttgacagtttgtagtgctcccaaacagttagtaattaatgagggaaaatgaaaacaaagaagagtctatatcttactatatttgtaatatttgaaaaacttagtgcaacttgcttggtatttcttgcagattatcatgccaagactaggttggagatggttatatgggggccctttatcgtctataccatcatttgcagcttttctcttgtacatttttactgtanagtctcctanatatctatgtgccgaaggtagaataactgatgcacatgatattttgaggaaaatagctgatgttaatcagacagaacttccccctgggatgcttgtttctgatcaagtgatagagctggatgaggaacagaaattgcttaagccgagagccaacaaaatcttcaattttaagacaggattgtcttcatccctgatgcttttatccccacaattactacgaattaccctcctcatgtgggtggtttattttggaaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="103304" stop="102202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103004" g_stop="102502" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E253844" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103004" e_stop="102502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGA-AAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTAT-T---GG--CTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCA</genome_strand>
        <mrna_strand>TGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAGGGAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATATGGGGGCCCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTANAGTCTCCTANATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGATGTTAATCAGACAGAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAAGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315780" ref_strand="+" ref_description="SGN-E315780 [cTOA-26-J17]">
      <seq>tttctccttctctgatttgaacagaaagagacgtgaggaagagaagattaatgtgataaaggagatggcaccgcaacagcagcaggtggaggaggaagatgaacatgtgtacacactggacgaagctcttacagctctgggttttggcaaattccagtatttggtgttgtgttatgcgggtcttggatcaatggtggatgctgttgaagttatgattctttcttttattggaccagctgttaagtctcaatgggggctttcttctacacaagaaactcttattactactgttgtgtttgctggcatgcttattggagcttacttttggggaattcttgctgacaactatggaagacggcaagcctatttaaccttttttaatatttattgaaaaagtttatgtttgtgtttttctttttagattgggtgaattgtgaatgatcatatttgagtctgtagattgcttaattgttgtttggtttaagttgtcatggatgattatacactttcattttccatcaccaggaaaagtcttctgattgtggcaatagtgacaaccgtatctgcatttctgagttccttttctccaaactatatatcactgctcattcttcgtatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="106932" stop="105573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106632" g_stop="106569" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106568" i_stop="106431" i_length="138">
            <donor d_prob="0.027" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106430" g_stop="105873" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="622" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E315780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106632" e_stop="106569"/>
          <exon e_start="106430" e_stop="105873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTTCTCTGATTTGAACAGAAAGAGACGTGAGGAAGAGAAGATTAATGTGATAAAGGAGGTGAGAAAAAGTATAATTGTGTTTATTTCAGCTCACATGGAGGCAAGATCCTAAATTTATGAAGAAAACCCATATTTTACCTGTTAATTTGCTTCAAATCATCGATCTATTCATTGACCCGAAATTGACGGGCTGGAGATGGCACCGCAACAGCAGCAGGTGGAGGAGGAAGATGAACATGTGTACACACTGGACGAAGCTCTTACAGCTCTGGGTTTTGGCAAATTCCAGTATTTGGTGTTGTGTTATGCGGGTCTTGGATCAATGGTGGATGCTGTTGAAGTTATGATTCTTTCTTTTATTGGACCAGCTGTTAAGTCTCAATGGGGGCTTTCTTCTACACAAGAAACTCTTATTACTACTGTTGTGTTTGCTGGCATGCTTATTGGAGCTTACTTTTGGGGAATTCTTGCTGACAACTATGGAAGACGGCAAGCCTATTTAACCTTTTTTAATATTTATTGAAAAAGTTTATGTTTGTGTTTTTCTTTTTAGATTGGGTGAATTGTGAATGATCATATTTGAGTCTGTAGATTGCTTAATTGTTGTTTGGTTTAAGTTGTCATGGATGATTATACACTTTCATTTTCCATCACCAGGAAAAGTCTTCTGATTGTGGCAATAGTGACAACCGTATCTGCATTTCTGAGTTCCTTTTCTCCAAACTATATATCACTGCTCATTCTTCGTATGCTG</genome_strand>
        <mrna_strand>TTTCTCCTTCTCTGATTTGAACAGAAAGAGACGTGAGGAAGAGAAGATTAATGTGATAAAGGAG..........................................................................................................................................ATGGCACCGCAACAGCAGCAGGTGGAGGAGGAAGATGAACATGTGTACACACTGGACGAAGCTCTTACAGCTCTGGGTTTTGGCAAATTCCAGTATTTGGTGTTGTGTTATGCGGGTCTTGGATCAATGGTGGATGCTGTTGAAGTTATGATTCTTTCTTTTATTGGACCAGCTGTTAAGTCTCAATGGGGGCTTTCTTCTACACAAGAAACTCTTATTACTACTGTTGTGTTTGCTGGCATGCTTATTGGAGCTTACTTTTGGGGAATTCTTGCTGACAACTATGGAAGACGGCAAGCCTATTTAACCTTTTTTAATATTTATTGAAAAAGTTTATGTTTGTGTTTTTCTTTTTAGATTGGGTGAATTGTGAATGATCATATTTGAGTCTGTAGATTGCTTAATTGTTGTTTGGTTTAAGTTGTCATGGATGATTATACACTTTCATTTTCCATCACCAGGAAAAGTCTTCTGATTGTGGCAATAGTGACAACCGTATCTGCATTTCTGAGTTCCTTTTCTCCAAACTATATATCACTGCTCATTCTTCGTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237374" ref_strand="+" ref_description="SGN-E237374 [cLEL-7-F14](-)">
      <seq>tccagaacatgactgctgtcaggcagcttttgcagttgtcaacaaaggtgtccgtccaaccatccccactgattgtttacctgtcctagctgaaatcatgacttgctgctgggatggtaaccctgacaatagacctccgttctctcaggtggtcagaatgcttgaggctgcagaaacagagatcttgacgaaggtcagaaaagcccgtttcagatgctgcattagtcaacccatgactacagattgatatggaaagagaaactgtaggtgcagtaaagggcaagagtaaaggatttggaaaggctaagctgaagtgattccaaagtctggcatgtgtatctatgaggcataatttctttgctcagatagaaaaaaggggagaaagttatgacaaggaactgtttgattttgtgttgtatcttcttttgatttccttttcttcttgaatttaagattctgattagtgataatagaagagtatgtgtatgtatacatgtccatttatggctgtgttttattttactttaatcaaattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="118934" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118634" g_stop="118079" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E237374" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118634" e_stop="118079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAACATGACTGCTGTGCAGGCAGCTTTTGCAGTTGTCAACAAAGGTGTCCGTCCAACCATCCCCACTGATTGTTTACCTGTCCTAGCTGAAATCATGACTTGCTGCTGGGATGGTAACCCTGACAATAGACCTCCGTTCTCTCAGGTGGTCAGAATGCTTGAGGCTGCAGAAACAGAGATCTTGACGAAGGTCAGAAAAGCCCGTTTCAGATGCTGCATTAGTCAACCCATGACTACAGATTGATATGGAAAGAGAAACTGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGAACTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTACCAGGTGTCCACATGCA</genome_strand>
        <mrna_strand>TCCAGAACATGACTGCTGT-CAGGCAGCTTTTGCAGTTGTCAACAAAGGTGTCCGTCCAACCATCCCCACTGATTGTTTACCTGTCCTAGCTGAAATCATGACTTGCTGCTGGGATGGTAACCCTGACAATAGACCTCCGTTCTCTCAGGTGGTCAGAATGCTTGAGGCTGCAGAAACAGAGATCTTGACGAAGGTCAGAAAAGCCCGTTTCAGATGCTGCATTAGTCAACCCATGACTACAGATTGATATGGAAAGAGAAACTGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGAACTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236927" ref_strand="+" ref_description="SGN-E236927 [cLEL-7-F14](-)">
      <seq>ctcaggtggtcagaatgcttgaggctgcagaaacagagatcttcacgaaggtcagaaaagcccgtttcagatgctgcattagtcaacccatgactacagattgatatggaaagagaaactgtaggtgcagtaaagggcaagagtaaaggatttggaaaggctaagctgaagtgattccaaagtctggcatgtgtatctatgaggcataatttctttgctcagatagaaaaaaggggagaaagttatgacaaggacctgtttgattttgtgttgtatcttcttttgatttccttttcttcttgaatttaagattctgattagtgataatagaagagtatgtgtatgtatacatgtccatttatggctgtgttttattttactttaatcaaattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="118790" stop="36166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118490" g_stop="118079" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E236927" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118490" e_stop="118079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTGGTCAGAATGCTTGAGGCTGCAGAAACAGAGATCTTGACGAAGGTCAGAAAAGCCCGTTTCAGATGCTGCATTAGTCAACCCATGACTACAGATTGATATGGAAAGAGAAACTGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGAACTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTACCAGGTGTCCACATGCA</genome_strand>
        <mrna_strand>CTCAGGTGGTCAGAATGCTTGAGGCTGCAGAAACAGAGATCTTCACGAAGGTCAGAAAAGCCCGTTTCAGATGCTGCATTAGTCAACCCATGACTACAGATTGATATGGAAAGAGAAACTGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGACCTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239136" ref_strand="+" ref_description="SGN-E239136 [cLEL-9-E16](-)">
      <seq>tgtaggtgcagtaaagggcaagagtaaagggtttggaaaggctaagctgaagtgattccaaagtctggcatgtgtatttatcaggcataatttctttgctcacatagaaaatagggcagaaagttatgacaaggcactgtttgattatgtggggtatcttcatttgatttccacttcgtcttgaatttaagattctgattagtgataatagaagagtatgtgtatgtatacatgtccatttatggctgtgttttattttactttaatctaatgtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0032K07-9ZSa9/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0032K07.2" temp_strand="-" temp_description="C12HBa0032K07.2  AC209586.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0032K07 upload_account_name:italy">
        <position start="118671" stop="117796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118371" g_stop="118092" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="281" polyA_stop="293"/>
      <MATCH_line gen_id="C12HBa0032K07.2" gen_strand="-" ref_id="SGN-E239136" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0032K07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118371" e_stop="118092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGAACTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTACCAG</genome_strand>
        <mrna_strand>TGTAGGTGCAGTAAAGGGCAAGAGTAAAGGGTTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATTTATCAGGCATAATTTCTTTGCTCACATAGAAAATAGGGCAGAAAGTTATGACAAGGCACTGTTTGATTATGTGGGGTATCTTCATTTGATTTCCACTTCGTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCTAATGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>38</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3628" PGL_stop="4177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3628" e_stop="4177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="3628" e_stop="4177" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3628" stop="4177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3654" stop="4177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACATTTTCTCTCATATTTATCTTTTTTAATTGTTAATTCTCTCTTTCATTTAATTTTTTTACTCTCATGATTATCTTTTCTGATTTTCCTTCAACATTCAAGTTGCAAAAATTTTTTTTGTCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACGAGAATCCCTTTGATTAAGGTATCTCTAATCTCTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGACTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCACTGCTAAAATGAGGGAACAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACTTTTCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGGATA</gDNA_template>
