<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 14:27:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246117" ref_strand="+" ref_description="SGN-E246117 [cLEF-40-E6]">
      <seq>ggaatcaataaagagttttttggtcaagatttggtgatgggtgtgtttatttttgatgaaagactgtaaatttggaataaagagggagttttttttttctggggtggggagattttaagaaatggcaagtataacagaggttacaattctacatcatgtgtgcattgtgttgatagtaatatggttgcttaattccttcaattatggtcaccctttggtttatttcatctccctaatctatctttatctggttaatgagcagtatgtgactagattaaagaagaaattgcagtttgaggaaaaaagacagtcgaatcaacgacgagtgctttctgattctgaagacagtgaggtggttaaaccatgctcttgaaaagatttggcctgtatgcatggagaatatcgtttcacagaaaattctcctccctatcattccgtggtttatgcagaaatacaaaccctggactgtgaaagacattgcagtgcagtctctctacttaggaagaagcccacctatgttcacggaaatgagggttcttcgtgaatctactggagatgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="4174" stop="6552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4474" g_stop="4723" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4724" i_stop="4819" i_length="96">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4820" g_stop="4894" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="325" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4895" i_stop="5776" i_length="882">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5777" g_stop="5920" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="470" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5921" i_stop="6159" i_length="239">
            <donor d_prob="0.075" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6160" g_stop="6252" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="563" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E246117" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4474" e_stop="4723"/>
          <exon e_start="4820" e_stop="4894"/>
          <exon e_start="5777" e_stop="5920"/>
          <exon e_start="6160" e_stop="6252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTGGTATGTATTACAAGATTCTGTTTTTTTTTCTTCTGGTTTTTAAGGTTTTGTGGTCTTATGATGTTAATTTAGGCTTTTGTTTGTGTTTCTTTGAAGGTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGAGTGAGTATTTAGCAGCACAGTTTGTAGTATCTTTATGTATTTCTTGTGTTGTTTGATTTAACAGGTCCACAAAGAATATTGATGGACAAAAAGTATAAGAAATTCCAAGATTCAAAAAGTTGCTGAGAGAGATTTTATGGCTTTATTAGTGAAATATGGAGGATTCTGTTTTCTTGTAGTTGTTAAAAGTCCCAAGCTTTACATTTTGTTGAAGGGTCCCAGAATGTTCATTTTCTTTTGCACTATGATTCTTTATGCCAAATTAGGTTGAATAGTTAATTAGGTCTCATGAGTAGCATCTTTACACCAGAATCTGTACTACTTTACAAAAGTCATTAAAATGAACTTGTGGAGAAGTGATCAGATAGGACATGACAAACCTTCTGCTTACCAAGGACATGCTTACCGGAGGGGAGGTGGAGGATTCGGGTAGATGGGTAGTAGTAATAGTTTTGTATCTTGTTTTTCCTACTAGTAGTATTAGTATTATTTCTGGTATTTTTATTATTTTATTATTTCTGCATTTCTCGTTTTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCCTTGGTTTTCGTACTATCCTGCTGTTGTTTCTGCCTTTATTTCCATAAATGTTGTGTTTTTGCCTTATTGAGCCAAGGGTCTATTGGGAACAACCTCTCTACTTGCACAAGGTAGGGATAAGGATTGTACACCCATCCTCCCCATTACACTCGTTATTTTGTTGTTGTTGTTGTTGTTGTTAGATTATGCCAAGCAAATTAGATTTCTTAAGCTTGAATACTGATGATAATGGTAGTCACTTGCTATAGATGTGGTATTTGAGTCAATACATTTTTGTTAATTCTTATATCTTTTTTTTTTTTGGCTTTTCTCAGGTGCTTTCTGATTCTGAA-ACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTGGTAGGGATACTTATGTACCAATTACCGTTTAAATGTAAAATGGTTTTGGTTTTGATTTTGATTTTCCCCTCTACTATGTGCTTTGAATTATAGTTATTTTAGGTTTAATTGTTGGCTTCTGTATTAAATACATTAGTTGTTAATCATTGTAATATCATCAGCAATTTTCATAACTTCAGTATGAGGATTAATTTGTTCTGCAAGATAAGTTACTAGGATGCTTTTCTGTTAACCTACAGAAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCAC</genome_strand>
        <mrna_strand>GGAATCAATAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTG................................................................................................GTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCTGATTCTGAAGACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTG...............................................................................................................................................................................................................................................AAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249741" ref_strand="+" ref_description="SGN-E249741 [cLEF-57-E22]">
      <seq>gaatcaaaaaagagttttttggtcaagatttggtgatgggtgtgtttatttttgatgaaagactgtaaatttggaataaagagggagttttttttttctggggtggggagattttaagaaatggcaagtataacagaggttacaattctacatcatgtgtgcattgtgttgatagtaatatggttgcttaattccttcaattatggtcaccctttggtttatttcatctccctaatctatctttatctggttaatgagcagtatgtgactagattaaagaagaaattgcagtttgaggaaaaaagacagtcgaatcaacgacgagtgctttctgattctgaaacagtgaggtggttaaaccatgctcttgaaaagatttggcctgtatgcatggagaatatcgtttcacagaaaattctcctccctatcattccgtggtttatgcagaaatacaaaccctggactgtgaaagacattgcagtgcagtctctctacttaagaagaagcccacctatgttcacggaaatgaaggttcttcgtgaatctactggagatgatcaccttgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="4175" stop="6559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4475" g_stop="4723" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4724" i_stop="4819" i_length="96">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4820" g_stop="4894" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="324" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4895" i_stop="5776" i_length="882">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5777" g_stop="5920" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="468" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5921" i_stop="6159" i_length="239">
            <donor d_prob="0.075" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6160" g_stop="6255" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6256" i_stop="6344" i_length="89">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6345" g_stop="6350" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="570" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E249741" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4475" e_stop="4723"/>
          <exon e_start="4820" e_stop="4894"/>
          <exon e_start="5777" e_stop="5920"/>
          <exon e_start="6160" e_stop="6255"/>
          <exon e_start="6345" e_stop="6350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTGGTATGTATTACAAGATTCTGTTTTTTTTTCTTCTGGTTTTTAAGGTTTTGTGGTCTTATGATGTTAATTTAGGCTTTTGTTTGTGTTTCTTTGAAGGTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGAGTGAGTATTTAGCAGCACAGTTTGTAGTATCTTTATGTATTTCTTGTGTTGTTTGATTTAACAGGTCCACAAAGAATATTGATGGACAAAAAGTATAAGAAATTCCAAGATTCAAAAAGTTGCTGAGAGAGATTTTATGGCTTTATTAGTGAAATATGGAGGATTCTGTTTTCTTGTAGTTGTTAAAAGTCCCAAGCTTTACATTTTGTTGAAGGGTCCCAGAATGTTCATTTTCTTTTGCACTATGATTCTTTATGCCAAATTAGGTTGAATAGTTAATTAGGTCTCATGAGTAGCATCTTTACACCAGAATCTGTACTACTTTACAAAAGTCATTAAAATGAACTTGTGGAGAAGTGATCAGATAGGACATGACAAACCTTCTGCTTACCAAGGACATGCTTACCGGAGGGGAGGTGGAGGATTCGGGTAGATGGGTAGTAGTAATAGTTTTGTATCTTGTTTTTCCTACTAGTAGTATTAGTATTATTTCTGGTATTTTTATTATTTTATTATTTCTGCATTTCTCGTTTTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCCTTGGTTTTCGTACTATCCTGCTGTTGTTTCTGCCTTTATTTCCATAAATGTTGTGTTTTTGCCTTATTGAGCCAAGGGTCTATTGGGAACAACCTCTCTACTTGCACAAGGTAGGGATAAGGATTGTACACCCATCCTCCCCATTACACTCGTTATTTTGTTGTTGTTGTTGTTGTTGTTAGATTATGCCAAGCAAATTAGATTTCTTAAGCTTGAATACTGATGATAATGGTAGTCACTTGCTATAGATGTGGTATTTGAGTCAATACATTTTTGTTAATTCTTATATCTTTTTTTTTTTTGGCTTTTCTCAGGTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTGGTAGGGATACTTATGTACCAATTACCGTTTAAATGTAAAATGGTTTTGGTTTTGATTTTGATTTTCCCCTCTACTATGTGCTTTGAATTATAGTTATTTTAGGTTTAATTGTTGGCTTCTGTATTAAATACATTAGTTGTTAATCATTGTAATATCATCAGCAATTTTCATAACTTCAGTATGAGGATTAATTTGTTCTGCAAGATAAGTTACTAGGATGCTTTTCTGTTAACCTACAGAAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCACCTTGTATGTAATCCTGACTTAAGAAAGTTGTTCTATTCCATCAGTATGGTTCTGCTCGACTTTTGCTTATCTGCTAAGATATGTTGGTGCAGGTATTG</genome_strand>
        <mrna_strand>GAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTG................................................................................................GTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTG...............................................................................................................................................................................................................................................AAAGACATTGCAGTGCAGTCTCTCTACTTAAGAAGAAGCCCACCTATGTTCACGGAAATGAAGGTTCTTCGTGAATCTACTGGAGATGATCACCTT.........................................................................................GTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396208" ref_strand="+" ref_description="SGN-E396208 [TUS-24-N22]">
      <seq>agacacttgttgagcccaatatgctggtagtacacatggagaaatttgtttcaccccaacaagaggaaagctggttttctatcgatgcaaaggagcccattgcccatgttattttggaagtccttgaagcggaagacttaaagccagcagatttaaatggactctctgatccatatgttaaggggcatcttgggccctacagattcaagactaggactcagaagaagacattagctccacagtggcaagaggagttcaagattccagtctgttcatgggagtctcctaacgatatgctcaacatagatgtttgtgacagagaccatttttctgcggatgaaacattgggagattattccataaacatctgtgattatagggatggccagaggcatgatatatggttgtctcttcatagtgttaaaatggggagactacgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatccgagcaggcaaaaacggacatcaaacaggagagcaattctgatgagatggatacagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="7577" stop="10287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7618" g_stop="7631" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7632" i_stop="7887" i_length="256">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7888" g_stop="7936" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="63" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7937" i_stop="8291" i_length="355">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8292" g_stop="8387" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="159" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8388" i_stop="8458" i_length="71">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8459" g_stop="8648" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="349" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9494" g_stop="9617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="473" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9845" g_stop="9987" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="616" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E396208" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7618" e_stop="7631"/>
          <exon e_start="7888" e_stop="7936"/>
          <exon e_start="8292" e_stop="8387"/>
          <exon e_start="8459" e_stop="8648"/>
          <exon e_start="9494" e_stop="9617"/>
          <exon e_start="9845" e_stop="9987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACTTGTTGAGGTGCGGTTCCCATTGTCTTTTTTACTACATTCCTCCATCATGCTTGGAGTATTAAGTGTCTTTTGTTTTGACCTTGATCCTTTTATATAGTGATAAATGTTTCACATTAATACACTATCGGGTATCAACTCTCGGCCTTTTCTTTCACTTGCTCAAATGGTGTGCATAGTTCACCAACTGGTATTATGGTTACCAAAAGTCCTAATTAATGATTCGTAAGGAGCTTTTAGACTAAAGTCTGGATAACATTTTGCAGCCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAGGTAACAGTTACTCTAACCTGTCTCTCTCGCTCTCGCTCTCTCGTTGCTCAATATTATGAGGCCCAAATTAATAATGGATTATTGTGAATGATGTCCTAAACCACAACACATGAATGGATTTGAAATAATTTGTTATGTGGAGGTATTTAGTAGTGTAAATTGCAACATCAAATCTTTCGTGCGGAGAATTTTCAAGAATCCTCTTCATTCATTTTGTTTGTACTACGATAATTTATTTAGCGATTTGTTCATAGCTTGTTTGGATGGAAAATAAGGGAATAAGAGCTGGTTGGCTTCAGTTTGGGATGCATATTATTTCTGCTACTTAATTCGATATTGTTTGTTTTCTTTTCAGAGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATGGTTAGCCGGAAATCCTCTTACTGTAATCTATCTAACTAGGACATGCTAAATACCTGAGAGATCATTTTCAGGACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAAT</genome_strand>
        <mrna_strand>AGACACTTGTTGAG................................................................................................................................................................................................................................................................CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG...................................................................................................................................................................................................................................................................................................................................................................AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG.......................................................................GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAGTGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246744" ref_strand="+" ref_description="SGN-E246744 [cLEF-45-N9]">
      <seq>acttgttgagcccaatatgctggtagtacacatggagaaatttgtttcaccccaacaagaggaaagctggttttctatcgatgcaaaggagcccattgcccatgttattttggaagtccttgaagcggaagacttaaagccagcagatttaaatggactctctgatccatatgttaaggggcatcttgggccctacagattcaagactaggactcagaagaagacattagctccacagtggcaagaggagttcaagattccagtctgttcatgggagtctcctaacgatatgctcaacatagatgtttgtgacagagaccatttttctgcggatgaaacattgggagattattccataaacatctgtgattatagggatggccagaggcatgatatatggttgtctcttcataatgttaaaatggggagactacgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatccgagcaggcaaaaacggacatcaaacaggagagcaattctgatgagatggatacagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaattaacatagaagggcagaaggagactggcatgtgggtacaccaccctggcagtgaagtaccacaagtttgggaacagagaagggaaagattcgggttatcgatgggagagttcatggttctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="7580" stop="10415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7622" g_stop="7631" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7632" i_stop="7887" i_length="256">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7888" g_stop="7936" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="59" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7937" i_stop="8291" i_length="355">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8292" g_stop="8387" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="155" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8388" i_stop="8458" i_length="71">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8459" g_stop="8648" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="345" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9494" g_stop="9617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="469" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9845" g_stop="10115" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="739" r_length="270" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E246744" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7622" e_stop="7631"/>
          <exon e_start="7888" e_stop="7936"/>
          <exon e_start="8292" e_stop="8387"/>
          <exon e_start="8459" e_stop="8648"/>
          <exon e_start="9494" e_stop="9617"/>
          <exon e_start="9845" e_stop="10115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTGAGGTGCGGTTCCCATTGTCTTTTTTACTACATTCCTCCATCATGCTTGGAGTATTAAGTGTCTTTTGTTTTGACCTTGATCCTTTTATATAGTGATAAATGTTTCACATTAATACACTATCGGGTATCAACTCTCGGCCTTTTCTTTCACTTGCTCAAATGGTGTGCATAGTTCACCAACTGGTATTATGGTTACCAAAAGTCCTAATTAATGATTCGTAAGGAGCTTTTAGACTAAAGTCTGGATAACATTTTGCAGCCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAGGTAACAGTTACTCTAACCTGTCTCTCTCGCTCTCGCTCTCTCGTTGCTCAATATTATGAGGCCCAAATTAATAATGGATTATTGTGAATGATGTCCTAAACCACAACACATGAATGGATTTGAAATAATTTGTTATGTGGAGGTATTTAGTAGTGTAAATTGCAACATCAAATCTTTCGTGCGGAGAATTTTCAAGAATCCTCTTCATTCATTTTGTTTGTACTACGATAATTTATTTAGCGATTTGTTCATAGCTTGTTTGGATGGAAAATAAGGGAATAAGAGCTGGTTGGCTTCAGTTTGGGATGCATATTATTTCTGCTACTTAATTCGATATTGTTTGTTTTCTTTTCAGAGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATGGTTAGCCGGAAATCCTCTTACTGTAATCTATCTAACTAGGACATGCTAAATACCTGAGAGATCATTTTCAGGACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTG</genome_strand>
        <mrna_strand>ACTTGTTGAG................................................................................................................................................................................................................................................................CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG...................................................................................................................................................................................................................................................................................................................................................................AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG.......................................................................GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAG-AAGGGAAAGATTCGGGTTATCGATGGGAGAGTTCATGGTTCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597406" ref_strand="+" ref_description="SGN-E597406 [40909]">
      <seq>aaatgtttcacattaatacactctcgggtatcaactctcggccttctctttcacttgctcaaatggtgtgcatggttcaccaactgcccaacatgctggtagttgatatggagaaatttgtctcaccccaacaagacgaaaactggttttctatcgatgccaaggagcccattgcccatgttattttggaagtccttgaagcagaagacttgaaaccagcagatttaaatggactgtctgatccatatgttaaggggcatcttgggccctacagattcaagactaggactcagaagaagacattagctccacagtggcaagaggagttcaagattccagtctgttcatgggagtctcctaacgatatgctcaacatagacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="7426" stop="8909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7726" g_stop="7811" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7812" i_stop="7887" i_length="76">
            <donor d_prob="0.454" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7888" g_stop="7936" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="135" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7937" i_stop="8291" i_length="355">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8292" g_stop="8387" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="231" r_length="96" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8388" i_stop="8458" i_length="71">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.533" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8459" g_stop="8609" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="382" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E597406" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7726" e_stop="7811"/>
          <exon e_start="7888" e_stop="7936"/>
          <exon e_start="8292" e_stop="8387"/>
          <exon e_start="8459" e_stop="8609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTCACATTAATACACTATCGGGTATCAACTCTCGGCCTTTTCTTTCACTTGCTCAAATGGTGTGCATAGTTCACCAACTGGTATTATGGTTACCAAAAGTCCTAATTAATGATTCGTAAGGAGCTTTTAGACTAAAGTCTGGATAACATTTTGCAGCCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAGGTAACAGTTACTCTAACCTGTCTCTCTCGCTCTCGCTCTCTCGTTGCTCAATATTATGAGGCCCAAATTAATAATGGATTATTGTGAATGATGTCCTAAACCACAACACATGAATGGATTTGAAATAATTTGTTATGTGGAGGTATTTAGTAGTGTAAATTGCAACATCAAATCTTTCGTGCGGAGAATTTTCAAGAATCCTCTTCATTCATTTTGTTTGTACTACGATAATTTATTTAGCGATTTGTTCATAGCTTGTTTGGATGGAAAATAAGGGAATAAGAGCTGGTTGGCTTCAGTTTGGGATGCATATTATTTCTGCTACTTAATTCGATATTGTTTGTTTTCTTTTCAGAGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATGGTTAGCCGGAAATCCTCTTACTGTAATCTATCTAACTAGGACATGCTAAATACCTGAGAGATCATTTTCAGGACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGT</genome_strand>
        <mrna_strand>AAATGTTTCACATTAATACACTCTCGGGTATCAACTCTCGGCCTTCTCTTTCACTTGCTCAAATGGTGTGCATGGTTCACCAACTG............................................................................CCCAACATGCTGGTAGTTGATATGGAGAAATTTGTCTCACCCCAACAAG...................................................................................................................................................................................................................................................................................................................................................................ACGAAAACTGGTTTTCTATCGATGCCAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCAGAAGACTTGAAACCAGCAGATTTAAATG.......................................................................GACTGTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252720" ref_strand="+" ref_description="SGN-E252720 [cLEG-16-M6]">
      <seq>gtgtttgtgacagagaccatttttctgcggatgaaaccattgggagattattccataaacatctgtgattatagggatggccagaggcatgatatatggttgtctcttcataatgttaaaatggggagacctaccgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatccgagcaggcaaaaacggacatcaaacaggagagcaattctgatgagatggataccagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaattaacatagaagggcagaaggagactggcatgtgggtaccaccaccctggcagtgaagtaccacaagtttgggaacagagaaagggaaagagtcgggttatcgatggagaagttcatggttctgatgctgattccatgggaggaagtttcaagttaagagggggaggatctactcggggtgatgattctgatgaaggcagtggatctaagaagtcgaatctaattaacaggggtataaataagatcgggtccttcttccacaaaagtcagaaaagcgaggacaggtctataaatcttggagatcctgttccatctccgcaagctaatctaaaggcagtgagtgcaaaggggatcggtgtgaatcttattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="8307" stop="10657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8606" g_stop="8648" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845">
            <donor d_prob="0.971" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9494" g_stop="9617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="170" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227">
            <donor d_prob="0.911" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9845" g_stop="10357" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="685" r_length="515" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E252720" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8606" e_stop="8648"/>
          <exon e_start="9494" e_stop="9617"/>
          <exon e_start="9845" e_stop="10357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAA-CATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGA-CTA-CGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATA-CAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTA-CACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATG</genome_strand>
        <mrna_strand>GTGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACCATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACCTACCGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACCAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACCACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252719" ref_strand="+" ref_description="SGN-E252719 [cLEG-16-M2]">
      <seq>gtgtttgtgacaaaaaccatgtttctgcggatgaaacattgggagattatcccatgaacatctgtgattatagggatggccagaggcatgatatatggttgactcttcataatgttaaaatggggagactacgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatcctggcaggcaaaaacggacatcagacaggagagcaattctgatgagatggatacagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaattaacatacaaaggcagaacgagactggcatgtgggtacaccaccctggcggtgaagtaccacaagcttgggaacagagaaagggaaagagtcgggttatcgatggagaagttcatggttctgatgctgattccatgggaagaagtttcaagttaagagggggaggatctactcggggtgatgattctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="8307" stop="10480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8606" g_stop="8648" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845">
            <donor d_prob="0.971" d_score="0.91"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9494" g_stop="9617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="167" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9845" g_stop="10180" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="503" r_length="336" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E252719" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8606" e_stop="8648"/>
          <exon e_start="9494" e_stop="9617"/>
          <exon e_start="9845" e_stop="10180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAA</genome_strand>
        <mrna_strand>GTGTTTGTGACAAAAACCATGTTTCTGCGGATGAAACATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATCCCATGAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGACTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCTGGCAGGCAAAAACGGACATCAGACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATACAAAGGCAGAACGAGACTGGCATGTGGGTACACCACCCTGGCGGTGAAGTACCACAAGCTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAAGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253081" ref_strand="+" ref_description="SGN-E253081 [cLEG-25-O12]">
      <seq>accatttttctgcggatgaaacattgggagattataccgtaaacatctgtgagtatagggatggccataggcatgatatatggctgtctcttcataatgttaaaatggggagactacgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatccgagcaggcaaaaacggacatcaaacaggagagcaattctgatgagatggatacagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaattaacatagaagggcagaaggagactggcatgtgggtacaccaccctggcagtgaagtaccacaagtttgggaacagagaaagggaaagagtcgggttatcgatggagaagttcatggttctgatgctgattccatgggaggaagtttcaagttaagagggggaggatctactcggggtgatgattctgatgaaggcagtggatctaagaagtcgaatctaattaacaggggtataaataagatcgggtccttcttccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="8321" stop="10549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8621" g_stop="8648" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9494" g_stop="9617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="152" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9845" g_stop="10249" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="557" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E253081" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8621" e_stop="8648"/>
          <exon e_start="9494" e_stop="9617"/>
          <exon e_start="9845" e_stop="10249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTTTCTGCGGATGAAACATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAA</genome_strand>
        <mrna_strand>ACCATTTTTCTGCGGATGAAACATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATACCGTAAACATCTGTGAGTATAGGGATGGCCATAGGCATGATATATGGCTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396207" ref_strand="+" ref_description="SGN-E396207 [TUS-24-N22](-)">
      <seq>gatgaaggcagtggatttaagaagtcgaatctaattaacaggggtataaataagatcgggtccttcttccacaaaagtcagaaaagcgaggacaggtctataaatcttggagatcctgttccatctccgcaagctaatctaaaggcagtgagtgcaaaggggatcggtgtgaatcttattatgaacgattcagtggaaacaactccccgagatgatagtaaagaggctcatgagggaaatgttcaatgtagtagctccaacaagagtagagtccgtgacaaggcgaagaatatcctaagacatgtatctcggaagtcatcacgaaaatctaaaggtgagttagaaccaacagcatcagagagagatctatctgtggaatctgactcctccgacgattttactcccttagttggttcacctctaggccgttcagtgagcggtcgtttcatagccagcactggcactgagaatcccaatggcaacacattgaagagtagtgaattggtaagtgataagggaaacatgaaaactagtgaggaattagttcatgataaagctatgaattcagtaagtccaaaagtttctaatctttgaatatgtttgttgtacattttctttaatgcagagttactgttataccttttacttgtacatgaatatatgtaatgtaatagtttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="9875" stop="11155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10175" g_stop="10854" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="694"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E396207" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10175" e_stop="10854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCAT</genome_strand>
        <mrna_strand>GATGAAGGCAGTGGATTTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245230" ref_strand="+" ref_description="SGN-E245230 [cLEF-44-D5]">
      <seq>ttttttttcacagaaaaagtattgcatacttttatacaaatcatacgggctttgctcaaaggggacaatgtcgcaccatgtcagaagtttcactaacatgtacaaacagaagccaatatgaaactattacattacatatattcatgtacaagtaaaaggtataacagtaactctgcattaaagaaaatgtacaacaaacatattcaaagattagaaacttttggacttactgaattcatagctttatcatgaactaattcctcactagttttcatgtttcccttatcacttaccaattcactactcttcaatgtgttgccattgggattctcagtgccagtgctggctatgaaacgaccgctcactgaacggcctagaggtgaaccaactaagggagtaaaatcgtcggaggagtcagattccacagatagatctctctctgatgctgttggttctaactcacctttagattttcgtgatgacttccgagatacatgtcttaggatattcttcgccttgtcacggactctactcttgttggagctactacattgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="11265" stop="10113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10971" g_stop="10413" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E245230" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10971" e_stop="10413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATACACAGAAAAAGTATTGCATACTTTTATACAAATCATACGGGCTTTGCTCAAAGCAGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATGCTGTTGGTTCTAACTCACCTTTAGATTTTCGTGATGACTTCCGAGATACATGTCTTAGGATATTCTTCGCCTTGTCACGGACTCTACTCTTGTTGGAGCTACTACATTGAACAT</genome_strand>
        <mrna_strand>TTTTTTTTCACAGAAAAAGTATTGCATACTTTTATACAAATCATACGGGCTTTGCTCAAAGGGGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATGCTGTTGGTTCTAACTCACCTTTAGATTTTCGTGATGACTTCCGAGATACATGTCTTAGGATATTCTTCGCCTTGTCACGGACTCTACTCTTGTTGGAGCTACTACATTGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248246" ref_strand="+" ref_description="SGN-E248246 [cLEF-55-K5]">
      <seq>acagaaaaagtattgcatacttttatacaaatgagacgggctttgctcaaagcagacaatgtcgcaccatgtcagaagtttcactaacatgtacaaacagaagccaatatgaaactattacattacatatattcatgtacaagtaaaaggtataacagtaactctgcattaaagaaaatgtacaacaaacatattcaaagattagaaacttttggacttactgaattcatagctttatcatgaactaattcctcactagttttcatgtttcccttatcacttaccaattcactactcttcaatgtgttgccattgggattctcagtgccagtgctggctatgaaacgaccgctcactgaacggcctagaggtgaaccaactaagggagtaaaatcgtcggaggagtcagattccacagatagatctctctctgatgctgttggttctaactcacctttagattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="11262" stop="10197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10962" g_stop="10497" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E248246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10962" e_stop="10497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAAAAGTATTGCATACTTTTATACAAATCATACGGGCTTTGCTCAAAGCAGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATGCTGTTGGTTCTAACTCACCTTTAGATTTTC</genome_strand>
        <mrna_strand>ACAGAAAAAGTATTGCATACTTTTATACAAATGAGACGGGCTTTGCTCAAAGCAGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATGCTGTTGGTTCTAACTCACCTTTAGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397846" ref_strand="+" ref_description="SGN-E397846 [TUS-34-M5]">
      <seq>ttttccgaagccttattattgcatacttttatacaaatcatacgggctttgctcacagcagacaatgtcgcaccatgtcaaaattttcactaacatgtacaaacagaagccaatatgaaactattacattacatatattcatgtacaagtaaaaggtataacagtaactctgcattaaagaaaatgtacaacaaacatattcaaagattagaaacttttggacttactgaattcatagctttatcatgaactaattcctcactagttttcatgtttcccttatcacttaccaattcactactcttctatgtgttgccattgggattctcagtgccagtgctggctatgaaacgaccgctcactgaacggcctaaaggtgaaccaactaagggagtaaaatcgtcggaggagtcaaaatccacggatagatctctctctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="11254" stop="10227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10952" g_stop="10527" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="442" r_length="426" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E397846" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10952" e_stop="10527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCATACTTTTATACAAATCATACGGGCTTTGCTCAAAGCAGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATG</genome_strand>
        <mrna_strand>TATTGCATACTTTTATACAAATCATACGGGCTTTGCTCACAGCAGACAATGTCGCACCATGTCAAAATTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCTATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAAAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAAAATCCACGGATAGATCTCTCTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553938" ref_strand="+" ref_description="SGN-E553938 [cTSC-2-L14]">
      <seq>ctaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtactttttcccttagaggaaaatgatcacaattcatcagctttaacaacacaagcctaagtcgaaacttcaatatggacttcggaaattaaaaaaaaaaacacaaggctaaagtttgtgccaaaaaattataacttctattgtaattgattagctagaggtaaattgtacttgaattagatgtattagtgaggaggaactcaataaaataacaacgcgtatcatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14253" stop="13215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13953" g_stop="13515" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E553938" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13953" e_stop="13515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTAC-TTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAA-ACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</genome_strand>
        <mrna_strand>CTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACGCGTATCATGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551744" ref_strand="+" ref_description="SGN-E551744 [cTSB-1-L14]">
      <seq>ctaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtactttttcccttagaggaaaatgatcacaattcatcagctttaacaacacaagcctaagtcgaaacttcaatatggacttcggaaattaaaaaaaaaaacacaaggctaaagtttgtgccaaaaaattataacttctattgtaattgattagctagaggtaaattgtacttgaattagatgtattagtgaggaggaactcaataaaataacaacacgtatcatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14253" stop="13215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13953" g_stop="13515" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E551744" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13953" e_stop="13515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTAC-TTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAA-ACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</genome_strand>
        <mrna_strand>CTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396116" ref_strand="+" ref_description="SGN-E396116 [TUS-19-K19](-)">
      <seq>ggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtacttttcccttagaggaaaatgatcacaattcatcagctttaacaacacaaaattaagttgaaaatacaatatggacttcggaaattaaaaaaaaaacacaaggctaaagtttgtgccaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14235" stop="13317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13935" g_stop="13617" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E396116" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13935" e_stop="13617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAAT</genome_strand>
        <mrna_strand>GGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAAATTAAGTTGAAAATACAATATGGACTTCGGAAATTAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396117" ref_strand="+" ref_description="SGN-E396117 [TUS-19-K19]">
      <seq>ttttttgtgtgtgtatcaaacaatactatggcaactttggtacctgaggttgagaatagggcatgtatcaatgggtgcaataatgatttgaccaattttgatcactctcaaatagattgctcccttctcatgtcattgcttgatgactcgcaaggcgtagacgatattgatcatgataacgagagattatcgagtgtgattagatctctcgaggctgaaattgatgatcatcacctgataaacgttgatcacgattcatttcagaatactcatcaaaggagtactaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaaagatcatgatgtgtatgaatatggttatggtacttttcccttagaggaaaatgatcacaattcatcagcttttaacaacacaagcctaagtcgaaactttcatatggacttcggaattaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14536" stop="13343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14236" g_stop="13643" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E396117" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14236" e_stop="13643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGAC-AAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGC-TTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAACA</genome_strand>
        <mrna_strand>TTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTTAACAACACAAGCCTAAGTCGAAACTTTCATATGGACTTCGGAATTAAAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231667" ref_strand="+" ref_description="SGN-E231667 [cLED-4-E14]">