            <first_frame> K  N  I  F  S  H  I  Y  L  F  *  L  L  I  L  S  F  I  *  F  F  Y  S  H  D  Y  L  F  *  F  S  F  N  I  Q  V  A  K  I  F  F  V  I  Y  F  G  C  F  F  N  P  K  L  N  Q  R  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  N  V  V  C  I  F  Q  F  L  L  *  F  T  L  Q  *  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  N  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  L  F  S  N  S  E  R  K  C  R  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  D  </first_frame>
            <second_frame>  K  T  F  S  L  I  F  I  F  F  N  C  *  F  S  L  S  F  N  F  F  T  L  M  I  I  F  S  D  F  P  S  T  F  K  L  Q  K  F  F  L  S  Y  I  L  V  V  F  L  I  Q  N  *  I  N  E  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  M  L  F  V  F  F  N  F  C  Y  D  L  L  S  N  D  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  H  C  *  N  E  G  T  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  F  S  Q  I  Q  N  A  N  V  E  S  L  S  T  R  E  D  L  E  K  D  D  E  D  R  I </second_frame>
            <third_frame>   K  H  F  L  S  Y  L  S  F  L  I  V  N  S  L  F  H  L  I  F  L  L  S  *  L  S  F  L  I  F  L  Q  H  S  S  C  K  N  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  S  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  C  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  T  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  S  T  A  K  M  R  E  Q  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  K  T  T  K  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0032K07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13903" PGL_stop="13252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13903" e_stop="13463"/>
            <exon e_start="13375" e_stop="13252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.966" e_score="0.995"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13903" e_stop="13463" e_length="441"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.966">
            <gDNA_intron_boundary i_start="13462" i_stop="13376" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="13375" e_stop="13252" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13903" stop="13463"/>
              <exon start="13375" stop="13252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAATGGAGAAGGGTAGAGGGGTGAACCTATAAATCTGCTGAGTTTCAAACCTTGTGCCATTGGCTCCAGGGTTTTCCCCATTATAAATAAATAAGTATCGAGTCTTGTACTTCTATTTTGATACAGGTAAGAATAATATCAAGTCTCGTGCTAAGTTCTAGAATAGATATTGACTTTATCTGGTAGAGGACTGGACATTCCAGCATTGTTCTTTTTTCTCTACTTTCTTGGATGTATTTTGAGCATCTTATTGCCTATTACATGACCTTTCTTTCGATCAATAACATTTCTGGTCTTTTCTTTTCTCAGCCAATTCAAACTATGAGCTGGGAAGAGGTGACAAATTAGGTGGTTGGAAACCACAACCAGTTCCAAGCCTTAAAGGTGTTCGTGTTATTCAGATAGCTAGTGGGGGATATCATTCTCTAGCTTTGACTG : ATAAAGGAGAAGTGCTTTCATGGGGTCATGGAGGCCATGGTCAACTGGGTAATTCTTCTCTTCAAAACCAGAAAGTTCCCATCCAAGTTGAGGCTTTGGCCCACGAGAAAGTCATCTATATATC</gDNA_template>
            <first_frame> F  K  W  R  R  V  E  G  *  T  Y  K  S  A  E  F  Q  T  L  C  H  W  L  Q  G  F  P  H  Y  K  *  I  S  I  E  S  C  T  S  I  L  I  Q  V  R  I  I  S  S  L  V  L  S  S  R  I  D  I  D  F  I  W  *  R  T  G  H  S  S  I  V  L  F  S  L  L  S  W  M  Y  F  E  H  L  I  A  Y  Y  M  T  F  L  S  I  N  N  I  S  G  L  F  F  S  Q  P  I  Q  T  M  S  W  E  E  V  T  N  *  V  V  G  N  H  N  Q  F  Q  A  L  K  V  F  V  L  F  R  *  L  V  G  D  I  I  L  *  L  *  L  :  I  K  E  K  C  F  H  G  V  M  E  A  M  V  N  W  V  I  L  L  F  K  T  R  K  F  P  S  K  L  R  L  W  P  T  R  K  S  S  I  Y  </first_frame>
            <second_frame>  L  N  G  E  G  *  R  G  E  P  I  N  L  L  S  F  K  P  C  A  I  G  S  R  V  F  P  I  I  N  K  *  V  S  S  L  V  L  L  F  *  Y  R  *  E  *  Y  Q  V  S  C  *  V  L  E  *  I  L  T  L  S  G  R  G  L  D  I  P  A  L  F  F  F  L  Y  F  L  G  C  I  L  S  I  L  L  P  I  T  *  P  F  F  R  S  I  T  F  L  V  F  S  F  L  S  Q  F  K  L  *  A  G  K  R  *  Q  I  R  W  L  E  T  T  T  S  S  K  P  *  R  C  S  C  Y  S  D  S  *  W  G  I  S  F  S  S  F  D  * :   *  R  R  S  A  F  M  G  S  W  R  P  W  S  T  G  *  F  F  S  S  K  P  E  S  S  H  P  S  *  G  F  G  P  R  E  S  H  L  Y  I </second_frame>
            <third_frame>   *  M  E  K  G  R  G  V  N  L  *  I  C  *  V  S  N  L  V  P  L  A  P  G  F  S  P  L  *  I  N  K  Y  R  V  L  Y  F  Y  F  D  T  G  K  N  N  I  K  S  R  A  K  F  *  N  R  Y  *  L  Y  L  V  E  D  W  T  F  Q  H  C  S  F  F  S  T  F  L  D  V  F  *  A  S  Y  C  L  L  H  D  L  S  F  D  Q  *  H  F  W  S  F  L  F  S  A  N  S  N  Y  E  L  G  R  G  D  K  L  G  G  W  K  P  Q  P  V  P  S  L  K  G  V  R  V  I  Q  I  A  S  G  G  Y  H  S  L  A  L  T   : D  K  G  E  V  L  S  W  G  H  G  G  H  G  Q  L  G  N  S  S  L  Q  N  Q  K  V  P  I  Q  V  E  A  L  A  H  E  K  V  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13616" stop="13463"/>
                    <exon start="13375" stop="13254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFWSFLFSANSNYELGRGDKLGGWKPQPVPSLKGVRVIQIASGGYHSLALTDKGEVLSWGHGGHGQLGNSSLQNQKVPIQVEALAHEKVIYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="35186" PGL_stop="32363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35186" e_stop="34637"/>
            <exon e_start="32810" e_stop="32671"/>
            <exon e_start="32381" e_stop="32363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.684"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35186" e_stop="34637" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.954">
            <gDNA_intron_boundary i_start="34636" i_stop="32811" i_length="1826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32810" e_stop="32671" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32670" i_stop="32382" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.684">
            <gDNA_exon_boundary e_start="32381" e_stop="32363" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35186" stop="34637"/>
              <exon start="32810" stop="32671"/>
              <exon start="32381" stop="32363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACGTTGATGGCATTCTATTACCGAACTCGTCGTGCTCTTCCAATTTTCCGGTGGCGGCGTCACCTTTCTTCGTCTTCTTCTTCCAAAGTTGCTCTTCTTTGGGAATCTAAGTCCACCGACTCACAAAAAGCAGTCACTGTCCAACTGTATTCCTGGGGACGTGGTGCTTCCGGTCAATTGGGTGGCGGTATTGAAGAAATTAGAATATACCCATCTCCTGTTGCTTCATTTTCTTTGTCTCCCACTTTCCGGTTATCCTCCCCCATTCCTGGTCGTCTTCCTTCTGCTCCTGTGCTGCTGTCGTCTTCATTCAATGAGGGGAAGGTGGACGTTGAAATAGGAATTTCTTGTGGGCTTTTCCATTCAGCTTTATTGGTTGATGGGAATCTGTGGATTTGGGGAAAAGGTGATGGGGGTCGTCTTGGGTTTGGCCATGAGAACCCAGTTTTTGTTCCTACGTTGAATACTCATTTGGACTCGGTTCGAAGTGTTGCTCTTGGTGGGCTTCATTCCGTAGCTCTGAACTCTCTTGGGCAGGTCTTCACTTG : GGGTTACGGTGGCTTTGGCGCTCTTGGTCATAAAGTTTATCACAGAGAGCTGGTCCCTAGATTAGTGGAGGGTTCTTGGGATGCAGAAATATGCCATGTAGCAACCAGTGGGACACATACAGCTGCTATAACAAAATCAG : ATGAAGCTTTGTACTAGAC</gDNA_template>
            <first_frame> R  R  *  W  H  S  I  T  E  L  V  V  L  F  Q  F  S  G  G  G  V  T  F  L  R  L  L  L  P  K  L  L  F  F  G  N  L  S  P  P  T  H  K  K  Q  S  L  S  N  C  I  P  G  D  V  V  L  P  V  N  W  V  A  V  L  K  K  L  E  Y  T  H  L  L  L  L  H  F  L  C  L  P  L  S  G  Y  P  P  P  F  L  V  V  F  L  L  L  L  C  C  C  R  L  H  S  M  R  G  R  W  T  L  K  *  E  F  L  V  G  F  S  I  Q  L  Y  W  L  M  G  I  C  G  F  G  E  K  V  M  G  V  V  L  G  L  A  M  R  T  Q  F  L  F  L  R  *  I  L  I  W  T  R  F  E  V  L  L  L  V  G  F  I  P  *  L  *  T  L  L  G  R  S  S  L   : G  V  T  V  A  L  A  L  L  V  I  K  F  I  T  E  S  W  S  L  D  *  W  R  V  L  G  M  Q  K  Y  A  M  *  Q  P  V  G  H  I  Q  L  L  *  Q  N  Q  :  M  K  L  C  T  R  </first_frame>
            <second_frame>  D  V  D  G  I  L  L  P  N  S  S  C  S  S  N  F  P  V  A  A  S  P  F  F  V  F  F  F  Q  S  C  S  S  L  G  I  *  V  H  R  L  T  K  S  S  H  C  P  T  V  F  L  G  T  W  C  F  R  S  I  G  W  R  Y  *  R  N  *  N  I  P  I  S  C  C  F  I  F  F  V  S  H  F  P  V  I  L  P  H  S  W  S  S  S  F  C  S  C  A  A  V  V  F  I  Q  *  G  E  G  G  R  *  N  R  N  F  L  W  A  F  P  F  S  F  I  G  *  W  E  S  V  D  L  G  K  R  *  W  G  S  S  W  V  W  P  *  E  P  S  F  C  S  Y  V  E  Y  S  F  G  L  G  S  K  C  C  S  W  W  A  S  F  R  S  S  E  L  S  W  A  G  L  H  L  :  G  L  R  W  L  W  R  S  W  S  *  S  L  S  Q  R  A  G  P  *  I  S  G  G  F  L  G  C  R  N  M  P  C  S  N  Q  W  D  T  Y  S  C  Y  N  K  I  R :   *  S  F  V  L  D </second_frame>
            <third_frame>   T  L  M  A  F  Y  Y  R  T  R  R  A  L  P  I  F  R  W  R  R  H  L  S  S  S  S  S  S  K  V  A  L  L  W  E  S  K  S  T  D  S  Q  K  A  V  T  V  Q  L  Y  S  W  G  R  G  A  S  G  Q  L  G  G  G  I  E  E  I  R  I  Y  P  S  P  V  A  S  F  S  L  S  P  T  F  R  L  S  S  P  I  P  G  R  L  P  S  A  P  V  L  L  S  S  S  F  N  E  G  K  V  D  V  E  I  G  I  S  C  G  L  F  H  S  A  L  L  V  D  G  N  L  W  I  W  G  K  G  D  G  G  R  L  G  F  G  H  E  N  P  V  F  V  P  T  L  N  T  H  L  D  S  V  R  S  V  A  L  G  G  L  H  S  V  A  L  N  S  L  G  Q  V  F  T  W :   G  Y  G  G  F  G  A  L  G  H  K  V  Y  H  R  E  L  V  P  R  L  V  E  G  S  W  D  A  E  I  C  H  V  A  T  S  G  T  H  T  A  A  I  T  K  S   : D  E  A  L  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35184" stop="34637"/>
                    <exon start="32810" stop="32671"/>
                    <exon start="32381" stop="32365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLMAFYYRTRRALPIFRWRRHLSSSSSSKVALLWESKSTDSQKAVTVQLYSWGRGASGQLGGGIEEIRIYPSPVASFSLSPTFRLSSPIPGRLPSAPVLLSSSFNEGKVDVEIGISCGLFHSALLVDGNLWIWGKGDGGRLGFGHENPVFVPTLNTHLDSVRSVALGGLHSVALNSLGQVFTWGYGGFGALGHKVYHRELVPRLVEGSWDAEICHVATSGTHTAAITKSDEALY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37302" PGL_stop="45442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37302" e_stop="37517"/>
            <exon e_start="38598" e_stop="39173"/>
            <exon e_start="44923" e_stop="45442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37302" e_stop="37517" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37518" i_stop="38597" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38598" e_stop="39173" e_length="576"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39174" i_stop="44922" i_length="5749"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44923" e_stop="45442" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37302" stop="37517"/>
              <exon start="38598" stop="38990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37374" stop="37517"/>
              <exon start="38598" stop="39003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38670" stop="39173"/>
              <exon start="44923" stop="45003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38675" stop="39075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38676" stop="39136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38716" stop="39173"/>
              <exon start="44923" stop="45018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44952" stop="45442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTCTCAGAATAGTCTGGATAAACCCAATCAAATTGTTAAGCCCTCTTTCACTTTCTATAATTTCCACAAGAAAATCGGCCGTCGTTCTCTTGGAGTCGCCAGAAGTTTTACTCGGATGCAGCATCACTTCAACAATCCTTTGGACTAGCTGAATTTCATGACCGATTCCCTGTATCTGGAATTTTCAAGCTCTTAGAGAGTGACCTTATTAAT : GGAGACGATTGATCAACCACTAATACCTGGACTACCAGATGATTTGGCATTGAGATGTCTAGCAATGATATCACACGGATATCATGGCATTCTTGAAACAGTAAGTAGGCGATGGAGGAAGCTATTCCATAGTGCAGAATATTCCAATTATAAAGCTAGAGAAGGTTGGTCTGGTAACTGGTTATTTGTTCTGACTGGAGGATCTGAGAATCAATGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCACCCTCTGCCTAGGATACCCACGAGCCACCCTGACCAAGAGCACCTTGGTTTCTCATGTGCCTGTGTCTTGAATAAATTTCTTCTGATTGGCGGCACATATGGAGCACGTGATCAAGTAATTCCCCATCAAACAGCCCTGACGACAAATGAAGTTTTCCAATTTGATCCTTTCAGAAAAGAGTGGAGAAATGTTGCAAGTATGAGAACAGCACGTTCTAACTTTGCCTGCAGTGTTGTCTCTGGTAAGGTTTATGTAGCTGGAGGGCGCAACACATCATCGGGAGGAGGACTTGTTCTTGCTGAAGTTTATAATCCACTGACAGACAA : GTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATTGGGGTGGGAGCGCCATTGAAACTAGGGATGTTGATAACACGGAGTGGCATCGTAGAGGACTGGTACCTCCTGTGGTTCTACCTGACCATCCCCGGCCTCTAGAGGTCTTTGATTATGGATTTGTTGCACTGAGAAATGAAATTTATGTTTTGGGAGGAAGAGTGCTGCGATGGGAGGAATCTGGGACCGGGAAGTTTAACATTGTGAAGTTGAGCACAGTTAGAGTGTGCAACCCACTGAGTTTACCTTTAAGGTGGAGGGAGATTAGACCAATGTGTGAGCCT</gDNA_template>
            <first_frame> M  F  S  E  *  S  G  *  T  Q  S  N  C  *  A  L  F  H  F  L  *  F  P  Q  E  N  R  P  S  F  S  W  S  R  Q  K  F  Y  S  D  A  A  S  L  Q  Q  S  F  G  L  A  E  F  H  D  R  F  P  V  S  G  I  F  K  L  L  E  S  D  L  I  N  :  G  D  D  *  S  T  T  N  T  W  T  T  R  *  F  G  I  E  M  S  S  N  D  I  T  R  I  S  W  H  S  *  N  S  K  *  A  M  E  E  A  I  P  *  C  R  I  F  Q  L  *  S  *  R  R  L  V  W  *  L  V  I  C  S  D  W  R  I  *  E  S  M  G  C  L  *  S  *  S  *  *  V  A  P  S  A  *  D  T  H  E  P  P  *  P  R  A  P  W  F  L  M  C  L  C  L  E  *  I  S  S  D  W  R  H  I  W  S  T  *  S  S  N  S  P  S  N  S  P  D  D  K  *  S  F  P  I  *  S  F  Q  K  R  V  E  K  C  C  K  Y  E  N  S  T  F  *  L  C  L  Q  C  C  L  W  *  G  L  C  S  W  R  A  Q  H  I  I  G  R  R  T  C  S  C  *  S  L  *  S  T  D  R  Q  :  V  G  R  P  T  T  S  A  K  S  P  N  G  L  H  R  P  T  I  Q  W  *  I  L  C  F  N  G  P  C  W  A  V  R  A  G  D  I  C  C  F  *  S  I  R  *  N  M  A  K  C  K  *  Y  L  A  V  F  K  G  H  A  F  G  N  S  G  T  *  W  W  S  Y  M  H  S  C  R  L  G  W  E  R  H  *  N  *  G  C  *  *  H  G  V  A  S  *  R  T  G  T  S  C  G  S  T  *  P  S  P  A  S  R  G  L  *  L  W  I  C  C  T  E  K  *  N  L  C  F  G  R  K  S  A  A  M  G  G  I  W  D  R  E  V  *  H  C  E  V  E  H  S  *  S  V  Q  P  T  E  F  T  F  K  V  E  G  D  *  T  N  V  *  A  </first_frame>
            <second_frame>  C  S  Q  N  S  L  D  K  P  N  Q  I  V  K  P  S  F  T  F  Y  N  F  H  K  K  I  G  R  R  S  L  G  V  A  R  S  F  T  R  M  Q  H  H  F  N  N  P  L  D  *  L  N  F  M  T  D  S  L  Y  L  E  F  S  S  S  *  R  V  T  L  L  M :   E  T  I  D  Q  P  L  I  P  G  L  P  D  D  L  A  L  R  C  L  A  M  I  S  H  G  Y  H  G  I  L  E  T  V  S  R  R  W  R  K  L  F  H  S  A  E  Y  S  N  Y  K  A  R  E  G  W  S  G  N  W  L  F  V  L  T  G  G  S  E  N  Q  W  V  A  Y  D  P  E  A  D  R  W  H  P  L  P  R  I  P  T  S  H  P  D  Q  E  H  L  G  F  S  C  A  C  V  L  N  K  F  L  L  I  G  G  T  Y  G  A  R  D  Q  V  I  P  H  Q  T  A  L  T  T  N  E  V  F  Q  F  D  P  F  R  K  E  W  R  N  V  A  S  M  R  T  A  R  S  N  F  A  C  S  V  V  S  G  K  V  Y  V  A  G  G  R  N  T  S  S  G  G  G  L  V  L  A  E  V  Y  N  P  L  T  D  K :   W  E  D  L  P  P  L  P  S  P  Q  M  D  C  I  G  L  P  Y  N  G  K  F  Y  V  L  T  D  L  V  G  L  L  E  Q  E  T  S  V  V  F  D  P  S  D  E  T  W  L  S  V  N  D  T  W  P  F  S  R  A  M  H  L  G  I  Q  V  L  D  G  G  H  I  C  T  V  V  D  W  G  G  S  A  I  E  T  R  D  V  D  N  T  E  W  H  R  R  G  L  V  P  P  V  V  L  P  D  H  P  R  P  L  E  V  F  D  Y  G  F  V  A  L  R  N  E  I  Y  V  L  G  G  R  V  L  R  W  E  E  S  G  T  G  K  F  N  I  V  K  L  S  T  V  R  V  C  N  P  L  S  L  P  L  R  W  R  E  I  R  P  M  C  E  P </second_frame>
            <third_frame>   V  L  R  I  V  W  I  N  P  I  K  L  L  S  P  L  S  L  S  I  I  S  T  R  K  S  A  V  V  L  L  E  S  P  E  V  L  L  G  C  S  I  T  S  T  I  L  W  T  S  *  I  S  *  P  I  P  C  I  W  N  F  Q  A  L  R  E  *  P  Y  *   : W  R  R  L  I  N  H  *  Y  L  D  Y  Q  M  I  W  H  *  D  V  *  Q  *  Y  H  T  D  I  M  A  F  L  K  Q  *  V  G  D  G  G  S  Y  S  I  V  Q  N  I  P  I  I  K  L  E  K  V  G  L  V  T  G  Y  L  F  *  L  E  D  L  R  I  N  G  L  L  M  I  L  K  L  I  G  G  T  L  C  L  G  Y  P  R  A  T  L  T  K  S  T  L  V  S  H  V  P  V  S  *  I  N  F  F  *  L  A  A  H  M  E  H  V  I  K  *  F  P  I  K  Q  P  *  R  Q  M  K  F  S  N  L  I  L  S  E  K  S  G  E  M  L  Q  V  *  E  Q  H  V  L  T  L  P  A  V  L  S  L  V  R  F  M  *  L  E  G  A  T  H  H  R  E  E  D  L  F  L  L  K  F  I  I  H  *  Q  T   : S  G  K  T  Y  H  L  C  Q  V  P  K  W  I  A  *  A  Y  H  T  M  V  N  F  M  F  *  R  T  L  L  G  C  *  S  R  R  H  L  L  F  L  I  H  P  M  K  H  G  *  V  *  M  I  L  G  R  F  Q  G  P  C  I  W  E  F  R  Y  L  M  V  V  I  Y  A  Q  L  *  I  G  V  G  A  P  L  K  L  G  M  L  I  T  R  S  G  I  V  E  D  W  Y  L  L  W  F  Y  L  T  I  P  G  L  *  R  S  L  I  M  D  L  L  H  *  E  M  K  F  M  F  W  E  E  E  C  C  D  G  R  N  L  G  P  G  S  L  T  L  *  S  *  A  Q  L  E  C  A  T  H  *  V  Y  L  *  G  G  G  R  L  D  Q  C  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37501" stop="37517"/>
                    <exon start="38598" stop="39173"/>
                    <exon start="44923" stop="45442"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVTLLMETIDQPLIPGLPDDLALRCLAMISHGYHGILETVSRRWRKLFHSAEYSNYKAREGWSGNWLFVLTGGSENQWVAYDPEADRWHPLPRIPTSHPDQEHLGFSCACVLNKFLLIGGTYGARDQVIPHQTALTTNEVFQFDPFRKEWRNVASMRTARSNFACSVVSGKVYVAGGRNTSSGGGLVLAEVYNPLTDKWEDLPPLPSPQMDCIGLPYNGKFYVLTDLVGLLEQETSVVFDPSDETWLSVNDTWPFSRAMHLGIQVLDGGHICTVVDWGGSAIETRDVDNTEWHRRGLVPPVVLPDHPRPLEVFDYGFVALRNEIYVLGGRVLRWEESGTGKFNIVKLSTVRVCNPLSLPLRWREIRPMCEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44446" e_stop="45442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="44446" e_stop="45442" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44446" stop="45186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44447" stop="45085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44952" stop="45442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTAGTCATGTAAATTGAAATGTGCATACTATTTTTGAGAGAAAACAGTACTTCCATTAATCTTTGAAGCAGCAAAAAACTTTATAAGAAAAGCTTTTAAGAGGCATATGCGACATATACTATATTTATGAAATGAAAAACACTTCCCAATTTAAAAGTAAAATAAGAAGAAAAGGTTAATGCAAGTATAAGGGTGATGAAAACATGGACTCAAAATGTGTATCAGTGGAACGTATATCTAGTGGAAATAAATTTTGATGCTTTGACTACATTTGCCGTTGGGTCGTAGTTCTTTAGAAACCTATGTACCTTGTTATTTTATCTTGGAAACGATTCCTTGTTGCTTCTAACTTCTACTCTGTTTTTCTCTTTGAAGCAAAAGGATGGTCGGATATTTAATTTGACAGAATTTTAAGAGAAGAATGTTTATGTTTTATCCTATACTGTTTTTCTTAATATTTTAAAATGTTGCAGGTGGGAAGACCTACCACCTCTGCCAAGTCCCCAAATGGATTGCATAGGCCTACCATACAATGGTAAATTTTATGTTTTAACGGACCTTGTTGGGCTGTTAGAGCAGGAGACATCTGTTGTTTTTGATCCATCCGATGAAACATGGCTAAGTGTAAATGATACTTGGCCGTTTTCAAGGGCCATGCATTTGGGAATTCAGGTACTTGATGGTGGTCATATATGCACAGTTGTAGATTGGGGTGGGAGCGCCATTGAAACTAGGGATGTTGATAACACGGAGTGGCATCGTAGAGGACTGGTACCTCCTGTGGTTCTACCTGACCATCCCCGGCCTCTAGAGGTCTTTGATTATGGATTTGTTGCACTGAGAAATGAAATTTATGTTTTGGGAGGAAGAGTGCTGCGATGGGAGGAATCTGGGACCGGGAAGTTTAACATTGTGAAGTTGAGCACAGTTAGAGTGTGCAACCCACTGAGTTTACCTTTAAGGTGGAGGGAGATTAGACCAATGTGTGAGCCT</gDNA_template>
            <first_frame> K  S  S  H  V  N  *  N  V  H  T  I  F  E  R  K  Q  Y  F  H  *  S  L  K  Q  Q  K  T  L  *  E  K  L  L  R  G  I  C  D  I  Y  Y  I  Y  E  M  K  N  T  S  Q  F  K  S  K  I  R  R  K  G  *  C  K  Y  K  G  D  E  N  M  D  S  K  C  V  S  V  E  R  I  S  S  G  N  K  F  *  C  F  D  Y  I  C  R  W  V  V  V  L  *  K  P  M  Y  L  V  I  L  S  W  K  R  F  L  V  A  S  N  F  Y  S  V  F  L  F  E  A  K  G  W  S  D  I  *  F  D  R  I  L  R  E  E  C  L  C  F  I  L  Y  C  F  S  *  Y  F  K  M  L  Q  V  G  R  P  T  T  S  A  K  S  P  N  G  L  H  R  P  T  I  Q  W  *  I  L  C  F  N  G  P  C  W  A  V  R  A  G  D  I  C  C  F  *  S  I  R  *  N  M  A  K  C  K  *  Y  L  A  V  F  K  G  H  A  F  G  N  S  G  T  *  W  W  S  Y  M  H  S  C  R  L  G  W  E  R  H  *  N  *  G  C  *  *  H  G  V  A  S  *  R  T  G  T  S  C  G  S  T  *  P  S  P  A  S  R  G  L  *  L  W  I  C  C  T  E  K  *  N  L  C  F  G  R  K  S  A  A  M  G  G  I  W  D  R  E  V  *  H  C  E  V  E  H  S  *  S  V  Q  P  T  E  F  T  F  K  V  E  G  D  *  T  N  V  *  A  </first_frame>
            <second_frame>  K  V  V  M  *  I  E  M  C  I  L  F  L  R  E  N  S  T  S  I  N  L  *  S  S  K  K  L  Y  K  K  S  F  *  E  A  Y  A  T  Y  T  I  F  M  K  *  K  T  L  P  N  L  K  V  K  *  E  E  K  V  N  A  S  I  R  V  M  K  T  W  T  Q  N  V  Y  Q  W  N  V  Y  L  V  E  I  N  F  D  A  L  T  T  F  A  V  G  S  *  F  F  R  N  L  C  T  L  L  F  Y  L  G  N  D  S  L  L  L  L  T  S  T  L  F  F  S  L  K  Q  K  D  G  R  I  F  N  L  T  E  F  *  E  K  N  V  Y  V  L  S  Y  T  V  F  L  N  I  L  K  C  C  R  W  E  D  L  P  P  L  P  S  P  Q  M  D  C  I  G  L  P  Y  N  G  K  F  Y  V  L  T  D  L  V  G  L  L  E  Q  E  T  S  V  V  F  D  P  S  D  E  T  W  L  S  V  N  D  T  W  P  F  S  R  A  M  H  L  G  I  Q  V  L  D  G  G  H  I  C  T  V  V  D  W  G  G  S  A  I  E  T  R  D  V  D  N  T  E  W  H  R  R  G  L  V  P  P  V  V  L  P  D  H  P  R  P  L  E  V  F  D  Y  G  F  V  A  L  R  N  E  I  Y  V  L  G  G  R  V  L  R  W  E  E  S  G  T  G  K  F  N  I  V  K  L  S  T  V  R  V  C  N  P  L  S  L  P  L  R  W  R  E  I  R  P  M  C  E  P </second_frame>