      <seq>tttttgtgtgtgtatcaaacaatactatggcaactttggtacctgaggttgagaatagggcatgtatcaatgggtgcaataatgatttgaccaattttgatcactctcaaatagattgctcccttctcatgtcattgcttgatgactcgcaaggcgtagacgatattgatcatgataacgagagattatcgagtgtgattagatctctcgaggctgaaattgatgatcatcacctgataaacgttgatcacgattcatttcagaatactcatcaaaggagtactaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtacttttcccttagaggaaaatgatcacaattcatcagctttaacaacacatgcctaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14535" stop="13382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14235" g_stop="13682" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E231667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14235" e_stop="13682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTC</genome_strand>
        <mrna_strand>TTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACATGCCTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341817" ref_strand="+" ref_description="SGN-E341817 [cTOF-9-O16]">
      <seq>gtagttcaagtgtttgtaccttttttgtgtgtgtatcaaacaatactatggcaactttggtacctgaggttgagaatagggcatgtatcaatgggtgcaataatgatttgaccaattttgatcactctcaaatagattgctcccttctcatgtcattgcttgatgactcgcaaggcgtagacgatattgatcatgataacgagagattatcgagtgtgattagatctctcgaggctgaaattgatgatcatcacctgataaacgttgatcacgattcatttcagaatactcatcaaaggagtactaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtactttttccttagaggaaaatgatcacaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14555" stop="13409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14255" g_stop="13709" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E341817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14255" e_stop="13709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCAAGTGTTTGTA-CTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCA</genome_strand>
        <mrna_strand>GTAGTTCAAGTGTTTGTACCTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTTCCTTAGAGGAAAATGATCACAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395872" ref_strand="+" ref_description="SGN-E395872 [TUS-18-K19]">
      <seq>ttttttgtgtgtgtctcttacaatactatggcaactttggtacctgaggttgagaatagggcatgtatcaatgggtgcaataatgatttgaccaattttgatcactctcaaatagattgctcccttctcatgtcattgcttgatgactcgcaaggcgtagacgatattgatcatgataacgagagattatcgagtgtgattagatctctcgaggctgaaattgatgatcatcacctgataaacgttgatcacgattcatttcagaatactcatcaaaggagtactaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatacagatggatattgctccttttattatgagggggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="14536" stop="13525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14236" g_stop="13828" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E395872" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14236" e_stop="13828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTA</genome_strand>
        <mrna_strand>TTTTTTGTGTGTGTCTCTTACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATACAGATGGATATTGCTCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24169" stop="25481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24469" g_stop="25181" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24469" e_stop="25181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24169" stop="25364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24469" g_stop="25064" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24469" e_stop="25064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24169" stop="25294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24469" g_stop="24994" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24469" e_stop="24994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24240" stop="25518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="25219" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="25219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24240" stop="25198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="24898" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="24898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24758" stop="26119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25058" g_stop="25819" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25058" e_stop="25819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAAGAAGGTCTGCAGGAAACACATCTAAAAATTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAGACAACCCTTACTAACCATTTTCTTAACACGAAGAAAGGAGACAATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGA-GCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATCCGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="24758" stop="26018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25058" g_stop="25718" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25058" e_stop="25718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAAGAAGGTCTGCAGGAAACACATCTAAAAATTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAGACAACCCTTACTAACCATTTTCTTAACACGAAGAAAGGAGACAATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="25161" stop="26091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25461" g_stop="25791" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25461" e_stop="25791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="26125" stop="27444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26425" g_stop="27144" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26425" e_stop="27144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTTTAGGCTCAAGAACTCATCTCTTTTCCTGTCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAATATCATAAGCATCCTCAGATTCAGCACCTTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAACCCCTCATTCTATACTTGTTCATTCTCCTCTTCCTCACCCTCTCT-TAACACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="26128" stop="27347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26428" g_stop="27044" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26428" e_stop="27044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTTTAGGCTCAAGAACTCATCTCTTTTCCTGTCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAATATCATAAGCATCCTCAGATTCAGCACCTTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTG</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="27448" stop="26295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27148" g_stop="26595" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27148" e_stop="26595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGTTAAGAGAGGGTGAGGAAGAGGAGAATGAACAAGTATAGAATGAGGGGTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719011" ref_strand="+" ref_description="SGN-E719011 [FC06CA06]">
      <seq>aatcggccgaattgatagctcccaaatcccgttatggcaacggaaattggtcggattcgattaatactcagatgacaatctcagagctttctcaacaactcaaaattcccttaaattcttccgaaaaattcagtctcacttctcctccttcagcctcaacaaaaatggagtctttaccaaaaatccaacaaccccataagcgttattggcgttttagcaaacaagatttcttccccgaaccgtcttttcacaattttggatcctacaaaaatgccctttctcaaaccccaaatcgtctcaagaatcgtcttttttcacgttcatcagataccagtgaattgattgagcttaagaaagaatcggaaaatgaaatgaaattatgtttgacttggtgggatttaatttggctgggatttggatctgttgttggttcagggatttttagcattacgggtcaagaaacccgaaatgatgctggacctgctattgttctttcgtatgcaagttcgggtttatctgctttgctttctgtgttttgttatacagaattttctgttgatattcctgttgctggggggtctttttcgtttttgagaattgaattgggtgattttgttgcatttatagctgctgctaatattctattagaggctatggtgggtgctgctgggttaggacgttcatggtcgtcttattttgctagtattattaataataacccggattttttgaggatcaagattgattcttttgtagaagggtttaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="49644" stop="51005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49941" g_stop="50705" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="770" r_length="764" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E719011" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49941" e_stop="50705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCATAGCTCCACAAATCTTGGAATTCCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTTGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAATTTCTGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGTGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</genome_strand>
        <mrna_strand>CCGAATTGATAGCTCC-CAAATCCCGTTATGGCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTGGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAAGTTCGGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGGGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548687" ref_strand="+" ref_description="SGN-E548687 [TUS-63-I2](-)">
      <seq>gggggtgatgttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctctggatgtgctttacatgtttcttgttgctctcagagtgcatcatttacgtacccggtctttaactatacgaactcaaccatggttgagtgcgatattgacgtgaggtaagtgtatgtagaagacgtgtattatgcatttattgatttgatatatagaactcgagtgatgaaatgtgattgcaatcttcaataaccccacaaagaagtcttggttattaaatgggtatgcagtttgggtccaagctcctaccacaaacctaagttttaagattcgcctatcacaataaatatttttagtaaggacgataaatattttgagacggaaaaacttttgcccaaagtcattttactttttaggtgatgaatgtaaataaaatgtttggactccaaaaaggaaaaataggaaagaagaccagtattttagtgaatatgtataatgtacccttaataattaatttcattttggtataaaaccanaaatactatttgaaccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72240" stop="64026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71940" g_stop="71911" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="140" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="185" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67903" g_stop="67831" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="258" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67752" g_stop="67710" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="301" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67709" i_stop="64828" i_length="2882">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64827" g_stop="64325" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="806" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="821"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E548687" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71940" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67831"/>
          <exon e_start="67752" e_stop="67710"/>
          <exon e_start="64827" e_stop="64325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGAATCTCTTGATGGTTGGGGACGCCAGTGCACAATTCATTTGATCATTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGA-CAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCA-AAATACTATTTGAACCATAC</genome_strand>
        <mrna_strand>GGGGGTGAT-GTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGACCAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCANAAATACTATTTGAACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215357" ref_strand="+" ref_description="SGN-E215357 [cLEL-20-A5](-)">
      <seq>gcattgcttttgttgagtttgtaatggctaagagtgcaattttggctttagactgttgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccnctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttcctttctttactgcctacagtaacttatgctaccagaaaacaacgtagccatcgagccaacgatttttaaattggaatttccgcacttgtactacttttaccttgatcgatcgttcctctatgaatctcttgatgttcctctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="67353" stop="64571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67053" g_stop="67028" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="88" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65210" g_stop="64872" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="428" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E215357" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67053" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCC-CTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</genome_strand>
        <mrna_strand>GCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCNCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218012" ref_strand="+" ref_description="SGN-E218012 [cLEL-23-J15](-)">
      <seq>gcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttacggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttcctttctttactgcctacagtaacttatgctaccagaaaacaacgtagccatcgagccaacgatttttaaattggaatttccgcacttgtactacttttaccttgatcgatcgttcctctatgaatctcttgatgttcctctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="67348" stop="64571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67048" g_stop="67028" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="83" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65210" g_stop="64872" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="422" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="438"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E218012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67048" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</genome_strand>
        <mrna_strand>GCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTACGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218088" ref_strand="+" ref_description="SGN-E218088 [cLEL-23-J15](-)">
      <seq>gtgcaattttggctttagactgttgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgcacatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttcctttctttactgcctacagtaacttatgctaccagaaaacaacgtagccatcgagccaacgatttttaaattggaatttccgcacttgtactacttttaccttgatcgatcgttcctctatgaatctcttgatgttcctctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="66455" stop="64571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66155" g_stop="66101" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65210" g_stop="64872" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="395" r_length="340" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="411"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E218088" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66155" e_stop="66101"/>
          <exon e_start="65210" e_stop="64872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGC-CATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</genome_strand>
        <mrna_strand>GTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCACATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403262" ref_strand="+" ref_description="SGN-E403262 [PPC-10-I3]">
      <seq>tcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccaacgcatcagggtgagtccctcaaaaacaccagtgaggccccgatttccgcgtgccatgatgcagtaaaccaatgtgtatgctcatgggcctggaaagagttcagagacaacccccctcggaagacttgaggtcaccatgggaaatcgaaacaaaattctgtttcagtaatctccatgttctttcttttcatgttcctttctttcctgcctacagtaacttattgctaccaaaaacaacgtagccatcgagccaacgaacttttttaattggaatttccgcacttttagtacttttaccttgatcgatcgttcctctatgaatctcttgctggttggaacgccagttcacaatttgatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="67391" stop="64581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67091" g_stop="67028" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="126" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65210" g_stop="64886" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="445" r_length="319" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E403262" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67091" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTA-TGCTACCAGAAAACAACGTAGCCATCGAGCCAACG-A-TTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTG</genome_strand>
        <mrna_strand>TCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAACGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGATTTCCGCGTGCCATGATGCAGTAAACCAATGTGTATGCTCATGGGCCT-G-GAAAGAGTTCAGAGAC---AACCCCCCTCGGAAGACTTGAGGTCACCATGGG--AAATCGAAAC-AAAATTCTGTTTCAGTAATCTCCATGTTCTTTCTTTTCATGTTCCTTTCTTTCCTGCCTACAGTAACTTATTGCTACCA-AAAACAACGTAGCCATCGAGCCAACGAACTTTTTTAATTGGAATTTCCGCACTTTTAGTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433420" ref_strand="+" ref_description="SGN-E433420 [STM-58-O14]">
      <seq>tcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccaacgcatcagggtgagtccctcaaaaacaccagtgaggccccgatttccgcgtgccatgatgcagtaaaccaatgtgtatgctcatgggcctggaaagagttcagagacaacccccctcggaagacttgaggtcaccatgggaaatcgaaacaaaattctgtttcagtaatctccatgttctttcttttcatgttcctttctttcctgcctacagtaacttattgctaccaaaaacaacgtagccatcgagccaacgaacttttttaattggaatttccgcacttttagtacttttaccttgatcgatcgttcctctatgaatctcttgctggttggaacgccagttcacaatttgatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="67391" stop="64581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67091" g_stop="67028" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="126" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65210" g_stop="64886" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="445" r_length="319" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E433420" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67091" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTA-TGCTACCAGAAAACAACGTAGCCATCGAGCCAACG-A-TTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTG</genome_strand>
        <mrna_strand>TCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAACGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGATTTCCGCGTGCCATGATGCAGTAAACCAATGTGTATGCTCATGGGCCT-G-GAAAGAGTTCAGAGAC---AACCCCCCTCGGAAGACTTGAGGTCACCATGGG--AAATCGAAAC-AAAATTCTGTTTCAGTAATCTCCATGTTCTTTCTTTTCATGTTCCTTTCTTTCCTGCCTACAGTAACTTATTGCTACCA-AAAACAACGTAGCCATCGAGCCAACGAACTTTTTTAATTGGAATTTCCGCACTTTTAGTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617187" ref_strand="+" ref_description="SGN-E617187 [90662]">
      <seq>ctgagatagataacaatgtcactgaggagcagcttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattcccgtcttcgttttgctttcgtggagttcgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgagatgtgtgccaggacagtctattgtacaaatattgataagaaggttactcaggctgatgtcaagaatttttttgaaacaagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccaacgcatcagggtgagtccctcaaaaacaccagtgaggccccgatttccgcgtgccatgatgcagtaaaccaatgtgtatgctcatgggcctggaaagagttcagagacaacccccctcggaagacttgaggtcaccatgggaaatcgaaacaaaattctgtttcagtaatctccatgttctttcttttcatgttcctttctttccttgcctacagtaacttatttggtacccaaaaacaacgtaaccatcgagcccacgaacttttttaattggaatttccgcacttttagtaccttttaccttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="70266" stop="64612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70067" g_stop="70051" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="62" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67903" g_stop="67831" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="135" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78">
            <donor d_prob="0.306" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67752" g_stop="67640" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="248" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67454" g_stop="67395" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="308" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="356" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="425" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="487" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65210" g_stop="64930" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="765" r_length="278" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E617187" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70067" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67831"/>
          <exon e_start="67752" e_stop="67640"/>
          <exon e_start="67454" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTAC-TGCCTACAGTAACTTA--TGCTACCAGAAAACAACGTAGCCATCGAGCCAACG-A-TTTTTAAATTGGAATTTCCGCACTT</genome_strand>
        <mrna_strand>CTGAGATAGATAACAAT......................................................................................GTCACTGAGGAGCAGCTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCCCGTCTTCGTTTTGCTTTCGTGGAGTTCGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACAAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAACGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGATTTCCGCGTGCCATGATGCAGTAAACCAATGTGTATGCTCATGGGCCT-G-GAAAGAGTTCAGAGAC---AACCCCCCTCGGAAGACTTGAGGTCACCATGGG--AAATCGAAAC-AAAATTCTGTTTCAGTAATCTCCATGTTCTTTCTTTTCATGTTCCTTTCTTTCCTTGCCTACAGTAACTTATTTGGTACCCAAAAACAACGTAACCATCGAGCCCACGAACTTTTTTAATTGGAATTTCCGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611422" ref_strand="+" ref_description="SGN-E611422 [61173]">
      <seq>gccaggacagtctattgtacaaatattgataagaaggttactcaggctgatgtgaagaatttttttgaaacaagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttaaactgttgcggtgaggtattgggatcccaacgcatcagggtgagtccctcaaaaacaccagtgaggccccgatttccacgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggaaagagttcagagacaacccccttcggaagacttgaggccaccatgggaaatcgaaacaaaattctgtttcagtaatctctgtgttctttcttttcatgttcctttctttcctgcctacagtaacttattgctaccaaaaacaacgtaccatcgagccaacgaacttttttaattggaatttccgcacttttagtaaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="67730" stop="64624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67430" g_stop="67395" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="84" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="153" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="215" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65210" g_stop="64930" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="489" r_length="274" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="506"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E611422" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67430" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTA-TGCTACCAGAAAACAACGTAGCCATCGAGCCAACG-A-TTTTTAAATTGGAATTTCCGCACTT</genome_strand>
        <mrna_strand>GCCAGGACAGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTGAAGAATTTTTTTGAAACAAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAAACTGTTGCGGTGAGGTATTGGGATCCCAACGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGATTTCCACGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCT-G-GAAAGAGTTCAGAGAC---AACCCCCTTCGGAAGACTTGAGGCCACCATGGG--AAATCGAAAC-AAAATTCTGTTTCAGTAATCTCTGTGTTCTTTCTTTTCATGTTCCTTTCTTTCCTGCCTACAGTAACTTATTGCTACCA-AAAACAACGTA-CCATCGAGCCAACGAACTTTTTTAATTGGAATTTCCGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428508" ref_strand="-" ref_description="SGN-E428508 [STM-50-O18]">
      <seq>gtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgagatgtgtgccaggacagtctattgtacaaatattgataagaaggttactcaggctgatgtgaagaatttttttgaaacaagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccaacgcatcagggtgagtccctcaaaaacaccagtgaggccccgatttccgcgtgccatgatgcagtaagccaatgtgtgcgctcatggacctggaaagagttcagagacaacccccttcggaaatcttgaggccaccatgggaaatcgaaacaaaattctgtttcagtaatctctgtgttctttcttttcatgttcctttctttcctgcctacagggactaaaagctaccaaaaacaacngtagccatcgagccaaacgaacttttctcaattgtaattgttacacttttagtaaaaaaacaacaaagtaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="68025" stop="64650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67725" g_stop="67640" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67454" g_stop="67395" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="146" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="194" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="263" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="325" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65210" g_stop="64958" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="571" r_length="246" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E428508" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67725" e_stop="67640"/>
          <exon e_start="67454" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="64958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACT-TATGCTACCAGAAAACAAC-GTAGCCATCGAGCCAA</genome_strand>
        <mrna_strand>GTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAGATGTGTGCCAGGACAGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTGAAGAATTTTTTTGAAACAAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAACGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGATTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGCGCTCATGGACCT-G-GAAAGAGTTCAGAGAC---AACCCCCTTCGGAAATCTTGAGGCCACCATGGG--AAATCGAAAC-AAAATTCTGTTTCAGTAATCTCTGTGTTCTTTCTTTTCATGTTCCTTTCTTTCCTGCCTACAGGGACTAAAAGCTACCA-AAAACAACNGTAGCCATCGAGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703425" ref_strand="+" ref_description="SGN-E703425 [FA21BH02]">
      <seq>ctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgaaatgtgtgccaggactgtctattgtacaaatattgataagaaggttactcaggctgatgtcaagaatttttttgaaaccagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttccctttcttactgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72273" stop="64701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71973" g_stop="71911" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="174" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="219" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67903" g_stop="67831" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="292" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67752" g_stop="67640" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="405" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67454" g_stop="67395" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="465" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="513" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="582" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="644" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65210" g_stop="65001" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="854" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E703425" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71973" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67831"/>
          <exon e_start="67752" e_stop="67640"/>
          <exon e_start="67454" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="65001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTA</genome_strand>
        <mrna_strand>CTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCCTTTCTTACTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728114" ref_strand="+" ref_description="SGN-E728114 [LA16DA04]">
      <seq>gccactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgaaatgtgtgccaggactgtctattgtacaaatattgataagaaggttactcaggctgatgtcaagaatttttttgaaaccagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttcctttctttactgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="70454" stop="64701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70154" g_stop="70051" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="149" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67903" g_stop="67831" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="222" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67752" g_stop="67640" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="335" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67454" g_stop="67395" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="443" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="512" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="574" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65210" g_stop="65001" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="784" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E728114" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70154" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67831"/>
          <exon e_start="67752" e_stop="67640"/>
          <exon e_start="67454" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="65001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTA</genome_strand>
        <mrna_strand>GCCACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728424" ref_strand="+" ref_description="SGN-E728424 [LA17DB02]">
      <seq>acatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgaaatgtgtgccaggactgtctattgtacaaatattgataagaaggttactcaggctgatgtcaagaatttttttgaaaccagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactggtgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtngcatgatgcagtaagccaatgtgtgtgctcatggacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72281" stop="64827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71981" g_stop="71911" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="182" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="227" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67903" g_stop="67831" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="300" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67752" g_stop="67640" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="413" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67454" g_stop="67395" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67214" g_stop="67167" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="521" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67096" g_stop="67028" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="590" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66162" g_stop="66101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="652" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65210" g_stop="65127" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="736" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E728424" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71981" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67831"/>
          <exon e_start="67752" e_stop="67640"/>
          <exon e_start="67454" e_stop="67395"/>
          <exon e_start="67214" e_stop="67167"/>
          <exon e_start="67096" e_stop="67028"/>
          <exon e_start="66162" e_stop="66101"/>
          <exon e_start="65210" e_stop="65127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGG</genome_strand>
        <mrna_strand>ACATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGGTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTNGCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589102" ref_strand="+" ref_description="SGN-E589102 [42669]">
      <seq>cttcttcctaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaaatatcaaattgataaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagtatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcagccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaagagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagctaacaagactatgggtgttgatggttttcaaaataacagaaggagaggcaacaactttaaccaggccaaaaggagaatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagataacaatgtcactgaggagcaccttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72760" stop="67576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72460" g_stop="71911" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="651" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="696" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67903" g_stop="67876" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="724" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E589102" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72460" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
          <exon e_start="67903" e_stop="67876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATC</genome_strand>
        <mrna_strand>CTTCTTCCTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAAATATCAAATTGATAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGTA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCAGCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAAGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTATGGGTGTTGATGGTTTTCAAAATAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAACAACTTTAACCAGGCCAAAAGGAGAATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAACAAT......................................................................................GTCACTGAGGAGCACCTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702663" ref_strand="+" ref_description="SGN-E702663 [FA19BD07]">
      <seq>ccccattgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtggtactgttggtgctggtgatcagatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcatagagaaaatagcatcaggctaacagtatatgttctctgagataaatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72754" stop="69618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72454" g_stop="71911" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="656" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69920" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="701" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E702663" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72454" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTT-TCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA</genome_strand>
        <mrna_strand>CCCCATTGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCATAGAGAAAATAGCATCAGGCTAACAGTATATGTTCTCTGAGATAAATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542279" ref_strand="+" ref_description="SGN-E542279 [TUS-63-I2]">
      <seq>tctctctcatcaccatcttcctaaatgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtggtactgttggtgctggtgatcagatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72773" stop="69641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72473" g_stop="71911" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70051" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="674" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69964" g_stop="69941" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="698" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E542279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72473" e_stop="71911"/>
          <exon e_start="70161" e_stop="70051"/>
          <exon e_start="69964" e_stop="69941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCT</genome_strand>
        <mrna_strand>TCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557823" ref_strand="+" ref_description="SGN-E557823 [16682]">
      <seq>cttcttccntaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaataatcaaattggtaaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagtatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcagccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaagagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagctaacaagactatgggtgttgatggttttcaaaataacagaaggagaggcaacaactttaaccagggcaaaaggagaatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72760" stop="69771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72460" g_stop="71911" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70071" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="632" r_length="91" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E557823" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72460" e_stop="71911"/>
          <exon e_start="70161" e_stop="70071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCC-TAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATG</genome_strand>
        <mrna_strand>CTTCTTCCNTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAATAATCAAATTGGTAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGTA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCAGCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAAGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTATGGGTGTTGATGGTTTTCAAAATAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAACAACTTTAACCAGGGCAAAAGGAGAATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480169" ref_strand="+" ref_description="SGN-E480169 [cSTD-13-A3]">