            <third_frame>   K  *  S  C  K  L  K  C  A  Y  Y  F  *  E  K  T  V  L  P  L  I  F  E  A  A  K  N  F  I  R  K  A  F  K  R  H  M  R  H  I  L  Y  L  *  N  E  K  H  F  P  I  *  K  *  N  K  K  K  R  L  M  Q  V  *  G  *  *  K  H  G  L  K  M  C  I  S  G  T  Y  I  *  W  K  *  I  L  M  L  *  L  H  L  P  L  G  R  S  S  L  E  T  Y  V  P  C  Y  F  I  L  E  T  I  P  C  C  F  *  L  L  L  C  F  S  L  *  S  K  R  M  V  G  Y  L  I  *  Q  N  F  K  R  R  M  F  M  F  Y  P  I  L  F  F  L  I  F  *  N  V  A  G  G  K  T  Y  H  L  C  Q  V  P  K  W  I  A  *  A  Y  H  T  M  V  N  F  M  F  *  R  T  L  L  G  C  *  S  R  R  H  L  L  F  L  I  H  P  M  K  H  G  *  V  *  M  I  L  G  R  F  Q  G  P  C  I  W  E  F  R  Y  L  M  V  V  I  Y  A  Q  L  *  I  G  V  G  A  P  L  K  L  G  M  L  I  T  R  S  G  I  V  E  D  W  Y  L  L  W  F  Y  L  T  I  P  G  L  *  R  S  L  I  M  D  L  L  H  *  E  M  K  F  M  F  W  E  E  E  C  C  D  G  R  N  L  G  P  G  S  L  T  L  *  S  *  A  Q  L  E  C  A  T  H  *  V  Y  L  *  G  G  G  R  L  D  Q  C  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44864" stop="45442"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKNVYVLSYTVFLNILKCCRWEDLPPLPSPQMDCIGLPYNGKFYVLTDLVGLLEQETSVVFDPSDETWLSVNDTWPFSRAMHLGIQVLDGGHICTVVDWGGSAIETRDVDNTEWHRRGLVPPVVLPDHPRPLEVFDYGFVALRNEIYVLGGRVLRWEESGTGKFNIVKLSTVRVCNPLSLPLRWREIRPMCEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49688" PGL_stop="47679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49688" e_stop="49410"/>
            <exon e_start="48280" e_stop="47679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49688" e_stop="49410" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="49409" i_stop="48281" i_length="1129"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="48280" e_stop="47679" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49688" stop="49410"/>
              <exon start="48280" stop="48206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49669" stop="49410"/>
              <exon start="48280" stop="47845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49656" stop="49410"/>
              <exon start="48280" stop="47679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49656" stop="49410"/>
              <exon start="48280" stop="47705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATTGATTTCAGAGTATTCGACTTTGCAGTAGAATCATCCAAATTCTCGAATTAGGTATGGAGAGAGGAAGAGGACAGTGGGGATCAGTATTTCGTGGTATGATTCCTCTGCTAGGGCTGCATACGCTGAGTGAGTATTCCAGATTAGACAGAAAACCCCCTATTACTGCTGCACTTCTTGCCGCTAATACCATTATTTACTTGAGGCCCAAATTTATTCATCCTTTCCTTCCCACAATCGATCAAGTTTGGTTTAATCCTCACCTTATTCTCAAG : TACACAGACCTCAAGCGATTCTTCCTGTCGCCGTTCTTCCACGTAAATGAATCTCACCTGGTGTACAATATGCTTTCACTTTTGTGGAAGGGTATTCAACTGGAGACATCGATGGGTAGTGCAGAGTTTGCATCAATGGTTGCAACCTTAGTTGCTATGTCCCAAGGTGTTACACTGTTGCTTGCAAAATCACTTCTGCTGTTCTTTGATTACGAGAGACCCTACTATAATGAATACTCTGTGGGTTTTTCTGGTGTCCTCTTCGCCATGAAAGTTATCGTCAATTCACAATCAGATGAGTATACCTCTGTACATGGACTTATGGTTCCTACTCGTTATGCTGCCTGGGCAGAGCTTGTTCTCGTACAAATGTTTGTCCCTGGTGTCTCATTCCTTGGCCACCTTGGGGGAATACTAGCTGGCCTTCTGTATTTGCAATTAAAAGCGTCATATTCAGGTCTGAATCCAGTTAGACAATTCATGAGAGGTTTTAGCCATGCTCTGAGCTGGCCTTTAAGATTAGTGAAGAGCTTATTTCGACATCGACCTAGAATTACTGGGAGAGGAACTGCTGGTGCGAGGATTGCACGAGATACACTTCA</gDNA_template>
            <first_frame> K  D  *  F  Q  S  I  R  L  C  S  R  I  I  Q  I  L  E  L  G  M  E  R  G  R  G  Q  W  G  S  V  F  R  G  M  I  P  L  L  G  L  H  T  L  S  E  Y  S  R  L  D  R  K  P  P  I  T  A  A  L  L  A  A  N  T  I  I  Y  L  R  P  K  F  I  H  P  F  L  P  T  I  D  Q  V  W  F  N  P  H  L  I  L  K  :  Y  T  D  L  K  R  F  F  L  S  P  F  F  H  V  N  E  S  H  L  V  Y  N  M  L  S  L  L  W  K  G  I  Q  L  E  T  S  M  G  S  A  E  F  A  S  M  V  A  T  L  V  A  M  S  Q  G  V  T  L  L  L  A  K  S  L  L  L  F  F  D  Y  E  R  P  Y  Y  N  E  Y  S  V  G  F  S  G  V  L  F  A  M  K  V  I  V  N  S  Q  S  D  E  Y  T  S  V  H  G  L  M  V  P  T  R  Y  A  A  W  A  E  L  V  L  V  Q  M  F  V  P  G  V  S  F  L  G  H  L  G  G  I  L  A  G  L  L  Y  L  Q  L  K  A  S  Y  S  G  L  N  P  V  R  Q  F  M  R  G  F  S  H  A  L  S  W  P  L  R  L  V  K  S  L  F  R  H  R  P  R  I  T  G  R  G  T  A  G  A  R  I  A  R  D  T  L   </first_frame>
            <second_frame>  K  I  D  F  R  V  F  D  F  A  V  E  S  S  K  F  S  N  *  V  W  R  E  E  E  D  S  G  D  Q  Y  F  V  V  *  F  L  C  *  G  C  I  R  *  V  S  I  P  D  *  T  E  N  P  L  L  L  L  H  F  L  P  L  I  P  L  F  T  *  G  P  N  L  F  I  L  S  F  P  Q  S  I  K  F  G  L  I  L  T  L  F  S  S :   T  Q  T  S  S  D  S  S  C  R  R  S  S  T  *  M  N  L  T  W  C  T  I  C  F  H  F  C  G  R  V  F  N  W  R  H  R  W  V  V  Q  S  L  H  Q  W  L  Q  P  *  L  L  C  P  K  V  L  H  C  C  L  Q  N  H  F  C  C  S  L  I  T  R  D  P  T  I  M  N  T  L  W  V  F  L  V  S  S  S  P  *  K  L  S  S  I  H  N  Q  M  S  I  P  L  Y  M  D  L  W  F  L  L  V  M  L  P  G  Q  S  L  F  S  Y  K  C  L  S  L  V  S  H  S  L  A  T  L  G  E  Y  *  L  A  F  C  I  C  N  *  K  R  H  I  Q  V  *  I  Q  L  D  N  S  *  E  V  L  A  M  L  *  A  G  L  *  D  *  *  R  A  Y  F  D  I  D  L  E  L  L  G  E  E  L  L  V  R  G  L  H  E  I  H  F  </second_frame>
            <third_frame>   R  L  I  S  E  Y  S  T  L  Q  *  N  H  P  N  S  R  I  R  Y  G  E  R  K  R  T  V  G  I  S  I  S  W  Y  D  S  S  A  R  A  A  Y  A  E  *  V  F  Q  I  R  Q  K  T  P  Y  Y  C  C  T  S  C  R  *  Y  H  Y  L  L  E  A  Q  I  Y  S  S  F  P  S  H  N  R  S  S  L  V  *  S  S  P  Y  S  Q   : V  H  R  P  Q  A  I  L  P  V  A  V  L  P  R  K  *  I  S  P  G  V  Q  Y  A  F  T  F  V  E  G  Y  S  T  G  D  I  D  G  *  C  R  V  C  I  N  G  C  N  L  S  C  Y  V  P  R  C  Y  T  V  A  C  K  I  T  S  A  V  L  *  L  R  E  T  L  L  *  *  I  L  C  G  F  F  W  C  P  L  R  H  E  S  Y  R  Q  F  T  I  R  *  V  Y  L  C  T  W  T  Y  G  S  Y  S  L  C  C  L  G  R  A  C  S  R  T  N  V  C  P  W  C  L  I  P  W  P  P  W  G  N  T  S  W  P  S  V  F  A  I  K  S  V  I  F  R  S  E  S  S  *  T  I  H  E  R  F  *  P  C  S  E  L  A  F  K  I  S  E  E  L  I  S  T  S  T  *  N  Y  W  E  R  N  C  W  C  E  D  C  T  R  Y  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49679" stop="49410"/>
                    <exon start="48280" stop="47681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSIRLCSRIIQILELGMERGRGQWGSVFRGMIPLLGLHTLSEYSRLDRKPPITAALLAANTIIYLRPKFIHPFLPTIDQVWFNPHLILKYTDLKRFFLSPFFHVNESHLVYNMLSLLWKGIQLETSMGSAEFASMVATLVAMSQGVTLLLAKSLLLFFDYERPYYNEYSVGFSGVLFAMKVIVNSQSDEYTSVHGLMVPTRYAAWAELVLVQMFVPGVSFLGHLGGILAGLLYLQLKASYSGLNPVRQFMRGFSHALSWPLRLVKSLFRHRPRITGRGTAGARIARDTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54518" PGL_stop="53723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54518" e_stop="53723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="54518" e_stop="53723" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54518" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54517" stop="53971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTCTCATTTCCTCCGCCTAATTTTTCCCTTTTTATGTCTTTTAATTATATAATCATTCATGTCTTACTCACATTTCTTGTAATTCATCCATGACGACGTCATTCTCTGCAACAAAAGTTTTGCAACCTTTGCCCCTTTACTCTACTACATCTGCTGAAAACCCCCTTTTGGCTCAATCTCTAGAGGGTAGCTCTTCTTTTCTTGGACAATCTTCTCATAATCTTTCCCTCAATAAGAATTTCTATCCTCATTAATCACAATGCCGATCCAATAATGATGTTGTCGCCGTTTCTGATGTTGTTAATGAAAAGAAATCGAAGTCCAAATCTTCTATCTCCAATCTAGTATATCTTGATTTTTCCCTGTTTGTTTGTTGATTTTGTCTATTCAAGCTCGATTTTTCATTTGGGTCATGCTCAATTTGTTACTTTAGGAGTAACTTTAATCTTCATGTTTTTTTTATAGTGATTTAGTGCTTGTTTGTTTAGATTATTCGTATGAAAATTCTGTTGTCTGCTAAAGATTCATCCTTTTTTGGATCGCTAAGTCTTTTGAGTGTTCTTCATTTTGATTTAGTGCTTATTTTTGAATGCCATATGACATTGTAGTTGTTTGCATTATTCGTCTTGTTTGTGATTTTGTTAAATAGTTGTGTTTGTTGGTCCATCCCAATTTTGATAATTTTGGCATTTGCAAGCTCAGTTTTTATTTTTGTCATGCAACTTTTGACCCAATATTTGTTATTGTGGTAATTTAGTGTTTAATATTCTTATAATTTATCTTATAGCATGTA</gDNA_template>
            <first_frame> A  F  S  F  P  P  P  N  F  S  L  F  M  S  F  N  Y  I  I  I  H  V  L  L  T  F  L  V  I  H  P  *  R  R  H  S  L  Q  Q  K  F  C  N  L  C  P  F  T  L  L  H  L  L  K  T  P  F  W  L  N  L  *  R  V  A  L  L  F  L  D  N  L  L  I  I  F  P  S  I  R  I  S  I  L  I  N  H  N  A  D  P  I  M  M  L  S  P  F  L  M  L  L  M  K  R  N  R  S  P  N  L  L  S  P  I  *  Y  I  L  I  F  P  C  L  F  V  D  F  V  Y  S  S  S  I  F  H  L  G  H  A  Q  F  V  T  L  G  V  T  L  I  F  M  F  F  L  *  *  F  S  A  C  L  F  R  L  F  V  *  K  F  C  C  L  L  K  I  H  P  F  L  D  R  *  V  F  *  V  F  F  I  L  I  *  C  L  F  L  N  A  I  *  H  C  S  C  L  H  Y  S  S  C  L  *  F  C  *  I  V  V  F  V  G  P  S  Q  F  *  *  F  W  H  L  Q  A  Q  F  L  F  L  S  C  N  F  *  P  N  I  C  Y  C  G  N  L  V  F  N  I  L  I  I  Y  L  I  A  C  </first_frame>
            <second_frame>  L  S  H  F  L  R  L  I  F  P  F  L  C  L  L  I  I  *  S  F  M  S  Y  S  H  F  L  *  F  I  H  D  D  V  I  L  C  N  K  S  F  A  T  F  A  P  L  L  Y  Y  I  C  *  K  P  P  F  G  S  I  S  R  G  *  L  F  F  S  W  T  I  F  S  *  S  F  P  Q  *  E  F  L  S  S  L  I  T  M  P  I  Q  *  *  C  C  R  R  F  *  C  C  *  *  K  E  I  E  V  Q  I  F  Y  L  Q  S  S  I  S  *  F  F  P  V  C  L  L  I  L  S  I  Q  A  R  F  F  I  W  V  M  L  N  L  L  L  *  E  *  L  *  S  S  C  F  F  Y  S  D  L  V  L  V  C  L  D  Y  S  Y  E  N  S  V  V  C  *  R  F  I  L  F  W  I  A  K  S  F  E  C  S  S  F  *  F  S  A  Y  F  *  M  P  Y  D  I  V  V  V  C  I  I  R  L  V  C  D  F  V  K  *  L  C  L  L  V  H  P  N  F  D  N  F  G  I  C  K  L  S  F  Y  F  C  H  A  T  F  D  P  I  F  V  I  V  V  I  *  C  L  I  F  L  *  F  I  L  *  H  V </second_frame>
            <third_frame>   F  L  I  S  S  A  *  F  F  P  F  Y  V  F  *  L  Y  N  H  S  C  L  T  H  I  S  C  N  S  S  M  T  T  S  F  S  A  T  K  V  L  Q  P  L  P  L  Y  S  T  T  S  A  E  N  P  L  L  A  Q  S  L  E  G  S  S  S  F  L  G  Q  S  S  H  N  L  S  L  N  K  N  F  Y  P  H  *  S  Q  C  R  S  N  N  D  V  V  A  V  S  D  V  V  N  E  K  K  S  K  S  K  S  S  I  S  N  L  V  Y  L  D  F  S  L  F  V  C  *  F  C  L  F  K  L  D  F  S  F  G  S  C  S  I  C  Y  F  R  S  N  F  N  L  H  V  F  F  I  V  I  *  C  L  F  V  *  I  I  R  M  K  I  L  L  S  A  K  D  S  S  F  F  G  S  L  S  L  L  S  V  L  H  F  D  L  V  L  I  F  E  C  H  M  T  L  *  L  F  A  L  F  V  L  F  V  I  L  L  N  S  C  V  C  W  S  I  P  I  L  I  I  L  A  F  A  S  S  V  F  I  F  V  M  Q  L  L  T  Q  Y  L  L  L  W  *  F  S  V  *  Y  S  Y  N  L  S  Y  S  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54471" stop="54262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNHSCLTHISCNSSMTTSFSATKVLQPLPLYSTTSAENPLLAQSLEGSSSFLGQSSHNLSLNKNFYPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="63807" PGL_stop="96309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85345" e_stop="86126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="85345" e_stop="86126" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85345" stop="85829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85466" stop="86126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85467" stop="86126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85467" stop="86032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85500" stop="86032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGGGGGAAAAGCAGGTTGATTGCAGTCAAGGAGGTGCCTCAGACTCAAGGATTTGCAAGCATTCTAGGGTCTAAAGTAGAGAAGTTGCCGACAACATACTTGGGAATGCCACTATGGAGCAAACATAAAGTTTTGGTATATGGGATGGAATTCTGGAAAAAGCAAAAAAAAAAAAAATTATCAAGATGGAAGGCTCAATATCTATCCACGGGGGGTAGAGTGATCTTGATCAACTCTGTTTTAGATTCACTGCCTACTTAGGTTATGTCGTTATTTCCAATTCCTCCAATAATTATCAAAGAGCTGGATAGACTGAGAAGAAACTTCCTCTAGAAAAAAGGTAAAGAGGGAGAAAGCAAGGGTTACTATTTAGTGAAATGGAAAAGTGTGATGCTAAGCAAAGAAAAAGGGGGACTGGGTATTAGAAATTTGAGAATCCAAAACAAGAGCCTTTTGATGAAGTGGTTGTGGAGATATACTGGTGAGGAAGGAACCCTGTGGAAGGAGGTGATAGTGGCAAAGTATGGGGAATTGAACCCATGGTGTACAGAGATAGTGTCAGAACCCTATGGATGGGGAGTATGGAGGACAATCAGAGCTTTATGGAACTCTATGGAAGAAAATGTGTTGCTCAAAGTTGGAAATGGCAAAAAGATTAAGTTTTGGAGAGATGGATGGATTGATCAAGTTCCTCTAAGTGAGTCATTCCCAGATCTTTTCTCAATCTGCAACAACCCTGAAGCCAGAGTATGTGAATGCTGGACAACTCAAGGCTGGG</gDNA_template>
            <first_frame> Q  L  G  E  K  Q  V  D  C  S  Q  G  G  A  S  D  S  R  I  C  K  H  S  R  V  *  S  R  E  V  A  D  N  I  L  G  N  A  T  M  E  Q  T  *  S  F  G  I  W  D  G  I  L  E  K  A  K  K  K  K  I  I  K  M  E  G  S  I  S  I  H  G  G  *  S  D  L  D  Q  L  C  F  R  F  T  A  Y  L  G  Y  V  V  I  S  N  S  S  N  N  Y  Q  R  A  G  *  T  E  K  K  L  P  L  E  K  R  *  R  G  R  K  Q  G  L  L  F  S  E  M  E  K  C  D  A  K  Q  R  K  R  G  T  G  Y  *  K  F  E  N  P  K  Q  E  P  F  D  E  V  V  V  E  I  Y  W  *  G  R  N  P  V  E  G  G  D  S  G  K  V  W  G  I  E  P  M  V  Y  R  D  S  V  R  T  L  W  M  G  S  M  E  D  N  Q  S  F  M  E  L  Y  G  R  K  C  V  A  Q  S  W  K  W  Q  K  D  *  V  L  E  R  W  M  D  *  S  S  S  S  K  *  V  I  P  R  S  F  L  N  L  Q  Q  P  *  S  Q  S  M  *  M  L  D  N  S  R  L   </first_frame>
            <second_frame>  N  W  G  K  S  R  L  I  A  V  K  E  V  P  Q  T  Q  G  F  A  S  I  L  G  S  K  V  E  K  L  P  T  T  Y  L  G  M  P  L  W  S  K  H  K  V  L  V  Y  G  M  E  F  W  K  K  Q  K  K  K  K  L  S  R  W  K  A  Q  Y  L  S  T  G  G  R  V  I  L  I  N  S  V  L  D  S  L  P  T  *  V  M  S  L  F  P  I  P  P  I  I  I  K  E  L  D  R  L  R  R  N  F  L  *  K  K  G  K  E  G  E  S  K  G  Y  Y  L  V  K  W  K  S  V  M  L  S  K  E  K  G  G  L  G  I  R  N  L  R  I  Q  N  K  S  L  L  M  K  W  L  W  R  Y  T  G  E  E  G  T  L  W  K  E  V  I  V  A  K  Y  G  E  L  N  P  W  C  T  E  I  V  S  E  P  Y  G  W  G  V  W  R  T  I  R  A  L  W  N  S  M  E  E  N  V  L  L  K  V  G  N  G  K  K  I  K  F  W  R  D  G  W  I  D  Q  V  P  L  S  E  S  F  P  D  L  F  S  I  C  N  N  P  E  A  R  V  C  E  C  W  T  T  Q  G  W  </second_frame>
            <third_frame>   I  G  G  K  A  G  *  L  Q  S  R  R  C  L  R  L  K  D  L  Q  A  F  *  G  L  K  *  R  S  C  R  Q  H  T  W  E  C  H  Y  G  A  N  I  K  F  W  Y  M  G  W  N  S  G  K  S  K  K  K  K  N  Y  Q  D  G  R  L  N  I  Y  P  R  G  V  E  *  S  *  S  T  L  F  *  I  H  C  L  L  R  L  C  R  Y  F  Q  F  L  Q  *  L  S  K  S  W  I  D  *  E  E  T  S  S  R  K  K  V  K  R  E  K  A  R  V  T  I  *  *  N  G  K  V  *  C  *  A  K  K  K  G  D  W  V  L  E  I  *  E  S  K  T  R  A  F  *  *  S  G  C  G  D  I  L  V  R  K  E  P  C  G  R  R  *  *  W  Q  S  M  G  N  *  T  H  G  V  Q  R  *  C  Q  N  P  M  D  G  E  Y  G  G  Q  S  E  L  Y  G  T  L  W  K  K  M  C  C  S  K  L  E  M  A  K  R  L  S  F  G  E  M  D  G  L  I  K  F  L  *  V  S  H  S  Q  I  F  S  Q  S  A  T  T  L  K  P  E  Y  V  N  A  G  Q  L  K  A  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85682" stop="86125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKGKEGESKGYYLVKWKSVMLSKEKGGLGIRNLRIQNKSLLMKWLWRYTGEEGTLWKEVIVAKYGELNPWCTEIVSEPYGWGVWRTIRALWNSMEENVLLKVGNGKKIKFWRDGWIDQVPLSESFPDLFSICNNPEARVCECWTTQGW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85346" stop="85609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWGKSRLIAVKEVPQTQGFASILGSKVEKLPTTYLGMPLWSKHKVLVYGMEFWKKQKKKKLSRWKAQYLSTGGRVILINSVLDSLPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63807" e_stop="63925"/>
            <exon e_start="65179" e_stop="65305"/>
            <exon e_start="65401" e_stop="65463"/>
            <exon e_start="70686" e_stop="70787"/>
            <exon e_start="70935" e_stop="71103"/>
            <exon e_start="71207" e_stop="71305"/>
            <exon e_start="71423" e_stop="71572"/>
            <exon e_start="79696" e_stop="79735"/>
            <exon e_start="79884" e_stop="79941"/>
            <exon e_start="80052" e_stop="80134"/>
            <exon e_start="81162" e_stop="81260"/>
            <exon e_start="81432" e_stop="81547"/>
            <exon e_start="81623" e_stop="81741"/>
            <exon e_start="89579" e_stop="89649"/>
            <exon e_start="90489" e_stop="90600"/>
            <exon e_start="90789" e_stop="90928"/>
            <exon e_start="91120" e_stop="91278"/>
            <exon e_start="91347" e_stop="91450"/>
            <exon e_start="91725" e_stop="91900"/>
            <exon e_start="96200" e_stop="96309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.188" e_score="0.992"/>
          <exon-intron don_prob="0.969" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.772" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="63807" e_stop="63925" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.188">
            <gDNA_intron_boundary i_start="63926" i_stop="65178" i_length="1253"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65179" e_stop="65305" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65306" i_stop="65400" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65401" e_stop="65463" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.928">
            <gDNA_intron_boundary i_start="65464" i_stop="70685" i_length="5222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70686" e_stop="70787" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.911">
            <gDNA_intron_boundary i_start="70788" i_stop="70934" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70935" e_stop="71103" e_length="169"/>
          </exon>
          <intron i_serial="5" don_prob="0.802" acc_prob="0.932">
            <gDNA_intron_boundary i_start="71104" i_stop="71206" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71207" e_stop="71305" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71306" i_stop="71422" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71423" e_stop="71572" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71573" i_stop="79695" i_length="8123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79696" e_stop="79735" e_length="40"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.964">
            <gDNA_intron_boundary i_start="79736" i_stop="79883" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="79884" e_stop="79941" e_length="58"/>
          </exon>
          <intron i_serial="9" don_prob="0.772" acc_prob="0.716">
            <gDNA_intron_boundary i_start="79942" i_stop="80051" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="80052" e_stop="80134" e_length="83"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="80135" i_stop="81161" i_length="1027"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81162" e_stop="81260" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.839">
            <gDNA_intron_boundary i_start="81261" i_stop="81431" i_length="171"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="81432" e_stop="81547" e_length="116"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81548" i_stop="81622" i_length="75"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="81623" e_stop="81741" e_length="119"/>
          </exon>
          <intron i_serial="13" don_prob="0.854" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81742" i_stop="89578" i_length="7837"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="89579" e_stop="89649" e_length="71"/>
          </exon>
          <intron i_serial="14" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89650" i_stop="90488" i_length="839"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="90489" e_stop="90600" e_length="112"/>
          </exon>
          <intron i_serial="15" don_prob="0.988" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90601" i_stop="90788" i_length="188"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="90789" e_stop="90928" e_length="140"/>
          </exon>
          <intron i_serial="16" don_prob="0.955" acc_prob="0.971">