      <seq>agaataccaacaaattcctctgccttctgttattgaactttgttgctatatataacaaaaaccctattgccttttcctttctctctcctttcttcttttctctctcatcaccttcttcctaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaataatcaaattggtaaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagtatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgctcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagctaacaagctatngggtgttgatggttttcaaaataacagaaggagaggcaacaactttaaccagggcaaaaggagaatgaacaatagagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72869" stop="69812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72569" g_stop="71911" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70161" g_stop="70112" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="701" r_length="50" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E480169" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72569" e_stop="71911"/>
          <exon e_start="70161" e_stop="70112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTG-CTTTT--TTGCTTTCT-CTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTA-CGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTA</genome_strand>
        <mrna_strand>AGAATACCAACAAATTCCTCTGCCTTCTGTTATTGAACTTTGTTGC--TATATATAACAAAAACCCTATTGCCTTTTCCTTTCTCTCTCCTTTCTTCTTTTCTCTCTCATCACCTTCTTCCTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAATAATCAAATTGGTAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGTA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGCTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAG-CTATNGGGTGTTGATGGTTTTCAAAATAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAACAACTTTAACCAGGGCAAAAGGAGAATGAACAATAGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614934" ref_strand="+" ref_description="SGN-E614934 [64727]">
      <seq>cacctaaacttcacttctctctacaaacaaaaacaagaataccaccaaattcctctgccttctgttattgaactttgttgctatatataacaaaaaccctattgccttttcctttctctctcttctcttcttttctctctcatcaccttcttcctaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaataatcaaattgataaaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagtatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcagccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaagagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagttaacaagactatgggtgtcgatggttttcaaaataacagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72906" stop="71611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72606" g_stop="71911" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E614934" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72606" e_stop="71911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTAAACTTCACTTCTCTCTCTACAAACAAAAACAAGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTG-CTTTT--TTGCTTTCTC-TCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGT-GAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG</genome_strand>
        <mrna_strand>CACCTAAACTTCACTTC--TCTCTACAAACAAAAACAAGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAACTTTGTTGC--TATATATAACAAAAACCCTATTGCCTTTTCCTTTCTCTCTCTTCTCTTCTTTTCTCTCTCATCACCTTCTTCCTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAATAATCAAATTGATAAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGTA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCAGCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAAGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGTTAACAAGACTATGGGTGTCGATGGTTTTCAAAATAACAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428507" ref_strand="+" ref_description="SGN-E428507 [STM-50-O18]">
      <seq>agaataccaacaaattcctctgccttctgttattgaactttgttgctatatataacaaaaaccctattgccttttcctttctctctcctttcttcttttctctctcatcaccttcttcctaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaataatcaaattggtaaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagtatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgctcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagctaacaagactatggggtgtgatggttttcaaaataacagaaggagaggccacaactttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72869" stop="71611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72569" g_stop="71911" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E428507" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72569" e_stop="71911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTG-CTTTT--TTGCTTTCT-CTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG</genome_strand>
        <mrna_strand>AGAATACCAACAAATTCCTCTGCCTTCTGTTATTGAACTTTGTTGC--TATATATAACAAAAACCCTATTGCCTTTTCCTTTCTCTCTCCTTTCTTCTTTTCTCTCTCATCACCTTCTTCCTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAATAATCAAATTGGTAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGTA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGCTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTATGGGGTGTGATGGTTTTCAAAATAACAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300303" ref_strand="+" ref_description="SGN-E300303 [cLEW-17-E22]">
      <seq>ctctctcatcaccatcttcctaaatgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtggtactgttggtgctggtgatcagatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72772" stop="71611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72472" g_stop="71911" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E300303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72472" e_stop="71911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG</genome_strand>
        <mrna_strand>CTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312711" ref_strand="+" ref_description="SGN-E312711 [cTOA-8-I21]">
      <seq>tcctaaatgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtggtactgttggtgctggtgatcagatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72755" stop="71619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72455" g_stop="71919" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E312711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72455" e_stop="71919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACA</genome_strand>
        <mrna_strand>TCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558879" ref_strand="+" ref_description="SGN-E558879 [18289]">
      <seq>aaattcctctgccttctgttattgaactttgttgctatatataacaaaaaccctattgccttttcctttctctctcttctcttcttttctctctcatcaccttcttcctaaatgagtatttatcaataaacccattatactctgtgaattcccatttgatcaatttttcataaagaaaaatcaaattggtaaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttttgaagctttttctgttctgggtgtgttttattttttctgggttttgagcatttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcagccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaagagttttttccttcttcttataatcgtgccgctggtggtgatcagatgattctcagtaactttgtaccagctaacaagactatgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72858" stop="71639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72558" g_stop="71937" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E558879" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72558" e_stop="71937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTG-CTTTT--TTGCTTTCTC-TCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGG</genome_strand>
        <mrna_strand>AAATTCCTCTGCCTTCTGTTATTGAACTTTGTTGCTA--TATATAACAAAAACCCTATTGCCTTTTCCTTTCTCTCTCTTCTCTTCTTTTCTCTCTCATCACCTTCTTCCTAAATGAGTATTTATCAATAAACCCATTATACTCTGTGAATTCC-CATTTGATCAATTTTTCATAAAGAAAAATCAAATTGGTAAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTTTGAAGCTTTTTCTGTTCTGGGTGTG-TTTTA-TTTTTTCTGGGTTTTGAGCA-TTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCAGCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAAGAGTTTTTTCCTTCTTCTTATAATCGT-G--CCGCT-G-G-TGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTATGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246271" ref_strand="+" ref_description="SGN-E246271 [cLEF-40-E18]">
      <seq>aaattcctctgccttctgttattgaaatttgttgctatatatataacaaaaaccctattgcttttttgctttctctctcttcttttctctctcatcaccatcttcctaaatgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatcgctgaagctttttctgttctgggtgtgtttttatttgtttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72858" stop="71831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72558" g_stop="72131" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E246271" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72558" e_stop="72131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGT</genome_strand>
        <mrna_strand>AAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATCGCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTGTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300209" ref_strand="+" ref_description="SGN-E300209 [cLEW-17-E10]">
      <seq>ctctctcatctccatcttcctaaatgagtatttatcaataagcccattatgggggggggattgctcattccattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="72772" stop="71874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72472" g_stop="72174" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E300209" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72472" e_stop="72174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCAC</genome_strand>
        <mrna_strand>CTCTCTCATCTCCATCTTCCTAAATGAGTATTTATCAATAAGCCCATTATGGGGGGGGGATTGCTCATTCCATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747624" ref_strand="+" ref_description="SGN-E747624 [GI|2852990]">
      <seq>ggcacgagctttttttcgccccaattttttttttttttggccacgatgggatctcttctccggatgaatcgccttttatcttccatcgtggagtcatgtaactgcatcattgacccacagttgcctgctgacgacttgctaatgaagtatcagtacatttctgattttttcatagcacttgcttatttctccattccagtggagttgatatacttcgttaagaagtctgctgtctttccatatagatgggttcttgtgcagttcggtgctttcatagttctttgtggagcaacccatcttatcaacttatggacatttaatatgcatacaaggaatgtggcaatagtaatgactactgcaaaggccttgactgcactggtgtcatgtataactgctctcatgcttgtccacatcattcctgatttattaagtgtcaaaactagagaactgttcttgaaaaagaaagctgcacagcttgaccgtgaaatgggtattattcggactcaggaggagacaggtagacatgttagaatgctaactcatgaaatccgaagcactcttgatagacatactattttaaagactacacttgttgagctaggaagaacattggcattggaagagtgtgcattatggatgccaacacgtactggactagagcttcagctttcttacactttacgacaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatcatgtcgtgaaaatatcaccaaattctcctgtcgcaagacttcgacctgctgggaaatacatgcctggtgaggtggttgctgtcagggttccacttctgcatctgtcgaactttcagattaatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcagacagtgcaagacaatggcatgttcatgagctggagcttgttgaagtggtagctgatcaggttgctgttgctctttcacatgctgctatattagaagaatcaatgagggctagggatcttcttatggagcagaatgtggctcttgatctggcaagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggctgttatgaatcatgaaatgagaactcccatgcatgcaataattgcactttcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttagcaacgctcatcaacgatgtcttggatctttcaaggctagaggatggaagtcttcaacttgatattggcactttcaatctccatgctttatttagagaggtccatagcttaatcaagcctattgcatctgtgaaaaagctgttcgtcacacttagtttgtcgtcagatttgccggaatatgtaattggggatgaaaaacggttaatgcaaattctcttaaacgttgttggcaatgctgtaaagttctcaaaggaaggcaacgtatcaatctccgcttttgttgcaaaatcagactctttaagagatcctagagcccctgaattttttgctgtgcctagtgaaaatcacttctatttacgggtgcagataaaagatacggggataggaattacaccacaggatattcccaacctgtttagcaagtttacacaaagccaagcgctagcaactacaaattctggtggcactgggcttggtcttgcaatttgtaagaggtttgtgaatcttatggaaggacatatttggattgaaagtgaaggtcttggcaaggggtctactgctatatttatcattaaacttggcattcctggacgtgcaaatgaatctaagctcccctttgtgaccaaattgccagcaaatcacacgcagatgagttttcaaggattaaaggttttggtgatggatgagaatggtgttagcaggatggtaaccaaaggtctgcttacacaccttggatgtgatgtaactactgttggctcacgcgatgagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgatttttccactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttacttgaaacattagaaactttattgccttggcttgacacaacaatagattattatgtgtttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91269" stop="2247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90971" g_stop="90898" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90897" i_stop="86917" i_length="3981">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86916" g_stop="85999" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="993" r_length="918" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84599" g_stop="84231" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1362" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84230" i_stop="84089" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84088" g_stop="83822" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1363" r_stop="1629" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83821" i_stop="83692" i_length="130">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83691" g_stop="83564" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1630" r_stop="1757" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83563" i_stop="83421" i_length="143">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83420" g_stop="83223" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1758" r_stop="1955" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83222" i_stop="81264" i_length="1959">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81263" g_stop="80588" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1956" r_stop="2631" r_length="676" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80587" i_stop="80501" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80500" g_stop="80473" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="2632" r_stop="2659" r_length="28" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E747624" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90971" e_stop="90898"/>
          <exon e_start="86916" e_stop="85999"/>
          <exon e_start="84599" e_stop="84231"/>
          <exon e_start="84088" e_stop="83822"/>
          <exon e_start="83691" e_stop="83564"/>
          <exon e_start="83420" e_stop="83223"/>
          <exon e_start="81263" e_stop="80588"/>
          <exon e_start="80500" e_stop="80473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCA-CTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTTGTAAGTCTCATAAACCCTAACTAGTTTTTTTTAGTTTTTTTTGCTAATTTTGACTTTTAATTGCTGAAAAATAGTCTTATTGAAGTGTTTTTTTAGGTTTACTTGTTGTTAATTAGCTTCACTTGTGATAATGTATTTAAAGTTCGTGATGAATCGTTTTGAATGTTGAATTTCAGCTCATTTTTGTAGATTGTTTTGTTTATAATAACGATTGATTTTTGGTGATTAACTAGCTGAAATTGATTAATTTACAATAAACTAAACTGAATAAATTGAAGTTTCCAGGCAGTAACTGAGGTTTGGTTTTTCATGGAGCAAGGTTATTAGTTTTTGGATAGTGGGGTTTGGAATGATTAATGTATAAATGAACTGAAATTGCAACCAATTAATGATTTTTAGAGTTTATTTGCTTTTGTTGTGATGATGTCTTCATGATTATGATCATTCTTTTTTTGGAATATGTTCTTATGGGTTGAGTTTGTGGGATGAATGTAAAGTTCAACTCATTTGCGCATGTTCTTTTTATTTATCCCCGTAAGACTGATTTCGGTGTTTAACTAGCTCAGATTAGTTAGTCTACAACTACATGCCAAGTGTAATCCGACAAAATGGGATCTAGGGAAGTAAGAGTGTAAGCAGACCTTATCAGTTATCCCTACCTTACCACAAATGAGATTTGGGATAAGATGTGTATCCGTCATCTCTAGTGGTTCACTATCTGAGGAATAATTCATGGAAGAAGCCTATAGTAAACACATTCGCTAAACATATCTCAAGGTGGTATGAAAGAAGAAATAAATGAAGATTAAAGGCATGTGAGAGTGATAAAAACAAACCAAAAGTTGTTAATGGGGAAGAGTTCAAATTGAGAAATAATTTCATGTGTTAAGTATGCACAAGAAAAATATGTCACATGCGGTGAAAACTTTGCACTAACCGCATGTGCCACAGTTTTCCCAAGTTAAGAGAATCTAATACTAGTAAAATATAACTCAAACAAATTCAAACCATCAAAAAATGGGGAAGTGAACATTTAAACGAATAATATCGAGGATGTTACATACTAATAAAATGAGCATAATATTTGGATGATGAATAATATCTTTGAAGTGCTGAATAATGATTGTATGACTATCACTCTGGGGAAACAAATTATTCTGAAATGCTTTGTCACTGAAAGTGAATATGACGTCATTGAAATTTGGAGGATCTAAGTAGATTCATGCTTTCTTACATCATATGTTCTTTTCTATTGTAATGTTGGTTTCTATAGCATCATTATATTGCTCAAATTTATTTCACAGTTCTAACCACATAACCTATTTTCAGAATTTGTATTTGTTTTGTCCCACAAAATAATGAACATTAAGACCAAGCATGTGCATGTCATACGTTCGGTAACGTGTACATTTTGCCTTTTTTTTCCTTTTTAAAGAGGTCATGGGCTTCGTCATTATTAATACAAAATGGACAAAGACACGTGAATGATATGCTCTAGTAAATATGCTCCTCATTAACCATAGGCAGCTCTAGTAACAGTAGATGTTTAGAAGAAGGAACACATCAAACCAAGATATCAAGAAGAAAAAAGTGACCAAATCCGTCCCTAAATATTTTCTTTCTTTATTGTCTATATATGTATATATTTTATGACATCCAATAATAATAAATGTTAGCGTAGATGGTCAAGACCTCATAATTTATTTTTGATGAAGAGACCTCATAATTTATTTTGTGAACACGATTCATACGTTCTAGTGTATTTAGCCATTGGTTGATGCATAAGACAAAAATTCTTGTTGTTTGTCGTTCACCACATGTGAAAATCAAATTATAGATAATGAAAATCAGATTATAGATGACTATTGAACAGATGAAGAACTACAAAATAGATGTAAATATGATTCTTTTACTTATCCTCCGTAGATGCCATAAAAATCAAGTACTCAGTTCAAGTTTTTAAAATAAATCATTAGAAGTAGGAAAACATTAGCTAGACTTAACAGTTTAAATTTTTGCTTCTTCTTGAAGGACTTAGTGTGGGGCTTCCATCGTTTTTTGTGAGAAATCTCCTGAAAATGAAGGTGAAATTGGCATTGTTAATAATACCATGTTTAGGATAATGTAAGGTGGCAACTATTCATTGGGAGAAATTATTGTCAAAGCGGTTTCTTTTCTTCCGTTGGCTGCATTAGGTGTCTTTTGAAGTAGGTTATAGGTGTCTTTTGAAGTAGGTTATTTAGGTTAGGGATATTTAGGTAATAACTTTTAAGTTTTTGAGTTCATGCTTTCAGTATAATATAGATCGGTCTCTAACCATATTTTTACTTGTGATCAAGCCATAGATACCGGTAAGAAGAGAAATAGATGATAAAAATGATAATTATAATTTTTTTTTGTATAACAAGCTGTTCGTTTTCTATTTAATTCATAGAAAATATATGTTCTTGGGAGTCCCTGATGGTTAAATACAACAAGATTCACCATGACTGCTACTTTAGAGAAACACTTGAGTGAAAGCCTATAAAATTGCATCTGTAACTGGATACCTACATTGAAAACCATCGTTCACGCTTCGATTTTGATCATTTTGGACTAGCAGCACTATCCTTGTATACTAGACAGGCTACTGTGATCATATTCTCTCTGCTATGATCAATAATGGGCTCAGAAAGCAGCTCTAATATTAATTGCAATAAACTAAACTTGCAATCTATAGAGAGAAAAGGAAAAGTTCATTTAATTGGTAAAATTGTGTAAAGCTCTCAGTACAATAATTCAAAAGGGAGATGATACAAGAGAAAGGGATTAAGAGGCAACTCCATCAACTGAGTTTTGTTTACCCAATGATTGATTTCATGCCAGAATGAATCGAGGAAACAAGGATGTCTATAATGTCAACAATCCCTCCACTCCTGCAGGAAGGTGAAAGGAGAGAAACTGGGAGAGGAAGAAAAGAGGAACTTTACCACTCCTCTGTTCTAATCTATGTGAAGGTGTTTGACTGTGCTCGACGTTTAAGAATGAAAGGAAGACTTTTGAGACTTGTTGTTCAAAGTAAGCCATTGTTAAGGGTAAAATGTGAAATTTAAAGTTTAATTGTTACTAAATATAGAAATATGTCTCTTTTTGGGGCTTATTTTAAAGGAAAGAGTGTCACATTAATTGGGACAAAGGGATGCATTTTCTGTCCAAAATTAAGATGTATATACTTAGATGCAAGTGGCACCATAGATCTGGTACTACCAAAAGGTATCCAATTAATCCATGCTTGGCCTCCCATTACAATGCCTGTAAGAAATAATTGTTCTTTCCACCTCCACAACTAATTGTCGAACTATTATATCTATCTTTATTCCCTTAAATGTGAAACGAATTACACAGACTATTTGGCGCTACTTTTTTCCTAGATATATTGAAGACCTAGTTTCTTATATTTGTGGGAAGCATTTGGAATTTTCTATAAGAACTATATCATGTTCGAAAACATTCTTATAATTTTCGACAAGATTGCTGAAGGAGTGTCTTATCTTTTATGTATTCTTGACTAGAGGAGTTTAATAAAAAGAAAATAGAAAGGAACAAAGAAACGTACAAGTGTATAAAAGGAGTTGGGGCAAAGACATCAGAAACATTTAGACCTACGATTTCATCCTACATGTTATGGTTTTAGTTCGTTAGAGGTTTTAACATATTAAATCAGCAAAGTTGTGACATACATAAAGTGCATAACATAAAGATGAAATTCACAATTTGCTGATCTTTTGGTGCAAGGGAACTATTTTTTACACTATAAGTTAGCTGTTAATTTCAATATTGGCTTCTTCTACACCTTGTTGTTCTTGAGTATAATTCTATTTTCACAAACATATGTCAGAACTTATGCTGCAATTAAATATATTCAGGTTGTTTAACTCTTGTACAGCTTGTTATTCTTCTGAGGCATATTTCCTTCTCCTTATTTGCTAACTTGTGCTGCAGTTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAGGTGCCCTTCATCACCCTCTTTTCTTTTTTACTTGCAAATTCTAGATTACCTGTCAGGAAAAAAAGTGTCATTACAGATATTTTGCACTTCAATATGTTTGCTGGACCTGCTGACTGATATATGTGTCTGCTTATTCCTGTAGGTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAGGTATATTTTTACAAGCTTGATATACTATCTTCGTAGGTTAAGGATAGTCACAAATATGATATTTTAGACTTATAACTGTCAGATGTTCTGTTCTTGATATTTGTAATATTCTAAGTAATACTTTCTGTAGATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAGGTACGGGGTACCCAGTTCCTTAGTGTTCTTTTTCCGACTCTGATTTTCATTTTGCTACGTGAACTTGGTAACTGCTTCATATTCAATTTCTTTCCTCTTACTGTATTTAGTATTGACACATCTTCTGATGGGACACAAAACAGGTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGGGTGAGTACTATCTGGACCCCTTTATCCTCAGCTCTTGTCTTGCCATGCTGTTTAATGATCCATCTAGTTCGTGAGTTTCTCATCTTATATGTATTGAGCTGTCTTACTCACTTTTACATGAGACTGAACAAGTAAATACTTAATAAGAGAGTACTGAAATTAGAATCTTTACAACTATATGTGGATGTGCTGGTGACATGTACTTAGGAGTATATGCCTTTTTCTAGGGCTAACCCATCGGTGGCCCCCTAAAGTTGGCATCAACTTTCACTTAGACACCTGAACTAGACTTTGTTCATTTTTGACATCTCATGTGAGGCTCTGATGTATCATTTAACACTTTTTGCTTTTTGCTGATATGGCATAGTGAGTGTGACTCACTCATTAACAGCGCGTCAGACTCTTTTTCAGCCAATTTTTATTTTATATTTCCTTCTTCTTCCCCATTTTTTCAACCACCATTTTCTCAAGTTTGAACTTCTTCCATGGTGAGATATATTCGATGATGCCACAAACGAGGAATCTAATTTCAAATGTCAGAGCTTTCTCCAAGATTTCCCAAGGATGATGCCCTTCTTCCTCAATTTAATTTGAGGGAAAAAGACTGAAATTTGAAGAAAAAAAAAGAAATTTGGGGAAGAATAAAAAATCATTAAAAAATGAGATAATCTCCTTAAAAGAAACTTAATAATGTGATATGAACACGTACACATTTGTATTTTTAGAAGTTCATTGGATCTTAGATTTTTTCTTTTTTAAGCAATAAAATCTGTAGAATTTTCTTTTAGCAATAAAATTTGCGGAGCTGCAATTATTTGAAAAAATTTGAGTTACACAAGTTCACTGAAGGGGTGTGTGCAGTGAGAAGACCATGAATGGGGTGGGGTTGGGGTGGGATATGCTTCTCCTAAAGATTTTTTAAGGTGATTTAATCCTTTTTAATATTATTTGGGAAGAAATGCCACGTGTCATCGATCCATTAGCCAATTTTTCTAAAAAAATAATAGATAGTTTATTATTTTGAAGAGAACGACAAGTGTCCTCATTTAATTTGACACTTTACACATCATCCGCGAGTGGAACACACTCACCATCATATTTTTGTTGAATGTAAAAAAAGTGCTAAATGACGCATCAGGGCCTCACATGAGGTGTCTAAAATGAACAAAGTCTAGTTCAGGTGTCTAAGTGAAAGTTAATGCCAACTTTAGGGGGCCACCGTTGGGTTAGCTGCTTTTTCTAATGAAAAGAAGGAAAAGTTAAGGATTTACAGTGTCAGGATCGCGAGAAGGGAAGGAGAGATCACCAGCCTGACCCTAGGAGCTCACATCTTTATCAGAGTATATGCCTTTTTTCTAATGAAAAGAAGGAAAAGTTTAGCATTTACGGTATCAGGATCGCGAAGAGGGAAGGAGAGATGACCAGCCTGACTGTAGGAGCTCACATCATTATCTCTAATTGGAAGAAGGAAGTGACCAACTGGAAGTAGTGCTTTCAAATCCAATAAAAGGGTATACTGCTCTTCCAGAAATAAGAGGATGGAGGAAAGAGTGACTTCATAGATGTCTTAATACAAGTCTTTGCTATGTATGCATCGAATTAAAAATGTCAGTCAATCTGGTTCGCCTTAGTATATATATATATATATATATATATATATATATATATATATAACAGTAACAGATTCCCTTTTCTCTTATCCTTTTATCGTCCCACCGCACCCCTGCCTTCCACACCGCTATTGATATCTTTAACCTGAGGTATTATAAATTGAACGCAGTTGTTTTATTGTCGGATAAGAATTTGTATGATTGGTAATCCTACGACTCTGTGATCGTTGCTTTTCTCTTTTTGATGTGACCTCATTATTATTATTTTTATTATTTATCCTACCTGATTATATGATTAGTTGACATTAGTTATCAGAATTGTTTTTGTTTCTTATACTCCTTCATGCAGTGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTAATTGCCTTTTCATATTCATAGTATTTTCTGACCTTACTGTATAACAAAGAGTTTGAACTGAAGGGGTGTTTTGACTCTATGCATCACAGAAGCAAACAGCAAATAACAAAACTAA</genome_strand>
        <mrna_strand>GGCACGAGCTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG..............................................................................................................................................GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG..................................................................................................................................ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAG...............................................................................................................................................GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTA.......................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364817" ref_strand="+" ref_description="SGN-E364817 [cLPT-4-E6]">
      <seq>ttttaaaaaaaaacacataatctatttgttgtgtcaagccaaggcaataaagtttctaatgtttcaagtaaatgaagggttgtgtcaaatatcagatcttatacaaagttccatggaatatgaacacttctggtagtggaaaaatcaactcctttctacaaatttgttgaatgcctcgagcaatgtcgcgttacatacaccttcttcaagtgatatattgtgttatccaccaagaaatccaaagacgagaactatatacaacgcctcgtgcatttgggtgaatttttttcatatggttgctgcatattttcctcctacattcactaagattcaagtacaactccatgttctaagagctcagataaaacacttctcattttatccactgacacaggttttaggataactccatccataccaactctcatgcagttttctttcgtaactctgtctgtgtatcccgtcaatgccacaataagtggcctaccgtgacgtttcccaaacctttcatgtatcactacagcaacttcgtaacagtctataccttgcatgctgacatccatgataactaccttgtgttcatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="80287" stop="81472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80585" g_stop="81172" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E364817" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80585" e_stop="81172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAAAACACATAATAATCTATTGTTGTGTCAAGCCAAGGCAATAAAGTTTCTAATGTTTCAAGTAAATGAAGGGTTGTGTCAAATATCAGTATCTTATACAAAGTTCCATGGAATATGAACACTTCTGGTAGTGGAAAAATCAACTCCTTTCTACAAATTTGTTGAATGCCTCGAGCAACGTCGCGTTACATACACCTTCTTCAAGTGATATATTGTGTTATCCACCAAGAAATCCAAAGACGAGAACTATATACAACGCCTCGTGCATTTGGGTGAA--TTTTTCATATGGTTGCTGCATATTTTCCTCCTACATTCACTAAGATTCAAGTACAACTCCATGTTCTAAGAGCTCAGATAAAACACTTCTCATTTTATACACTGACACAGGTTTTAGGATAACTCCATCCATACCAACTCTCATGCAGTTTTCTTTCGTAACTCTGTCTGTGTTCCCCGTTAATGCCACAATAAGTGGCCTACCGTGACGTTTCCCAAACCTTTCATGTATCACTACAGCAACTTCGTAACAGTCTATACCTTGCATGCTGACATCCATGATAACTACCTTGTGTTCATGTGT</genome_strand>
        <mrna_strand>TTTTAAAAAAAAACACATAAT-CTAT-TTGTTGTGTCAAGCCAAGGCAATAAAGTTTCTAATGTTTCAAGTAAATGAAGGGTTGTGTCAAATATCAG-ATCTTATACAAAGTTCCATGGAATATGAACACTTCTGGTAGTGGAAAAATCAACTCCTTTCTACAAATTTGTTGAATGCCTCGAGCAATGTCGCGTTACATACACCTTCTTCAAGTGATATATTGTGTTATCCACCAAGAAATCCAAAGACGAGAACTATATACAACGCCTCGTGCATTTGGGTGAATTTTTTTCATATGGTTGCTGCATATTTTCCTCCTACATTCACTAAGATTCAAGTACAACTCCATGTTCTAAGAGCTCAGATAAAACACTTCTCATTTTATCCACTGACACAGGTTTTAGGATAACTCCATCCATACCAACTCTCATGCAGTTTTCTTTCGTAACTCTGTCTGTGTATCCCGTCAATGCCACAATAAGTGGCCTACCGTGACGTTTCCCAAACCTTTCATGTATCACTACAGCAACTTCGTAACAGTCTATACCTTGCATGCTGACATCCATGATAACTACCTTGTGTTCATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744563" ref_strand="+" ref_description="SGN-E744563 [GI|1163080]">
      <seq>gagccaactccattgtttcactttcccttttgatcatcatcaatcttcatcactttttttcgccccaatttttttttttttggccacgatgggatctcttctccggatgaatcgccttttatcttccatcgtggagtcatgtaactgcatcattgacccacagttgcctgctgacgacttgctaatgaagtatcagtacatttctgattttttcatagcacttgcttatttctccattccagtggagttgatatacttcgttaagaagtctgctgtctttccatatagatgggttcttgtgcagttcggtgctttcatagttctttgtggagcaacccatcttatcaacttatggacatttaatatgcatacaaggaatgtggcaatagtaatgactactccaaaggccttgactgcactggtgtcatgtataactgctctcatgcttgtccacatcattcctgatttattaagtgtcaaaactagagaactgttcttgaaaaagaaagctgcacagcttgaccgtgaaatgggtattattcggactcaggaggagacaggtagacatgttagaatgctaactcatgaaatccgaagcactcttgatagacatactattttaaagactacacttgttgagctaggaagaacattggcattggaagagtgtgcattatggatgccaacacgtactggactagagcttcagctttcttacactttacgacaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatcatgtcgtgaaaatatcaccaaattctcctgtcgcaagacttcgacctgctgggaaatacatgcctggtgaggtggttgctgtcagggttccacttctgcatctgtcgaactttcagattaatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcagacagtgcaagacaatggcatgttcatgagctggagcttgttgaagtggtagctgatcaggttgctgttgctctttcacatgctgctatattagaagaatcaatgagggctagggatcttcttatggagcagaatgtggctcttgatctggcaagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggctgttatgaatcatgaaatgagaactcccatgcatgcaataattgcactttcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttagcaacgctcatcaacgatgtcttggatctttcaaggctagaggatggaagtcttcaacttgatattggcactttcaatctccatgctttatttagagaggtccatagcttaatcaagcctattgcatctgtgaaaaagctgttcgtcacacttagtttgtcgtcagatttgccggaatatgtaattggggatgaaaaacggttaatgcaaattctcttaaacgttgttggcaatgctgtaaagttctcaaaggaaggcaacgtatcaatctccgcttttgttgcaaaatcagactctttaagagatcctagagcccctgaattttttgctgtgcctagtgaaaatcacttctatttacgggtgcagataaaagatacggggataggaattacaccacaggatattcccaacctgtttagcaagtttacacaaagccaagcgctagcaactacaaattctggtggcactgggcttggtcttgcaatttgtaagaggtttgtgaatcttatggaaggacatatttggattgaaagtgaaggtcttggcaaggggtctactgctatatttatcattaaacttggcattcctggacgtgcaaatgaatctaagctcccctttgtgaccaaattgccagcaaatcacacgcagatgagttttcaaggattaaaggttttggtgatggatgagaatggtgttagcaggatggtaaccaaaggtctgcttacacaccttggatgtgatgtaactactgttggctcacgcgatgagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgatttttccactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttacttgaaacattagaaactttattgccttggcttgacacaacaatagattattatgtgtttttttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91315" stop="80287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91016" g_stop="90898" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90897" i_stop="86917" i_length="3981">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86916" g_stop="85999" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="1036" r_length="918" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84599" g_stop="84231" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1037" r_stop="1405" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84230" i_stop="84089" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84088" g_stop="83822" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1406" r_stop="1672" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83821" i_stop="83692" i_length="130">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83691" g_stop="83564" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1673" r_stop="1800" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83563" i_stop="83421" i_length="143">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83420" g_stop="83223" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1801" r_stop="1998" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83222" i_stop="81264" i_length="1959">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81263" g_stop="80588" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1999" r_stop="2674" r_length="676" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E744563" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2675</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91016" e_stop="90898"/>
          <exon e_start="86916" e_stop="85999"/>
          <exon e_start="84599" e_stop="84231"/>
          <exon e_start="84088" e_stop="83822"/>
          <exon e_start="83691" e_stop="83564"/>
          <exon e_start="83420" e_stop="83223"/>
          <exon e_start="81263" e_stop="80588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTTGTAAGTCTCATAAACCCTAACTAGTTTTTTTTAGTTTTTTTTGCTAATTTTGACTTTTAATTGCTGAAAAATAGTCTTATTGAAGTGTTTTTTTAGGTTTACTTGTTGTTAATTAGCTTCACTTGTGATAATGTATTTAAAGTTCGTGATGAATCGTTTTGAATGTTGAATTTCAGCTCATTTTTGTAGATTGTTTTGTTTATAATAACGATTGATTTTTGGTGATTAACTAGCTGAAATTGATTAATTTACAATAAACTAAACTGAATAAATTGAAGTTTCCAGGCAGTAACTGAGGTTTGGTTTTTCATGGAGCAAGGTTATTAGTTTTTGGATAGTGGGGTTTGGAATGATTAATGTATAAATGAACTGAAATTGCAACCAATTAATGATTTTTAGAGTTTATTTGCTTTTGTTGTGATGATGTCTTCATGATTATGATCATTCTTTTTTTGGAATATGTTCTTATGGGTTGAGTTTGTGGGATGAATGTAAAGTTCAACTCATTTGCGCATGTTCTTTTTATTTATCCCCGTAAGACTGATTTCGGTGTTTAACTAGCTCAGATTAGTTAGTCTACAACTACATGCCAAGTGTAATCCGACAAAATGGGATCTAGGGAAGTAAGAGTGTAAGCAGACCTTATCAGTTATCCCTACCTTACCACAAATGAGATTTGGGATAAGATGTGTATCCGTCATCTCTAGTGGTTCACTATCTGAGGAATAATTCATGGAAGAAGCCTATAGTAAACACATTCGCTAAACATATCTCAAGGTGGTATGAAAGAAGAAATAAATGAAGATTAAAGGCATGTGAGAGTGATAAAAACAAACCAAAAGTTGTTAATGGGGAAGAGTTCAAATTGAGAAATAATTTCATGTGTTAAGTATGCACAAGAAAAATATGTCACATGCGGTGAAAACTTTGCACTAACCGCATGTGCCACAGTTTTCCCAAGTTAAGAGAATCTAATACTAGTAAAATATAACTCAAACAAATTCAAACCATCAAAAAATGGGGAAGTGAACATTTAAACGAATAATATCGAGGATGTTACATACTAATAAAATGAGCATAATATTTGGATGATGAATAATATCTTTGAAGTGCTGAATAATGATTGTATGACTATCACTCTGGGGAAACAAATTATTCTGAAATGCTTTGTCACTGAAAGTGAATATGACGTCATTGAAATTTGGAGGATCTAAGTAGATTCATGCTTTCTTACATCATATGTTCTTTTCTATTGTAATGTTGGTTTCTATAGCATCATTATATTGCTCAAATTTATTTCACAGTTCTAACCACATAACCTATTTTCAGAATTTGTATTTGTTTTGTCCCACAAAATAATGAACATTAAGACCAAGCATGTGCATGTCATACGTTCGGTAACGTGTACATTTTGCCTTTTTTTTCCTTTTTAAAGAGGTCATGGGCTTCGTCATTATTAATACAAAATGGACAAAGACACGTGAATGATATGCTCTAGTAAATATGCTCCTCATTAACCATAGGCAGCTCTAGTAACAGTAGATGTTTAGAAGAAGGAACACATCAAACCAAGATATCAAGAAGAAAAAAGTGACCAAATCCGTCCCTAAATATTTTCTTTCTTTATTGTCTATATATGTATATATTTTATGACATCCAATAATAATAAATGTTAGCGTAGATGGTCAAGACCTCATAATTTATTTTTGATGAAGAGACCTCATAATTTATTTTGTGAACACGATTCATACGTTCTAGTGTATTTAGCCATTGGTTGATGCATAAGACAAAAATTCTTGTTGTTTGTCGTTCACCACATGTGAAAATCAAATTATAGATAATGAAAATCAGATTATAGATGACTATTGAACAGATGAAGAACTACAAAATAGATGTAAATATGATTCTTTTACTTATCCTCCGTAGATGCCATAAAAATCAAGTACTCAGTTCAAGTTTTTAAAATAAATCATTAGAAGTAGGAAAACATTAGCTAGACTTAACAGTTTAAATTTTTGCTTCTTCTTGAAGGACTTAGTGTGGGGCTTCCATCGTTTTTTGTGAGAAATCTCCTGAAAATGAAGGTGAAATTGGCATTGTTAATAATACCATGTTTAGGATAATGTAAGGTGGCAACTATTCATTGGGAGAAATTATTGTCAAAGCGGTTTCTTTTCTTCCGTTGGCTGCATTAGGTGTCTTTTGAAGTAGGTTATAGGTGTCTTTTGAAGTAGGTTATTTAGGTTAGGGATATTTAGGTAATAACTTTTAAGTTTTTGAGTTCATGCTTTCAGTATAATATAGATCGGTCTCTAACCATATTTTTACTTGTGATCAAGCCATAGATACCGGTAAGAAGAGAAATAGATGATAAAAATGATAATTATAATTTTTTTTTGTATAACAAGCTGTTCGTTTTCTATTTAATTCATAGAAAATATATGTTCTTGGGAGTCCCTGATGGTTAAATACAACAAGATTCACCATGACTGCTACTTTAGAGAAACACTTGAGTGAAAGCCTATAAAATTGCATCTGTAACTGGATACCTACATTGAAAACCATCGTTCACGCTTCGATTTTGATCATTTTGGACTAGCAGCACTATCCTTGTATACTAGACAGGCTACTGTGATCATATTCTCTCTGCTATGATCAATAATGGGCTCAGAAAGCAGCTCTAATATTAATTGCAATAAACTAAACTTGCAATCTATAGAGAGAAAAGGAAAAGTTCATTTAATTGGTAAAATTGTGTAAAGCTCTCAGTACAATAATTCAAAAGGGAGATGATACAAGAGAAAGGGATTAAGAGGCAACTCCATCAACTGAGTTTTGTTTACCCAATGATTGATTTCATGCCAGAATGAATCGAGGAAACAAGGATGTCTATAATGTCAACAATCCCTCCACTCCTGCAGGAAGGTGAAAGGAGAGAAACTGGGAGAGGAAGAAAAGAGGAACTTTACCACTCCTCTGTTCTAATCTATGTGAAGGTGTTTGACTGTGCTCGACGTTTAAGAATGAAAGGAAGACTTTTGAGACTTGTTGTTCAAAGTAAGCCATTGTTAAGGGTAAAATGTGAAATTTAAAGTTTAATTGTTACTAAATATAGAAATATGTCTCTTTTTGGGGCTTATTTTAAAGGAAAGAGTGTCACATTAATTGGGACAAAGGGATGCATTTTCTGTCCAAAATTAAGATGTATATACTTAGATGCAAGTGGCACCATAGATCTGGTACTACCAAAAGGTATCCAATTAATCCATGCTTGGCCTCCCATTACAATGCCTGTAAGAAATAATTGTTCTTTCCACCTCCACAACTAATTGTCGAACTATTATATCTATCTTTATTCCCTTAAATGTGAAACGAATTACACAGACTATTTGGCGCTACTTTTTTCCTAGATATATTGAAGACCTAGTTTCTTATATTTGTGGGAAGCATTTGGAATTTTCTATAAGAACTATATCATGTTCGAAAACATTCTTATAATTTTCGACAAGATTGCTGAAGGAGTGTCTTATCTTTTATGTATTCTTGACTAGAGGAGTTTAATAAAAAGAAAATAGAAAGGAACAAAGAAACGTACAAGTGTATAAAAGGAGTTGGGGCAAAGACATCAGAAACATTTAGACCTACGATTTCATCCTACATGTTATGGTTTTAGTTCGTTAGAGGTTTTAACATATTAAATCAGCAAAGTTGTGACATACATAAAGTGCATAACATAAAGATGAAATTCACAATTTGCTGATCTTTTGGTGCAAGGGAACTATTTTTTACACTATAAGTTAGCTGTTAATTTCAATATTGGCTTCTTCTACACCTTGTTGTTCTTGAGTATAATTCTATTTTCACAAACATATGTCAGAACTTATGCTGCAATTAAATATATTCAGGTTGTTTAACTCTTGTACAGCTTGTTATTCTTCTGAGGCATATTTCCTTCTCCTTATTTGCTAACTTGTGCTGCAGTTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAGGTGCCCTTCATCACCCTCTTTTCTTTTTTACTTGCAAATTCTAGATTACCTGTCAGGAAAAAAAGTGTCATTACAGATATTTTGCACTTCAATATGTTTGCTGGACCTGCTGACTGATATATGTGTCTGCTTATTCCTGTAGGTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAGGTATATTTTTACAAGCTTGATATACTATCTTCGTAGGTTAAGGATAGTCACAAATATGATATTTTAGACTTATAACTGTCAGATGTTCTGTTCTTGATATTTGTAATATTCTAAGTAATACTTTCTGTAGATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAGGTACGGGGTACCCAGTTCCTTAGTGTTCTTTTTCCGACTCTGATTTTCATTTTGCTACGTGAACTTGGTAACTGCTTCATATTCAATTTCTTTCCTCTTACTGTATTTAGTATTGACACATCTTCTGATGGGACACAAAACAGGTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGGGTGAGTACTATCTGGACCCCTTTATCCTCAGCTCTTGTCTTGCCATGCTGTTTAATGATCCATCTAGTTCGTGAGTTTCTCATCTTATATGTATTGAGCTGTCTTACTCACTTTTACATGAGACTGAACAAGTAAATACTTAATAAGAGAGTACTGAAATTAGAATCTTTACAACTATATGTGGATGTGCTGGTGACATGTACTTAGGAGTATATGCCTTTTTCTAGGGCTAACCCATCGGTGGCCCCCTAAAGTTGGCATCAACTTTCACTTAGACACCTGAACTAGACTTTGTTCATTTTTGACATCTCATGTGAGGCTCTGATGTATCATTTAACACTTTTTGCTTTTTGCTGATATGGCATAGTGAGTGTGACTCACTCATTAACAGCGCGTCAGACTCTTTTTCAGCCAATTTTTATTTTATATTTCCTTCTTCTTCCCCATTTTTTCAACCACCATTTTCTCAAGTTTGAACTTCTTCCATGGTGAGATATATTCGATGATGCCACAAACGAGGAATCTAATTTCAAATGTCAGAGCTTTCTCCAAGATTTCCCAAGGATGATGCCCTTCTTCCTCAATTTAATTTGAGGGAAAAAGACTGAAATTTGAAGAAAAAAAAAGAAATTTGGGGAAGAATAAAAAATCATTAAAAAATGAGATAATCTCCTTAAAAGAAACTTAATAATGTGATATGAACACGTACACATTTGTATTTTTAGAAGTTCATTGGATCTTAGATTTTTTCTTTTTTAAGCAATAAAATCTGTAGAATTTTCTTTTAGCAATAAAATTTGCGGAGCTGCAATTATTTGAAAAAATTTGAGTTACACAAGTTCACTGAAGGGGTGTGTGCAGTGAGAAGACCATGAATGGGGTGGGGTTGGGGTGGGATATGCTTCTCCTAAAGATTTTTTAAGGTGATTTAATCCTTTTTAATATTATTTGGGAAGAAATGCCACGTGTCATCGATCCATTAGCCAATTTTTCTAAAAAAATAATAGATAGTTTATTATTTTGAAGAGAACGACAAGTGTCCTCATTTAATTTGACACTTTACACATCATCCGCGAGTGGAACACACTCACCATCATATTTTTGTTGAATGTAAAAAAAGTGCTAAATGACGCATCAGGGCCTCACATGAGGTGTCTAAAATGAACAAAGTCTAGTTCAGGTGTCTAAGTGAAAGTTAATGCCAACTTTAGGGGGCCACCGTTGGGTTAGCTGCTTTTTCTAATGAAAAGAAGGAAAAGTTAAGGATTTACAGTGTCAGGATCGCGAGAAGGGAAGGAGAGATCACCAGCCTGACCCTAGGAGCTCACATCTTTATCAGAGTATATGCCTTTTTTCTAATGAAAAGAAGGAAAAGTTTAGCATTTACGGTATCAGGATCGCGAAGAGGGAAGGAGAGATGACCAGCCTGACTGTAGGAGCTCACATCATTATCTCTAATTGGAAGAAGGAAGTGACCAACTGGAAGTAGTGCTTTCAAATCCAATAAAAGGGTATACTGCTCTTCCAGAAATAAGAGGATGGAGGAAAGAGTGACTTCATAGATGTCTTAATACAAGTCTTTGCTATGTATGCATCGAATTAAAAATGTCAGTCAATCTGGTTCGCCTTAGTATATATATATATATATATATATATATATATATATATATATAACAGTAACAGATTCCCTTTTCTCTTATCCTTTTATCGTCCCACCGCACCCCTGCCTTCCACACCGCTATTGATATCTTTAACCTGAGGTATTATAAATTGAACGCAGTTGTTTTATTGTCGGATAAGAATTTGTATGATTGGTAATCCTACGACTCTGTGATCGTTGCTTTTCTCTTTTTGATGTGACCTCATTATTATTATTTTTATTATTTATCCTACCTGATTATATGATTAGTTGACATTAGTTATCAGAATTGTTTTTGTTTCTTATACTCCTTCATGCAGTGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTA</genome_strand>