            <gDNA_intron_boundary i_start="90929" i_stop="91119" i_length="191"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="91120" e_stop="91278" e_length="159"/>
          </exon>
          <intron i_serial="17" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91279" i_stop="91346" i_length="68"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="91347" e_stop="91450" e_length="104"/>
          </exon>
          <intron i_serial="18" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91451" i_stop="91724" i_length="274"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="91725" e_stop="91900" e_length="176"/>
          </exon>
          <intron i_serial="19" don_prob="0.911" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91901" i_stop="96199" i_length="4299"/>
          </intron>
          <exon e_serial="20" e_score="0.964">
            <gDNA_exon_boundary e_start="96200" e_stop="96309" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63925"/>
              <exon start="65179" stop="65305"/>
              <exon start="65401" stop="65463"/>
              <exon start="70686" stop="70787"/>
              <exon start="70935" stop="71103"/>
              <exon start="71207" stop="71305"/>
              <exon start="71423" stop="71572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71514" stop="71572"/>
              <exon start="79696" stop="79735"/>
              <exon start="79884" stop="79941"/>
              <exon start="80052" stop="80134"/>
              <exon start="81162" stop="81260"/>
              <exon start="81432" stop="81547"/>
              <exon start="81623" stop="81741"/>
              <exon start="89579" stop="89649"/>
              <exon start="90489" stop="90589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90489" stop="90600"/>
              <exon start="90789" stop="90928"/>
              <exon start="91120" stop="91278"/>
              <exon start="91347" stop="91450"/>
              <exon start="91725" stop="91900"/>
              <exon start="96200" stop="96309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTGATGAATCTTTCCCCTTGAATTTCCTATTCATCTCCCTTGAAGATCTGGAGGCTCCAGTCATGTTGCGTCCTCACTTGGCTCGCTCCTCCTCTTTACTGTTCCTCTTCATTTTG : TTGCTGAGTCATAGTTCACTTGGTTCTACGGGTGGAAATCGTAAAACAGGGAAGTCATCGGTATTTTCGTTATTTAACCTTAAAGATAGAAGCAAATTCTGGAGCGAGTCTGTTATTCATGGTGGTG : ATTTTGATGATCTGGAAGCATCTAAACCGGAAAAATTGAGTGTTCTCAATTACACCCAGGCAG : GTAATATAGCAAATTATTTAAAGCTTCTGGAAGTTGATTCCATGTACCTTCCGGTACCTGTGAATTTCATTTTTATTGGATTTGAAGGGAAGGGTAATCAAG : AATTTAATCTACAGCCACTGGAACTAGAACGCTGGTTTTCAAAGATTGATCACATCCTTGAACATACAAGGATTCCTCAAGTGGGAGAAGTTTTGACACCATTTTACAAAACTAGCATTGACAGAGAACAGCGTCACCATCTGCCTCTAATAAGCCACATAAACTACAA : TTTCTCTGTTCATGCCATTCAAATGGGTGAAAAGGTCACATCCATCTTTGAGCGTGCCATTGATATCTTTGGCCGCAAGGATGATATGTCTGATAACAG : GGATGATGGAACTGTTCTGTGGCAAGTTGATGTGGATATGATGGATGTTCTCTACACCAGTCTCGTGGAGTATTTACAACTGGAAGATGCCTATAACATCTTCATTTTAAATCCCAAGCGCAATGGAAAAAGAGTCAAATATGGATACAG : GCAAGGGTTATCCGAAAGCGAAATTAACTTTCTTAGGGAG : AATAAGGAGGTACAATCAAAAATTCTTCACTCAGGAAGAGCATCAGAAAGTATCCTTG : CTCTCGAGAAGATGACAAGACCATTGTATGCCAAGCATCCGATGGCAAAGTTTTCATGGACTGTCACAGAAGATACAGATACA : GCAGAATGGTATACTAGATGCGTTGATGTATTAAACAATGTTGAGAAGGTATCTCAAGGAAAGGACATGGCTGAAGTTGTGCAGAACAAGGTTATGCAG : TTTCTGAATGGGAGAAATGGAGAATTGAAGCTTCGTTTTGAGAGAGAGTTAAAGGCTGGGAAATTTAGCGGTTTTCATGCTGAATGTCTCACTGATACTTGGATTGGAAATCACAG : GTGGGCATTTATTGATTTGACTGCGGGCCCTTTTTCATGGGGACCTGCTGTGGGTGGAGAAGGTGTGCGCACAGAACTAAGTTTACCAAATGTGGAGAAAACCATCGGTGCGGTTGCAG : AAATTTCAGAAGACGAAGCAGAAAATCTATTGCAAGAGGCTATTCAAGAGAAGTTTGCTGTGTTTGGTGAT : GTACAGAAAGATCATCAAGCCATAGATATTCTTTTAGCTGAAATAGATATATATGAACTATTTGCTTTCAATCATTGCAAGGGAAGGAAGGTCAAGCTTGCTCTTTGTGAAG : AGCTTGACGAGAGAATGCAAGATTTGAAAAATGAGCTGCAATCTTTTGAGGGTGAGGGGTCTGATGAAAGCCATAGGACAAAGGCTGTAGATGCACTGAAAAGGATGGAGAACTGGAACCTGTTTAGTGAATCTTATGAG : GACTACAAAAATTATACAGTTGCTCGTGACACTTTCCTTGCACATTTGGGGGCAACCTTATGGGGGTCAATGAGACACATCATTTCTCCATCACTTGCTGATGGGGCATTCCACTACTATGAGAAAATCTCTTTTCAGTTATTCTTTATCACACAGGAG : AAATTTAGAAATATTAAGCAGTTACCTGTTGACCTCAAAACTATCATGAATGGTCTTTCATCATTGGTCCTATCTTCTCAGGAAGTGATGTTCAGTCCGCACAT : GTTGCCGCTGTCAGAGGATCCTGCTTTAGCTATGGCGTTTTCAGTAGCCCGGAGAGCGGCAGCTGTTCCCCTGTTGCTTGTGAATGGAACGTATAGGAAAACGGTTCGTTCCTATCTGGATTCCTCCATTCTCCAACATCAGTTGCAGAGATTGAATGATCATGGTTCTTTGAAAG : GTTCACATGCACATAGCAGATCTACCCTTGAAGTCCCTATCTTTTGGTTTATTCATAGTGATCCCTTGTTAGTTGACAAGCATTATCAAGCCAAAGCGCTTTCCGATATG</gDNA_template>
            <first_frame> Q  L  M  N  L  S  P  *  I  S  Y  S  S  P  L  K  I  W  R  L  Q  S  C  C  V  L  T  W  L  A  P  P  L  Y  C  S  S  S  F  C :   C  *  V  I  V  H  L  V  L  R  V  E  I  V  K  Q  G  S  H  R  Y  F  R  Y  L  T  L  K  I  E  A  N  S  G  A  S  L  L  F  M  V  V  :  I  L  M  I  W  K  H  L  N  R  K  N  *  V  F  S  I  T  P  R  Q  :  V  I  *  Q  I  I  *  S  F  W  K  L  I  P  C  T  F  R  Y  L  *  I  S  F  L  L  D  L  K  G  R  V  I  K  :  N  L  I  Y  S  H  W  N  *  N  A  G  F  Q  R  L  I  T  S  L  N  I  Q  G  F  L  K  W  E  K  F  *  H  H  F  T  K  L  A  L  T  E  N  S  V  T  I  C  L  *  *  A  T  *  T  T   : I  S  L  F  M  P  F  K  W  V  K  R  S  H  P  S  L  S  V  P  L  I  S  L  A  A  R  M  I  C  L  I  T   : G  M  M  E  L  F  C  G  K  L  M  W  I  *  W  M  F  S  T  P  V  S  W  S  I  Y  N  W  K  M  P  I  T  S  S  F  *  I  P  S  A  M  E  K  E  S  N  M  D  T   : G  K  G  Y  P  K  A  K  L  T  F  L  G  R :   I  R  R  Y  N  Q  K  F  F  T  Q  E  E  H  Q  K  V  S  L  :  L  S  R  R  *  Q  D  H  C  M  P  S  I  R  W  Q  S  F  H  G  L  S  Q  K  I  Q  I  Q :   Q  N  G  I  L  D  A  L  M  Y  *  T  M  L  R  R  Y  L  K  E  R  T  W  L  K  L  C  R  T  R  L  C  S :   F  *  M  G  E  M  E  N  *  S  F  V  L  R  E  S  *  R  L  G  N  L  A  V  F  M  L  N  V  S  L  I  L  G  L  E  I  T   : G  G  H  L  L  I  *  L  R  A  L  F  H  G  D  L  L  W  V  E  K  V  C  A  Q  N  *  V  Y  Q  M  W  R  K  P  S  V  R  L  Q  :  K  F  Q  K  T  K  Q  K  I  Y  C  K  R  L  F  K  R  S  L  L  C  L  V  M :   Y  R  K  I  I  K  P  *  I  F  F  *  L  K  *  I  Y  M  N  Y  L  L  S  I  I  A  R  E  G  R  S  S  L  L  F  V  K  :  S  L  T  R  E  C  K  I  *  K  M  S  C  N  L  L  R  V  R  G  L  M  K  A  I  G  Q  R  L  *  M  H  *  K  G  W  R  T  G  T  C  L  V  N  L  M  R :   T  T  K  I  I  Q  L  L  V  T  L  S  L  H  I  W  G  Q  P  Y  G  G  Q  *  D  T  S  F  L  H  H  L  L  M  G  H  S  T  T  M  R  K  S  L  F  S  Y  S  L  S  H  R  R :   N  L  E  I  L  S  S  Y  L  L  T  S  K  L  S  *  M  V  F  H  H  W  S  Y  L  L  R  K  *  C  S  V  R  T   : C  C  R  C  Q  R  I  L  L  *  L  W  R  F  Q  *  P  G  E  R  Q  L  F  P  C  C  L  *  M  E  R  I  G  K  R  F  V  P  I  W  I  P  P  F  S  N  I  S  C  R  D  *  M  I  M  V  L  *  K  :  V  H  M  H  I  A  D  L  P  L  K  S  L  S  F  G  L  F  I  V  I  P  C  *  L  T  S  I  I  K  P  K  R  F  P  I   </first_frame>
            <second_frame>  S  *  *  I  F  P  L  E  F  P  I  H  L  P  *  R  S  G  G  S  S  H  V  A  S  S  L  G  S  L  L  L  F  T  V  P  L  H  F   : V  A  E  S  *  F  T  W  F  Y  G  W  K  S  *  N  R  E  V  I  G  I  F  V  I  *  P  *  R  *  K  Q  I  L  E  R  V  C  Y  S  W  W  * :   F  *  *  S  G  S  I  *  T  G  K  I  E  C  S  Q  L  H  P  G  R :   *  Y  S  K  L  F  K  A  S  G  S  *  F  H  V  P  S  G  T  C  E  F  H  F  Y  W  I  *  R  E  G  *  S  R :   I  *  S  T  A  T  G  T  R  T  L  V  F  K  D  *  S  H  P  *  T  Y  K  D  S  S  S  G  R  S  F  D  T  I  L  Q  N  *  H  *  Q  R  T  A  S  P  S  A  S  N  K  P  H  K  L  Q  :  F  L  C  S  C  H  S  N  G  *  K  G  H  I  H  L  *  A  C  H  *  Y  L  W  P  Q  G  *  Y  V  *  *  Q  :  G  *  W  N  C  S  V  A  S  *  C  G  Y  D  G  C  S  L  H  Q  S  R  G  V  F  T  T  G  R  C  L  *  H  L  H  F  K  S  Q  A  Q  W  K  K  S  Q  I  W  I  Q  :  A  R  V  I  R  K  R  N  *  L  S  *  G   : E  *  G  G  T  I  K  N  S  S  L  R  K  S  I  R  K  Y  P  C :   S  R  E  D  D  K  T  I  V  C  Q  A  S  D  G  K  V  F  M  D  C  H  R  R  Y  R  Y   : S  R  M  V  Y  *  M  R  *  C  I  K  Q  C  *  E  G  I  S  R  K  G  H  G  *  S  C  A  E  Q  G  Y  A   : V  S  E  W  E  K  W  R  I  E  A  S  F  *  E  R  V  K  G  W  E  I  *  R  F  S  C  *  M  S  H  *  Y  L  D  W  K  S  Q  :  V  G  I  Y  *  F  D  C  G  P  F  F  M  G  T  C  C  G  W  R  R  C  A  H  R  T  K  F  T  K  C  G  E  N  H  R  C  G  C  R :   N  F  R  R  R  S  R  K  S  I  A  R  G  Y  S  R  E  V  C  C  V  W  *   : C  T  E  R  S  S  S  H  R  Y  S  F  S  *  N  R  Y  I  *  T  I  C  F  Q  S  L  Q  G  K  E  G  Q  A  C  S  L  *  R :   A  *  R  E  N  A  R  F  E  K  *  A  A  I  F  *  G  *  G  V  *  *  K  P  *  D  K  G  C  R  C  T  E  K  D  G  E  L  E  P  V  *  *  I  L  *   : G  L  Q  K  L  Y  S  C  S  *  H  F  P  C  T  F  G  G  N  L  M  G  V  N  E  T  H  H  F  S  I  T  C  *  W  G  I  P  L  L  *  E  N  L  F  S  V  I  L  Y  H  T  G   : E  I  *  K  Y  *  A  V  T  C  *  P  Q  N  Y  H  E  W  S  F  I  I  G  P  I  F  S  G  S  D  V  Q  S  A  H  :  V  A  A  V  R  G  S  C  F  S  Y  G  V  F  S  S  P  E  S  G  S  C  S  P  V  A  C  E  W  N  V  *  E  N  G  S  F  L  S  G  F  L  H  S  P  T  S  V  A  E  I  E  *  S  W  F  F  E  R :   F  T  C  T  *  Q  I  Y  P  *  S  P  Y  L  L  V  Y  S  *  *  S  L  V  S  *  Q  A  L  S  S  Q  S  A  F  R  Y  </second_frame>
            <third_frame>   V  D  E  S  F  P  L  N  F  L  F  I  S  L  E  D  L  E  A  P  V  M  L  R  P  H  L  A  R  S  S  S  L  L  F  L  F  I  L  :  L  L  S  H  S  S  L  G  S  T  G  G  N  R  K  T  G  K  S  S  V  F  S  L  F  N  L  K  D  R  S  K  F  W  S  E  S  V  I  H  G  G   : D  F  D  D  L  E  A  S  K  P  E  K  L  S  V  L  N  Y  T  Q  A   : G  N  I  A  N  Y  L  K  L  L  E  V  D  S  M  Y  L  P  V  P  V  N  F  I  F  I  G  F  E  G  K  G  N  Q   : E  F  N  L  Q  P  L  E  L  E  R  W  F  S  K  I  D  H  I  L  E  H  T  R  I  P  Q  V  G  E  V  L  T  P  F  Y  K  T  S  I  D  R  E  Q  R  H  H  L  P  L  I  S  H  I  N  Y  N :   F  S  V  H  A  I  Q  M  G  E  K  V  T  S  I  F  E  R  A  I  D  I  F  G  R  K  D  D  M  S  D  N  R :   D  D  G  T  V  L  W  Q  V  D  V  D  M  M  D  V  L  Y  T  S  L  V  E  Y  L  Q  L  E  D  A  Y  N  I  F  I  L  N  P  K  R  N  G  K  R  V  K  Y  G  Y  R :   Q  G  L  S  E  S  E  I  N  F  L  R  E  :  N  K  E  V  Q  S  K  I  L  H  S  G  R  A  S  E  S  I  L   : A  L  E  K  M  T  R  P  L  Y  A  K  H  P  M  A  K  F  S  W  T  V  T  E  D  T  D  T  :  A  E  W  Y  T  R  C  V  D  V  L  N  N  V  E  K  V  S  Q  G  K  D  M  A  E  V  V  Q  N  K  V  M  Q  :  F  L  N  G  R  N  G  E  L  K  L  R  F  E  R  E  L  K  A  G  K  F  S  G  F  H  A  E  C  L  T  D  T  W  I  G  N  H  R :   W  A  F  I  D  L  T  A  G  P  F  S  W  G  P  A  V  G  G  E  G  V  R  T  E  L  S  L  P  N  V  E  K  T  I  G  A  V  A   : E  I  S  E  D  E  A  E  N  L  L  Q  E  A  I  Q  E  K  F  A  V  F  G  D  :  V  Q  K  D  H  Q  A  I  D  I  L  L  A  E  I  D  I  Y  E  L  F  A  F  N  H  C  K  G  R  K  V  K  L  A  L  C  E   : E  L  D  E  R  M  Q  D  L  K  N  E  L  Q  S  F  E  G  E  G  S  D  E  S  H  R  T  K  A  V  D  A  L  K  R  M  E  N  W  N  L  F  S  E  S  Y  E  :  D  Y  K  N  Y  T  V  A  R  D  T  F  L  A  H  L  G  A  T  L  W  G  S  M  R  H  I  I  S  P  S  L  A  D  G  A  F  H  Y  Y  E  K  I  S  F  Q  L  F  F  I  T  Q  E  :  K  F  R  N  I  K  Q  L  P  V  D  L  K  T  I  M  N  G  L  S  S  L  V  L  S  S  Q  E  V  M  F  S  P  H  M :   L  P  L  S  E  D  P  A  L  A  M  A  F  S  V  A  R  R  A  A  A  V  P  L  L  L  V  N  G  T  Y  R  K  T  V  R  S  Y  L  D  S  S  I  L  Q  H  Q  L  Q  R  L  N  D  H  G  S  L  K   : G  S  H  A  H  S  R  S  T  L  E  V  P  I  F  W  F  I  H  S  D  P  L  L  V  D  K  H  Y  Q  A  K  A  L  S  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63809" stop="63925"/>
                    <exon start="65179" stop="65305"/>
                    <exon start="65401" stop="65463"/>
                    <exon start="70686" stop="70787"/>
                    <exon start="70935" stop="71103"/>
                    <exon start="71207" stop="71305"/>
                    <exon start="71423" stop="71572"/>
                    <exon start="79696" stop="79735"/>
                    <exon start="79884" stop="79941"/>
                    <exon start="80052" stop="80134"/>
                    <exon start="81162" stop="81260"/>
                    <exon start="81432" stop="81547"/>
                    <exon start="81623" stop="81741"/>
                    <exon start="89579" stop="89649"/>
                    <exon start="90489" stop="90600"/>
                    <exon start="90789" stop="90928"/>
                    <exon start="91120" stop="91278"/>
                    <exon start="91347" stop="91450"/>
                    <exon start="91725" stop="91900"/>
                    <exon start="96200" stop="96309"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2214</number_coding_nucleotides>
                  <number_encoded_amino_acids>738</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDESFPLNFLFISLEDLEAPVMLRPHLARSSSLLFLFILLLSHSSLGSTGGNRKTGKSSVFSLFNLKDRSKFWSESVIHGGDFDDLEASKPEKLSVLNYTQAGNIANYLKLLEVDSMYLPVPVNFIFIGFEGKGNQEFNLQPLELERWFSKIDHILEHTRIPQVGEVLTPFYKTSIDREQRHHLPLISHINYNFSVHAIQMGEKVTSIFERAIDIFGRKDDMSDNRDDGTVLWQVDVDMMDVLYTSLVEYLQLEDAYNIFILNPKRNGKRVKYGYRQGLSESEINFLRENKEVQSKILHSGRASESILALEKMTRPLYAKHPMAKFSWTVTEDTDTAEWYTRCVDVLNNVEKVSQGKDMAEVVQNKVMQFLNGRNGELKLRFERELKAGKFSGFHAECLTDTWIGNHRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVEKTIGAVAEISEDEAENLLQEAIQEKFAVFGDVQKDHQAIDILLAEIDIYELFAFNHCKGRKVKLALCEELDERMQDLKNELQSFEGEGSDESHRTKAVDALKRMENWNLFSESYEDYKNYTVARDTFLAHLGATLWGSMRHIISPSLADGAFHYYEKISFQLFFITQEKFRNIKQLPVDLKTIMNGLSSLVLSSQEVMFSPHMLPLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTVRSYLDSSILQHQLQRLNDHGSLKGSHAHSRSTLEVPIFWFIHSDPLLVDKHYQAKALSDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="99907" PGL_stop="100389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99907" e_stop="100389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="99907" e_stop="100389" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99907" stop="100389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99974" stop="100389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCCATCCAGTACATTGCACCCGTCGAAGAGAAGTTAAGGTCGAGTTTGACATGACAACAATACCTGCTTTCCTCGTTGTTTTCTTCGTTCTTTGGTTTGTGCTAAAGCCTAGAAGAGCCAAGCCCAAGATCAACTGAGAGTTTCGTGGTTGGCATGCCTTGAAAATGCGTGTTAAACTTAGTTTCCTCAAGCATGATTTCCCCTGCTGGGGAACTCTGTTGAGCCAATAGAGCTGTCTTACGCAACACTGGACTAGAAAGCATAGGCAAGATAGGTAGAATAGCTAGGTCAAAATCATAGTGTCTTTGCTTTGTAAATTTTCACCTCCCAGTATTATTACAGCTGAGATTTTGCTCGGGATCATCAAGTCTTATTTTTTCTTGTTAGTAACTATTGTAATTGTGCTCAGTGCATGCCTTAATACTGTGTACATCTCAACAAATGATATCATTGGTTACAATTTACAATAGCAATGTGAAC</gDNA_template>
            <first_frame> V  S  I  Q  Y  I  A  P  V  E  E  K  L  R  S  S  L  T  *  Q  Q  Y  L  L  S  S  L  F  S  S  F  F  G  L  C  *  S  L  E  E  P  S  P  R  S  T  E  S  F  V  V  G  M  P  *  K  C  V  L  N  L  V  S  S  S  M  I  S  P  A  G  E  L  C  *  A  N  R  A  V  L  R  N  T  G  L  E  S  I  G  K  I  G  R  I  A  R  S  K  S  *  C  L  C  F  V  N  F  H  L  P  V  L  L  Q  L  R  F  C  S  G  S  S  S  L  I  F  S  C  *  *  L  L  *  L  C  S  V  H  A  L  I  L  C  T  S  Q  Q  M  I  S  L  V  T  I  Y  N  S  N  V  N </first_frame>
            <second_frame>  S  P  S  S  T  L  H  P  S  K  R  S  *  G  R  V  *  H  D  N  N  T  C  F  P  R  C  F  L  R  S  L  V  C  A  K  A  *  K  S  Q  A  Q  D  Q  L  R  V  S  W  L  A  C  L  E  N  A  C  *  T  *  F  P  Q  A  *  F  P  L  L  G  N  S  V  E  P  I  E  L  S  Y  A  T  L  D  *  K  A  *  A  R  *  V  E  *  L  G  Q  N  H  S  V  F  A  L  *  I  F  T  S  Q  Y  Y  Y  S  *  D  F  A  R  D  H  Q  V  L  F  F  L  V  S  N  Y  C  N  C  A  Q  C  M  P  *  Y  C  V  H  L  N  K  *  Y  H  W  L  Q  F  T  I  A  M  *   </second_frame>
            <third_frame>   L  H  P  V  H  C  T  R  R  R  E  V  K  V  E  F  D  M  T  T  I  P  A  F  L  V  V  F  F  V  L  W  F  V  L  K  P  R  R  A  K  P  K  I  N  *  E  F  R  G  W  H  A  L  K  M  R  V  K  L  S  F  L  K  H  D  F  P  C  W  G  T  L  L  S  Q  *  S  C  L  T  Q  H  W  T  R  K  H  R  Q  D  R  *  N  S  *  V  K  I  I  V  S  L  L  C  K  F  S  P  P  S  I  I  T  A  E  I  L  L  G  I  I  K  S  Y  F  F  L  L  V  T  I  V  I  V  L  S  A  C  L  N  T  V  Y  I  S  T  N  D  I  I  G  Y  N  L  Q  *  Q  C  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0032K07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="102097" PGL_stop="100795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102097" e_stop="102060"/>
            <exon e_start="101188" e_stop="100795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102097" e_stop="102060" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="102059" i_stop="101189" i_length="871"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101188" e_stop="100795" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102097" stop="102060"/>
              <exon start="101188" stop="100795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGGACCTTCACCCTTGCTGGTGTTTATTGTCCAGAG : ATTTATCCAACCTCAGTTAGATCAACTGGTTGTGGAGTTGCAAGTGCTGTGGGGAGAATTGCAGGGATGGTCTCTCCTATAGTTGCAGTGCAATTGGTTAGAGGTTGCCACCAGATGGCTGCAATCATTTTATTTGAAGTGGTTGTTATTTTATCAGCAATTAGTGTTCTGCTCTTTCCAGTTGAGACCAAGGGGCGTGAGCTTGTTGATCATGTCTCTGTATAGGAAATCGTATACCAATTACTATGTTATGTTAATGTGTTCTCCACATTGGAGGGAAATCTATTGAAGACACAGCTCTCTAAGTCATGTTGGTACTATTTACAGTATCATGTTCCAACCTCAAATTTCGTTAATCATGTAAGATGTTATCTTATCAATGTATAGAAGTTAA</gDNA_template>
            <first_frame> *  G  P  S  P  L  L  V  F  I  V  Q  R :   F  I  Q  P  Q  L  D  Q  L  V  V  E  L  Q  V  L  W  G  E  L  Q  G  W  S  L  L  *  L  Q  C  N  W  L  E  V  A  T  R  W  L  Q  S  F  Y  L  K  W  L  L  F  Y  Q  Q  L  V  F  C  S  F  Q  L  R  P  R  G  V  S  L  L  I  M  S  L  Y  R  K  S  Y  T  N  Y  Y  V  M  L  M  C  S  P  H  W  R  E  I  Y  *  R  H  S  S  L  S  H  V  G  T  I  Y  S  I  M  F  Q  P  Q  I  S  L  I  M  *  D  V  I  L  S  M  Y  R  S  * </first_frame>
            <second_frame>  R  D  L  H  P  C  W  C  L  L  S  R   : D  L  S  N  L  S  *  I  N  W  L  W  S  C  K  C  C  G  E  N  C  R  D  G  L  S  Y  S  C  S  A  I  G  *  R  L  P  P  D  G  C  N  H  F  I  *  S  G  C  Y  F  I  S  N  *  C  S  A  L  S  S  *  D  Q  G  A  *  A  C  *  S  C  L  C  I  G  N  R  I  P  I  T  M  L  C  *  C  V  L  H  I  G  G  K  S  I  E  D  T  A  L  *  V  M  L  V  L  F  T  V  S  C  S  N  L  K  F  R  *  S  C  K  M  L  S  Y  Q  C  I  E  V   </second_frame>
            <third_frame>   G  T  F  T  L  A  G  V  Y  C  P  E  :  I  Y  P  T  S  V  R  S  T  G  C  G  V  A  S  A  V  G  R  I  A  G  M  V  S  P  I  V  A  V  Q  L  V  R  G  C  H  Q  M  A  A  I  I  L  F  E  V  V  V  I  L  S  A  I  S  V  L  L  F  P  V  E  T  K  G  R  E  L  V  D  H  V  S  V  *  E  I  V  Y  Q  L  L  C  Y  V  N  V  F  S  T  L  E  G  N  L  L  K  T  Q  L  S  K  S  C  W  Y  Y  L  Q  Y  H  V  P  T  S  N  F  V  N  H  V  R  C  Y  L  I  N  V  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102095" stop="102060"/>
                    <exon start="101188" stop="100964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTFTLAGVYCPEIYPTSVRSTGCGVASAVGRIAGMVSPIVAVQLVRGCHQMAAIILFEVVVILSAISVLLFPVETKGRELVDHVSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101106" stop="100900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQCNWLEVATRWLQSFYLKWLLFYQQLVFCSFQLRPRGVSLLIMSLYRKSYTNYYVMLMCSPHWREIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="103005" PGL_stop="102372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103005" e_stop="102372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="103005" e_stop="102372" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103005" stop="102372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103005" stop="102413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103005" stop="102481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103004" stop="102502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTAGTTTTTTATTGTTGACAGTTTGTAGTGCTCCCAAACAGTTAGTAATTAATGAAAAAAATGAAAACAAAGAAGAGTCTATATCTTACTATATTTGTAATATTTGAAAAACTTAGTGCAACTTGCTTGGTATTTCTTGCAGATTATCATGCCAAGACTAGGTTGGAGATGGTTATTGGCTTTATCGTCTATACCATCATTTGCAGCTTTTCTCTTGTACATTTTTACTGTAGAGTCTCCTAGATATCTATGTGCCGAAGGTAGAATAACTGATGCACATGATATTTTGAGGAAAATAGCTGTTGTTAATCAGACAAAACTTCCCCCTGGGATGCTTGTTTCTGATCAAGTGATAGAGCTGGATGAGGAACAGAAATTGCTTAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCACAATTACTACGAATTACCCTCCTCATGTGGGTGGTTTATTTTGGAAATTCATTTGCCTATTATGGCATTATATTGCTGACATCACAGTTTAGTGCTGGGGAAAATAGATGCTTCTCAGTTGCTTTGCATGTGAAAAATGATTCAAGCCTCTATACAGACGTGTTCATCACTAGCCTTGCTG</gDNA_template>