        <mrna_strand>GAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTT-TTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTCCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG..............................................................................................................................................GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG..................................................................................................................................ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAG...............................................................................................................................................GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356845" ref_strand="+" ref_description="SGN-E356845 [cTOS-22-I3]">
      <seq>gagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgatttttccactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttacttgaaacattagaaactttattgccttggcttgacacaacaatagattattatgtgtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="81490" stop="80290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81190" g_stop="80590" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E356845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81190" e_stop="80590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTT</genome_strand>
        <mrna_strand>GAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349443" ref_strand="+" ref_description="SGN-E349443 [cTOS-1-F18]">
      <seq>acgcgatgagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgatttttccactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttacttgaaacattagaanaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="81497" stop="80340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81197" g_stop="80640" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="576"/>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E349443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81197" e_stop="80640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAA</genome_strand>
        <mrna_strand>ACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356191" ref_strand="+" ref_description="SGN-E356191 [cTOS-20-O16]">
      <seq>acgcgatgagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgattttttcactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="81497" stop="80352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81197" g_stop="80652" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E356191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81197" e_stop="80652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTT</genome_strand>
        <mrna_strand>ACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTTCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560003" ref_strand="+" ref_description="SGN-E560003 [19588]">
      <seq>tgaaaatcacttctatttacgggtgcagataaaagatacggggataggaattacaccgcaggatattcccaacctgtttagcaagtttacacaaagccaagcgctagcaactacaaattccggcggcactgggcttggccttgcaatttgtaagaggtttgtgaatcttatggaaggacatatttggattgaaagtgaaggtcttggcaaggggtctactgctatatttatcattaaacttggcattcctggacgtgcaaatgaatctaagctcccctttgtgaccaaattgccagcaaatcacatgcagatgagttttcaaggattaaaggttttggtgatggatgagaatggggttagcaggatggtaaccaagggtctgcttacacaccttggatgtgatgtaactactgttggctcacgtgatgagtgcttgagagttgttacacatgaacacaaggtagttttcatggatgtcagcatgcaaggtataaactgttatgaagtcgctgtagtgatacatgaaaggtttgggaaacgtcacggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="84149" stop="80770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83849" g_stop="83822" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83821" i_stop="83692" i_length="130">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83691" g_stop="83564" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="156" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83563" i_stop="83421" i_length="143">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83420" g_stop="83223" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="354" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83222" i_stop="81264" i_length="1959">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81263" g_stop="81070" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="548" r_length="194" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E560003" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83849" e_stop="83822"/>
          <exon e_start="83691" e_stop="83564"/>
          <exon e_start="83420" e_stop="83223"/>
          <exon e_start="81263" e_stop="81070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCACTTCTATTTACGGGTGCAGGTATATTTTTACAAGCTTGATATACTATCTTCGTAGGTTAAGGATAGTCACAAATATGATATTTTAGACTTATAACTGTCAGATGTTCTGTTCTTGATATTTGTAATATTCTAAGTAATACTTTCTGTAGATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAGGTACGGGGTACCCAGTTCCTTAGTGTTCTTTTTCCGACTCTGATTTTCATTTTGCTACGTGAACTTGGTAACTGCTTCATATTCAATTTCTTTCCTCTTACTGTATTTAGTATTGACACATCTTCTGATGGGACACAAAACAGGTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGGGTGAGTACTATCTGGACCCCTTTATCCTCAGCTCTTGTCTTGCCATGCTGTTTAATGATCCATCTAGTTCGTGAGTTTCTCATCTTATATGTATTGAGCTGTCTTACTCACTTTTACATGAGACTGAACAAGTAAATACTTAATAAGAGAGTACTGAAATTAGAATCTTTACAACTATATGTGGATGTGCTGGTGACATGTACTTAGGAGTATATGCCTTTTTCTAGGGCTAACCCATCGGTGGCCCCCTAAAGTTGGCATCAACTTTCACTTAGACACCTGAACTAGACTTTGTTCATTTTTGACATCTCATGTGAGGCTCTGATGTATCATTTAACACTTTTTGCTTTTTGCTGATATGGCATAGTGAGTGTGACTCACTCATTAACAGCGCGTCAGACTCTTTTTCAGCCAATTTTTATTTTATATTTCCTTCTTCTTCCCCATTTTTTCAACCACCATTTTCTCAAGTTTGAACTTCTTCCATGGTGAGATATATTCGATGATGCCACAAACGAGGAATCTAATTTCAAATGTCAGAGCTTTCTCCAAGATTTCCCAAGGATGATGCCCTTCTTCCTCAATTTAATTTGAGGGAAAAAGACTGAAATTTGAAGAAAAAAAAAGAAATTTGGGGAAGAATAAAAAATCATTAAAAAATGAGATAATCTCCTTAAAAGAAACTTAATAATGTGATATGAACACGTACACATTTGTATTTTTAGAAGTTCATTGGATCTTAGATTTTTTCTTTTTTAAGCAATAAAATCTGTAGAATTTTCTTTTAGCAATAAAATTTGCGGAGCTGCAATTATTTGAAAAAATTTGAGTTACACAAGTTCACTGAAGGGGTGTGTGCAGTGAGAAGACCATGAATGGGGTGGGGTTGGGGTGGGATATGCTTCTCCTAAAGATTTTTTAAGGTGATTTAATCCTTTTTAATATTATTTGGGAAGAAATGCCACGTGTCATCGATCCATTAGCCAATTTTTCTAAAAAAATAATAGATAGTTTATTATTTTGAAGAGAACGACAAGTGTCCTCATTTAATTTGACACTTTACACATCATCCGCGAGTGGAACACACTCACCATCATATTTTTGTTGAATGTAAAAAAAGTGCTAAATGACGCATCAGGGCCTCACATGAGGTGTCTAAAATGAACAAAGTCTAGTTCAGGTGTCTAAGTGAAAGTTAATGCCAACTTTAGGGGGCCACCGTTGGGTTAGCTGCTTTTTCTAATGAAAAGAAGGAAAAGTTAAGGATTTACAGTGTCAGGATCGCGAGAAGGGAAGGAGAGATCACCAGCCTGACCCTAGGAGCTCACATCTTTATCAGAGTATATGCCTTTTTTCTAATGAAAAGAAGGAAAAGTTTAGCATTTACGGTATCAGGATCGCGAAGAGGGAAGGAGAGATGACCAGCCTGACTGTAGGAGCTCACATCATTATCTCTAATTGGAAGAAGGAAGTGACCAACTGGAAGTAGTGCTTTCAAATCCAATAAAAGGGTATACTGCTCTTCCAGAAATAAGAGGATGGAGGAAAGAGTGACTTCATAGATGTCTTAATACAAGTCTTTGCTATGTATGCATCGAATTAAAAATGTCAGTCAATCTGGTTCGCCTTAGTATATATATATATATATATATATATATATATATATATATATAACAGTAACAGATTCCCTTTTCTCTTATCCTTTTATCGTCCCACCGCACCCCTGCCTTCCACACCGCTATTGATATCTTTAACCTGAGGTATTATAAATTGAACGCAGTTGTTTTATTGTCGGATAAGAATTTGTATGATTGGTAATCCTACGACTCTGTGATCGTTGCTTTTCTCTTTTTGATGTGACCTCATTATTATTATTTTTATTATTTATCCTACCTGATTATATGATTAGTTGACATTAGTTATCAGAATTGTTTTTGTTTCTTATACTCCTTCATGCAGTGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTA</genome_strand>
        <mrna_strand>TGAAAATCACTTCTATTTACGGGTGCAG..................................................................................................................................ATAAAAGATACGGGGATAGGAATTACACCGCAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCCGGCGGCACTGGGCTTGGCCTTGCAATTTGTAAGAG...............................................................................................................................................GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACATGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAGCAGGATGGTAACCAAGGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGTGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTTTCATGGATGTCAGCATGCAAGGTATAAACTGTTATGAAGTCGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213594" ref_strand="+" ref_description="SGN-E213594 [cLEC-76-E11]">
      <seq>cttgatctggcaagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggctgttatgaatcatgaaatgagaactcccatgcatgcaataattgcactttcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttagcaacgctcatcaacgatgtcttggatctttcaaggctagaggatggaagtcttcaacttgatattggcactttcaatctccatgctttatttagagaggtccatagcttaatcaagcctattgcatctgtgaaaaagctgttcgtcacacttagtttgtcgtcagatttgccggaatatgtaattggggatgaaaaacggttaatgcaaattctcttaaacgttgttggcaatgctgtaaagttctcaaaggaaggcaacgtatcaatctccgcttttgttgcaaaatcagactctttaagagatcctagagcccctgaattttttgctgtgcctagtgaaaatcacttctatttacgggtgcagataaaagatacggggataggaattacaccacaggatattcccaacctgtttagcaagtttacacaaagccaagcgctagcaactacaaattctggtggcactgggcttggtcttgcaatttgtaagaagtttgtgaatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="84818" stop="83105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84518" g_stop="84231" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84230" i_stop="84089" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84088" g_stop="83822" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="555" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83821" i_stop="83692" i_length="130">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83691" g_stop="83564" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="683" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83563" i_stop="83421" i_length="143">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83420" g_stop="83405" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="699" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E213594" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84518" e_stop="84231"/>
          <exon e_start="84088" e_stop="83822"/>
          <exon e_start="83691" e_stop="83564"/>
          <exon e_start="83420" e_stop="83405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAGGTGCCCTTCATCACCCTCTTTTCTTTTTTACTTGCAAATTCTAGATTACCTGTCAGGAAAAAAAGTGTCATTACAGATATTTTGCACTTCAATATGTTTGCTGGACCTGCTGACTGATATATGTGTCTGCTTATTCCTGTAGGTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAGGTATATTTTTACAAGCTTGATATACTATCTTCGTAGGTTAAGGATAGTCACAAATATGATATTTTAGACTTATAACTGTCAGATGTTCTGTTCTTGATATTTGTAATATTCTAAGTAATACTTTCTGTAGATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAGGTACGGGGTACCCAGTTCCTTAGTGTTCTTTTTCCGACTCTGATTTTCATTTTGCTACGTGAACTTGGTAACTGCTTCATATTCAATTTCTTTCCTCTTACTGTATTTAGTATTGACACATCTTCTGATGGGACACAAAACAGGTTTGTGAATCTTATG</genome_strand>
        <mrna_strand>CTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG..............................................................................................................................................GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG..................................................................................................................................ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAA...............................................................................................................................................GTTTGTGAATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618231" ref_strand="+" ref_description="SGN-E618231 [68907]">
      <seq>ctcttgatagacatactattttaaagactacacttgnttgagctaggaaaaacattggcattggaagagtgtgcattatggatgccaacacgtcctggacttgagcttcagctttcttacactttacgtcaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatcatgtcgtgaaaatatcaccaaattctcctgtcgcaaaacttcgacctgctgggaaatacatgcctggtgaggtggttgctgtcagggttccacttctgcatctgtcaaactttcagattgatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcggacagtgcaagacaatggcatgttcatgaactggagcttgttgaagtggtagctgatcaggttgctgttgctctttcacatgctgctattttagaagaatcaatgagggctagggatcttcttatggagcagaatgtggctcttgatctggcgagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggcggttatgaatcatgaaatgagaactcccatgcatgcgataattgcactatcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttaagcaacgctcatcaatgatgtcttgcgatctttcgcaggtagaggatggaagtcttcaactttgatattgggcacttttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="86735" stop="83951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86435" g_stop="85999" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84599" g_stop="84251" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="791" r_length="353" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E618231" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86435" e_stop="85999"/>
          <exon e_start="84599" e_stop="84251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGATAGACATACTATTTTAAAGACTACACTTG-TTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTT-AGCAACGCTCATCAACGATGTCTTG-GATCTTTCAAGGCTAGAGGATGGAAGTCTTCAAC-TTGATATT-GGCACTTTCAATC</genome_strand>
        <mrna_strand>CTCTTGATAGACATACTATTTTAAAGACTACACTTGNTTGAGCTAGGAAAAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTCCTGGACTTGAGCTTCAGCTTTCTTACACTTTACGTCACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAAACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCAAACTTTCAGATTGATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCGGACAGTGCAAGACAATGGCATGTTCATGAACTGGAGCTTGTTGAAGTGGTAGCTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTCACATGCTGCTATTTTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCGAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCGGTTATGAATCATGAAATGAGAACTCCCATGCATGCGATAATTGCACTATCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAAGCAACGCTCATCAATGATGTCTTGCGATCTTTCGCAGGTAGAGGATGGAAGTCTTCAACTTTGATATTGGGCACTTTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257157" ref_strand="+" ref_description="SGN-E257157 [cLEG-46-O5]">
      <seq>tgtcgaactttcagattaatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcagaacagtgcaagacaattggcatgttcatgagcttggagcttgttgaagtggtagcttgatcaggttgctgttgctcttttccatgctgctatatttagaagaatcaatgagggctagggatctttcttatggagcagaatgtggcttcttgatctggcaagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggctgttatgaatcatgaaatgagaactcccatgcatgcaataattgcactttcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttagcaacgctcatcaacgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="86435" stop="84008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86135" g_stop="85999" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399">
            <donor d_prob="0.999" d_score="0.87"/>
            <acceptor a_prob="0.959" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84599" g_stop="84308" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="436" r_length="295" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E257157" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86135" e_stop="85999"/>
          <exon e_start="84599" e_stop="84308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAG-ACAGTGCAAGACAA-TGGCATGTTCATGAGC-TGGAGCTTGTTGAAGTGGTAGC-TGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATA-TTAGAAGAATCAATGAGGGCTAGGGATC-TTCTTATGGAGCAGAATGTGGC-TCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCT</genome_strand>
        <mrna_strand>TGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGAACAGTGCAAGACAATTGGCATGTTCATGAGCTTGGAGCTTGTTGAAGTGGTAGCTTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTTCCATGCTGCTATATTTAGAAGAATCAATGAGGGCTAGGGATCTTTCTTATGGAGCAGAATGTGGCTTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408620" ref_strand="+" ref_description="SGN-E408620 [PPI-11-N3]">
      <seq>attggaagagtgtgcattatggatgccaacacgtcctggacttgagcttcagctttcttacactttacgtcaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatcatgtcgtgaaaatatcaccaaattctcctgtcgcaaaacttcgacctgctgggaaatacatgcctggtgaggtggttgctgtcagggttccacttctgcatctgtcaaactttcagattaatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcggacagtgcaagacaatggcatgttcatgagctggagcttgttgaagtggtagctgatcaggttgctgttgctctttcacatgctgctattttagaagaatcaatgagggctagggatcttcttatggagcagaatgtggctcttgatctggcgagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggcggttatgaatcatgaaatgagaactcccatgncatgcgatattgcactatcttccttactacaagaaactgatctaactccagagcaacgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="86677" stop="84066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86377" g_stop="85999" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84599" g_stop="84366" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="613" r_length="234" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E408620" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86377" e_stop="85999"/>
          <exon e_start="84599" e_stop="84366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATG-CATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTG</genome_strand>
        <mrna_strand>ATTGGAAGAGTGTGCATTATGGATGCCAACACGTCCTGGACTTGAGCTTCAGCTTTCTTACACTTTACGTCACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAAACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCAAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCGGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTCACATGCTGCTATTTTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCGAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCGGTTATGAATCATGAAATGAGAACTCCCATGNCATGCGAT-ATTGCACTATCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421842" ref_strand="+" ref_description="SGN-E421842 [STM-33-D13]">
      <seq>attggaagagtgtgcattatggatgccaacacgtcctggacttgagcttcagctttcttacactttacgtgaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatgatgtggtgaaaatgtcaccgaattctgctgtcgcgagacttggacctgctgggaaatacatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="86677" stop="85873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86377" g_stop="86173" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E421842" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86377" e_stop="86173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCT</genome_strand>
        <mrna_strand>ATTGGAAGAGTGTGCATTATGGATGCCAACACGTCCTGGACTTGAGCTTCAGCTTTCTTACACTTTACGTGACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATGATGTGGTGAAAATGTCACCGAATTCTGCTGTCGCGAGACTTGGACCTGCTGGGAAATACATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558503" ref_strand="-" ref_description="SGN-E558503 [17852]">
      <seq>tttttttttttttttgccacgatgggatctcttctccggatgaatcgccttttatcttccatcgtggagtcatgtaactgcatcatcgacccacagttgcctgccgacgacttgctaatgaagtatcagtacatttctgattttttcatagcacttgcttatttctccattccagtggagttgatatacttcgttaagaagtctgctgtctttccatatagatgggttcttgtgcagttcggtgctttcatagttctttgtggaaagacagcagacttcttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91248" stop="86404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90948" g_stop="90898" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90897" i_stop="86917" i_length="3981">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86916" g_stop="86704" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="264" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E558503" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558503" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90948" e_stop="90898"/>
          <exon e_start="86916" e_stop="86704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTTGTAAGTCTCATAAACCCTAACTAGTTTTTTTTAGTTTTTTTTGCTAATTTTGACTTTTAATTGCTGAAAAATAGTCTTATTGAAGTGTTTTTTTAGGTTTACTTGTTGTTAATTAGCTTCACTTGTGATAATGTATTTAAAGTTCGTGATGAATCGTTTTGAATGTTGAATTTCAGCTCATTTTTGTAGATTGTTTTGTTTATAATAACGATTGATTTTTGGTGATTAACTAGCTGAAATTGATTAATTTACAATAAACTAAACTGAATAAATTGAAGTTTCCAGGCAGTAACTGAGGTTTGGTTTTTCATGGAGCAAGGTTATTAGTTTTTGGATAGTGGGGTTTGGAATGATTAATGTATAAATGAACTGAAATTGCAACCAATTAATGATTTTTAGAGTTTATTTGCTTTTGTTGTGATGATGTCTTCATGATTATGATCATTCTTTTTTTGGAATATGTTCTTATGGGTTGAGTTTGTGGGATGAATGTAAAGTTCAACTCATTTGCGCATGTTCTTTTTATTTATCCCCGTAAGACTGATTTCGGTGTTTAACTAGCTCAGATTAGTTAGTCTACAACTACATGCCAAGTGTAATCCGACAAAATGGGATCTAGGGAAGTAAGAGTGTAAGCAGACCTTATCAGTTATCCCTACCTTACCACAAATGAGATTTGGGATAAGATGTGTATCCGTCATCTCTAGTGGTTCACTATCTGAGGAATAATTCATGGAAGAAGCCTATAGTAAACACATTCGCTAAACATATCTCAAGGTGGTATGAAAGAAGAAATAAATGAAGATTAAAGGCATGTGAGAGTGATAAAAACAAACCAAAAGTTGTTAATGGGGAAGAGTTCAAATTGAGAAATAATTTCATGTGTTAAGTATGCACAAGAAAAATATGTCACATGCGGTGAAAACTTTGCACTAACCGCATGTGCCACAGTTTTCCCAAGTTAAGAGAATCTAATACTAGTAAAATATAACTCAAACAAATTCAAACCATCAAAAAATGGGGAAGTGAACATTTAAACGAATAATATCGAGGATGTTACATACTAATAAAATGAGCATAATATTTGGATGATGAATAATATCTTTGAAGTGCTGAATAATGATTGTATGACTATCACTCTGGGGAAACAAATTATTCTGAAATGCTTTGTCACTGAAAGTGAATATGACGTCATTGAAATTTGGAGGATCTAAGTAGATTCATGCTTTCTTACATCATATGTTCTTTTCTATTGTAATGTTGGTTTCTATAGCATCATTATATTGCTCAAATTTATTTCACAGTTCTAACCACATAACCTATTTTCAGAATTTGTATTTGTTTTGTCCCACAAAATAATGAACATTAAGACCAAGCATGTGCATGTCATACGTTCGGTAACGTGTACATTTTGCCTTTTTTTTCCTTTTTAAAGAGGTCATGGGCTTCGTCATTATTAATACAAAATGGACAAAGACACGTGAATGATATGCTCTAGTAAATATGCTCCTCATTAACCATAGGCAGCTCTAGTAACAGTAGATGTTTAGAAGAAGGAACACATCAAACCAAGATATCAAGAAGAAAAAAGTGACCAAATCCGTCCCTAAATATTTTCTTTCTTTATTGTCTATATATGTATATATTTTATGACATCCAATAATAATAAATGTTAGCGTAGATGGTCAAGACCTCATAATTTATTTTTGATGAAGAGACCTCATAATTTATTTTGTGAACACGATTCATACGTTCTAGTGTATTTAGCCATTGGTTGATGCATAAGACAAAAATTCTTGTTGTTTGTCGTTCACCACATGTGAAAATCAAATTATAGATAATGAAAATCAGATTATAGATGACTATTGAACAGATGAAGAACTACAAAATAGATGTAAATATGATTCTTTTACTTATCCTCCGTAGATGCCATAAAAATCAAGTACTCAGTTCAAGTTTTTAAAATAAATCATTAGAAGTAGGAAAACATTAGCTAGACTTAACAGTTTAAATTTTTGCTTCTTCTTGAAGGACTTAGTGTGGGGCTTCCATCGTTTTTTGTGAGAAATCTCCTGAAAATGAAGGTGAAATTGGCATTGTTAATAATACCATGTTTAGGATAATGTAAGGTGGCAACTATTCATTGGGAGAAATTATTGTCAAAGCGGTTTCTTTTCTTCCGTTGGCTGCATTAGGTGTCTTTTGAAGTAGGTTATAGGTGTCTTTTGAAGTAGGTTATTTAGGTTAGGGATATTTAGGTAATAACTTTTAAGTTTTTGAGTTCATGCTTTCAGTATAATATAGATCGGTCTCTAACCATATTTTTACTTGTGATCAAGCCATAGATACCGGTAAGAAGAGAAATAGATGATAAAAATGATAATTATAATTTTTTTTTGTATAACAAGCTGTTCGTTTTCTATTTAATTCATAGAAAATATATGTTCTTGGGAGTCCCTGATGGTTAAATACAACAAGATTCACCATGACTGCTACTTTAGAGAAACACTTGAGTGAAAGCCTATAAAATTGCATCTGTAACTGGATACCTACATTGAAAACCATCGTTCACGCTTCGATTTTGATCATTTTGGACTAGCAGCACTATCCTTGTATACTAGACAGGCTACTGTGATCATATTCTCTCTGCTATGATCAATAATGGGCTCAGAAAGCAGCTCTAATATTAATTGCAATAAACTAAACTTGCAATCTATAGAGAGAAAAGGAAAAGTTCATTTAATTGGTAAAATTGTGTAAAGCTCTCAGTACAATAATTCAAAAGGGAGATGATACAAGAGAAAGGGATTAAGAGGCAACTCCATCAACTGAGTTTTGTTTACCCAATGATTGATTTCATGCCAGAATGAATCGAGGAAACAAGGATGTCTATAATGTCAACAATCCCTCCACTCCTGCAGGAAGGTGAAAGGAGAGAAACTGGGAGAGGAAGAAAAGAGGAACTTTACCACTCCTCTGTTCTAATCTATGTGAAGGTGTTTGACTGTGCTCGACGTTTAAGAATGAAAGGAAGACTTTTGAGACTTGTTGTTCAAAGTAAGCCATTGTTAAGGGTAAAATGTGAAATTTAAAGTTTAATTGTTACTAAATATAGAAATATGTCTCTTTTTGGGGCTTATTTTAAAGGAAAGAGTGTCACATTAATTGGGACAAAGGGATGCATTTTCTGTCCAAAATTAAGATGTATATACTTAGATGCAAGTGGCACCATAGATCTGGTACTACCAAAAGGTATCCAATTAATCCATGCTTGGCCTCCCATTACAATGCCTGTAAGAAATAATTGTTCTTTCCACCTCCACAACTAATTGTCGAACTATTATATCTATCTTTATTCCCTTAAATGTGAAACGAATTACACAGACTATTTGGCGCTACTTTTTTCCTAGATATATTGAAGACCTAGTTTCTTATATTTGTGGGAAGCATTTGGAATTTTCTATAAGAACTATATCATGTTCGAAAACATTCTTATAATTTTCGACAAGATTGCTGAAGGAGTGTCTTATCTTTTATGTATTCTTGACTAGAGGAGTTTAATAAAAAGAAAATAGAAAGGAACAAAGAAACGTACAAGTGTATAAAAGGAGTTGGGGCAAAGACATCAGAAACATTTAGACCTACGATTTCATCCTACATGTTATGGTTTTAGTTCGTTAGAGGTTTTAACATATTAAATCAGCAAAGTTGTGACATACATAAAGTGCATAACATAAAGATGAAATTCACAATTTGCTGATCTTTTGGTGCAAGGGAACTATTTTTTACACTATAAGTTAGCTGTTAATTTCAATATTGGCTTCTTCTACACCTTGTTGTTCTTGAGTATAATTCTATTTTCACAAACATATGTCAGAACTTATGCTGCAATTAAATATATTCAGGTTGTTTAACTCTTGTACAGCTTGTTATTCTTCTGAGGCATATTTCCTTCTCCTTATTTGCTAACTTGTGCTGCAGTTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTTCCATCGTGGAGTCATGTAACTGCATCATCGACCCACAGTTGCCTGCCGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688528" ref_strand="+" ref_description="SGN-E688528 [t3_tus_50_n05]">
      <seq>aagaatcacaaaaaccctcaacactcttaattacctcttcttcttacaagtctactaatatccctaacttttcaacaaaaaaaaaaacatgacacaagaagaaaaagttgtacttttaaattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaaaaaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgaaatttgaaaaaataattctcccttattgccctatgaaccttatcaaaaagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaaaagcaagaaaatggcaagaaagaacttgtaaaatgttcaaagtttttggaaaaaaaacttgaagataaactttattttggaggagatgtatttggatttgtaaacattgcacttgttcctttctacaattggttcattgtcttcaagacctttgcaaatttcaacacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91977" stop="93726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92277" g_stop="92685" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.242" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93426" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="623" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E688528" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92277" e_stop="92685"/>
          <exon e_start="93213" e_stop="93426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTG</genome_strand>
        <mrna_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAAAAGTTGTACTTTTAAATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAAAAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAAATTTGAAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAAAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAAAGCAAGAAAATGGCAAGAAAGAACTTGTAAAATGTTCAAAGTTTTTGGAAAAAAAACTTGAAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAAACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550821" ref_strand="+" ref_description="SGN-E550821 [TUS-50-N5]">
      <seq>aagaatcacaaaaaccctcaacactcttaattacctcttcttcttacaagtctactaatatccctaacttttcaacaaaaaaaaaaacatgacacaagaagaaaaagttgtacttttaaattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaaaaaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgaaatttgaaaaaataattctcccttattgccctatgaaccttatcaaaaagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaaaagcaagaaaatggcaagaaagaacttgtaaaatgttcaaagtttttggaaaaaaaacttgaagataaactttattttggaggagatgtatttggatttgtaaacattgcacttgttcctttctacaattggttcattgtcttcaagacctttgcaaatttcaacacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91977" stop="93724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92277" g_stop="92685" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.242" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93424" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="621" r_length="212" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E550821" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92277" e_stop="92685"/>
          <exon e_start="93213" e_stop="93424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAAT</genome_strand>
        <mrna_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAAAAGTTGTACTTTTAAATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAAAAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAAATTTGAAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAAAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAAAGCAAGAAAATGGCAAGAAAGAACTTGTAAAATGTTCAAAGTTTTTGGAAAAAAAACTTGAAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAAACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213686" ref_strand="+" ref_description="SGN-E213686 [cLEC-76-H9]">
      <seq>agaatcacaaaaaccctcaacactcttaattacctcttcttcttacaagtctactaatatccctaacttttcaacaaaaaaaaaaacatgacacaagaagaagaagttgtacttttagattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaataaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgagatttggaaaaataattctcccttattgccctatgaaccttatcaaagagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaagagcaagaaaatggcaagaaagaacttgtagaatgttcaaagtttttggaagaagaacttggagataaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttctacaattggttcattgtcttcaagacctttggcaattcaacacaattggaatacaatgccccaagttagtgatgtggggagaaaggtgtttgaatagagactcagtatccaagtcactccctacttcaatcaagtctaccagcttatttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91978" stop="93835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92278" g_stop="92685" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93535" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="728" r_length="320" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E213686" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92278" e_stop="92685"/>
          <exon e_start="93213" e_stop="93535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTT</genome_strand>
        <mrna_strand>AGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGGCAA-TTCAACACAATTGGAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTCCCTACTTC-AATCAAGTCTACC-AGCTTATTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211847" ref_strand="+" ref_description="SGN-E211847 [cLEC-66-H4]">
      <seq>agaatcacaaaaaccctcaacactcttaattacctcttcttcttacaagtctactaatatccctaacttttcaacaaaaaaaaaaacatgacacaagaagaagaagttgtacttttagattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaataaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgagatttggaaaaataattctcccttattgccctatgaaccttatcaaagagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaagagcaagaaaatggcaagaaagaacttgtagaatgttcaaagtttttggaagaagaacttggagataaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="91978" stop="93678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92278" g_stop="92685" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93378" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="574" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E211847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92278" e_stop="92685"/>
          <exon e_start="93213" e_stop="93378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCT</genome_strand>
        <mrna_strand>AGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606942" ref_strand="+" ref_description="SGN-E606942 [22897]">
      <seq>ctcttcctttgatatatcccatatttccaaaaaagcatgacacaagaagaagaagttgtacttttagattataggcctagtccttttggaacaatggcaagaattgccctagttgaaaaaggagtcaactacatccacaagtttgaggattagtctaagaaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcataagggtaaatctatttgtgaatcaaatatcataattcaatatattgatgagatttggaaaaacaattttcccttattgccctctgaaccttatcaaagagcaaaagctaggttcttggttgacttcatcaacaagaaggtacatgggtcaagtgtaaaggtatggatggggaaaaatgaagagcaagaaaatggtaagaaagaacttgtagaatggtcaaagtttttggaagaagaacttggagacaaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttctacaattggtttattgtcttcaagacctttgcaaatttcaacacaattgaaatagaatgtcccaagttagtgatgtggggagaaaggtgtttcaaaagagactcagtatccaagtcacttcctacttcagatcaagtctatcaagcttatttggaattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="92057" stop="93839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92357" g_stop="92685" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="357" r_length="329" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.242" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93539" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="684" r_length="327" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E606942" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92357" e_stop="92685"/>
          <exon e_start="93213" e_stop="93539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAG</genome_strand>
        <mrna_strand>AAAAAAGCATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATAGGCCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAAGGAGTCAACTACATCCACAAGTTTGAGGATTAGTCTAAGAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCATAAGGGTAAATCTATTTGTGAATCAAATATCATAATTCAATATATTGATGAGATTTGGAAAAACAATTTTCCCTTATTGCCCTCTGAACCTTATCAAAGAGCAAAAGCTAGGTTCTTGGTTGACTTCATCAACAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGAAAAATGAAGAGCAAGAAAATGGTAAGAAAGAACTTGTAGAATGGTCAAAGTTTTTGGAAGAAGAACTTGGAGACAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTTATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATAGAATGTCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTCAAAAGAGACTCAGTATCCAAGTCACTTCCTACTTCAGATCAAGTCTATCAAGCTTATTTGGAATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722487" ref_strand="+" ref_description="SGN-E722487 [FC17BF11]">
      <seq>gattggcggccaatcggccgaattgacatgacacaagaagaagaagttgtacttttagattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaataaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgagatttggaaaaataattctcccttattgccctatgaaccttatcaaagagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaagagcaagaaaatggcaagaaagaacttgtagaatgttcaaagtttttggaagaagaacttggagataaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttctacaattggttcattgtcttcaagacctttgcaaatttcaacacaattgaaatacaatgccccaagttagtgatgtggggagaaaggtgtttgaatagagactcagtatccaagtcacttcctacttcaaatcaagtctaccaagcttatttggatttcaagaaaggttggtgatcacatggttaataaatatcgagatggattcagaattttatattttaatgattggatatcatatcacttattttgagatgggatcatataatgagttgtgagagggtctaataatttaacgtctaccttattagtcgatacatttgcatattgaagtaacgtaaatgataaatatgaatattaattgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="92063" stop="94043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92365" g_stop="92685" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="348" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93213" g_stop="93743" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="879" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E722487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92365" e_stop="92685"/>
          <exon e_start="93213" e_stop="93743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAA</genome_strand>
        <mrna_strand>ATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297265" ref_strand="+" ref_description="SGN-E297265 [cLET-29-E2]">
      <seq>gcaaattgaagagcaagaaaatggcaagaaagaacttgtagaatgttcaaagtttttggaagaagaacttggagataaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttctacaattggttcattgtcttcaagacctttgcgaatttcaacacaattgaaatacaatgccccaagttagtgatgtggggagaaaggtgtttgaatagagactcagtatccaagtcacttcctacttcaaatcaagtctaccaagcttatttggatttcaagaaaggctggtgatcacatggttaataaatatcgagatggattcacaattttatattttaatgattggatatcatatcacttattttgagatgggatcatataatgagttgtgagagggtctaataatttaacgtctaccttattagtcgatacatttgcatattgaagtaacgtaaatgataaatatgaatattaattgataaaaagtgtatttatttgaaagaacatgagttcactatctatgtattcatcttccttggaataatactagtcggtaccattaaatggtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="92945" stop="94132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93245" g_stop="93841" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E297265" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93245" e_stop="93841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATATGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGTAATAATACTAGTCGATACGATTAAATGTTGAAATCACGTAAA</genome_strand>
        <mrna_strand>GCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCGAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGCTGGTGATCACATGGTTAATAAATATCGAGATGGATTCACAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATTTGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGGAATAATACTAGTCGGTACCATTAAATGGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723341" ref_strand="+" ref_description="SGN-E723341 [FC20AH03]">
      <seq>tcggccgaattggttcatcacatatatccatttaaatttcatctagtatatatcttttaattatatcaaacaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcgttctattcgtataaacagacttgatgaagttcagctatgaagatattgttacgtatgatagttggtatgttttattttttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94314" stop="96316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94607" g_stop="94992" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="96016" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="858" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E723341" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94607" e_stop="94992"/>
          <exon e_start="95546" e_stop="96016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAAGT-GTTCATCACATATATATATTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAA</genome_strand>
        <mrna_strand>TCGGCCGAATTGGTTCATCACATATATCCATTTAAATTTCATCTAGTATATATCTTTTAATTATATCAAACAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722654" ref_strand="+" ref_description="SGN-E722654 [FC17DF10]">
      <seq>gggcgattggcggccaatcggccgaattgatcacatatatatattttaatttcatctagtatatatcttttaattatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcgttctattcgtataaacagacttgatgaagttcagctatgaagatattgttacgtatgatagttggtatgttttattttttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94319" stop="96315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94622" g_stop="94992" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="400" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="96015" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="870" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E722654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94622" e_stop="94992"/>
          <exon e_start="95546" e_stop="96015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATATATATATTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAA</genome_strand>
        <mrna_strand>ATCACATATATATATTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723135" ref_strand="+" ref_description="SGN-E723135 [FC19CA11]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgacgatatatatatattttaatttcatctagtatatatcttttacttatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcgttctattcgtataaacagacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94316" stop="96258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94627" g_stop="94992" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="413" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95958" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="826" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E723135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94627" e_stop="94992"/>
          <exon e_start="95546" e_stop="95958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATG</genome_strand>
        <mrna_strand>ATATATATATTTTAATTTCATCTAGTATATATCTTTTACTTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427868" ref_strand="+" ref_description="SGN-E427868 [STM-49-A24]">
      <seq>ctttaatttcatctagtacatcttttaattagcaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggcaagaattgcattagatgaaaaagggattaaatatgaatacaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcacttataattgttgagtatatagatgaggtttggaaggataaatctcctttgatgccatgtgatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctatagttggttccctacttttgagaaatttgggaattttaacatagaaaaagtgtgtccaaagtttgtggcatgggccaacaaatgtatgcataaagatagtgtctccaaatcactagcggagccaaataaagtttatgagtacgtgttaaaattgaaacacaacttggccttccatangtcttttcgttctattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94352" stop="96189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94636" g_stop="94992" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95886" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="692" r_length="340" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E427868" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94636" e_stop="94992"/>
          <exon e_start="95546" e_stop="95886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCC</genome_strand>
        <mrna_strand>CTTTAATTTCATCTAG--TACATCTTTTAA-T-TAGC-AAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGCAAGAATTGCATTAGATGAAAAAGGGATTAAATATGAATACAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTATATAGATGAGGTTTGGAAGGATAAATCTCCTTTGATGCCATGTGATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCTACTTTTGAGAAATTTGGGAATTTTAACATAGAAAAAGTGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATGCATAAAGATAGTGTCTCCAAATCACTAGCGGAGCCAAATAAAGTTTATGAGTACGTGTTAAAATTGAAAC-ACAACTTGGCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252283" ref_strand="+" ref_description="SGN-E252283 [cLEG-12-F9]">
      <seq>taatttcatctagtatatatcttttaattatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94339" stop="96054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94639" g_stop="94992" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95754" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="563" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E252283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94639" e_stop="94992"/>
          <exon e_start="95546" e_stop="95754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACAT</genome_strand>
        <mrna_strand>TAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369838" ref_strand="+" ref_description="SGN-E369838 [TUS-25-M21]">
      <seq>tcatctagtatatatcttttaattatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaatttttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94344" stop="96111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94644" g_stop="94992" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95811" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="616" r_length="267" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E369838" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94644" e_stop="94992"/>
          <exon e_start="95546" e_stop="95811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAA-TTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAG</genome_strand>
        <mrna_strand>TCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477850" ref_strand="+" ref_description="SGN-E477850 [cSTD-1-P2]">
      <seq>ctttaattttacatcttttaattagcaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggcaagaattgcattagatgaaaaagggattaaatatgaatacaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcactcataattgttgagtatatagatgaagtttggaaggacaaatctcctttgatgccttctgatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattntaacatagaaaaagtgtgtccaaagtttgtggcatgggccaacaaatgtatgcataaagatagtgtctccaaatctcttgcggagccaaataaagttnatgaagtacgtgttaaaattgaaacaacaacttggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94347" stop="96183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94645" g_stop="94992" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95883" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="684" r_length="339" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E477850" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94645" e_stop="94992"/>
          <exon e_start="95546" e_stop="95883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATG-AGTATGTGTTAAAAATGAAACAACACCTTGGCCT</genome_strand>
        <mrna_strand>CTTTAATTTTACATCTTTTAATTA--GCAAAAA-TGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGCAAGAATTGCATTAGATGAAAAAGGGATTAAATATGAATACAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTCATAATTGTTGAGTATATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTCTGATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTNTAACATAGAAAAAGTGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATGCATAAAGATAGTGTCTCCAAATCTCTTGCGGAGCCAAATAAAGTTNATGAAGTACGTGTTAAAATTGAAACAACAACTTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251133" ref_strand="+" ref_description="SGN-E251133 [cLEG-10-K19]">
      <seq>tagtatatatcttttaattatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94349" stop="96033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94649" g_stop="94992" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95733" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="532" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E251133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94649" e_stop="94992"/>
          <exon e_start="95546" e_stop="95733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGA</genome_strand>
        <mrna_strand>TAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255403" ref_strand="+" ref_description="SGN-E255403 [cLEG-30-B14]">
      <seq>tatcttttaattatatcaaaaaatgagtaatgaagtggttctttcgagtgcttatgtgagtatgtgagctctgagggtaagaattgcatcacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94356" stop="95980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94656" g_stop="94992" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95680" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="472" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E255403" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94656" e_stop="94992"/>
          <exon e_start="95546" e_stop="95680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTT</genome_strand>
        <mrna_strand>TATCTTTTAATTATATCAAAAAATGAGTAATGAAGTGGTTCTTTCGAGTGCTTATGTGAGTATGTGAGCTCTGAGGGTAAGAATTGCATCACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478449" ref_strand="+" ref_description="SGN-E478449 [cSTD-4-P14]">
      <seq>attagcaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggcaagaattgcattagatgaaaaagggattaaatatgaatacaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcacttataattgttgagtatatagatgaggtttggaaggataaatctnctttgatgccatgtgatccttataagaaggctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94369" stop="95260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94668" g_stop="94959" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E478449" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94668" e_stop="94959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAA</genome_strand>
        <mrna_strand>ATTAGCAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGCAAGAATTGCATTAGATGAAAAAGGGATTAAATATGAATACAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTATATAGATGAGGTTTGGAAGGATAAATCTNCTTTGATGCCATGTGATCCTTATAAGAAGGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481581" ref_strand="+" ref_description="SGN-E481581 [cSTD-18-P5]">
      <seq>gagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggcaagaattgcattagatgaaaaagggattaaatatgaatacaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcactcataattgttgagtatatagatgaagtttggaaggacaaatctcctttgatgccttctgatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94380" stop="96013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94680" g_stop="94992" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95713" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="481" r_length="168" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E481581" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94680" e_stop="94992"/>
          <exon e_start="95546" e_stop="95713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTAT</genome_strand>
        <mrna_strand>GAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGCAAGAATTGCATTAGATGAAAAAGGGATTAAATATGAATACAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTCATAATTGTTGAGTATATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTCTGATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479398" ref_strand="+" ref_description="SGN-E479398 [cSTD-9-B14]">
      <seq>gtctcgagttgttcttttgagtgcttctgtgagtatgtttggtatgagggccaagaattgcatttagatgaataaagggcttaaatatgaataccaaagagtgagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcactcataattgttgagtatatagatgaagtttggaaggacaaatctcctttgatgccttctgatccttataagaaggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagaacaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagaaaaagtgtgtccaaagtttgtggcatgggccaacaaatgtatgcataaagatagtgtctccaaatctcttgcggagccaaataaagtttatgaagtacgtgttaaaattgaaacaacaacttggccttccatangtctttttcgttgtattcgtaccaacagacttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94389" stop="96189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94682" g_stop="94992" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95886" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="656" r_length="342" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E479398" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94682" e_stop="94992"/>
          <exon e_start="95546" e_stop="95886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGG-TAAGAATTGCA-TTACATGAA-AAAGGGATTCAATATGAATA-TAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATG-AGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCC</genome_strand>
        <mrna_strand>GTC-TCGAGTTGTTCTTTTGAGTGCTTCTGTGAGTATGTTTGGTATGAGGGCCAAGAATTGCATTTAGATGAATAAAGGGCTTAAATATGAATACCAAAGAGTGAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTCATAATTGTTGAGTATATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTCTGATCCTTATAAGAAGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGAACAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAAAAAGTGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATGCATAAAGATAGTGTCTCCAAATCTCTTGCGGAGCCAAATAAAGTTTATGAAGTACGTGTTAAAATTGAAACAACAACTTGGCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482330" ref_strand="+" ref_description="SGN-E482330 [cSTD-21-J8]">
      <seq>gttgttcttttgagtgcttatgtgagtatgtttggtatgagggcaagaattgcattagatgaaaaagggattaaatatgaatacaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcactcataattgttgagtatatagatgaagtttggaaggacaaatctcctttgatgccttctgatccttataagagggctcaagctaagttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94390" stop="96053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94690" g_stop="94992" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95753" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="511" r_length="208" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E482330" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94690" e_stop="94992"/>
          <exon e_start="95546" e_stop="95753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACA</genome_strand>
        <mrna_strand>GTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGCAAGAATTGCATTAGATGAAAAAGGGATTAAATATGAATACAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTCATAATTGTTGAGTATATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTCTGATCCTTATAAGAGGGCTCAAGCTAAGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276796" ref_strand="+" ref_description="SGN-E276796 [cLEN-14-A2]">
      <seq>ttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94407" stop="96232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94707" g_stop="94992" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95932" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="673" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E276796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94707" e_stop="94992"/>
          <exon e_start="95546" e_stop="95932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCG</genome_strand>
        <mrna_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276797" ref_strand="+" ref_description="SGN-E276797 [cLEN-14-A4]">
      <seq>ttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggcctttcctagagaaatatatgaagaagcgcgctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94407" stop="96218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94707" g_stop="94992" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95918" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="659" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E276797" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94707" e_stop="94992"/>
          <exon e_start="95546" e_stop="95918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATA</genome_strand>
        <mrna_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTTCCTAGAGAAATATATGAAGAAGCGCGCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274666" ref_strand="+" ref_description="SGN-E274666 [cLEN-13-A2]">
      <seq>ttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94407" stop="96170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94707" g_stop="94992" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95870" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="611" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E274666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94707" e_stop="94992"/>
          <exon e_start="95546" e_stop="95870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAAC</genome_strand>
        <mrna_strand>TTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427869" ref_strand="-" ref_description="SGN-E427869 [STM-49-A24]">
      <seq>gcattagatgaaaaagggattaaatatgaatccaaagaggaagatttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcacttataattgttgagtatatagatgaggtttggaaggataaatctcctttgatgccatgtgatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcagccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatggagaaaattttgggtttgtggatttggctttaattcctttctatagttggttccctacttttgagaaatttgggaattttaacatagaaaaagtgtgtccaaagtttgtggcatgggccaacaaatgtatgcataaagatagtgtctccaaatcactagcggagccaaataaagtttatgagtacgtgttaaaattgaaacaacaacttggccttccataggtcttttcgttctattcgtacaaatagacttgatggagttaagctgtaaggatgttatgtgtgttagttattatgttttttctttctgaaaattttcgaggtagttataaaataaatgttgtttatctatatttatgtatatataaagaatgagtttgagtttttattatgctaccctcggggtttngttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94441" stop="96307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94741" g_stop="94992" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95890" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="597" r_length="345" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95891" i_stop="95923" i_length="33">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95924" g_stop="96059" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="731" r_length="134" r_score="0.794"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E427869" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94741" e_stop="94992"/>
          <exon e_start="95546" e_stop="95890"/>
          <exon e_start="95924" e_stop="96059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTAT-TTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTT</genome_strand>
        <mrna_strand>GCATTAGATGAAAAAGGGATTAAATATGAATCCAAAGAGGAAGATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTATATAGATGAGGTTTGGAAGGATAAATCTCCTTTGATGCCATGTGATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCAGCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGGAGAAAATTTTGGGTTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCTACTTTTGAGAAATTTGGGAATTTTAACATAGAAAAAGTGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATGCATAAAGATAGTGTCTCCAAATCACTAGCGGAGCCAAATAAAGTTTATGAGTACGTGTTAAAATTGAAACAACAACTTGGCCTTCCATAG.................................GTCTTTTCGTTCTATTCGTACAAATAGACTTGATGGAGTTAAGCTGT-AAG-GA-TGTTATGTGTGTTAGTTATTATGTTTTTTCTTTCTGAAAATTTTCGAGGTAGTTATAAAATAAATGTTGTTTATCTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478406" ref_strand="+" ref_description="SGN-E478406 [cSTD-4-N17]">
      <seq>atttgagtaataaaagttcacttttactacaaatgaatccaattcataagaaaattccagtgttgattcataatggaaaaccaatttgtgagtcactcataattgttgagtatatagatgaagtttggaaggacaaatctcctttgatgccttctgatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtttacgagagtggaaggagaatatggactacaaaaggggaagatcaagaagcatccaagaaagaattcatagagtgcctaaagttattggaaggagagttaggagataagccatatttcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94484" stop="95970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94784" g_stop="94992" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="95670" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="334" r_length="125" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E478406" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94784" e_stop="94992"/>
          <exon e_start="95546" e_stop="95670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGG</genome_strand>
        <mrna_strand>ATTTGAGTAATAAAAGTTCACTTTTACTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTGATTCATAATGGAAAACCAATTTGTGAGTCACTCATAATTGTTGAGTATATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTCTGATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGAGAGTGGAAGGAGAATATGGACTACAAAAGGGGAAGATCAAGAAGCATCCAAGAAAGAATTCATAGAGTGCCTAAAGTTATTGGAAGGAGAGTTAGGAGATAAGCCATATTTCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369837" ref_strand="+" ref_description="SGN-E369837 [TUS-25-M21](-)">
      <seq>aaaaccaatttgtgagtcacttataattgntgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattgaaaggagaattagaagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcgttctattcgtataaacagacttgatgaagttcagctatgaagatattgttacgtatgatagttggtatgttttattttttgaaaagttatggagttgtcatagaataaatgttgttaatctatacttgtttttacggtatgctattaagggatggatgtcttcttggtgtaataaaactactttaggtagaaaggagattttataatattataaaacttttattgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="94560" stop="96459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94860" g_stop="94992" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95546" g_stop="96156" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="744" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E369837" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94860" e_stop="94992"/>
          <exon e_start="95546" e_stop="96156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</genome_strand>
        <mrna_strand>AAAACCAATTTGTGAGTCACTTATAATTGNTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGAAAGGAGAATTAGAAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591779" ref_strand="+" ref_description="SGN-E591779 [45498]">
      <seq>gccattcttcccctgctaccaatagagatcctaactttctccattcccacgtttacgccaactcttctgatgttctgctgcataggagacttgaactgcattttcttctgaagacttcttctcaagacactgttgagcttcttactggctgtcttaagctctttaggactgtcctgtgaagttggttcaggtaagcattttgaatcaactccatcagcatcttccatctcctctgattgaattgatctcaatggaaaaagtggaggaggcaacttaggtacagctgacagagtgcgtataggaattagagagttacgacgtggagcaggtgtaggaagaatcctgtgtgcaatcgggcacatagaagctctccccaacctctttagaacaactggttgttcatcaatatctggattgttttccttgttttctttttctgtcaggtcattgtgcttcaaaggacaatctacagtagcagaaggcaccgagagtttgtaggaattgttttcagtaagtggtcgaggtatattaagtggaaacttgttttcatcacaagtctttagagcagaaattttgctggcaagtggtagcctcgtaggtgctgcatcttcctcctcattctgttgtctcatatgctgttgctgaaactgttcagcaaattttaaagtcaacgtgctgtcgagcaagctttctctctacaagaagttgtgatcctagttctttaatctcgcacatcatattaacagtctaatcagctaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="104244" stop="105607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104544" g_stop="105307" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E591779" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104544" e_stop="105307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCTTCCCCTACTACCAATAGAGATCCTAACTTTCTCCATTCCCACGTTGACGCCAACTCTTCTGATGTTCTGTTGCATAGGAGACTTGAACTGCATTTTCTTCTGAAGACTTCGTCGCAGGACACTGTTGAGCTTCTTACTGGCTGTCTTAAGCTCTTTAGGACTATCCTGTGGAGTTGGTTCAGGTAAGCATTTTGAATCAGCTCCATCAGCATCTTCCATCCCCTCTGATTGAATTGATCTCAATGGAAAAAGTGGAGGAGGCAACTTAGGTACAGCTGATAGAGTGCGTATGGGAATTAGAGAGTTACGACGTGGAGCAGGTGTAGGAAGAATCCTGTGTGCAATGGGACACATAGAAGCTCTCCCTGACCTCTTTAGAACGACTGGTTGTTCATCAATATCTGGATTGTTTTCCTTGTTTTCTTTTTCTGTCAGGTCATAGTGCTTCAAAGCACAATCTACATTAGCAGAAGGCACCGAGAGTTTGTAGGAATTGTTCTCAGTTAGTGGTCGAGTTATATTAAGTGGGAACTTATTTTCATCGTAAGTCTTCAGAGCAGAAATTTTGCTGGCAAGTGGTAGCCTCGTAGGTGGTGCTGCATCTTCCTCCTCATTCTGTTGTCTGATATGCTGTTGCTGAAACTGTTCAGC-AATTTTAGAGTCAACGTGCTGTCGAGCAAGTTTTCTCTCTACAAGAAGTTGTGCTTCTAGTTCTTTAATCT-GCACATCATATTAACAGCCTAATCAGCTAAAATG</genome_strand>
        <mrna_strand>GCCATTCTTCCCCTGCTACCAATAGAGATCCTAACTTTCTCCATTCCCACGTTTACGCCAACTCTTCTGATGTTCTGCTGCATAGGAGACTTGAACTGCATTTTCTTCTGAAGACTTCTTCTCAAGACACTGTTGAGCTTCTTACTGGCTGTCTTAAGCTCTTTAGGACTGTCCTGTGAAGTTGGTTCAGGTAAGCATTTTGAATCAACTCCATCAGCATCTTCCATCTCCTCTGATTGAATTGATCTCAATGGAAAAAGTGGAGGAGGCAACTTAGGTACAGCTGACAGAGTGCGTATAGGAATTAGAGAGTTACGACGTGGAGCAGGTGTAGGAAGAATCCTGTGTGCAATCGGGCACATAGAAGCTCTCCCCAACCTCTTTAGAACAACTGGTTGTTCATCAATATCTGGATTGTTTTCCTTGTTTTCTTTTTCTGTCAGGTCATTGTGCTTCAAAGGACAATCTACAGTAGCAGAAGGCACCGAGAGTTTGTAGGAATTGTTTTCAGTAAGTGGTCGAGGTATATTAAGTGGAAACTTGTTTTCATCACAAGTCTTTAGAGCAGAAATTTTGCTGGCAAGTGGTAGCCTCGTA---GGTGCTGCATCTTCCTCCTCATTCTGTTGTCTCATATGCTGTTGCTGAAACTGTTCAGCAAATTTTAAAGTCAACGTGCTGTCGAGCAAGCTTTCTCTCTACAAGAAGTTGTGATCCTAGTTCTTTAATCTCGCACATCATATTAACAGTCTAATCAGCTAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417600" ref_strand="+" ref_description="SGN-E417600 [STM-25-B2]">
      <seq>gaaaaggatatgaaaaacaaaagccttcaggacaagattaaagaactagaatcacaacttcttgtagagagaaagcttgctcgacagcacgttgactctaaaattgctgaacagtttcagcaacagcatatgagacaacagaatgaggaggaagatgcagcacctacgaggctaccacttgccagcaaaatttctgctctaaagacttgtgatgaaaacaagtttccacttaatatacctcgaccacttactgagaacaattcctacaaactctcggtgccttctgctactgtagattgtcctttgaagcacaatgacctgacagaaaaagaaaacaaggaaaacaatccagatattgatgaacaaccagttgttctaaagaggttggggagagcttctatgtgcccgattgcacacaggattcttcctacacctgctccacgtcgtaactctctaattcctatacgcactctgtcagctgtacctaagttgcctcctccactttttccattgagatcaattcaatcagaggagatggaagatgctgatggggttgattcaaaatgcttacctgaaccaactccacaggatagtcctaaagagcttaagacagctagtaagaagctcaacagtgtcttgtgacgaagtcttcagaagaaatgcagttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="105696" stop="104333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105396" g_stop="105361" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105271" g_stop="104633" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="671" r_length="635" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E417600" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105396" e_stop="105361"/>
          <exon e_start="105271" e_stop="104633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAGGTCTGAATTCAAACTTTATTCAGATATGTGAAGTTTGAAATTATTACATACCACATTTTAGCTGATTAGGCTGTTAATATGATGTGCAGATTAAAGAACTAGAAGCACAACTTCTTGTAGAGAGAAAACTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATCAGACAACAGAATGAGGAGGAAGATGCAGCACCACCTACGAGGCTACCACTTGCCAGCAAAATTTCTGCTCTGAAGACTTACGATGAAAATAAGTTCCCACTTAATATAACTCGACCACTAACTGAGAACAATTCCTACAAACTCTCGGTGCCTTCTGCTAATGTAGATTGTGCTTTGAAGCACTATGACCTGACAGAAAAAGAAAACAAGGAAAACAATCCAGATATTGATGAACAACCAGTCGTTCTAAAGAGGTCAGGGAGAGCTTCTATGTGTCCCATTGCACACAGGATTCTTCCTACACCTGCTCCACGTCGTAACTCTCTAATTCCCATACGCACTCTATCAGCTGTACCTAAGTTGCCTCCTCCACTTTTTCCATTGAGATCAATTCAATCAGAGGGGATGGAAGATGCTGATGGAGCTGATTCAAAATGCTTACCTGAACCAACTCCACAGGATAGTCCTAAAGAGCTTAAGACAGCCAGTAAGAAGCTCAACAGTGTCCTGCGACGAAGTCTTCAGAAGAAAATGCAGTTCAAG</genome_strand>
        <mrna_strand>GAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG.........................................................................................ATTAAAGAACTAGAATCACAACTTCTTGTAGAGAGAAAGCTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATGAGACAACAGAATGAGGAGGAAGATGCAG---CACCTACGAGGCTACCACTTGCCAGCAAAATTTCTGCTCTAAAGACTTGTGATGAAAACAAGTTTCCACTTAATATACCTCGACCACTTACTGAGAACAATTCCTACAAACTCTCGGTGCCTTCTGCTACTGTAGATTGTCCTTTGAAGCACAATGACCTGACAGAAAAAGAAAACAAGGAAAACAATCCAGATATTGATGAACAACCAGTTGTTCTAAAGAGGTTGGGGAGAGCTTCTATGTGCCCGATTGCACACAGGATTCTTCCTACACCTGCTCCACGTCGTAACTCTCTAATTCCTATACGCACTCTGTCAGCTGTACCTAAGTTGCCTCCTCCACTTTTTCCATTGAGATCAATTCAATCAGAGGAGATGGAAGATGCTGATGGGGTTGATTCAAAATGCTTACCTGAACCAACTCCACAGGATAGTCCTAAAGAGCTTAAGACAGCTAGTAAGAAGCTCAACAGTGTCTTGTGACGAAGTCTTCAGAAG-AAATGCAGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446431" ref_strand="+" ref_description="SGN-E446431 [cSTA-21-K2]">
      <seq>gaaaaggatatgaaaaacaaaagccttcaggacaagattaaagaactagaatcacaacttcttgtagagagaaagcttgctcgacagcacgttgactctaaaattgctgaacagtttcagcaacagcatatgagacaacagaatgaggaggaagatgcagcacctacgaggctaccacttgccagcaaaatttctgctctaaagacttgtgatgaaaacaagtttccacttaatatacctcgaccacttactgagaacaattcctacaaactctcggtgccttctgctactgtagattgtcctttgaagcacaatgacctgacagaaaaagaaaacaaggaaaacaatccagatattgatgaacaaccagttgttctaaagaggttggggagagcttctatgtgcccgattgcacacaggattcttcctacacctgctccacgtcgtaactctctaattcctatacgcactctgtcagctgtacctaagttgcctcctccactttttccattgagatcaattcaatcagaggagatggaagatgctgatggggttgattcaaaatgcttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="105696" stop="104431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105396" g_stop="105361" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105271" g_stop="104731" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="574" r_length="538" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E446431" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105396" e_stop="105361"/>
          <exon e_start="105271" e_stop="104731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAGGTCTGAATTCAAACTTTATTCAGATATGTGAAGTTTGAAATTATTACATACCACATTTTAGCTGATTAGGCTGTTAATATGATGTGCAGATTAAAGAACTAGAAGCACAACTTCTTGTAGAGAGAAAACTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATCAGACAACAGAATGAGGAGGAAGATGCAGCACCACCTACGAGGCTACCACTTGCCAGCAAAATTTCTGCTCTGAAGACTTACGATGAAAATAAGTTCCCACTTAATATAACTCGACCACTAACTGAGAACAATTCCTACAAACTCTCGGTGCCTTCTGCTAATGTAGATTGTGCTTTGAAGCACTATGACCTGACAGAAAAAGAAAACAAGGAAAACAATCCAGATATTGATGAACAACCAGTCGTTCTAAAGAGGTCAGGGAGAGCTTCTATGTGTCCCATTGCACACAGGATTCTTCCTACACCTGCTCCACGTCGTAACTCTCTAATTCCCATACGCACTCTATCAGCTGTACCTAAGTTGCCTCCTCCACTTTTTCCATTGAGATCAATTCAATCAGAGGGGATGGAAGATGCTGATGGAGCTGATTCAAAATGCTTACCTG</genome_strand>
        <mrna_strand>GAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG.........................................................................................ATTAAAGAACTAGAATCACAACTTCTTGTAGAGAGAAAGCTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATGAGACAACAGAATGAGGAGGAAGATGCAG---CACCTACGAGGCTACCACTTGCCAGCAAAATTTCTGCTCTAAAGACTTGTGATGAAAACAAGTTTCCACTTAATATACCTCGACCACTTACTGAGAACAATTCCTACAAACTCTCGGTGCCTTCTGCTACTGTAGATTGTCCTTTGAAGCACAATGACCTGACAGAAAAAGAAAACAAGGAAAACAATCCAGATATTGATGAACAACCAGTTGTTCTAAAGAGGTTGGGGAGAGCTTCTATGTGCCCGATTGCACACAGGATTCTTCCTACACCTGCTCCACGTCGTAACTCTCTAATTCCTATACGCACTCTGTCAGCTGTACCTAAGTTGCCTCCTCCACTTTTTCCATTGAGATCAATTCAATCAGAGGAGATGGAAGATGCTGATGGGGTTGATTCAAAATGCTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465252" ref_strand="+" ref_description="SGN-E465252 [cPRO-20-F7]">
      <seq>caaactgtggctaattgatctagcaggaagtgagaggatagctaagacagaagtacagggtgaaaggttaaaagaaacccaaaatataaacagatctctttctgcccttggagatgtgatatcttcacttgcaacaaaaagcgctcatattccattccggaactcgaaacttactcatttgctccaagactcactaggaggagattcaaaaacattgatgtttgtacagatcagtccaaatgagaatgacttgagtgagactctttgctcattaaattttgcaagtcgagttcgaggtatagagctaggtccagcaaagaagcaagtggatagtatggagcttctgaaatacaaacagatggttgaaaagggcaaacaagatatgaagaacaaagattttcagatgaaaaagatggaggatacagttcatggcttggatattaagttgaaagaaaaggatatgaaaaacaaaagccttcaggacaagattaaagaactagaatcacaacttcttgtagagagaaagcttgctcgacagcacgttgactctaaaattgctgaacagtttcagcaacagcatatgagacaacagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="106414" stop="104862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106114" g_stop="105956" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="105873" i_length="83">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105872" g_stop="105835" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="197" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105834" i_stop="105750" i_length="85">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105749" g_stop="105586" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="361" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105585" i_stop="105487" i_length="99">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105486" g_stop="105361" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="487" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105271" g_stop="105162" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="597" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E465252" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106114" e_stop="105956"/>
          <exon e_start="105872" e_stop="105835"/>
          <exon e_start="105749" e_stop="105586"/>
          <exon e_start="105486" e_stop="105361"/>
          <exon e_start="105271" e_stop="105162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGCTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCCCATATTCCATTCCGGTACTTGCAATATTCTTGTGCACATTCTCAATATATTTTGCAACGTCTTCCTTTCTGATATTTTTTTTTTCATCGTCTTATAGGAATTCGAAACTTACTCATTTGCTCCAAGACTCACTAGGTATTTTTCTCTTTGATTTGGTTGATTCATGAACTTCAGAAGAAACTATAAACAACTAGGACCTGATAAGCTTTTTATTTTACAGGAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAAAAGCAAGTGGACAGTGTGGAGCTTCTGAAATACAAACAGATGGTAGCATAAATTTCTGTTTCGAAATTTACAAAAAAAAATTAAAAGTTTCCTCTAAACTCTAATCTCCCTGCCTTACGGAAATTATATTTACCTTGTCAGGTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATGTTCAGATGAAAAAGATGGAGGATACAGTTCACGGTTTGGATATTAAATTAAAGGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAGGTCTGAATTCAAACTTTATTCAGATATGTGAAGTTTGAAATTATTACATACCACATTTTAGCTGATTAGGCTGTTAATATGATGTGCAGATTAAAGAACTAGAAGCACAACTTCTTGTAGAGAGAAAACTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATCAGACAACAGAATGA</genome_strand>
        <mrna_strand>CAAACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGTTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCTCATATTCCATTCCG...................................................................................GAACTCGAAACTTACTCATTTGCTCCAAGACTCACTAG.....................................................................................GAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCAAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAGAAGCAAGTGGATAGTATGGAGCTTCTGAAATACAAACAGATG...................................................................................................GTTGAAAAGGGCAAACAAGATATGAAGAACAAAGATTTTCAGATGAAAAAGATGGAGGATACAGTTCATGGCTTGGATATTAAGTTGAAAGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG.........................................................................................ATTAAAGAACTAGAATCACAACTTCTTGTAGAGAGAAAGCTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATGAGACAACAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411095" ref_strand="+" ref_description="SGN-E411095 [STM-14-I11]">
      <seq>aactgtggctaattgatctagcaggaagtgagaggatagctaagacagaagtacagggtgaaaggttaaaagaaacccaaaatataaacagatctctttctgcccttggagatgtgatatcttcacttgcaacaaaaagcgcacatattccattccggaactcgaaacttactcatttgctccaagactcactaggaggagattcaaaaacattgatgtttgtacagatcagtccaaatgagaatgacttgagtgagactctttgctcattaaattttgcaagtcgagttcgaggtatagagctaggtccagcaaagaagcaagtggatagtatggagcttctgaaatacaaacagatggtcgaaaagggcaaacaagatatgaagaacaaagattttcagatgaaaaagatggaggatacagttcatggcttggatattaagttgaaagaaaaggatatgaaaaacaaaagccttcaggacaagattaaagaactagaatcacaacttcttgtagagagaaagcttgctcgacagcacgttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="106412" stop="104910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106112" g_stop="105956" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="105873" i_length="83">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105872" g_stop="105835" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="195" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105834" i_stop="105750" i_length="85">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105749" g_stop="105586" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="359" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105585" i_stop="105487" i_length="99">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105486" g_stop="105361" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="485" r_length="126" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105271" g_stop="105210" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="547" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E411095" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106112" e_stop="105956"/>
          <exon e_start="105872" e_stop="105835"/>
          <exon e_start="105749" e_stop="105586"/>
          <exon e_start="105486" e_stop="105361"/>