            <first_frame> L  *  F  F  I  V  D  S  L  *  C  S  Q  T  V  S  N  *  *  K  K  *  K  Q  R  R  V  Y  I  L  L  Y  L  *  Y  L  K  N  L  V  Q  L  A  W  Y  F  L  Q  I  I  M  P  R  L  G  W  R  W  L  L  A  L  S  S  I  P  S  F  A  A  F  L  L  Y  I  F  T  V  E  S  P  R  Y  L  C  A  E  G  R  I  T  D  A  H  D  I  L  R  K  I  A  V  V  N  Q  T  K  L  P  P  G  M  L  V  S  D  Q  V  I  E  L  D  E  E  Q  K  L  L  R  P  R  A  N  K  I  F  N  F  K  T  G  L  S  S  S  L  M  L  L  S  P  Q  L  L  R  I  T  L  L  M  W  V  V  Y  F  G  N  S  F  A  Y  Y  G  I  I  L  L  T  S  Q  F  S  A  G  E  N  R  C  F  S  V  A  L  H  V  K  N  D  S  S  L  Y  T  D  V  F  I  T  S  L  A  </first_frame>
            <second_frame>  C  S  F  L  L  L  T  V  C  S  A  P  K  Q  L  V  I  N  E  K  N  E  N  K  E  E  S  I  S  Y  Y  I  C  N  I  *  K  T  *  C  N  L  L  G  I  S  C  R  L  S  C  Q  D  *  V  G  D  G  Y  W  L  Y  R  L  Y  H  H  L  Q  L  F  S  C  T  F  L  L  *  S  L  L  D  I  Y  V  P  K  V  E  *  L  M  H  M  I  F  *  G  K  *  L  L  L  I  R  Q  N  F  P  L  G  C  L  F  L  I  K  *  *  S  W  M  R  N  R  N  C  L  G  R  E  P  T  K  S  S  I  L  R  Q  D  C  L  H  P  *  C  F  Y  P  H  N  Y  Y  E  L  P  S  S  C  G  W  F  I  L  E  I  H  L  P  I  M  A  L  Y  C  *  H  H  S  L  V  L  G  K  I  D  A  S  Q  L  L  C  M  *  K  M  I  Q  A  S  I  Q  T  C  S  S  L  A  L  L </second_frame>
            <third_frame>   V  V  F  Y  C  *  Q  F  V  V  L  P  N  S  *  *  L  M  K  K  M  K  T  K  K  S  L  Y  L  T  I  F  V  I  F  E  K  L  S  A  T  C  L  V  F  L  A  D  Y  H  A  K  T  R  L  E  M  V  I  G  F  I  V  Y  T  I  I  C  S  F  S  L  V  H  F  Y  C  R  V  S  *  I  S  M  C  R  R  *  N  N  *  C  T  *  Y  F  E  E  N  S  C  C  *  S  D  K  T  S  P  W  D  A  C  F  *  S  S  D  R  A  G  *  G  T  E  I  A  *  A  E  S  Q  Q  N  L  Q  F  *  D  R  I  V  F  I  P  D  A  F  I  P  T  I  T  T  N  Y  P  P  H  V  G  G  L  F  W  K  F  I  C  L  L  W  H  Y  I  A  D  I  T  V  *  C  W  G  K  *  M  L  L  S  C  F  A  C  E  K  *  F  K  P  L  Y  R  R  V  H  H  *  P  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102903" stop="102373"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLKNLVQLAWYFLQIIMPRLGWRWLLALSSIPSFAAFLLYIFTVESPRYLCAEGRITDAHDILRKIAVVNQTKLPPGMLVSDQVIELDEEQKLLRPRANKIFNFKTGLSSSLMLLSPQLLRITLLMWVVYFGNSFAYYGIILLTSQFSAGENRCFSVALHVKNDSSLYTDVFITSLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="106632" PGL_stop="105873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106632" e_stop="106569"/>
            <exon e_start="106430" e_stop="105873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.027" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106632" e_stop="106569" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.027" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106568" i_stop="106431" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106430" e_stop="105873" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106632" stop="106569"/>
              <exon start="106430" stop="105873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCCTTCTCTGATTTGAACAGAAAGAGACGTGAGGAAGAGAAGATTAATGTGATAAAGGAG : ATGGCACCGCAACAGCAGCAGGTGGAGGAGGAAGATGAACATGTGTACACACTGGACGAAGCTCTTACAGCTCTGGGTTTTGGCAAATTCCAGTATTTGGTGTTGTGTTATGCGGGTCTTGGATCAATGGTGGATGCTGTTGAAGTTATGATTCTTTCTTTTATTGGACCAGCTGTTAAGTCTCAATGGGGGCTTTCTTCTACACAAGAAACTCTTATTACTACTGTTGTGTTTGCTGGCATGCTTATTGGAGCTTACTTTTGGGGAATTCTTGCTGACAACTATGGAAGACGGCAAGCCTATTTAACCTTTTTTAATATTTATTGAAAAAGTTTATGTTTGTGTTTTTCTTTTTAGATTGGGTGAATTGTGAATGATCATATTTGAGTCTGTAGATTGCTTAATTGTTGTTTGGTTTAAGTTGTCATGGATGATTATACACTTTCATTTTCCATCACCAGGAAAAGTCTTCTGATTGTGGCAATAGTGACAACCGTATCTGCATTTCTGAGTTCCTTTTCTCCAAACTATATATCACTGCTCATTCTTCGTATGCTG</gDNA_template>
            <first_frame> F  L  L  L  *  F  E  Q  K  E  T  *  G  R  E  D  *  C  D  K  G   : D  G  T  A  T  A  A  G  G  G  G  R  *  T  C  V  H  T  G  R  S  S  Y  S  S  G  F  W  Q  I  P  V  F  G  V  V  L  C  G  S  W  I  N  G  G  C  C  *  S  Y  D  S  F  F  Y  W  T  S  C  *  V  S  M  G  A  F  F  Y  T  R  N  S  Y  Y  Y  C  C  V  C  W  H  A  Y  W  S  L  L  L  G  N  S  C  *  Q  L  W  K  T  A  S  L  F  N  L  F  *  Y  L  L  K  K  F  M  F  V  F  F  F  L  D  W  V  N  C  E  *  S  Y  L  S  L  *  I  A  *  L  L  F  G  L  S  C  H  G  *  L  Y  T  F  I  F  H  H  Q  E  K  S  S  D  C  G  N  S  D  N  R  I  C  I  S  E  F  L  F  S  K  L  Y  I  T  A  H  S  S  Y  A  </first_frame>
            <second_frame>  F  S  F  S  D  L  N  R  K  R  R  E  E  E  K  I  N  V  I  K  E  :  M  A  P  Q  Q  Q  Q  V  E  E  E  D  E  H  V  Y  T  L  D  E  A  L  T  A  L  G  F  G  K  F  Q  Y  L  V  L  C  Y  A  G  L  G  S  M  V  D  A  V  E  V  M  I  L  S  F  I  G  P  A  V  K  S  Q  W  G  L  S  S  T  Q  E  T  L  I  T  T  V  V  F  A  G  M  L  I  G  A  Y  F  W  G  I  L  A  D  N  Y  G  R  R  Q  A  Y  L  T  F  F  N  I  Y  *  K  S  L  C  L  C  F  S  F  *  I  G  *  I  V  N  D  H  I  *  V  C  R  L  L  N  C  C  L  V  *  V  V  M  D  D  Y  T  L  S  F  S  I  T  R  K  S  L  L  I  V  A  I  V  T  T  V  S  A  F  L  S  S  F  S  P  N  Y  I  S  L  L  I  L  R  M  L </second_frame>
            <third_frame>   S  P  S  L  I  *  T  E  R  D  V  R  K  R  R  L  M  *  *  R  R :   W  H  R  N  S  S  R  W  R  R  K  M  N  M  C  T  H  W  T  K  L  L  Q  L  W  V  L  A  N  S  S  I  W  C  C  V  M  R  V  L  D  Q  W  W  M  L  L  K  L  *  F  F  L  L  L  D  Q  L  L  S  L  N  G  G  F  L  L  H  K  K  L  L  L  L  L  L  C  L  L  A  C  L  L  E  L  T  F  G  E  F  L  L  T  T  M  E  D  G  K  P  I  *  P  F  L  I  F  I  E  K  V  Y  V  C  V  F  L  F  R  L  G  E  L  *  M  I  I  F  E  S  V  D  C  L  I  V  V  W  F  K  L  S  W  M  I  I  H  F  H  F  P  S  P  G  K  V  F  *  L  W  Q  *  *  Q  P  Y  L  H  F  *  V  P  F  L  Q  T  I  Y  H  C  S  F  F  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106631" stop="106569"/>
                    <exon start="106430" stop="106104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFSDLNRKRREEEKINVIKEMAPQQQQVEEEDEHVYTLDEALTALGFGKFQYLVLCYAGLGSMVDAVEVMILSFIGPAVKSQWGLSSTQETLITTVVFAGMLIGAYFWGILADNYGRRQAYLTFFNIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="118634" PGL_stop="118079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118634" e_stop="118079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="118634" e_stop="118079" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118634" stop="118079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118490" stop="118079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118371" stop="118092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAGAACATGACTGCTGTGCAGGCAGCTTTTGCAGTTGTCAACAAAGGTGTCCGTCCAACCATCCCCACTGATTGTTTACCTGTCCTAGCTGAAATCATGACTTGCTGCTGGGATGGTAACCCTGACAATAGACCTCCGTTCTCTCAGGTGGTCAGAATGCTTGAGGCTGCAGAAACAGAGATCTTGACGAAGGTCAGAAAAGCCCGTTTCAGATGCTGCATTAGTCAACCCATGACTACAGATTGATATGGAAAGAGAAACTGTAGGTGCAGTAAAGGGCAAGAGTAAAGGATTTGGAAAGGCTAAGCTGAAGTGATTCCAAAGTCTGGCATGTGTATCTATGAGGCATAATTTCTTTGCTCAGATAGAAAAAAGGGGAGAAAGTTATGACAAGGAACTGTTTGATTTTGTGTTGTATCTTCTTTTGATTTCCTTTTCTTCTTGAATTTAAGATTCTGATTAGTGATAATAGAAGAGTATGTGTATGTATACATGTCCATTTATGGCTGTGTTTTATTTTACTTTAATCAAATTTTACCAGGTGTCCACATGCA</gDNA_template>
            <first_frame> S  R  T  *  L  L  C  R  Q  L  L  Q  L  S  T  K  V  S  V  Q  P  S  P  L  I  V  Y  L  S  *  L  K  S  *  L  A  A  G  M  V  T  L  T  I  D  L  R  S  L  R  W  S  E  C  L  R  L  Q  K  Q  R  S  *  R  R  S  E  K  P  V  S  D  A  A  L  V  N  P  *  L  Q  I  D  M  E  R  E  T  V  G  A  V  K  G  K  S  K  G  F  G  K  A  K  L  K  *  F  Q  S  L  A  C  V  S  M  R  H  N  F  F  A  Q  I  E  K  R  G  E  S  Y  D  K  E  L  F  D  F  V  L  Y  L  L  L  I  S  F  S  S  *  I  *  D  S  D  *  *  *  *  K  S  M  C  M  Y  T  C  P  F  M  A  V  F  Y  F  T  L  I  K  F  Y  Q  V  S  T  C  </first_frame>
            <second_frame>  P  E  H  D  C  C  A  G  S  F  C  S  C  Q  Q  R  C  P  S  N  H  P  H  *  L  F  T  C  P  S  *  N  H  D  L  L  L  G  W  *  P  *  Q  *  T  S  V  L  S  G  G  Q  N  A  *  G  C  R  N  R  D  L  D  E  G  Q  K  S  P  F  Q  M  L  H  *  S  T  H  D  Y  R  L  I  W  K  E  K  L  *  V  Q  *  R  A  R  V  K  D  L  E  R  L  S  *  S  D  S  K  V  W  H  V  Y  L  *  G  I  I  S  L  L  R  *  K  K  G  E  K  V  M  T  R  N  C  L  I  L  C  C  I  F  F  *  F  P  F  L  L  E  F  K  I  L  I  S  D  N  R  R  V  C  V  C  I  H  V  H  L  W  L  C  F  I  L  L  *  S  N  F  T  R  C  P  H  A </second_frame>
            <third_frame>   Q  N  M  T  A  V  Q  A  A  F  A  V  V  N  K  G  V  R  P  T  I  P  T  D  C  L  P  V  L  A  E  I  M  T  C  C  W  D  G  N  P  D  N  R  P  P  F  S  Q  V  V  R  M  L  E  A  A  E  T  E  I  L  T  K  V  R  K  A  R  F  R  C  C  I  S  Q  P  M  T  T  D  *  Y  G  K  R  N  C  R  C  S  K  G  Q  E  *  R  I  W  K  G  *  A  E  V  I  P  K  S  G  M  C  I  Y  E  A  *  F  L  C  S  D  R  K  K  G  R  K  L  *  Q  G  T  V  *  F  C  V  V  S  S  F  D  F  L  F  F  L  N  L  R  F  *  L  V  I  I  E  E  Y  V  Y  V  Y  M  S  I  Y  G  C  V  L  F  Y  F  N  Q  I  L  P  G  V  H  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0032K07.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118632" stop="118387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNMTAVQAAFAVVNKGVRPTIPTDCLPVLAEIMTCCWDGNPDNRPPFSQVVRMLEAAETEILTKVRKARFRCCISQPMTTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 128 chains have been computed
$ 
$ memory statistics:
$ 436448 bytes spliced alignments in total
$ 38 spliced alignments have been stored
$ 11485 bytes was the average size of a spliced alignment
$ 19504 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1625 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:45:22
-->