          <exon e_start="105271" e_stop="105210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGCTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCCCATATTCCATTCCGGTACTTGCAATATTCTTGTGCACATTCTCAATATATTTTGCAACGTCTTCCTTTCTGATATTTTTTTTTTCATCGTCTTATAGGAATTCGAAACTTACTCATTTGCTCCAAGACTCACTAGGTATTTTTCTCTTTGATTTGGTTGATTCATGAACTTCAGAAGAAACTATAAACAACTAGGACCTGATAAGCTTTTTATTTTACAGGAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAAAAGCAAGTGGACAGTGTGGAGCTTCTGAAATACAAACAGATGGTAGCATAAATTTCTGTTTCGAAATTTACAAAAAAAAATTAAAAGTTTCCTCTAAACTCTAATCTCCCTGCCTTACGGAAATTATATTTACCTTGTCAGGTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATGTTCAGATGAAAAAGATGGAGGATACAGTTCACGGTTTGGATATTAAATTAAAGGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAGGTCTGAATTCAAACTTTATTCAGATATGTGAAGTTTGAAATTATTACATACCACATTTTAGCTGATTAGGCTGTTAATATGATGTGCAGATTAAAGAACTAGAAGCACAACTTCTTGTAGAGAGAAAACTTGCTCGACAGCACGTTGACTC</genome_strand>
        <mrna_strand>AACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGTTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCACATATTCCATTCCG...................................................................................GAACTCGAAACTTACTCATTTGCTCCAAGACTCACTAG.....................................................................................GAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCAAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAGAAGCAAGTGGATAGTATGGAGCTTCTGAAATACAAACAGATG...................................................................................................GTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATTTTCAGATGAAAAAGATGGAGGATACAGTTCATGGCTTGGATATTAAGTTGAAAGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG.........................................................................................ATTAAAGAACTAGAATCACAACTTCTTGTAGAGAGAAAGCTTGCTCGACAGCACGTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467750" ref_strand="+" ref_description="SGN-E467750 [cSTB-1-J23]">
      <seq>aactgtggctaattgatctagcaggaagtgagaggatagctaagacagaagtacagggtgaaaggttaaaagaaacccaaaatataaacagatctctttctgcccttggagatgtgatatcttcacttgcaacaaaaagcgcacatattccattccggaactcgaaacttactcatttgctccaagactcactaggaggagattcaaaaacattgatgtttgtacagatcagtccaaatgagaatgacttgagtgagactctttgctcattaaattttgcaagtcgagttcgaggtatagagctaggtccagcaaagaagcaagtggatagtatggagcttctgaaatacaaacagatggtcgaaaagggcaaacaagatatgaagaacaaagattttcagatgaaaaagatggaggatacagttcatggcttggatattaagttgaaagaaaaggatatgaaaaacaaaagccttcaggacaagattaaagaactagaatcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="106412" stop="104949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106112" g_stop="105956" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="105873" i_length="83">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105872" g_stop="105835" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="195" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105834" i_stop="105750" i_length="85">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105749" g_stop="105586" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="359" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105585" i_stop="105487" i_length="99">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105486" g_stop="105361" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="485" r_length="126" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105271" g_stop="105249" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="508" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E467750" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106112" e_stop="105956"/>
          <exon e_start="105872" e_stop="105835"/>
          <exon e_start="105749" e_stop="105586"/>
          <exon e_start="105486" e_stop="105361"/>
          <exon e_start="105271" e_stop="105249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGCTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCCCATATTCCATTCCGGTACTTGCAATATTCTTGTGCACATTCTCAATATATTTTGCAACGTCTTCCTTTCTGATATTTTTTTTTTCATCGTCTTATAGGAATTCGAAACTTACTCATTTGCTCCAAGACTCACTAGGTATTTTTCTCTTTGATTTGGTTGATTCATGAACTTCAGAAGAAACTATAAACAACTAGGACCTGATAAGCTTTTTATTTTACAGGAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAAAAGCAAGTGGACAGTGTGGAGCTTCTGAAATACAAACAGATGGTAGCATAAATTTCTGTTTCGAAATTTACAAAAAAAAATTAAAAGTTTCCTCTAAACTCTAATCTCCCTGCCTTACGGAAATTATATTTACCTTGTCAGGTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATGTTCAGATGAAAAAGATGGAGGATACAGTTCACGGTTTGGATATTAAATTAAAGGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAGGTCTGAATTCAAACTTTATTCAGATATGTGAAGTTTGAAATTATTACATACCACATTTTAGCTGATTAGGCTGTTAATATGATGTGCAGATTAAAGAACTAGAAGCACAACT</genome_strand>
        <mrna_strand>AACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGTTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCACATATTCCATTCCG...................................................................................GAACTCGAAACTTACTCATTTGCTCCAAGACTCACTAG.....................................................................................GAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCAAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAGAAGCAAGTGGATAGTATGGAGCTTCTGAAATACAAACAGATG...................................................................................................GTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATTTTCAGATGAAAAAGATGGAGGATACAGTTCATGGCTTGGATATTAAGTTGAAAGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG.........................................................................................ATTAAAGAACTAGAATCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468371" ref_strand="+" ref_description="SGN-E468371 [cSTB-3-B3]">
      <seq>gtggctaattgatctagcaggaagtgagaggatagctaagacagaagtacagggtgaaagggtaaaagaaactcaaaatataaacagatctctttctgcccttggagatgtgatatcttcacttgccacaaaaagccgcacatattccattccggaactcgaaacttactcatttgctccaagactcactaggaggagattcaaaaacattgatgtttgtacagatcagtccaaatgagaatgacttgagtgagactctttgctcattaaattttgcaagtcgagttcgaggtatagagctaggtccagcaaagaagcaagtggatagtatggagcttctgaaatacaaacagatggtcgaaaagggcaaacaagatatgaagaacaaagattttcagatgaaaaagatggaggatacagttcatggcttggatattaagttgaaagaaaaggatatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="106408" stop="105080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106108" g_stop="105956" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="105873" i_length="83">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105872" g_stop="105835" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="192" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105834" i_stop="105750" i_length="85">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105749" g_stop="105586" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="356" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105585" i_stop="105487" i_length="99">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105486" g_stop="105380" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="463" r_length="107" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E468371" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106108" e_stop="105956"/>
          <exon e_start="105872" e_stop="105835"/>
          <exon e_start="105749" e_stop="105586"/>
          <exon e_start="105486" e_stop="105380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGCTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAG-CGCCCATATTCCATTCCGGTACTTGCAATATTCTTGTGCACATTCTCAATATATTTTGCAACGTCTTCCTTTCTGATATTTTTTTTTTCATCGTCTTATAGGAATTCGAAACTTACTCATTTGCTCCAAGACTCACTAGGTATTTTTCTCTTTGATTTGGTTGATTCATGAACTTCAGAAGAAACTATAAACAACTAGGACCTGATAAGCTTTTTATTTTACAGGAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAAAAGCAAGTGGACAGTGTGGAGCTTCTGAAATACAAACAGATGGTAGCATAAATTTCTGTTTCGAAATTTACAAAAAAAAATTAAAAGTTTCCTCTAAACTCTAATCTCCCTGCCTTACGGAAATTATATTTACCTTGTCAGGTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATGTTCAGATGAAAAAGATGGAGGATACAGTTCACGGTTTGGATATTAAATTAAAGGAAAAGGATATGAAAAA</genome_strand>
        <mrna_strand>GTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGGTAAAAGAAACTCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCCACAAAAAGCCGCACATATTCCATTCCG...................................................................................GAACTCGAAACTTACTCATTTGCTCCAAGACTCACTAG.....................................................................................GAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCAAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAGAAGCAAGTGGATAGTATGGAGCTTCTGAAATACAAACAGATG...................................................................................................GTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATTTTCAGATGAAAAAGATGGAGGATACAGTTCATGGCTTGGATATTAAGTTGAAAGAAAAGGATATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324560" ref_strand="+" ref_description="SGN-E324560 [cTOC-9-H5]">
      <seq>tggcaacctcggttctagatgggtacaatgcgggcatatttgcctacggtcagacaggtactggcaagacatttacaatggaaggcacagaagaatctcgtggggccaattaccgaactcttgaggagctattccgcattattgaggagagaaagaacgcagttcggtatgaaatatcagtgagcgtcttggaagtatacaatgagcagattcgggatttgcttgtttcaagatctcaacaaggcgtgaaaaggcttgaaatcaagcaagatggagaaggaatgcatcatgttcctggactagttgaggcccacgtgaataatatgaatgaagtttgggaagctttacgaactggtagcaatgcgagggcagttggatcaaccaatgcaaatgagcacagcagccgatcacattgcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="-" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="107200" stop="105954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106900" g_stop="106648" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106647" i_stop="106416" i_length="232">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106415" g_stop="106254" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="415" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106253" i_stop="106172" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106171" g_stop="106164" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="423" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="-" ref_id="SGN-E324560" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106900" e_stop="106648"/>
          <exon e_start="106415" e_stop="106254"/>
          <exon e_start="106171" e_stop="106164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACCTCGGTTCTAGATGGGTACAATGCTTGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGTCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAGGATCTCAACAAGGCGTGAAAAGGTAGCTATAAAATAATCTTCTCACTTTTTTTACAAGCTAGTGGAGTTATACTTCAGAGAGTTGCCAAGCTATCAAGAACGAAGAGAACAATGTATCTTGTAAAATATGATTTTTATCAGTTAACTATACTTGTATGGCTGAGAATGATTCCTGTGGTGGACTACAGAAAATTCGAGTCTAATCCTAAACTACCATATGACAGTTTCATGTTGGTTCCATGAATTTATTTTAGGCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTGGTTTGTGCATATAATTTATAGTAGATTTTCTTTTGTTTACACATTATGTCACTATTACTAATCAGGTACATTGTGTGTGTAGCATACATT</genome_strand>
        <mrna_strand>TGGCAACCTCGGTTCTAGATGGGTACAATGCGGGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGCCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAAGATCTCAACAAGGCGTGAAAAG........................................................................................................................................................................................................................................GCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTG..................................................................................CATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289800" ref_strand="+" ref_description="SGN-E289800 [cLET-9-O16]">
      <seq>ctgagtgtgtgttcatcttcaacacaagtcaattgctctaatcagaaaacaaaagatggcaacacaggcattgatctcttcatcatctattgcatcctcaacagaggctgccagacaaattctaggaggaagacctttccaatctcaaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0054D17-3jRw1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0054D17.1" temp_strand="+" temp_description="C12HBa0054D17.1  AC229680.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0054D17 upload_account_name:italy">
        <position start="114447" stop="115200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114747" g_stop="114900" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0054D17.1" gen_strand="+" ref_id="SGN-E289800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0054D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114747" e_stop="114900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAG</genome_strand>
        <mrna_strand>CTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>103</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4474" PGL_stop="6350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4474" e_stop="4723"/>
            <exon e_start="4820" e_stop="4894"/>
            <exon e_start="5777" e_stop="5920"/>
            <exon e_start="6160" e_stop="6255"/>
            <exon e_start="6345" e_stop="6350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.075" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4474" e_stop="4723" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4724" i_stop="4819" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4820" e_stop="4894" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4895" i_stop="5776" i_length="882"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5777" e_stop="5920" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.075" acc_prob="0.953">
            <gDNA_intron_boundary i_start="5921" i_stop="6159" i_length="239"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6160" e_stop="6255" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6256" i_stop="6344" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6345" e_stop="6350" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4474" stop="4723"/>
              <exon start="4820" stop="4894"/>
              <exon start="5777" stop="5920"/>
              <exon start="6160" stop="6252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4475" stop="4723"/>
              <exon start="4820" stop="4894"/>
              <exon start="5777" stop="5920"/>
              <exon start="6160" stop="6255"/>
              <exon start="6345" stop="6350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTG : GTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGA : GTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTG : AAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCACCTT : GTATTG</gDNA_template>
            <first_frame> G  I  K  K  E  F  F  G  Q  D  L  V  M  G  V  F  I  F  D  E  R  L  *  I  W  N  K  E  G  V  F  F  F  W  G  G  E  I  L  R  N  G  K  Y  N  R  G  Y  N  S  T  S  C  V  H  C  V  D  S  N  M  V  A  *  F  L  Q  L  W  S  P  F  G  L  F  H  L  P  N  L  S  L  S   : G  *  *  A  V  C  D  *  I  K  E  E  I  A  V  *  G  K  K  T  V  E  S  T  T   : S  A  F  *  F  *  N  S  E  V  V  K  P  C  S  *  K  D  L  A  C  M  H  G  E  Y  R  F  T  E  N  S  P  P  Y  H  S  V  V  Y  A  E  I  Q  T  L  D  C   : E  R  H  C  S  A  V  S  L  L  R  K  K  P  T  Y  V  H  G  N  E  G  S  S  *  I  Y  W  R  *  S  P   : C  I  </first_frame>
            <second_frame>  E  S  K  K  S  F  L  V  K  I  W  *  W  V  C  L  F  L  M  K  D  C  K  F  G  I  K  R  E  F  F  F  S  G  V  G  R  F  *  E  M  A  S  I  T  E  V  T  I  L  H  H  V  C  I  V  L  I  V  I  W  L  L  N  S  F  N  Y  G  H  P  L  V  Y  F  I  S  L  I  Y  L  Y  L  :  V  N  E  Q  Y  V  T  R  L  K  K  K  L  Q  F  E  E  K  R  Q  S  N  Q  R  R  :  V  L  S  D  S  E  T  V  R  W  L  N  H  A  L  E  K  I  W  P  V  C  M  E  N  I  V  S  Q  K  I  L  L  P  I  I  P  W  F  M  Q  K  Y  K  P  W  T  V  :  K  D  I  A  V  Q  S  L  Y  L  G  R  S  P  P  M  F  T  E  M  R  V  L  R  E  S  T  G  D  D  H  L  :  V  L </second_frame>
            <third_frame>   N  Q  K  R  V  F  W  S  R  F  G  D  G  C  V  Y  F  *  *  K  T  V  N  L  E  *  R  G  S  F  F  F  L  G  W  G  D  F  K  K  W  Q  V  *  Q  R  L  Q  F  Y  I  M  C  A  L  C  *  *  *  Y  G  C  L  I  P  S  I  M  V  T  L  W  F  I  S  S  P  *  S  I  F  I  W :   L  M  S  S  M  *  L  D  *  R  R  N  C  S  L  R  K  K  D  S  R  I  N  D  E :   C  F  L  I  L  K  Q  *  G  G  *  T  M  L  L  K  R  F  G  L  Y  A  W  R  I  S  F  H  R  K  F  S  S  L  S  F  R  G  L  C  R  N  T  N  P  G  L  * :   K  T  L  Q  C  S  L  S  T  *  E  E  A  H  L  C  S  R  K  *  G  F  F  V  N  L  L  E  M  I  T  L :   Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4592" stop="4723"/>
                    <exon start="4820" stop="4894"/>
                    <exon start="5777" stop="5920"/>
                    <exon start="6160" stop="6255"/>
                    <exon start="6345" stop="6350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMASITEVTILHHVCIVLIVIWLLNSFNYGHPLVYFISLIYLYLVNEQYVTRLKKKLQFEEKRQSNQRRVLSDSETVRWLNHALEKIWPVCMENIVSQKILLPIIPWFMQKYKPWTVKDIAVQSLYLGRSPPMFTEMRVLRESTGDDHLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7618" PGL_stop="10854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7618" e_stop="7631"/>
            <exon e_start="7888" e_stop="7936"/>
            <exon e_start="8292" e_stop="8387"/>
            <exon e_start="8459" e_stop="8648"/>
            <exon e_start="9494" e_stop="9617"/>
            <exon e_start="9845" e_stop="10854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.533" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7618" e_stop="7631" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.804">
            <gDNA_intron_boundary i_start="7632" i_stop="7887" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7888" e_stop="7936" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7937" i_stop="8291" i_length="355"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8292" e_stop="8387" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.533">
            <gDNA_intron_boundary i_start="8388" i_stop="8458" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8459" e_stop="8648" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9494" e_stop="9617" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="9845" e_stop="10854" e_length="1010"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7618" stop="7631"/>
              <exon start="7888" stop="7936"/>
              <exon start="8292" stop="8387"/>
              <exon start="8459" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="9987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7622" stop="7631"/>
              <exon start="7888" stop="7936"/>
              <exon start="8292" stop="8387"/>
              <exon start="8459" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8606" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8606" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8621" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10175" stop="10854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACACTTGTTGAG : CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG : AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG : GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG : AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG : TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCAT</gDNA_template>
            <first_frame> R  H  L  L  S :   P  I  C  W  *  Y  T  W  R  N  L  F  H  P  N  K  :  R  K  A  G  F  L  S  M  Q  R  S  P  L  P  M  L  F  W  K  S  L  K  R  K  T  *  S  Q  Q  I  *  M  :  D  S  L  I  H  M  L  R  G  I  L  G  P  T  D  S  R  L  G  L  R  R  R  H  *  L  H  S  G  K  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  I  C  S  T  *  M  F  V  T  E  T  I  F  L  R  M  K  H  W   : E  I  I  P  *  T  S  V  I  I  G  M  A  R  G  M  I  Y  G  C  L  F  I  M  L  K  W  G  D  Y  V  L  P  *  L  *  L  K  A  A  K  S :   L  Q  S  S  H  P  S  R  Q  K  R  T  S  N  R  R  A  I  L  M  R  W  I  Q  P  K  E  G  P  Y  P  P  R  W  I  S  N  R  Q  K  L  Q  I  H  M  N  Q  L  T  *  K  G  R  R  R  L  A  C  G  Y  T  T  L  A  V  K  Y  H  K  F  G  N  R  E  R  E  R  V  G  L  S  M  E  K  F  M  V  L  M  L  I  P  W  E  E  V  S  S  *  E  G  E  D  L  L  G  V  M  I  L  M  K  A  V  D  L  R  S  R  I  *  L  T  G  V  *  I  R  S  G  P  S  S  T  K  V  R  K  A  R  T  G  L  *  I  L  E  I  L  F  H  L  R  K  L  I  *  R  Q  *  V  Q  R  G  S  V  *  I  L  L  *  T  I  Q  W  K  Q  L  P  E  M  I  V  K  R  L  M  R  E  M  F  N  V  V  A  P  T  R  V  E  S  V  T  R  R  R  I  S  *  D  M  Y  L  G  S  H  H  E  N  L  K  V  S  *  N  Q  Q  H  Q  R  E  I  Y  L  W  N  L  T  P  P  T  I  L  L  P  *  L  V  H  L  *  A  V  Q  *  A  V  V  S  *  P  A  L  A  L  R  I  P  M  A  T  H  *  R  V  V  N  W  *  V  I  R  E  T  *  K  L  V  R  N  *  F  M  I  K  L  *  I  Q  *  V  Q  K  F  L  I  F  E  Y  V  C  C  T  F  S  L  M  Q  S  Y  C  Y  T  F  Y  L  Y  M  N  I  C  N  V  I  V  S  </first_frame>
            <second_frame>  D  T  C  *   : A  Q  Y  A  G  S  T  H  G  E  I  C  F  T  P  T  R :   G  K  L  V  F  Y  R  C  K  G  A  H  C  P  C  Y  F  G  S  P  *  S  G  R  L  K  A  S  R  F  K  W :   T  L  *  S  I  C  *  G  A  S  W  A  L  Q  I  Q  D  *  D  S  E  E  D  I  S  S  T  V  A  R  G  V  Q  D  S  S  L  F  M  G  V  S  *  R  Y  A  Q  H  R  C  L  *  Q  R  P  F  F  C  G  *  N  I  G  :  R  L  F  H  K  H  L  *  L  *  G  W  P  E  A  *  Y  M  V  V  S  S  *  C  *  N  G  E  T  T  S  C  H  N  C  S  *  R  Q  R  K   : V  Y  R  A  V  I  R  A  G  K  N  G  H  Q  T  G  E  Q  F  *  *  D  G  Y  S  R  K  R  V  L  T  H  R  D  G  *  A  I  V  K  N  C  R  Y  I  *  T  N  *  H  R  R  A  E  G  D  W  H  V  G  T  P  P  W  Q  *  S  T  T  S  L  G  T  E  K  G  K  E  S  G  Y  R  W  R  S  S  W  F  *  C  *  F  H  G  R  K  F  Q  V  K  R  G  R  I  Y  S  G  *  *  F  *  *  R  Q  W  I  *  E  V  E  S  N  *  Q  G  Y  K  *  D  R  V  L  L  P  Q  K  S  E  K  R  G  Q  V  Y  K  S  W  R  S  C  S  I  S  A  S  *  S  K  G  S  E  C  K  G  D  R  C  E  S  Y  Y  E  R  F  S  G  N  N  S  P  R  *  *  *  R  G  S  *  G  K  C  S  M  *  *  L  Q  Q  E  *  S  P  *  Q  G  E  E  Y  P  K  T  C  I  S  E  V  I  T  K  I  *  R  *  V  R  T  N  S  I  R  E  R  S  I  C  G  I  *  L  L  R  R  F  Y  S  L  S  W  F  T  S  R  P  F  S  E  R  S  F  H  S  Q  H  W  H  *  E  S  Q  W  Q  H  I  E  E  *  *  I  G  K  *  *  G  K  H  E  N  *  *  G  I  S  S  *  *  S  Y  E  F  S  K  S  K  S  F  *  S  L  N  M  F  V  V  H  F  L  *  C  R  V  T  V  I  P  F  T  C  T  *  I  Y  V  M  *  *  F  H </second_frame>
            <third_frame>   T  L  V  E  :  P  N  M  L  V  V  H  M  E  K  F  V  S  P  Q  Q   : E  E  S  W  F  S  I  D  A  K  E  P  I  A  H  V  I  L  E  V  L  E  A  E  D  L  K  P  A  D  L  N   : G  L  S  D  P  Y  V  K  G  H  L  G  P  Y  R  F  K  T  R  T  Q  K  K  T  L  A  P  Q  W  Q  E  E  F  K  I  P  V  C  S  W  E  S  P  N  D  M  L  N  I  D  V  C  D  R  D  H  F  S  A  D  E  T  L  G :   D  Y  S  I  N  I  C  D  Y  R  D  G  Q  R  H  D  I  W  L  S  L  H  N  V  K  M  G  R  L  R  L  A  I  T  V  V  E  G  S  E  K  :  F  T  E  Q  S  S  E  Q  A  K  T  D  I  K  Q  E  S  N  S  D  E  M  D  T  A  E  R  G  S  L  P  T  E  M  D  K  Q  S  S  K  I  A  D  T  Y  E  P  I  N  I  E  G  Q  K  E  T  G  M  W  V  H  H  P  G  S  E  V  P  Q  V  W  E  Q  R  K  G  K  S  R  V  I  D  G  E  V  H  G  S  D  A  D  S  M  G  G  S  F  K  L  R  G  G  G  S  T  R  G  D  D  S  D  E  G  S  G  S  K  K  S  N  L  I  N  R  G  I  N  K  I  G  S  F  F  H  K  S  Q  K  S  E  D  R  S  I  N  L  G  D  P  V  P  S  P  Q  A  N  L  K  A  V  S  A  K  G  I  G  V  N  L  I  M  N  D  S  V  E  T  T  P  R  D  D  S  K  E  A  H  E  G  N  V  Q  C  S  S  S  N  K  S  R  V  R  D  K  A  K  N  I  L  R  H  V  S  R  K  S  S  R  K  S  K  G  E  L  E  P  T  A  S  E  R  D  L  S  V  E  S  D  S  S  D  D  F  T  P  L  V  G  S  P  L  G  R  S  V  S  G  R  F  I  A  S  T  G  T  E  N  P  N  G  N  T  L  K  S  S  E  L  V  S  D  K  G  N  M  K  T  S  E  E  L  V  H  D  K  A  M  N  S  V  S  P  K  V  S  N  L  *  I  C  L  L  Y  I  F  F  N  A  E  L  L  L  Y  L  L  L  V  H  E  Y  M  *  C  N  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7620" stop="7631"/>
                    <exon start="7888" stop="7936"/>
                    <exon start="8292" stop="8387"/>
                    <exon start="8459" stop="8648"/>
                    <exon start="9494" stop="9617"/>
                    <exon start="9845" stop="10768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLVEPNMLVVHMEKFVSPQQEESWFSIDAKEPIAHVILEVLEAEDLKPADLNGLSDPYVKGHLGPYRFKTRTQKKTLAPQWQEEFKIPVCSWESPNDMLNIDVCDRDHFSADETLGDYSINICDYRDGQRHDIWLSLHNVKMGRLRLAITVVEGSEKFTEQSSEQAKTDIKQESNSDEMDTAERGSLPTEMDKQSSKIADTYEPINIEGQKETGMWVHHPGSEVPQVWEQRKGKSRVIDGEVHGSDADSMGGSFKLRGGGSTRGDDSDEGSGSKKSNLINRGINKIGSFFHKSQKSEDRSINLGDPVPSPQANLKAVSAKGIGVNLIMNDSVETTPRDDSKEAHEGNVQCSSSNKSRVRDKAKNILRHVSRKSSRKSKGELEPTASERDLSVESDSSDDFTPLVGSPLGRSVSGRFIASTGTENPNGNTLKSSELVSDKGNMKTSEELVHDKAMNSVSPKVSNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7726" e_stop="7811"/>
            <exon e_start="7888" e_stop="7936"/>
            <exon e_start="8292" e_stop="8387"/>
            <exon e_start="8459" e_stop="8648"/>
            <exon e_start="9494" e_stop="9617"/>
            <exon e_start="9845" e_stop="10854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.454" acc_prob="0.804" e_score="0.965"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="0.898"/>
          <exon-intron don_prob="0.943" acc_prob="0.533" e_score="0.938"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.911" acc_prob="0.998" e_score="0.976"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="7726" e_stop="7811" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.454" acc_prob="0.804">
            <gDNA_intron_boundary i_start="7812" i_stop="7887" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.898">
            <gDNA_exon_boundary e_start="7888" e_stop="7936" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7937" i_stop="8291" i_length="355"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="8292" e_stop="8387" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.533">
            <gDNA_intron_boundary i_start="8388" i_stop="8458" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="8459" e_stop="8648" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8649" i_stop="9493" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="9494" e_stop="9617" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9618" i_stop="9844" i_length="227"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="9845" e_stop="10854" e_length="1010"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7726" stop="7811"/>
              <exon start="7888" stop="7936"/>
              <exon start="8292" stop="8387"/>
              <exon start="8459" stop="8609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8606" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8606" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8621" stop="8648"/>
              <exon start="9494" stop="9617"/>
              <exon start="9845" stop="10249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10175" stop="10854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGTTTCACATTAATACACTATCGGGTATCAACTCTCGGCCTTTTCTTTCACTTGCTCAAATGGTGTGCATAGTTCACCAACTG : CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG : AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG : GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG : AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG : TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCAT</gDNA_template>
            <first_frame> K  C  F  T  L  I  H  Y  R  V  S  T  L  G  L  F  F  H  L  L  K  W  C  A  *  F  T  N  C :   P  I  C  W  *  Y  T  W  R  N  L  F  H  P  N  K  :  R  K  A  G  F  L  S  M  Q  R  S  P  L  P  M  L  F  W  K  S  L  K  R  K  T  *  S  Q  Q  I  *  M  :  D  S  L  I  H  M  L  R  G  I  L  G  P  T  D  S  R  L  G  L  R  R  R  H  *  L  H  S  G  K  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  I  C  S  T  *  M  F  V  T  E  T  I  F  L  R  M  K  H  W   : E  I  I  P  *  T  S  V  I  I  G  M  A  R  G  M  I  Y  G  C  L  F  I  M  L  K  W  G  D  Y  V  L  P  *  L  *  L  K  A  A  K  S :   L  Q  S  S  H  P  S  R  Q  K  R  T  S  N  R  R  A  I  L  M  R  W  I  Q  P  K  E  G  P  Y  P  P  R  W  I  S  N  R  Q  K  L  Q  I  H  M  N  Q  L  T  *  K  G  R  R  R  L  A  C  G  Y  T  T  L  A  V  K  Y  H  K  F  G  N  R  E  R  E  R  V  G  L  S  M  E  K  F  M  V  L  M  L  I  P  W  E  E  V  S  S  *  E  G  E  D  L  L  G  V  M  I  L  M  K  A  V  D  L  R  S  R  I  *  L  T  G  V  *  I  R  S  G  P  S  S  T  K  V  R  K  A  R  T  G  L  *  I  L  E  I  L  F  H  L  R  K  L  I  *  R  Q  *  V  Q  R  G  S  V  *  I  L  L  *  T  I  Q  W  K  Q  L  P  E  M  I  V  K  R  L  M  R  E  M  F  N  V  V  A  P  T  R  V  E  S  V  T  R  R  R  I  S  *  D  M  Y  L  G  S  H  H  E  N  L  K  V  S  *  N  Q  Q  H  Q  R  E  I  Y  L  W  N  L  T  P  P  T  I  L  L  P  *  L  V  H  L  *  A  V  Q  *  A  V  V  S  *  P  A  L  A  L  R  I  P  M  A  T  H  *  R  V  V  N  W  *  V  I  R  E  T  *  K  L  V  R  N  *  F  M  I  K  L  *  I  Q  *  V  Q  K  F  L  I  F  E  Y  V  C  C  T  F  S  L  M  Q  S  Y  C  Y  T  F  Y  L  Y  M  N  I  C  N  V  I  V  S  </first_frame>
            <second_frame>  N  V  S  H  *  Y  T  I  G  Y  Q  L  S  A  F  S  F  T  C  S  N  G  V  H  S  S  P  T   : A  Q  Y  A  G  S  T  H  G  E  I  C  F  T  P  T  R :   G  K  L  V  F  Y  R  C  K  G  A  H  C  P  C  Y  F  G  S  P  *  S  G  R  L  K  A  S  R  F  K  W :   T  L  *  S  I  C  *  G  A  S  W  A  L  Q  I  Q  D  *  D  S  E  E  D  I  S  S  T  V  A  R  G  V  Q  D  S  S  L  F  M  G  V  S  *  R  Y  A  Q  H  R  C  L  *  Q  R  P  F  F  C  G  *  N  I  G  :  R  L  F  H  K  H  L  *  L  *  G  W  P  E  A  *  Y  M  V  V  S  S  *  C  *  N  G  E  T  T  S  C  H  N  C  S  *  R  Q  R  K   : V  Y  R  A  V  I  R  A  G  K  N  G  H  Q  T  G  E  Q  F  *  *  D  G  Y  S  R  K  R  V  L  T  H  R  D  G  *  A  I  V  K  N  C  R  Y  I  *  T  N  *  H  R  R  A  E  G  D  W  H  V  G  T  P  P  W  Q  *  S  T  T  S  L  G  T  E  K  G  K  E  S  G  Y  R  W  R  S  S  W  F  *  C  *  F  H  G  R  K  F  Q  V  K  R  G  R  I  Y  S  G  *  *  F  *  *  R  Q  W  I  *  E  V  E  S  N  *  Q  G  Y  K  *  D  R  V  L  L  P  Q  K  S  E  K  R  G  Q  V  Y  K  S  W  R  S  C  S  I  S  A  S  *  S  K  G  S  E  C  K  G  D  R  C  E  S  Y  Y  E  R  F  S  G  N  N  S  P  R  *  *  *  R  G  S  *  G  K  C  S  M  *  *  L  Q  Q  E  *  S  P  *  Q  G  E  E  Y  P  K  T  C  I  S  E  V  I  T  K  I  *  R  *  V  R  T  N  S  I  R  E  R  S  I  C  G  I  *  L  L  R  R  F  Y  S  L  S  W  F  T  S  R  P  F  S  E  R  S  F  H  S  Q  H  W  H  *  E  S  Q  W  Q  H  I  E  E  *  *  I  G  K  *  *  G  K  H  E  N  *  *  G  I  S  S  *  *  S  Y  E  F  S  K  S  K  S  F  *  S  L  N  M  F  V  V  H  F  L  *  C  R  V  T  V  I  P  F  T  C  T  *  I  Y  V  M  *  *  F  H </second_frame>
            <third_frame>   M  F  H  I  N  T  L  S  G  I  N  S  R  P  F  L  S  L  A  Q  M  V  C  I  V  H  Q  L  :  P  N  M  L  V  V  H  M  E  K  F  V  S  P  Q  Q   : E  E  S  W  F  S  I  D  A  K  E  P  I  A  H  V  I  L  E  V  L  E  A  E  D  L  K  P  A  D  L  N   : G  L  S  D  P  Y  V  K  G  H  L  G  P  Y  R  F  K  T  R  T  Q  K  K  T  L  A  P  Q  W  Q  E  E  F  K  I  P  V  C  S  W  E  S  P  N  D  M  L  N  I  D  V  C  D  R  D  H  F  S  A  D  E  T  L  G :   D  Y  S  I  N  I  C  D  Y  R  D  G  Q  R  H  D  I  W  L  S  L  H  N  V  K  M  G  R  L  R  L  A  I  T  V  V  E  G  S  E  K  :  F  T  E  Q  S  S  E  Q  A  K  T  D  I  K  Q  E  S  N  S  D  E  M  D  T  A  E  R  G  S  L  P  T  E  M  D  K  Q  S  S  K  I  A  D  T  Y  E  P  I  N  I  E  G  Q  K  E  T  G  M  W  V  H  H  P  G  S  E  V  P  Q  V  W  E  Q  R  K  G  K  S  R  V  I  D  G  E  V  H  G  S  D  A  D  S  M  G  G  S  F  K  L  R  G  G  G  S  T  R  G  D  D  S  D  E  G  S  G  S  K  K  S  N  L  I  N  R  G  I  N  K  I  G  S  F  F  H  K  S  Q  K  S  E  D  R  S  I  N  L  G  D  P  V  P  S  P  Q  A  N  L  K  A  V  S  A  K  G  I  G  V  N  L  I  M  N  D  S  V  E  T  T  P  R  D  D  S  K  E  A  H  E  G  N  V  Q  C  S  S  S  N  K  S  R  V  R  D  K  A  K  N  I  L  R  H  V  S  R  K  S  S  R  K  S  K  G  E  L  E  P  T  A  S  E  R  D  L  S  V  E  S  D  S  S  D  D  F  T  P  L  V  G  S  P  L  G  R  S  V  S  G  R  F  I  A  S  T  G  T  E  N  P  N  G  N  T  L  K  S  S  E  L  V  S  D  K  G  N  M  K  T  S  E  E  L  V  H  D  K  A  M  N  S  V  S  P  K  V  S  N  L  *  I  C  L  L  Y  I  F  F  N  A  E  L  L  L  Y  L  L  L  V  H  E  Y  M  *  C  N  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7728" stop="7811"/>
                    <exon start="7888" stop="7936"/>
                    <exon start="8292" stop="8387"/>
                    <exon start="8459" stop="8648"/>
                    <exon start="9494" stop="9617"/>
                    <exon start="9845" stop="10768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFHINTLSGINSRPFLSLAQMVCIVHQLPNMLVVHMEKFVSPQQEESWFSIDAKEPIAHVILEVLEAEDLKPADLNGLSDPYVKGHLGPYRFKTRTQKKTLAPQWQEEFKIPVCSWESPNDMLNIDVCDRDHFSADETLGDYSINICDYRDGQRHDIWLSLHNVKMGRLRLAITVVEGSEKFTEQSSEQAKTDIKQESNSDEMDTAERGSLPTEMDKQSSKIADTYEPINIEGQKETGMWVHHPGSEVPQVWEQRKGKSRVIDGEVHGSDADSMGGSFKLRGGGSTRGDDSDEGSGSKKSNLINRGINKIGSFFHKSQKSEDRSINLGDPVPSPQANLKAVSAKGIGVNLIMNDSVETTPRDDSKEAHEGNVQCSSSNKSRVRDKAKNILRHVSRKSSRKSKGELEPTASERDLSVESDSSDDFTPLVGSPLGRSVSGRFIASTGTENPNGNTLKSSELVSDKGNMKTSEELVHDKAMNSVSPKVSNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10971" PGL_stop="10413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10971" e_stop="10413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="10971" e_stop="10413" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10971" stop="10413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10962" stop="10497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10952" stop="10527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCATACACAGAAAAAGTATTGCATACTTTTATACAAATCATACGGGCTTTGCTCAAAGCAGACAATGTCGCACCATGTCAGAAGTTTCACTAACATGTACAAACAGAAGCCAATATGAAACTATTACATTACATATATTCATGTACAAGTAAAAGGTATAACAGTAACTCTGCATTAAAGAAAATGTACAACAAACATATTCAAAGATTAGAAACTTTTGGACTTACTGAATTCATAGCTTTATCATGAACTAATTCCTCACTAGTTTTCATGTTTCCCTTATCACTTACCAATTCACTACTCTTCAATGTGTTGCCATTGGGATTCTCAGTGCCAGTGCTGGCTATGAAACGACCGCTCACTGAACGGCCTAGAGGTGAACCAACTAAGGGAGTAAAATCGTCGGAGGAGTCAGATTCCACAGATAGATCTCTCTCTGATGCTGTTGGTTCTAACTCACCTTTAGATTTTCGTGATGACTTCCGAGATACATGTCTTAGGATATTCTTCGCCTTGTCACGGACTCTACTCTTGTTGGAGCTACTACATTGAACAT</gDNA_template>
            <first_frame> K  A  Y  T  E  K  V  L  H  T  F  I  Q  I  I  R  A  L  L  K  A  D  N  V  A  P  C  Q  K  F  H  *  H  V  Q  T  E  A  N  M  K  L  L  H  Y  I  Y  S  C  T  S  K  R  Y  N  S  N  S  A  L  K  K  M  Y  N  K  H  I  Q  R  L  E  T  F  G  L  T  E  F  I  A  L  S  *  T  N  S  S  L  V  F  M  F  P  L  S  L  T  N  S  L  L  F  N  V  L  P  L  G  F  S  V  P  V  L  A  M  K  R  P  L  T  E  R  P  R  G  E  P  T  K  G  V  K  S  S  E  E  S  D  S  T  D  R  S  L  S  D  A  V  G  S  N  S  P  L  D  F  R  D  D  F  R  D  T  C  L  R  I  F  F  A  L  S  R  T  L  L  L  L  E  L  L  H  *  T  </first_frame>
            <second_frame>  K  H  T  Q  K  K  Y  C  I  L  L  Y  K  S  Y  G  L  C  S  K  Q  T  M  S  H  H  V  R  S  F  T  N  M  Y  K  Q  K  P  I  *  N  Y  Y  I  T  Y  I  H  V  Q  V  K  G  I  T  V  T  L  H  *  R  K  C  T  T  N  I  F  K  D  *  K  L  L  D  L  L  N  S  *  L  Y  H  E  L  I  P  H  *  F  S  C  F  P  Y  H  L  P  I  H  Y  S  S  M  C  C  H  W  D  S  Q  C  Q  C  W  L  *  N  D  R  S  L  N  G  L  E  V  N  Q  L  R  E  *  N  R  R  R  S  Q  I  P  Q  I  D  L  S  L  M  L  L  V  L  T  H  L  *  I  F  V  M  T  S  E  I  H  V  L  G  Y  S  S  P  C  H  G  L  Y  S  C  W  S  Y  Y  I  E  H </second_frame>
            <third_frame>   S  I  H  R  K  S  I  A  Y  F  Y  T  N  H  T  G  F  A  Q  S  R  Q  C  R  T  M  S  E  V  S  L  T  C  T  N  R  S  Q  Y  E  T  I  T  L  H  I  F  M  Y  K  *  K  V  *  Q  *  L  C  I  K  E  N  V  Q  Q  T  Y  S  K  I  R  N  F  W  T  Y  *  I  H  S  F  I  M  N  *  F  L  T  S  F  H  V  S  L  I  T  Y  Q  F  T  T  L  Q  C  V  A  I  G  I  L  S  A  S  A  G  Y  E  T  T  A  H  *  T  A  *  R  *  T  N  *  G  S  K  I  V  G  G  V  R  F  H  R  *  I  S  L  *  C  C  W  F  *  L  T  F  R  F  S  *  *  L  P  R  Y  M  S  *  D  I  L  R  L  V  T  D  S  T  L  V  G  A  T  T  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10719" stop="10417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSSLVFMFPLSLTNSLLFNVLPLGFSVPVLAMKRPLTERPRGEPTKGVKSSEESDSTDRSLSDAVGSNSPLDFRDDFRDTCLRIFFALSRTLLLLELLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14255" PGL_stop="13515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14255" e_stop="13515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="14255" e_stop="13515" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14255" stop="13709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14236" stop="13643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14236" stop="13828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14235" stop="13682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13953" stop="13515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13953" stop="13515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13935" stop="13617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGTTCAAGTGTTTGTACTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</gDNA_template>
            <first_frame> V  V  Q  V  F  V  L  F  C  V  C  I  K  Q  Y  Y  G  N  F  G  T  *  G  *  E  *  G  M  Y  Q  W  V  Q  *  *  F  D  Q  F  *  S  L  S  N  R  L  L  P  S  H  V  I  A  *  *  L  A  R  R  R  R  Y  *  S  *  *  R  E  I  I  E  C  D  *  I  S  R  G  *  N  *  *  S  S  P  D  K  R  *  S  R  F  I  S  E  Y  S  S  K  E  Y  Y  Q  R  *  R  L  A  V  V  R  I  *  S  K  S  K  S  K  L  K  F  I  R  I  E  L  S  *  F  E  L  D  G  Y  R  D  G  Y  C  S  F  *  Y  H  *  *  *  H  D  E  L  L  V  H  G  Q  *  L  W  T  R  S  *  C  V  *  I  W  L  W  Y  F  S  L  R  G  K  *  S  Q  F  I  S  F  N  N  T  S  L  S  R  N  F  N  M  D  F  G  N  *  K  K  N  T  R  L  K  F  V  P  K  N  Y  N  F  Y  C  N  *  L  A  R  G  K  L  Y  L  N  *  M  Y  *  *  G  G  T  Q  *  N  N  N  T  Y  H  A  P </first_frame>
            <second_frame>  *  F  K  C  L  Y  F  F  V  C  V  S  N  N  T  M  A  T  L  V  P  E  V  E  N  R  A  C  I  N  G  C  N  N  D  L  T  N  F  D  H  S  Q  I  D  C  S  L  L  M  S  L  L  D  D  S  Q  G  V  D  D  I  D  H  D  N  E  R  L  S  S  V  I  R  S  L  E  A  E  I  D  D  H  H  L  I  N  V  D  H  D  S  F  Q  N  T  H  Q  R  S  T  T  N  D  E  D  W  Q  S  *  E  S  D  Q  S  Q  N  Q  S  *  N  L  F  E  S  S  C  L  D  L  S  W  M  D  I  E  M  D  I  A  P  S  N  T  I  S  D  D  M  M  N  F  W  Y  M  D  N  S  Y  G  Q  D  H  D  V  Y  E  Y  G  Y  G  T  F  P  L  E  E  N  D  H  N  S  S  A  L  T  T  Q  A  *  V  E  T  S  I  W  T  S  E  I  K  K  K  T  Q  G  *  S  L  C  Q  K  I  I  T  S  I  V  I  D  *  L  E  V  N  C  T  *  I  R  C  I  S  E  E  E  L  N  K  I  T  T  R  I  M  L   </second_frame>
            <third_frame>   S  S  S  V  C  T  F  L  C  V  Y  Q  T  I  L  W  Q  L  W  Y  L  R  L  R  I  G  H  V  S  M  G  A  I  M  I  *  P  I  L  I  T  L  K  *  I  A  P  F  S  C  H  C  L  M  T  R  K  A  *  T  I  L  I  M  I  T  R  D  Y  R  V  *  L  D  L  S  R  L  K  L  M  I  I  T  *  *  T  L  I  T  I  H  F  R  I  L  I  K  G  V  L  P  T  M  K  I  G  S  R  E  N  L  I  K  V  K  I  K  V  K  I  Y  S  N  R  A  V  L  I  *  V  G  W  I  *  R  W  I  L  L  L  L  I  P  L  V  M  T  *  *  T  F  G  T  W  T  I  V  M  D  K  I  M  M  C  M  N  M  V  M  V  L  F  P  *  R  K  M  I  T  I  H  Q  L  *  Q  H  K  P  K  S  K  L  Q  Y  G  L  R  K  L  K  K  K  H  K  A  K  V  C  A  K  K  L  *  L  L  L  *  L  I  S  *  R  *  I  V  L  E  L  D  V  L  V  R  R  N  S  I  K  *  Q  H  V  S  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14251" stop="13925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCLYFFVCVSNNTMATLVPEVENRACINGCNNDLTNFDHSQIDCSLLMSLLDDSQGVDDIDHDNERLSSVIRSLEAEIDDHHLINVDHDSFQNTHQRSTTNDEDWQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13894" stop="13685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFESSCLDLSWMDIEMDIAPSNTISDDMMNFWYMDNSYGQDHDVYEYGYGTFPLEENDHNSSALTTQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24469" PGL_stop="25819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24469" e_stop="25819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="24469" e_stop="25819" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24469" stop="25181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24469" stop="25064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24469" stop="24994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="25219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25058" stop="25819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25058" stop="25718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAAGAAGGTCTGCAGGAAACACATCTAAAAATTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAGACAACCCTTACTAACCATTTTCTTAACACGAAGAAAGGAGACAATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATCCGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  T  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  T  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  Y  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  K  A  R  N  G  I  F  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  E  V  N  I  S  I  R  W  H  T  K  K  V  C  R  K  H  I  *  K  F  A  D  Y  R  N  R  L  N  *  R  Y  L  G  S  V  I  P  E  M  C  Q  E  S  *  T  T  L  T  N  H  F  L  N  T  K  K  G  D  N  T  N  R  I  G  S  V  V  A  L  P  H  *  Q  I  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  Q  T  Q  N  Y  I  K  I  N  H  V  *  D  N  Q  V  Y  I  S  I  V  P  H  K  I  H  Q  T  R  P  I  Y  S  F  N  Y  Y  R  V  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  N  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  K  Y  T  N  I  S  S  I  N  M  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  A  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  K  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  Y  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  R  R  S  A  G  N  T  S  K  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  R  Q  P  L  L  T  I  F  L  T  R  R  K  E  T  I  R  T  G  L  E  V  *  S  P  S  H  T  N  R  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  R  P  R  I  T  S  K  S  T  M  S  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  I  L  S  T  I  T  E  S  P  T  G  V  D  T  R  I  D  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  A  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  I  K  R  L  P  V  I  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  N  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  *  S  Q  R  D  P  D  M  A  *  K  S  R  L  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  I  D  R  T  S  H  Q  S  E  E  W  D  I  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  T  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  L  W  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  R  G  L  S  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  D  N  P  Y  *  P  F  S  *  H  E  E  R  R  Q  Y  E  P  D  W  K  C  S  R  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  D  P  E  L  H  Q  N  Q  P  C  L  R  *  P  S  L  H  K  Y  C  S  P  Q  N  S  P  N  K  T  Y  I  F  F  Q  L  L  Q  S  H  P  P  E  *  T  H  E  *  I  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  Q  I  H  M  K  M  W  S  Q  D  Q  I  I  Q  K  P  C  N  H  K  S  K  D  Y  L  *  *  Q  H  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25196" stop="25441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPRRSAGNTSKNSRTIETDSIEGTWVVSSLRCAKKARQPLLTIFLTRRKETIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24733" stop="24972"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVYQAHESSRGIRKTKRHHYKFVMPIPGPKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25592" stop="25819"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFPTKFTKQDLYILSTITESPTGVDTRIDMSSNSQCKLRPLANEADTYENVEPGSNNTEAMQSQIKRLPVITASD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24665" stop="24862"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFKYTNISSINMITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26425" PGL_stop="27144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26425" e_stop="27144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="26425" e_stop="27144" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26425" stop="27144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26428" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTTTAGGCTCAAGAACTCATCTCTTTTCCTGTCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGCGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAATATCATAAGCATCCTCAGATTCAGCACCTTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAACCCCTCATTCTATACTTGTTCATTCTCCTCTTCCTCACCCTCTCTTAACACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  V  P  Q  S  L  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  R  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  N  I  I  S  I  L  R  F  S  T  F  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  Q  P  L  I  L  Y  L  F  I  L  L  F  L  T  L  S  *  H  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  F  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  I  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  T  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  Y  T  C  S  F  S  S  S  S  P  S  L  N  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  C  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  A  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  Y  H  K  H  P  Q  I  Q  H  L  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  M  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  P  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  T  P  H  S  I  L  V  H  S  P  L  P  H  P  L  L  T  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26426" stop="26635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDNARNLASYAVTDILPCFRLKNSSLFLSLKVWGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="27148" PGL_stop="26595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27148" e_stop="26595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="27148" e_stop="26595" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27148" stop="26595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGTTAAGAGAGGGTGAGGAAGAGGAGAATGAACAAGTATAGAATGAGGGGTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  V  K  R  G  *  G  R  G  E  *  T  S  I  E  *  G  V  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  *  Y  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  L  R  E  G  E  E  E  E  N  E  Q  V  *  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  I  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  C  *  E  R  V  R  K  R  R  M  N  K  Y  R  M  R  G  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  K  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  R  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27057" stop="26596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDILVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49941" PGL_stop="50705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49941" e_stop="50705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="49941" e_stop="50705" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49941" stop="50705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATTCATAGCTCCACAAATCTTGGAATTCCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTTGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAATTTCTGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGTGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</gDNA_template>
            <first_frame> E  N  S  *  L  H  K  S  W  N  S  N  G  N  W  S  D  S  I  N  T  Q  M  T  I  S  E  L  S  Q  Q  L  K  I  P  L  N  S  S  E  K  F  S  L  T  S  P  P  S  A  S  T  K  M  E  S  L  P  K  I  Q  Q  P  H  K  R  Y  W  R  F  S  K  Q  D  F  F  P  E  P  S  F  H  N  F  G  S  Y  K  N  A  L  S  Q  T  P  N  R  L  K  N  R  L  F  S  R  S  S  D  T  S  E  L  I  E  L  K  K  E  S  E  N  E  M  K  L  C  L  T  W  W  D  L  I  W  L  G  F  G  S  V  V  G  S  G  I  F  S  I  T  G  Q  E  T  R  N  D  A  G  P  A  I  V  L  S  Y  A  I  S  G  L  S  A  L  L  S  V  F  C  Y  T  E  F  S  V  D  I  P  V  A  G  G  S  F  S  F  L  R  I  E  L  G  D  F  V  A  F  I  A  A  A  N  I  L  L  E  A  M  V  G  A  A  G  L  G  R  S  W  S  S  Y  F  A  S  I  I  N  N  N  P  D  F  L  R  I  K  I  D  S  F  V  E  G  F  N  L </first_frame>
            <second_frame>  K  I  H  S  S  T  N  L  G  I  P  T  E  I  G  R  I  R  L  I  L  R  *  Q  S  Q  S  F  L  N  N  S  K  F  P  *  I  L  P  K  N  S  V  S  L  L  L  L  Q  P  Q  Q  K  W  S  L  Y  Q  K  S  N  N  P  I  S  V  I  G  V  L  A  N  K  I  S  S  P  N  R  L  F  T  I  L  D  P  T  K  M  P  F  L  K  P  Q  I  V  S  R  I  V  F  F  H  V  H  Q  I  P  V  N  *  L  S  L  R  K  N  R  K  M  K  *  N  Y  V  *  L  G  G  I  *  F  G  L  D  L  D  L  L  L  V  Q  G  F  L  A  L  R  V  K  K  P  E  M  M  L  D  L  L  L  F  F  R  M  Q  F  L  V  Y  L  L  C  F  L  C  F  V  I  Q  N  F  L  L  I  F  L  L  L  V  G  L  F  R  F  *  E  L  N  W  V  I  L  L  H  L  *  L  L  L  I  F  Y  *  R  L  W  W  V  L  L  G  *  D  V  H  G  R  L  I  L  L  V  L  L  I  I  T  R  I  F  *  G  S  R  L  I  L  L  *  K  G  L  I   </second_frame>
            <third_frame>   K  F  I  A  P  Q  I  L  E  F  Q  R  K  L  V  G  F  D  *  Y  S  D  D  N  L  R  A  F  S  T  T  Q  N  S  L  K  F  F  R  K  I  Q  S  H  F  S  S  F  S  L  N  K  N  G  V  F  T  K  N  P  T  T  P  *  A  L  L  A  F  *  Q  T  R  F  L  P  R  T  V  F  S  Q  F  W  I  L  Q  K  C  P  F  S  N  P  K  S  S  Q  E  S  S  F  F  T  F  I  R  Y  Q  *  I  D  *  A  *  E  R  I  G  K  *  N  E  I  M  F  D  L  V  G  F  N  L  A  W  I  W  I  C  C  W  F  R  D  F  *  H  Y  G  S  R  N  P  K  *  C  W  T  C  Y  C  S  F  V  C  N  F  W  F  I  C  F  A  F  C  V  L  L  Y  R  I  F  C  *  Y  S  C  C  W  W  V  F  F  V  F  E  N  *  I  G  *  F  C  C  I  Y  S  C  C  *  Y  S  I  R  G  Y  G  G  C  C  W  V  R  T  F  M  V  V  L  F  C  *  Y  Y  *  *  *  P  G  F  F  E  D  Q  D  *  F  F  C  R  R  V  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49953" stop="50705"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHKSWNSNGNWSDSINTQMTISELSQQLKIPLNSSEKFSLTSPPSASTKMESLPKIQQPHKRYWRFSKQDFFPEPSFHNFGSYKNALSQTPNRLKNRLFSRSSDTSELIELKKESENEMKLCLTWWDLIWLGFGSVVGSGIFSITGQETRNDAGPAIVLSYAISGLSALLSVFCYTEFSVDIPVAGGSFSFLRIELGDFVAFIAAANILLEAMVGAAGLGRSWSSYFASIINNNPDFLRIKIDSFVEGFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="72606" PGL_stop="64325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72606" e_stop="71911"/>
            <exon e_start="70161" e_stop="70051"/>
            <exon e_start="69964" e_stop="69920"/>
            <exon e_start="67903" e_stop="67831"/>
            <exon e_start="67752" e_stop="67640"/>
            <exon e_start="67454" e_stop="67395"/>
            <exon e_start="67214" e_stop="67167"/>
            <exon e_start="67096" e_stop="67028"/>
            <exon e_start="66162" e_stop="66101"/>
            <exon e_start="65210" e_stop="64872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.935"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.306" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="72606" e_stop="71911" e_length="696"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70161" e_stop="70051" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69964" e_stop="69920" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67903" e_stop="67831" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.306" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67752" e_stop="67640" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.985">
            <gDNA_intron_boundary i_start="67639" i_stop="67455" i_length="185"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67454" e_stop="67395" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67394" i_stop="67215" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67214" e_stop="67167" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67166" i_stop="67097" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67096" e_stop="67028" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67027" i_stop="66163" i_length="865"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66162" e_stop="66101" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66100" i_stop="65211" i_length="890"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65210" e_stop="64872" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72606" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72569" stop="71911"/>
              <exon start="70161" stop="70112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72569" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72558" stop="71937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72558" stop="72131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72473" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72472" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72472" stop="72174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72460" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72460" stop="71911"/>
              <exon start="70161" stop="70071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72455" stop="71919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72454" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71981" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67831"/>
              <exon start="67752" stop="67640"/>
              <exon start="67454" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="65127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71973" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67831"/>
              <exon start="67752" stop="67640"/>
              <exon start="67454" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="65001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70154" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67831"/>
              <exon start="67752" stop="67640"/>
              <exon start="67454" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="65001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70067" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67831"/>
              <exon start="67752" stop="67640"/>
              <exon start="67454" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67725" stop="67640"/>
              <exon start="67454" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67430" stop="67395"/>
              <exon start="67214" stop="67167"/>
              <exon start="67096" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67091" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67091" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67053" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67048" stop="67028"/>
              <exon start="66162" stop="66101"/>
              <exon start="65210" stop="64872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66155" stop="66101"/>
              <exon start="65210" stop="64872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTAAACTTCACTTCTCTCTCTACAAACAAAAACAAGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG : AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT : GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA : GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT : ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG : TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG : GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG : GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG : GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG : GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</gDNA_template>
            <first_frame> H  L  N  F  T  S  L  S  T  N  K  N  K  N  T  T  K  F  L  C  L  L  L  L  K  F  V  A  I  Y  I  T  K  T  L  L  L  F  C  F  L  S  L  L  F  S  L  I  T  I  F  L  N  E  Y  L  S  I  N  P  L  C  S  V  N  S  S  F  D  *  F  F  I  K  N  N  Q  I  G  E  K  G  L  L  *  F  I  E  I  V  E  F  *  C  F  L  G  I  S  E  A  F  S  V  L  G  V  F  L  F  F  C  G  F  *  V  F  S  S  M  A  A  G  A  K  E  V  S  G  E  T  T  V  V  E  A  P  A  V  Q  S  L  S  S  P  N  T  D  N  T  S  N  N  S  E  S  N  G  V  K  D  S  S  D  S  I  A  N  A  K  S  E  F  H  M  H  D  I  A  D  M  L  K  K  L  K  L  N  P  Q  A  K  E  F  F  P  S  S  Y  N  R  G  T  V  G  A  G  D  Q  M  I  L  S  N  F  V  P  A  N  K  T  T  G  G  D  G  F  Q  N  N  R  R  :  R  G  S  N  F  N  Q  G  K  R  R  M  N  N  R  A  Y  K  A  Q  R  E  D  S  I  R  R  T  V  Y  V  S  E  I  D  S  N  :  V  T  E  E  Q  L  A  A  L  F  S  A  Y  G  Q  :  V  V  D  C  R  I  C  G  D  P  H  S  R  L  R  F  A  F  V  E  F  A  D  E   : Y  S  A  R  A  A  L  C  L  C  G  T  I  L  G  F  S  Q  L  K  V  L  P  S  K  T  A  I  L  P  V  N  P  T  F  L  P  R  :  S  E  D  E  R  E  M  C  A  R  T  V  Y  C  T  N  I  D  K  K  :  V  T  Q  A  D  V  K  N  F  F  E  T  R  C  G  E  :  V  S  R  L  R  L  L  G  D  H  V  H  S  T  R  I  A  F  V  E  F  V  M  :  A  E  S  A  I  L  A  L  D  C  C  G  E  V  L  G  S  Q  R  I  R :   V  S  P  S  K  T  P  V  R  P  R  L  P  R  A  M  M  Q  *  A  N  V  C  A  H  G  P  G  E  R  V  Q  R  Q  K  P  P  S  E  D  L  R  S  P  W  E  K  S  K  Q  K  F  C  F  S  N  L  H  V  L  S  F  H  V  P  F  F  T  A  Y  S  N  L  C  Y  Q  K  T  T  *  P  S  S  Q  R  F  L  N  W  N  F  R  T  C  T  T  F  T  L  I  D  R  S  S  M  N  L  L  M  F  L  Y   </first_frame>
            <second_frame>  T  *  T  S  L  L  S  L  Q  T  K  T  R  I  P  P  N  S  S  A  F  C  Y  *  N  L  L  L  Y  I  *  Q  K  P  Y  C  F  F  A  F  S  L  F  F  S  L  S  S  P  S  S  *  M  S  I  Y  Q  *  T  H  Y  A  L  *  I  P  H  L  I  D  F  S  *  R  I  I  K  L  V  K  R  G  C  F  N  L  L  K  L  *  N  F  S  V  F  L  V  F  L  K  L  F  L  F  W  V  C  F  Y  F  F  V  G  F  E  Y  F  H  Q  W  L  L  V  L  K  K  C  L  V  R  Q  Q  W  L  K  L  L  L  F  S  L  Y  H  H  Q  T  L  I  T  P  A  I  I  L  N  L  M  V  L  R  I  H  P  I  Q  S  Q  M  R  N  R  S  F  I  C  M  I  L  L  I  C  *  R  N  L  S  *  I  H  R  L  R  S  F  F  L  L  L  I  I  V  V  L  L  V  L  V  I  R  *  F  S  V  T  L  Y  Q  L  T  R  L  R  G  V  M  V  F  K  T  T  E  G :   E  A  A  T  L  T  R  G  K  G  G  *  T  I  E  L  I  R  L  K  E  K  I  A  S  G  E  Q  Y  M  F  L  R  *  I  A  M :   S  L  R  S  N  L  L  L  C  L  V  L  M  D  K :   L  L  T  A  E  F  V  V  I  H  I  L  V  F  V  L  L  S  W  S  L  L  M  S  :  T  L  Q  E  Q  H  F  A  F  V  G  Q  F  *  V  S  L  N  *  R  S  Y  L  Q  K  L  L  F  Y  P  *  I  L  H  S  F  Q  G :   Q  R  M  S  V  K  C  V  P  G  L  S  I  V  Q  I  L  I  R  R :   L  L  R  L  M  S  R  I  F  L  K  P  D  V  A  R :   F  L  A  *  G  F  W  E  I  T  C  T  R  P  A  L  L  L  L  S  L  *  W :   L  R  V  Q  F  W  L  *  T  V  A  V  R  Y  W  D  P  S  A  S   : G  *  V  P  Q  K  H  Q  *  G  P  D  F  R  V  P  *  C  S  K  P  M  C  V  L  M  D  L  E  K  E  F  K  D  K  N  P  P  R  K  T  *  G  H  H  G  K  N  R  N  K  N  S  V  S  V  I  S  M  F  S  L  F  M  F  L  S  L  L  P  T  V  T  Y  A  T  R  K  Q  R  S  H  R  A  N  D  F  *  I  G  I  S  A  L  V  L  L  L  P  *  S  I  V  P  L  *  I  S  *  C  S  S  M  </second_frame>
            <third_frame>   P  K  L  H  F  S  L  Y  K  Q  K  Q  E  Y  H  Q  I  P  L  P  S  V  I  E  I  C  C  Y  I  Y  N  K  N  P  I  A  F  L  L  S  L  S  S  F  L  S  H  H  H  L  P  K  *  V  F  I  N  K  P  I  M  L  C  E  F  L  I  *  L  I  F  H  K  E  *  S  N  W  *  K  G  V  A  L  I  Y  *  N  C  R  I  L  V  F  S  W  Y  F  *  S  F  F  C  S  G  C  V  F  I  F  L  W  V  L  S  I  F  I  N  G  C  W  C  *  R  S  V  W  *  D  N  S  G  *  S  S  C  C  S  V  F  I  I  T  K  H  *  *  H  Q  Q  *  F  *  I  *  W  C  *  G  F  I  R  F  N  R  K  C  E  I  G  V  S  Y  A  *  Y  C  *  Y  V  E  E  T  *  A  E  S  T  G  *  G  V  F  S  F  F  L  *  S  W  Y  C  W  C  W  *  S  D  D  S  Q  *  L  C  T  S  *  Q  D  Y  G  G  *  W  F  S  K  Q  Q  K   : E  R  Q  Q  L  *  P  G  E  K  E  D  E  Q  *  S  L  *  G  S  K  R  R  *  H  Q  A  N  S  I  C  F  *  D  R  *  Q   : C  H  *  G  A  T  C  C  F  V  *  C  L  W  T   : S  C  *  L  P  N  L  W  *  S  T  F  S  S  S  F  C  F  R  G  V  C  *  *  V :   L  C  K  S  S  T  L  P  L  W  D  N  F  R  F  L  S  I  E  G  P  T  F  K  N  C  Y  S  T  R  E  S  Y  I  P  S  K   : V  R  G  *  A  *  N  V  C  Q  D  C  L  L  Y  K  Y  *  *  E   : G  Y  S  G  *  C  Q  E  F  F  *  N  Q  M  W  R   : G  F  S  P  E  A  F  G  R  S  R  A  L  D  P  H  C  F  C  *  V  C  N   : G  *  E  C  N  F  G  F  R  L  L  R  *  G  I  G  I  P  A  H  Q  :  G  E  S  L  K  N  T  S  E  A  P  T  S  A  C  H  D  A  V  S  Q  C  V  C  S  W  T  W  R  K  S  S  K  T  K  T  P  L  G  R  L  E  V  T  M  G  K  I  E  T  K  I  L  F  Q  *  S  P  C  S  L  F  S  C  S  F  L  Y  C  L  Q  *  L  M  L  P  E  N  N  V  A  I  E  P  T  I  F  K  L  E  F  P  H  L  Y  Y  F  Y  L  D  R  S  F  L  Y  E  S  L  D  V  P  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72261" stop="71911"/>
                    <exon start="70161" stop="70051"/>
                    <exon start="69964" stop="69920"/>
                    <exon start="67903" stop="67831"/>
                    <exon start="67752" stop="67640"/>
                    <exon start="67454" stop="67395"/>
                    <exon start="67214" stop="67167"/>
                    <exon start="67096" stop="67028"/>
                    <exon start="66162" stop="66101"/>
                    <exon start="65210" stop="65153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSSMAAGAKEVSGETTVVEAPAVQSLSSPNTDNTSNNSESNGVKDSSDSIANAKSEFHMHDIADMLKKLKLNPQAKEFFPSSYNRGTVGAGDQMILSNFVPANKTTGGDGFQNNRRRGSNFNQGKRRMNNRAYKAQREDSIRRTVYVSEIDSNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFVEFADEYSARAALCLCGTILGFSQLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVTQADVKNFFETRCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALDCCGEVLGSQRIRVSPSKTPVRPRLPRAMMQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72606" stop="72397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLNFTSLSTNKNKNTTKFLCLLLLKFVAIYITKTLLLFCFLSLLFSLITIFLNEYLSINPLCSVNSSFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72606" e_stop="71911"/>
            <exon e_start="70161" e_stop="70051"/>
            <exon e_start="69964" e_stop="69920"/>
            <exon e_start="67903" e_stop="67831"/>
            <exon e_start="67752" e_stop="67710"/>
            <exon e_start="64827" e_stop="64325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.935"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.306" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="72606" e_stop="71911" e_length="696"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71910" i_stop="70162" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70161" e_stop="70051" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70050" i_stop="69965" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69964" e_stop="69920" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69919" i_stop="67904" i_length="2016"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67903" e_stop="67831" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.306" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67830" i_stop="67753" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67752" e_stop="67710" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67709" i_stop="64828" i_length="2882"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="64827" e_stop="64325" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72606" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72569" stop="71911"/>
              <exon start="70161" stop="70112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72569" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72558" stop="71937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72558" stop="72131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72473" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72472" stop="71911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72472" stop="72174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72460" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72460" stop="71911"/>
              <exon start="70161" stop="70071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72455" stop="71919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72454" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71940" stop="71911"/>
              <exon start="70161" stop="70051"/>
              <exon start="69964" stop="69920"/>
              <exon start="67903" stop="67831"/>
              <exon start="67752" stop="67710"/>
              <exon start="64827" stop="64325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTAAACTTCACTTCTCTCTCTACAAACAAAAACAAGAATACCACCAAATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG : AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT : GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA : GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT : ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGG : TTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGACAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCAAAATACTATTTGAACCATAC</gDNA_template>
            <first_frame> H  L  N  F  T  S  L  S  T  N  K  N  K  N  T  T  K  F  L  C  L  L  L  L  K  F  V  A  I  Y  I  T  K  T  L  L  L  F  C  F  L  S  L  L  F  S  L  I  T  I  F  L  N  E  Y  L  S  I  N  P  L  C  S  V  N  S  S  F  D  *  F  F  I  K  N  N  Q  I  G  E  K  G  L  L  *  F  I  E  I  V  E  F  *  C  F  L  G  I  S  E  A  F  S  V  L  G  V  F  L  F  F  C  G  F  *  V  F  S  S  M  A  A  G  A  K  E  V  S  G  E  T  T  V  V  E  A  P  A  V  Q  S  L  S  S  P  N  T  D  N  T  S  N  N  S  E  S  N  G  V  K  D  S  S  D  S  I  A  N  A  K  S  E  F  H  M  H  D  I  A  D  M  L  K  K  L  K  L  N  P  Q  A  K  E  F  F  P  S  S  Y  N  R  G  T  V  G  A  G  D  Q  M  I  L  S  N  F  V  P  A  N  K  T  T  G  G  D  G  F  Q  N  N  R  R  :  R  G  S  N  F  N  Q  G  K  R  R  M  N  N  R  A  Y  K  A  Q  R  E  D  S  I  R  R  T  V  Y  V  S  E  I  D  S  N  :  V  T  E  E  Q  L  A  A  L  F  S  A  Y  G  Q  :  V  V  D  C  R  I  C  G  D  P  H  S  R  L  R  F  A  F  V  E  F  A  D  E   : Y  S  A  R  A  A  L  C  L  C  G  T  I  L  G :   F  S  L  D  V  L  Y  M  F  L  V  A  L  R  V  H  H  L  R  T  R  S  L  T  I  R  T  Q  P  W  L  S  A  I  L  T  *  G  K  C  M  *  K  T  C  I  M  H  L  L  I  *  Y  I  E  L  E  *  *  N  V  I  A  I  F  N  N  P  T  K  K  S  W  L  L  N  G  Y  A  V  W  V  Q  A  P  T  T  N  L  S  F  K  I  R  L  S  Q  *  I  F  L  V  R  T  I  N  I  L  R  R  K  N  F  C  P  K  S  F  Y  F  L  G  D  E  C  K  *  N  V  W  T  P  K  R  K  N  R  K  E  D  S  I  L  V  N  M  Y  N  V  P  L  I  I  N  F  I  L  V  *  N  Q  N  T  I  *  T  I  </first_frame>
            <second_frame>  T  *  T  S  L  L  S  L  Q  T  K  T  R  I  P  P  N  S  S  A  F  C  Y  *  N  L  L  L  Y  I  *  Q  K  P  Y  C  F  F  A  F  S  L  F  F  S  L  S  S  P  S  S  *  M  S  I  Y  Q  *  T  H  Y  A  L  *  I  P  H  L  I  D  F  S  *  R  I  I  K  L  V  K  R  G  C  F  N  L  L  K  L  *  N  F  S  V  F  L  V  F  L  K  L  F  L  F  W  V  C  F  Y  F  F  V  G  F  E  Y  F  H  Q  W  L  L  V  L  K  K  C  L  V  R  Q  Q  W  L  K  L  L  L  F  S  L  Y  H  H  Q  T  L  I  T  P  A  I  I  L  N  L  M  V  L  R  I  H  P  I  Q  S  Q  M  R  N  R  S  F  I  C  M  I  L  L  I  C  *  R  N  L  S  *  I  H  R  L  R  S  F  F  L  L  L  I  I  V  V  L  L  V  L  V  I  R  *  F  S  V  T  L  Y  Q  L  T  R  L  R  G  V  M  V  F  K  T  T  E  G :   E  A  A  T  L  T  R  G  K  G  G  *  T  I  E  L  I  R  L  K  E  K  I  A  S  G  E  Q  Y  M  F  L  R  *  I  A  M :   S  L  R  S  N  L  L  L  C  L  V  L  M  D  K :   L  L  T  A  E  F  V  V  I  H  I  L  V  F  V  L  L  S  W  S  L  L  M  S  :  T  L  Q  E  Q  H  F  A  F  V  G  Q  F  *   : V  S  L  W  M  C  F  T  C  F  L  L  L  S  E  C  I  I  Y  V  P  G  L  *  L  Y  E  L  N  H  G  *  V  R  Y  *  R  E  V  S  V  C  R  R  R  V  L  C  I  Y  *  F  D  I  *  N  S  S  D  E  M  *  L  Q  S  S  I  T  P  Q  R  S  L  G  Y  *  M  G  M  Q  F  G  S  K  L  L  P  Q  T  *  V  L  R  F  A  Y  H  N  K  Y  F  *  *  G  R  *  I  F  *  D  G  K  T  F  A  Q  S  H  F  T  F  *  V  M  N  V  N  K  M  F  G  L  Q  K  G  K  I  G  K  K  T  V  F  *  *  I  C  I  M  Y  P  *  *  L  I  S  F  W  Y  K  T  K  I  L  F  E  P  Y </second_frame>
            <third_frame>   P  K  L  H  F  S  L  Y  K  Q  K  Q  E  Y  H  Q  I  P  L  P  S  V  I  E  I  C  C  Y  I  Y  N  K  N  P  I  A  F  L  L  S  L  S  S  F  L  S  H  H  H  L  P  K  *  V  F  I  N  K  P  I  M  L  C  E  F  L  I  *  L  I  F  H  K  E  *  S  N  W  *  K  G  V  A  L  I  Y  *  N  C  R  I  L  V  F  S  W  Y  F  *  S  F  F  C  S  G  C  V  F  I  F  L  W  V  L  S  I  F  I  N  G  C  W  C  *  R  S  V  W  *  D  N  S  G  *  S  S  C  C  S  V  F  I  I  T  K  H  *  *  H  Q  Q  *  F  *  I  *  W  C  *  G  F  I  R  F  N  R  K  C  E  I  G  V  S  Y  A  *  Y  C  *  Y  V  E  E  T  *  A  E  S  T  G  *  G  V  F  S  F  F  L  *  S  W  Y  C  W  C  W  *  S  D  D  S  Q  *  L  C  T  S  *  Q  D  Y  G  G  *  W  F  S  K  Q  Q  K   : E  R  Q  Q  L  *  P  G  E  K  E  D  E  Q  *  S  L  *  G  S  K  R  R  *  H  Q  A  N  S  I  C  F  *  D  R  *  Q   : C  H  *  G  A  T  C  C  F  V  *  C  L  W  T   : S  C  *  L  P  N  L  W  *  S  T  F  S  S  S  F  C  F  R  G  V  C  *  *  V :   L  C  K  S  S  T  L  P  L  W  D  N  F  R  :  F  L  S  G  C  A  L  H  V  S  C  C  S  Q  S  A  S  F  T  Y  P  V  F  N  Y  T  N  S  T  M  V  E  C  D  I  D  V  R  *  V  Y  V  E  D  V  Y  Y  A  F  I  D  L  I  Y  R  T  R  V  M  K  C  D  C  N  L  Q  *  P  H  K  E  V  L  V  I  K  W  V  C  S  L  G  P  S  S  Y  H  K  P  K  F  *  D  S  P  I  T  I  N  I  F  S  K  D  D  K  Y  F  E  T  E  K  L  L  P  K  V  I  L  L  F  R  *  *  M  *  I  K  C  L  D  S  K  K  E  K  *  E  R  R  Q  Y  F  S  E  Y  V  *  C  T  L  N  N  *  F  H  F  G  I  K  P  K  Y  Y  L  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72261" stop="71911"/>
                    <exon start="70161" stop="70051"/>
                    <exon start="69964" stop="69920"/>
                    <exon start="67903" stop="67831"/>
                    <exon start="67752" stop="67710"/>
                    <exon start="64827" stop="64716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSSMAAGAKEVSGETTVVEAPAVQSLSSPNTDNTSNNSESNGVKDSSDSIANAKSEFHMHDIADMLKKLKLNPQAKEFFPSSYNRGTVGAGDQMILSNFVPANKTTGGDGFQNNRRRGSNFNQGKRRMNNRAYKAQREDSIRRTVYVSEIDSNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFVEFADEYSARAALCLCGTILGFSLDVLYMFLVALRVHHLRTRSLTIRTQPWLSAILT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72606" stop="72397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLNFTSLSTNKNKNTTKFLCLLLLKFVAIYITKTLLLFCFLSLLFSLITIFLNEYLSINPLCSVNSSFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="91016" PGL_stop="80473"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91016" e_stop="90898"/>
            <exon e_start="86916" e_stop="85999"/>
            <exon e_start="84599" e_stop="84231"/>
            <exon e_start="84088" e_stop="83822"/>
            <exon e_start="83691" e_stop="83564"/>
            <exon e_start="83420" e_stop="83223"/>
            <exon e_start="81263" e_stop="80588"/>
            <exon e_start="80500" e_stop="80473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="91016" e_stop="90898" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="90897" i_stop="86917" i_length="3981"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86916" e_stop="85999" e_length="918"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="85998" i_stop="84600" i_length="1399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84599" e_stop="84231" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84230" i_stop="84089" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84088" e_stop="83822" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83821" i_stop="83692" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83691" e_stop="83564" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.852">
            <gDNA_intron_boundary i_start="83563" i_stop="83421" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83420" e_stop="83223" e_length="198"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="83222" i_stop="81264" i_length="1959"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81263" e_stop="80588" e_length="676"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80587" i_stop="80501" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.643">
            <gDNA_exon_boundary e_start="80500" e_stop="80473" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91016" stop="90898"/>
              <exon start="86916" stop="85999"/>
              <exon start="84599" stop="84231"/>
              <exon start="84088" stop="83822"/>
              <exon start="83691" stop="83564"/>
              <exon start="83420" stop="83223"/>
              <exon start="81263" stop="80588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90971" stop="90898"/>
              <exon start="86916" stop="85999"/>
              <exon start="84599" stop="84231"/>
              <exon start="84088" stop="83822"/>
              <exon start="83691" stop="83564"/>
              <exon start="83420" stop="83223"/>
              <exon start="81263" stop="80588"/>
              <exon start="80500" stop="80473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90948" stop="90898"/>
              <exon start="86916" stop="86704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558503" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86435" stop="85999"/>
              <exon start="84599" stop="84251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86377" stop="85999"/>
              <exon start="84599" stop="84366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86377" stop="86173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86135" stop="85999"/>
              <exon start="84599" stop="84308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84518" stop="84231"/>
              <exon start="84088" stop="83822"/>
              <exon start="83691" stop="83564"/>
              <exon start="83420" stop="83405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83849" stop="83822"/>
              <exon start="83691" stop="83564"/>
              <exon start="83420" stop="83223"/>
              <exon start="81263" stop="81070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81197" stop="80640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81197" stop="80652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81190" stop="80590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT : TTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG : GTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG : GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG : ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAG : GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG : TGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTA : AGAAGCAAACAGCAAATAACAAAACTAA</gDNA_template>
            <first_frame> *  P  T  P  L  F  H  F  P  F  *  S  S  S  I  F  I  T  F  F  R  P  N  F  F  F  F  W  P  R  W  D  L  F  S  G  *  I  A  F :   Y  L  P  S  W  S  H  V  T  A  S  L  T  H  S  C  L  L  T  T  C  *  *  S  I  S  T  F  L  I  F  S  *  H  L  L  I  S  P  F  Q  W  S  *  Y  T  S  L  R  S  L  L  S  F  H  I  D  G  F  L  C  S  S  V  L  S  *  F  F  V  E  Q  P  I  L  S  T  Y  G  H  L  I  C  I  Q  G  M  W  Q  *  *  *  L  L  Q  R  P  *  L  H  W  C  H  V  *  L  L  S  C  L  S  T  S  F  L  I  Y  *  V  S  K  L  E  N  C  S  *  K  R  K  L  H  S  L  T  V  K  W  V  L  F  G  L  R  R  R  Q  V  D  M  L  E  C  *  L  M  K  S  E  A  L  L  I  D  I  L  F  *  R  L  H  L  L  S  *  E  E  H  W  H  W  K  S  V  H  Y  G  C  Q  H  V  L  D  *  S  F  S  F  L  T  L  Y  D  T  K  I  Q  L  D  *  L  Y  P  F  N  F  L  *  S  I  K  F  S  V  Q  I  M  S  *  K  Y  H  Q  I  L  L  S  Q  D  F  D  L  L  G  N  T  C  L  V  R  W  L  L  S  G  F  H  F  C  I  C  R  T  F  R  L  M  I  G  L  N  F  Q  Q  S  A  M  L  *  W  F  *  C  F  L  Q  T  V  Q  D  N  G  M  F  M  S  W  S  L  L  K  W  *  L  I  R :   L  L  L  L  F  H  M  L  L  Y  *  K  N  Q  *  G  L  G  I  F  L  W  S  R  M  W  L  L  I  W  Q  E  E  K  Q  K  W  L  F  V  H  V  M  I  S  W  L  L  *  I  M  K  *  E  L  P  C  M  Q  *  L  H  F  L  P  Y  Y  K  K  L  I  *  L  Q  S  N  V  *  W  L  K  Q  S  S  K  A  A  T  F  *  Q  R  S  S  T  M  S  W  I  F  Q  G  *  R  M  E  V  F  N  L  I  L  A  L  S  I  S  M  L  Y  L  E  R :   S  I  A  *  S  S  L  L  H  L  *  K  S  C  S  S  H  L  V  C  R  Q  I  C  R  N  M  *  L  G  M  K  N  G  *  C  K  F  S  *  T  L  L  A  M  L  *  S  S  Q  R  K  A  T  Y  Q  S  P  L  L  L  Q  N  Q  T  L  *  E  I  L  E  P  L  N  F  L  L  C  L  V  K  I  T  S  I  Y  G  C  R :   *  K  I  R  G  *  E  L  H  H  R  I  F  P  T  C  L  A  S  L  H  K  A  K  R  *  Q  L  Q  I  L  V  A  L  G  L  V  L  Q  F  V  R   : G  L  *  I  L  W  K  D  I  F  G  L  K  V  K  V  L  A  R  G  L  L  L  Y  L  S  L  N  L  A  F  L  D  V  Q  M  N  L  S  S  P  L  *  P  N  C  Q  Q  I  T  R  R  *  V  F  K  D  *  R  F  W  *  W  M  R  M   : V  L  A  G  W  *  P  K  V  C  L  H  T  L  D  V  M  *  L  L  L  A  H  A  M  S  A  *  E  L  L  H  M  N  T  R  *  L  S  W  M  S  A  C  K  V  *  T  V  T  K  L  L  *  *  Y  M  K  G  L  G  N  V  T  V  G  H  L  L  W  H  *  R  G  T  Q  T  E  L  R  K  K  T  A  *  E  L  V  W  M  E  L  S  *  N  L  C  Q  C  I  K  *  E  V  F  Y  L  S  S  *  N  M  E  L  Y  L  N  L  S  E  C  R  R  K  I  C  S  N  H  M  K  N  S  P  K  C  T  R  R  C  I  *  F  S  S  L  D  F  L  V  D  N  T  I  Y  H  L  K  K  V  Y  V  T  R  R  C  S  R  H  S  T  N  L  *  K  G  V  D  F  S  T  T  R  S  V  H  I  P  W  N  F  V  *  D  T  D  I  *  H  N  P  S  F  T  *  N  I  R  N  F  I  A  L  A  *  H  N  N  R  L  L  C  V  F  F  * :   E  A  N  S  K  *  Q  N  * </first_frame>
            <second_frame>  S  Q  L  H  C  F  T  F  P  F  D  H  H  Q  S  S  S  L  F  F  A  P  I  F  F  F  F  G  H  D  G  I  S  S  P  D  E  S  P   : F  I  F  H  R  G  V  M  *  L  H  H  *  P  T  V  A  C  *  R  L  A  N  E  V  S  V  H  F  *  F  F  H  S  T  C  L  F  L  H  S  S  G  V  D  I  L  R  *  E  V  C  C  L  S  I  *  M  G  S  C  A  V  R  C  F  H  S  S  L  W  S  N  P  S  Y  Q  L  M  D  I  *  Y  A  Y  K  E  C  G  N  S  N  D  Y  C  K  G  L  D  C  T  G  V  M  Y  N  C  S  H  A  C  P  H  H  S  *  F  I  K  C  Q  N  *  R  T  V  L  E  K  E  S  C  T  A  *  P  *  N  G  Y  Y  S  D  S  G  G  D  R  *  T  C  *  N  A  N  S  *  N  P  K  H  S  *  *  T  Y  Y  F  K  D  Y  T  C  *  A  R  K  N  I  G  I  G  R  V  C  I  M  D  A  N  T  Y  W  T  R  A  S  A  F  L  H  F  T  T  P  K  S  S  W  I  N  C  T  H  S  T  S  C  N  Q  S  S  F  R  Y  K  S  C  R  E  N  I  T  K  F  S  C  R  K  T  S  T  C  W  E  I  H  A  W  *  G  G  C  C  Q  G  S  T  S  A  S  V  E  L  S  D  *  *  L  A  *  T  F  N  K  A  L  C  F  N  G  S  D  A  S  F  R  Q  C  K  T  M  A  C  S  *  A  G  A  C  *  S  G  S  *  S   : G  C  C  C  S  F  T  C  C  Y  I  R  R  I  N  E  G  *  G  S  S  Y  G  A  E  C  G  S  *  S  G  K  K  R  S  R  N  G  C  S  C  T  *  *  F  L  G  C  Y  E  S  *  N  E  N  S  H  A  C  N  N  C  T  F  F  L  T  T  R  N  *  S  N  S  R  A  T  S  D  G  *  N  N  P  Q  K  Q  Q  P  F  S  N  A  H  Q  R  C  L  G  S  F  K  A  R  G  W  K  S  S  T  *  Y  W  H  F  Q  S  P  C  F  I  *  R   : G  P  *  L  N  Q  A  Y  C  I  C  E  K  A  V  R  H  T  *  F  V  V  R  F  A  G  I  C  N  W  G  *  K  T  V  N  A  N  S  L  K  R  C  W  Q  C  C  K  V  L  K  G  R  Q  R  I  N  L  R  F  C  C  K  I  R  L  F  K  R  S  *  S  P  *  I  F  C  C  A  *  *  K  S  L  L  F  T  G  A   : D  K  R  Y  G  D  R  N  Y  T  T  G  Y  S  Q  P  V  *  Q  V  Y  T  K  P  S  A  S  N  Y  K  F  W  W  H  W  A  W  S  C  N  L  *  E  :  V  C  E  S  Y  G  R  T  Y  L  D  *  K  *  R  S  W  Q  G  V  Y  C  Y  I  Y  H  *  T  W  H  S  W  T  C  K  *  I  *  A  P  L  C  D  Q  I  A  S  K  S  H  A  D  E  F  S  R  I  K  G  F  G  D  G  *  E  W  :  C  *  Q  D  G  N  Q  R  S  A  Y  T  P  W  M  *  C  N  Y  C  W  L  T  R  *  V  L  E  S  C  Y  T  *  T  Q  G  S  Y  H  G  C  Q  H  A  R  Y  R  L  L  R  S  C  C  S  D  T  *  K  V  W  E  T  S  R  *  A  T  Y  C  G  I  N  G  E  H  R  Q  S  Y  E  R  K  L  H  E  S  W  Y  G  W  S  Y  P  K  T  C  V  S  V  *  N  E  K  C  F  I  *  A  L  R  T  W  S  C  T  *  I  L  V  N  V  G  G  K  Y  A  A  T  I  *  K  I  H  P  N  A  R  G  V  V  Y  S  S  R  L  W  I  S  W  W  I  T  Q  Y  I  T  *  R  R  C  M  *  R  D  V  A  R  G  I  Q  Q  I  C  R  K  E  L  I  F  P  L  P  E  V  F  I  F  H  G  T  L  Y  K  I  L  I  F  D  T  T  L  H  L  L  E  T  L  E  T  L  L  P  W  L  D  T  T  I  D  Y  Y  V  F  F  F   : K  K  Q  T  A  N  N  K  T   </second_frame>
            <third_frame>   A  N  S  I  V  S  L  S  L  L  I  I  I  N  L  H  H  F  F  S  P  Q  F  F  F  F  L  A  T  M  G  S  L  L  R  M  N  R  L  :  L  S  S  I  V  E  S  C  N  C  I  I  D  P  Q  L  P  A  D  D  L  L  M  K  Y  Q  Y  I  S  D  F  F  I  A  L  A  Y  F  S  I  P  V  E  L  I  Y  F  V  K  K  S  A  V  F  P  Y  R  W  V  L  V  Q  F  G  A  F  I  V  L  C  G  A  T  H  L  I  N  L  W  T  F  N  M  H  T  R  N  V  A  I  V  M  T  T  A  K  A  L  T  A  L  V  S  C  I  T  A  L  M  L  V  H  I  I  P  D  L  L  S  V  K  T  R  E  L  F  L  K  K  K  A  A  Q  L  D  R  E  M  G  I  I  R  T  Q  E  E  T  G  R  H  V  R  M  L  T  H  E  I  R  S  T  L  D  R  H  T  I  L  K  T  T  L  V  E  L  G  R  T  L  A  L  E  E  C  A  L  W  M  P  T  R  T  G  L  E  L  Q  L  S  Y  T  L  R  H  Q  N  P  V  G  L  T  V  P  I  Q  L  P  V  I  N  Q  V  F  G  T  N  H  V  V  K  I  S  P  N  S  P  V  A  R  L  R  P  A  G  K  Y  M  P  G  E  V  V  A  V  R  V  P  L  L  H  L  S  N  F  Q  I  N  D  W  P  E  L  S  T  K  R  Y  A  L  M  V  L  M  L  P  S  D  S  A  R  Q  W  H  V  H  E  L  E  L  V  E  V  V  A  D  Q  :  V  A  V  A  L  S  H  A  A  I  L  E  E  S  M  R  A  R  D  L  L  M  E  Q  N  V  A  L  D  L  A  R  R  E  A  E  M  A  V  R  A  R  N  D  F  L  A  V  M  N  H  E  M  R  T  P  M  H  A  I  I  A  L  S  S  L  L  Q  E  T  D  L  T  P  E  Q  R  L  M  V  E  T  I  L  K  S  S  N  L  L  A  T  L  I  N  D  V  L  D  L  S  R  L  E  D  G  S  L  Q  L  D  I  G  T  F  N  L  H  A  L  F  R  E  :  V  H  S  L  I  K  P  I  A  S  V  K  K  L  F  V  T  L  S  L  S  S  D  L  P  E  Y  V  I  G  D  E  K  R  L  M  Q  I  L  L  N  V  V  G  N  A  V  K  F  S  K  E  G  N  V  S  I  S  A  F  V  A  K  S  D  S  L  R  D  P  R  A  P  E  F  F  A  V  P  S  E  N  H  F  Y  L  R  V  Q  :  I  K  D  T  G  I  G  I  T  P  Q  D  I  P  N  L  F  S  K  F  T  Q  S  Q  A  L  A  T  T  N  S  G  G  T  G  L  G  L  A  I  C  K  R :   F  V  N  L  M  E  G  H  I  W  I  E  S  E  G  L  G  K  G  S  T  A  I  F  I  I  K  L  G  I  P  G  R  A  N  E  S  K  L  P  F  V  T  K  L  P  A  N  H  T  Q  M  S  F  Q  G  L  K  V  L  V  M  D  E  N  G :   V  S  R  M  V  T  K  G  L  L  T  H  L  G  C  D  V  T  T  V  G  S  R  D  E  C  L  R  V  V  T  H  E  H  K  V  V  I  M  D  V  S  M  Q  G  I  D  C  Y  E  V  A  V  V  I  H  E  R  F  G  K  R  H  G  R  P  L  I  V  A  L  T  G  N  T  D  R  V  T  K  E  N  C  M  R  V  G  M  D  G  V  I  L  K  P  V  S  V  Y  K  M  R  S  V  L  S  E  L  L  E  H  G  V  V  L  E  S  *  *  M  *  E  E  N  M  Q  Q  P  Y  E  K  F  T  Q  M  H  E  A  L  Y  I  V  L  V  F  G  F  L  G  G  *  H  N  I  S  L  E  E  G  V  C  N  A  T  L  L  E  A  F  N  K  F  V  E  R  S  *  F  F  H  Y  Q  K  C  S  Y  S  M  E  L  C  I  R  Y  *  Y  L  T  Q  P  F  I  Y  L  K  H  *  K  L  Y  C  L  G  L  T  Q  Q  *  I  I  M  C  F  F  L  :  R  S  K  Q  Q  I  T  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91014" stop="90898"/>
                    <exon start="86916" stop="85999"/>
                    <exon start="84599" stop="84231"/>
                    <exon start="84088" stop="83822"/>
                    <exon start="83691" stop="83564"/>
                    <exon start="83420" stop="83223"/>
                    <exon start="81263" stop="80909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2349</number_coding_nucleotides>
                  <number_encoded_amino_acids>783</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSIVSLSLLIIINLHHFFSPQFFFFLATMGSLLRMNRLLSSIVESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHTRNVAIVMTTAKALTALVSCITALMLVHIIPDLLSVKTRELFLKKKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKISPNSPVARLRPAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQALATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGIPGRANESKLPFVTKLPANHTQMSFQGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTHEHKVVIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVYKMRSVLSELLEHGVVLES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80777" stop="80588"/>
                    <exon start="80500" stop="80475"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDVARGIQQICRKELIFPLPEVFIFHGTLYKILIFDTTLHLLETLETLLPWLDTTIDYYVFFFKKQTANNKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80585" PGL_stop="81172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80585" e_stop="81172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="80585" e_stop="81172" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80585" stop="81172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAAAAAAAAACACATAATAATCTATTGTTGTGTCAAGCCAAGGCAATAAAGTTTCTAATGTTTCAAGTAAATGAAGGGTTGTGTCAAATATCAGTATCTTATACAAAGTTCCATGGAATATGAACACTTCTGGTAGTGGAAAAATCAACTCCTTTCTACAAATTTGTTGAATGCCTCGAGCAACGTCGCGTTACATACACCTTCTTCAAGTGATATATTGTGTTATCCACCAAGAAATCCAAAGACGAGAACTATATACAACGCCTCGTGCATTTGGGTGAATTTTTCATATGGTTGCTGCATATTTTCCTCCTACATTCACTAAGATTCAAGTACAACTCCATGTTCTAAGAGCTCAGATAAAACACTTCTCATTTTATACACTGACACAGGTTTTAGGATAACTCCATCCATACCAACTCTCATGCAGTTTTCTTTCGTAACTCTGTCTGTGTTCCCCGTTAATGCCACAATAAGTGGCCTACCGTGACGTTTCCCAAACCTTTCATGTATCACTACAGCAACTTCGTAACAGTCTATACCTTGCATGCTGACATCCATGATAACTACCTTGTGTTCATGTGT</gDNA_template>
            <first_frame> N  *  K  K  T  H  N  N  L  L  L  C  Q  A  K  A  I  K  F  L  M  F  Q  V  N  E  G  L  C  Q  I  S  V  S  Y  T  K  F  H  G  I  *  T  L  L  V  V  E  K  S  T  P  F  Y  K  F  V  E  C  L  E  Q  R  R  V  T  Y  T  F  F  K  *  Y  I  V  L  S  T  K  K  S  K  D  E  N  Y  I  Q  R  L  V  H  L  G  E  F  F  I  W  L  L  H  I  F  L  L  H  S  L  R  F  K  Y  N  S  M  F  *  E  L  R  *  N  T  S  H  F  I  H  *  H  R  F  *  D  N  S  I  H  T  N  S  H  A  V  F  F  R  N  S  V  C  V  P  R  *  C  H  N  K  W  P  T  V  T  F  P  K  P  F  M  Y  H  Y  S  N  F  V  T  V  Y  T  L  H  A  D  I  H  D  N  Y  L  V  F  M  C </first_frame>
            <second_frame>  I  K  K  K  H  I  I  I  Y  C  C  V  K  P  R  Q  *  S  F  *  C  F  K  *  M  K  G  C  V  K  Y  Q  Y  L  I  Q  S  S  M  E  Y  E  H  F  W  *  W  K  N  Q  L  L  S  T  N  L  L  N  A  S  S  N  V  A  L  H  T  P  S  S  S  D  I  L  C  Y  P  P  R  N  P  K  T  R  T  I  Y  N  A  S  C  I  W  V  N  F  S  Y  G  C  C  I  F  S  S  Y  I  H  *  D  S  S  T  T  P  C  S  K  S  S  D  K  T  L  L  I  L  Y  T  D  T  G  F  R  I  T  P  S  I  P  T  L  M  Q  F  S  F  V  T  L  S  V  F  P  V  N  A  T  I  S  G  L  P  *  R  F  P  N  L  S  C  I  T  T  A  T  S  *  Q  S  I  P  C  M  L  T  S  M  I  T  T  L  C  S  C   </second_frame>
            <third_frame>   L  K  K  N  T  *  *  S  I  V  V  S  S  Q  G  N  K  V  S  N  V  S  S  K  *  R  V  V  S  N  I  S  I  L  Y  K  V  P  W  N  M  N  T  S  G  S  G  K  I  N  S  F  L  Q  I  C  *  M  P  R  A  T  S  R  Y  I  H  L  L  Q  V  I  Y  C  V  I  H  Q  E  I  Q  R  R  E  L  Y  T  T  P  R  A  F  G  *  I  F  H  M  V  A  A  Y  F  P  P  T  F  T  K  I  Q  V  Q  L  H  V  L  R  A  Q  I  K  H  F  S  F  Y  T  L  T  Q  V  L  G  *  L  H  P  Y  Q  L  S  C  S  F  L  S  *  L  C  L  C  S  P  L  M  P  Q  *  V  A  Y  R  D  V  S  Q  T  F  H  V  S  L  Q  Q  L  R  N  S  L  Y  L  A  C  *  H  P  *  *  L  P  C  V  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0054D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92277" PGL_stop="93841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92277" e_stop="92685"/>
            <exon e_start="93213" e_stop="93841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.242" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92277" e_stop="92685" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.242">
            <gDNA_intron_boundary i_start="92686" i_stop="93212" i_length="527"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="93213" e_stop="93841" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92277" stop="92685"/>
              <exon start="93213" stop="93426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92277" stop="92685"/>
              <exon start="93213" stop="93424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92278" stop="92685"/>
              <exon start="93213" stop="93535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92278" stop="92685"/>
              <exon start="93213" stop="93378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92357" stop="92685"/>
              <exon start="93213" stop="93539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92365" stop="92685"/>
              <exon start="93213" stop="93743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93245" stop="93841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG : GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATATGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGTAATAATACTAGTCGATACGATTAAATGTTGAAATCACGTAAA</gDNA_template>
            <first_frame> K  N  H  K  N  P  Q  H  S  *  L  P  L  L  L  T  S  L  L  I  S  L  T  F  Q  Q  K  K  K  H  D  T  R  R  R  S  C  T  F  R  L  L  G  *  S  F  W  N  N  G  K  N  C  P  S  *  K  G  S  Q  F  H  P  Q  V  *  G  F  V  *  *  K  S  F  A  F  G  N  E  P  G  S  S  Q  N  T  G  S  C  S  Q  G  *  I  Y  L  *  I  K  Y  H  Y  S  I  Y  *  *  D  L  E  K  *  F  S  L  I  A  L  *  T  L  S  K  S  *  S  *  V  L  G  *  L  Y  Q  *  K   : G  T  W  V  K  C  K  G  M  D  G  A  N  *  R  A  R  K  W  Q  E  R  T  C  R  M  F  K  V  F  G  R  R  T  W  R  *  T  L  F  W  R  R  C  I  W  I  C  R  H  C  T  C  S  F  L  Q  L  V  H  C  L  Q  D  L  C  K  F  Q  H  N  *  N  T  M  P  Q  V  S  D  V  G  R  K  V  F  E  *  R  L  S  I  Q  V  T  S  Y  F  K  S  S  L  P  S  L  F  G  F  Q  E  R  L  V  I  T  W  L  I  N  I  E  M  D  S  E  F  Y  I  L  M  I  G  Y  H  I  T  Y  F  E  M  G  S  Y  N  E  L  *  E  G  L  I  I  *  R  L  P  Y  *  S  I  H  L  H  I  E  V  T  *  M  I  N  M  N  I  N  *  *  K  V  Y  L  Y  E  R  T  *  V  H  Y  L  C  I  H  L  P  C  N  N  T  S  R  Y  D  *  M  L  K  S  R  K </first_frame>
            <second_frame>  R  I  T  K  T  L  N  T  L  N  Y  L  F  F  L  Q  V  Y  *  Y  P  *  L  F  N  K  K  K  N  M  T  Q  E  E  E  V  V  L  L  D  Y  W  A  S  P  F  G  T  M  A  R  I  A  L  V  E  K  G  V  N  F  I  H  K  F  E  D  L  S  N  K  S  P  L  L  L  E  M  N  P  V  H  H  K  I  P  V  L  V  H  K  G  K  S  I  C  E  S  N  I  I  I  Q  Y  I  D  E  I  W  K  N  N  S  P  L  L  P  Y  E  P  Y  Q  R  A  K  A  R  F  L  V  D  F  I  N  K  K  :  V  H  G  S  S  V  K  V  W  M  G  Q  I  E  E  Q  E  N  G  K  K  E  L  V  E  C  S  K  F  L  E  E  E  L  G  D  K  L  Y  F  G  G  D  V  F  G  F  V  D  I  A  L  V  P  F  Y  N  W  F  I  V  F  K  T  F  A  N  F  N  T  I  E  I  Q  C  P  K  L  V  M  W  G  E  R  C  L  N  R  D  S  V  S  K  S  L  P  T  S  N  Q  V  Y  Q  A  Y  L  D  F  K  K  G  W  *  S  H  G  *  *  I  S  R  W  I  Q  N  F  I  F  *  *  L  D  I  I  S  L  I  L  R  W  D  H  I  M  S  C  E  R  V  *  *  F  N  V  Y  L  I  S  R  Y  I  C  I  L  K  *  R  K  *  *  I  *  I  L  I  D  K  K  C  I  Y  M  K  E  H  E  F  T  I  Y  V  F  I  F  L  V  I  I  L  V  D  T  I  K  C  *  N  H  V   </second_frame>
            <third_frame>   E  S  Q  K  P  S  T  L  L  I  T  S  S  S  Y  K  S  T  N  I  P  N  F  S  T  K  K  K  T  *  H  K  K  K  K  L  Y  F  *  I  I  G  L  V  L  L  E  Q  W  Q  E  L  P  *  L  K  R  E  S  I  S  S  T  S  L  R  I  C  L  I  K  V  L  C  F  W  K  *  T  R  F  I  T  K  Y  R  F  L  F  T  R  V  N  L  F  V  N  Q  I  S  L  F  N  I  L  M  R  F  G  K  I  I  L  P  Y  C  P  M  N  L  I  K  E  L  K  L  G  S  W  L  T  L  S  I  K  R :   Y  M  G  Q  V  *  R  Y  G  W  G  K  L  K  S  K  K  M  A  R  K  N  L  *  N  V  Q  S  F  W  K  K  N  L  E  I  N  F  I  L  E  E  M  Y  L  D  L  *  T  L  H  L  F  L  S  T  I  G  S  L  S  S  R  P  L  Q  I  S  T  Q  L  K  Y  N  A  P  S  *  *  C  G  E  K  G  V  *  I  E  T  Q  Y  P  S  H  F  L  L  Q  I  K  S  T  K  L  I  W  I  S  R  K  V  G  D  H  M  V  N  K  Y  R  D  G  F  R  I  L  Y  F  N  D  W  I  S  Y  H  L  F  *  D  G  I  I  *  *  V  V  R  G  S  N  N  L  T  S  T  L  L  V  D  T  F  A  Y  *  S  N  V  N  D  K  Y  E  Y  *  L  I  K  S  V  F  I  *  K  N  M  S  S  L  S  M  Y  S  S  S  L  *  *  Y  *  S  I  R  L  N  V  E  I  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92344" stop="92685"/>
                    <exon start="93213" stop="93551"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNKKKNMTQEEEVVLLDYWASPFGTMARIALVEKGVNFIHKFEDLSNKSPLLLEMNPVHHKIPVLVHKGKSICESNIIIQYIDEIWKNNSPLLPYEPYQRAKARFLVDFINKKVHGSSVKVWMGQIEEQENGKKELVECSKFLEEELGDKLYFGGDVFGFVDIALVPFYNWFIVFKTFANFNTIEIQCPKLVMWGERCLNRDSVSKSLPTSNQVYQAYLDFKKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94607" PGL_stop="96156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94607" e_stop="94992"/>
            <exon e_start="95546" e_stop="96156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94607" e_stop="94992" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="95546" e_stop="96156" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94607" stop="94992"/>
              <exon start="95546" stop="96016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94622" stop="94992"/>
              <exon start="95546" stop="96015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94627" stop="94992"/>
              <exon start="95546" stop="95958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94636" stop="94992"/>
              <exon start="95546" stop="95886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94639" stop="94992"/>
              <exon start="95546" stop="95754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94644" stop="94992"/>
              <exon start="95546" stop="95811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94645" stop="94992"/>
              <exon start="95546" stop="95883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94649" stop="94992"/>
              <exon start="95546" stop="95733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94656" stop="94992"/>
              <exon start="95546" stop="95680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94668" stop="94959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94992"/>
              <exon start="95546" stop="95713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94682" stop="94992"/>
              <exon start="95546" stop="95886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94690" stop="94992"/>
              <exon start="95546" stop="95753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94707" stop="94992"/>
              <exon start="95546" stop="95932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94707" stop="94992"/>
              <exon start="95546" stop="95918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94707" stop="94992"/>
              <exon start="95546" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94784" stop="94992"/>
              <exon start="95546" stop="95670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94860" stop="94992"/>
              <exon start="95546" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATTTAAGTGTTCATCACATATATATATTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG : GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</gDNA_template>
            <first_frame> S  I  *  V  F  I  T  Y  I  Y  F  N  F  I  *  Y  I  S  F  N  Y  I  K  K  *  V  M  K  L  F  F  *  V  L  M  *  V  C  L  V  *  G  *  E  L  H  Y  M  K  K  G  F  N  M  N  I  K  R  K  I  *  V  I  K  V  N  F  Y  Y  K  *  I  Q  F  I  R  K  F  Q  C  *  F  I  M  E  N  Q  F  V  S  H  L  *  L  L  S  T  *  M  K  F  G  R  T  N  L  L  *  C  L  L  I  L  I  R  G  L  K  L  G  F  G  L  I  L  L  T  K  R :   S  M  I  A  E  R  E  Y  G  L  Q  K  E  K  I  K  R  Q  P  R  K  N  S  *  N  T  *  N  Y  W  K  E  N  *  E  I  R  H  I  S  M  E  K  I  L  D  L  W  I  W  L  *  F  L  S  I  V  G  S  Q  L  L  R  N  L  G  I  L  T  *  R  K  S  V  Q  S  L  W  H  G  P  T  N  V  Y  I  K  I  A  S  P  N  L  *  R  N  Q  I  K  F  M  S  M  C  *  K  *  N  N  T  L  A  F  H  R  E  I  Y  E  E  A  R  S  I  L  W  S  F  R  S  I  R  I  N  R  L  D  E  V  Q  L  *  R  Y  C  Y  V  *  *  L  V  C  F  I  F  *  K  V  M  E  L  S  *  N  K  C  C  *  S  I  L  V  F  T  V  C  Y  *  G  M  D  V  F  L  V  *  *  N  Y  F  R  *  K  G  D  F  I  I  L  *  N  F  Y  </first_frame>
            <second_frame>  L  F  K  C  S  S  H  I  Y  I  L  I  S  S  S  I  Y  L  L  I  I  S  K  N  E  *  *  S  C  S  F  E  C  L  C  E  Y  V  W  Y  E  G  K  N  C  I  T  *  K  R  D  S  I  *  I  *  R  G  R  F  E  *  *  K  *  T  F  I  T  N  E  S  N  S  *  E  N  S  S  V  N  S  *  W  K  T  N  L  *  V  T  Y  N  C  *  V  H  R  *  S  L  E  G  Q  I  S  F  D  A  F  *  S  L  *  E  G  S  S  *  V  L  G  *  F  Y  *  Q  K   : G  L  *  *  R  K  E  N  M  G  Y  K  R  R  R  S  R  G  S  Q  E  R  I  H  R  I  P  K  T  I  G  R  R  I  R  R  *  D  I  F  Q  W  R  K  F  W  I  C  G  F  G  F  N  S  F  L  *  L  V  P  N  F  *  E  I  W  E  F  *  H  R  E  R  V  S  K  V  C  G  M  G  Q  Q  M  Y  I  *  R  *  R  L  Q  I  S  S  G  I  K  *  S  L  *  V  C  V  K  N  E  T  T  P  W  P  S  I  E  K  Y  M  K  K  R  A  L  Y  Y  G  L  F  V  L  F  V  *  T  D  L  M  K  F  S  Y  E  D  I  V  T  Y  D  S  W  Y  V  L  F  F  E  K  L  W  S  C  H  R  I  N  V  V  N  L  Y  L  F  L  R  Y  A  I  K  G  W  M  S  S  W  C  N  K  T  T  L  G  R  K  E  I  L  *  Y  Y  K  T  F  I </second_frame>
            <third_frame>   Y  L  S  V  H  H  I  Y  I  F  *  F  H  L  V  Y  I  F  *  L  Y  Q  K  M  S  N  E  V  V  L  L  S  A  Y  V  S  M  F  G  M  R  V  R  I  A  L  H  E  K  G  I  Q  Y  E  Y  K  E  E  D  L  S  N  K  S  E  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  L  I  I  V  E  Y  I  D  E  V  W  K  D  K  S  P  L  M  P  F  N  P  Y  K  R  A  Q  A  R  F  W  A  D  F  I  D  K  K  :  V  Y  D  S  G  K  R  I  W  A  T  K  G  E  D  Q  E  A  A  K  K  E  F  I  E  Y  L  K  L  L  E  G  E  L  G  D  K  T  Y  F  N  G  E  N  F  G  F  V  D  L  A  L  I  P  F  Y  S  W  F  P  T  F  E  K  F  G  N  F  N  I  E  K  E  C  P  K  F  V  A  W  A  N  K  C  I  Y  K  D  S  V  S  K  S  L  A  E  S  N  K  V  Y  E  Y  V  L  K  M  K  Q  H  L  G  L  P  *  R  N  I  *  R  S  A  L  Y  I  M  V  F  S  F  Y  S  Y  K  Q  T  *  *  S  S  A  M  K  I  L  L  R  M  I  V  G  M  F  Y  F  L  K  S  Y  G  V  V  I  E  *  M  L  L  I  Y  T  C  F  Y  G  M  L  L  R  D  G  C  L  L  G  V  I  K  L  L  *  V  E  R  R  F  Y  N  I  I  K  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94666" stop="94992"/>
                    <exon start="95546" stop="95890"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQKMSNEVVLLSAYVSMFGMRVRIALHEKGIQYEYKEEDLSNKSELLLQMNPIHKKIPVLIHNGKPICESLIIVEYIDEVWKDKSPLMPFNPYKRAQARFWADFIDKKVYDSGKRIWATKGEDQEAAKKEFIEYLKLLEGELGDKTYFNGENFGFVDLALIPFYSWFPTFEKFGNFNIEKECPKFVAWANKCIYKDSVSKSLAESNKVYEYVLKMKQHLGLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94636" e_stop="94992"/>
            <exon e_start="95546" e_stop="95890"/>
            <exon e_start="95924" e_stop="96059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.794"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94636" e_stop="94992" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94993" i_stop="95545" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95546" e_stop="95890" e_length="345"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95891" i_stop="95923" i_length="33"/>
          </intron>
          <exon e_serial="3" e_score="0.794">
            <gDNA_exon_boundary e_start="95924" e_stop="96059" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94636" stop="94992"/>
              <exon start="95546" stop="95886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94639" stop="94992"/>
              <exon start="95546" stop="95754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94644" stop="94992"/>
              <exon start="95546" stop="95811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94645" stop="94992"/>
              <exon start="95546" stop="95883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94649" stop="94992"/>
              <exon start="95546" stop="95733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94656" stop="94992"/>
              <exon start="95546" stop="95680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94668" stop="94959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94680" stop="94992"/>
              <exon start="95546" stop="95713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94682" stop="94992"/>
              <exon start="95546" stop="95886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94690" stop="94992"/>
              <exon start="95546" stop="95753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94707" stop="94992"/>
              <exon start="95546" stop="95870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94741" stop="94992"/>
              <exon start="95546" stop="95890"/>
              <exon start="95924" stop="96059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94784" stop="94992"/>
              <exon start="95546" stop="95670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG : GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAG : GTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTT</gDNA_template>
            <first_frame> F  *  F  H  L  V  Y  I  F  *  L  Y  Q  K  M  S  N  E  V  V  L  L  S  A  Y  V  S  M  F  G  M  R  V  R  I  A  L  H  E  K  G  I  Q  Y  E  Y  K  E  E  D  L  S  N  K  S  E  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  L  I  I  V  E  Y  I  D  E  V  W  K  D  K  S  P  L  M  P  F  N  P  Y  K  R  A  Q  A  R  F  W  A  D  F  I  D  K  K  :  V  Y  D  S  G  K  R  I  W  A  T  K  G  E  D  Q  E  A  A  K  K  E  F  I  E  Y  L  K  L  L  E  G  E  L  G  D  K  T  Y  F  N  G  E  N  F  G  F  V  D  L  A  L  I  P  F  Y  S  W  F  P  T  F  E  K  F  G  N  F  N  I  E  K  E  C  P  K  F  V  A  W  A  N  K  C  I  Y  K  D  S  V  S  K  S  L  A  E  S  N  K  V  Y  E  Y  V  L  K  M  K  Q  H  L  G  L  P  *  :  V  F  S  F  Y  S  Y  K  Q  T  *  *  S  S  A  M  K  I  L  L  R  M  I  V  G  M  F  Y  F  L  K  S  Y  G  V  V  I  E  *  M  L  L  I  Y  T  </first_frame>
            <second_frame>  F  N  F  I  *  Y  I  S  F  N  Y  I  K  K  *  V  M  K  L  F  F  *  V  L  M  *  V  C  L  V  *  G  *  E  L  H  Y  M  K  K  G  F  N  M  N  I  K  R  K  I  *  V  I  K  V  N  F  Y  Y  K  *  I  Q  F  I  R  K  F  Q  C  *  F  I  M  E  N  Q  F  V  S  H  L  *  L  L  S  T  *  M  K  F  G  R  T  N  L  L  *  C  L  L  I  L  I  R  G  L  K  L  G  F  G  L  I  L  L  T  K  R :   S  M  I  A  E  R  E  Y  G  L  Q  K  E  K  I  K  R  Q  P  R  K  N  S  *  N  T  *  N  Y  W  K  E  N  *  E  I  R  H  I  S  M  E  K  I  L  D  L  W  I  W  L  *  F  L  S  I  V  G  S  Q  L  L  R  N  L  G  I  L  T  *  R  K  S  V  Q  S  L  W  H  G  P  T  N  V  Y  I  K  I  A  S  P  N  L  *  R  N  Q  I  K  F  M  S  M  C  *  K  *  N  N  T  L  A  F  H  R :   S  F  R  S  I  R  I  N  R  L  D  E  V  Q  L  *  R  Y  C  Y  V  *  *  L  V  C  F  I  F  *  K  V  M  E  L  S  *  N  K  C  C  *  S  I  L </second_frame>
            <third_frame>   L  I  S  S  S  I  Y  L  L  I  I  S  K  N  E  *  *  S  C  S  F  E  C  L  C  E  Y  V  W  Y  E  G  K  N  C  I  T  *  K  R  D  S  I  *  I  *  R  G  R  F  E  *  *  K  *  T  F  I  T  N  E  S  N  S  *  E  N  S  S  V  N  S  *  W  K  T  N  L  *  V  T  Y  N  C  *  V  H  R  *  S  L  E  G  Q  I  S  F  D  A  F  *  S  L  *  E  G  S  S  *  V  L  G  *  F  Y  *  Q  K   : G  L  *  *  R  K  E  N  M  G  Y  K  R  R  R  S  R  G  S  Q  E  R  I  H  R  I  P  K  T  I  G  R  R  I  R  R  *  D  I  F  Q  W  R  K  F  W  I  C  G  F  G  F  N  S  F  L  *  L  V  P  N  F  *  E  I  W  E  F  *  H  R  E  R  V  S  K  V  C  G  M  G  Q  Q  M  Y  I  *  R  *  R  L  Q  I  S  S  G  I  K  *  S  L  *  V  C  V  K  N  E  T  T  P  W  P  S  I   : G  L  F  V  L  F  V  *  T  D  L  M  K  F  S  Y  E  D  I  V  T  Y  D  S  W  Y  V  L  F  F  E  K  L  W  S  C  H  R  I  N  V  V  N  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94666" stop="94992"/>
                    <exon start="95546" stop="95890"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQKMSNEVVLLSAYVSMFGMRVRIALHEKGIQYEYKEEDLSNKSELLLQMNPIHKKIPVLIHNGKPICESLIIVEYIDEVWKDKSPLMPFNPYKRAQARFWADFIDKKVYDSGKRIWATKGEDQEAAKKEFIEYLKLLEGELGDKTYFNGENFGFVDLALIPFYSWFPTFEKFGNFNIEKECPKFVAWANKCIYKDSVSKSLAESNKVYEYVLKMKQHLGLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="104544" PGL_stop="105307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104544" e_stop="105307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="104544" e_stop="105307" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104544" stop="105307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCATTCTTCCCCTACTACCAATAGAGATCCTAACTTTCTCCATTCCCACGTTGACGCCAACTCTTCTGATGTTCTGTTGCATAGGAGACTTGAACTGCATTTTCTTCTGAAGACTTCGTCGCAGGACACTGTTGAGCTTCTTACTGGCTGTCTTAAGCTCTTTAGGACTATCCTGTGGAGTTGGTTCAGGTAAGCATTTTGAATCAGCTCCATCAGCATCTTCCATCCCCTCTGATTGAATTGATCTCAATGGAAAAAGTGGAGGAGGCAACTTAGGTACAGCTGATAGAGTGCGTATGGGAATTAGAGAGTTACGACGTGGAGCAGGTGTAGGAAGAATCCTGTGTGCAATGGGACACATAGAAGCTCTCCCTGACCTCTTTAGAACGACTGGTTGTTCATCAATATCTGGATTGTTTTCCTTGTTTTCTTTTTCTGTCAGGTCATAGTGCTTCAAAGCACAATCTACATTAGCAGAAGGCACCGAGAGTTTGTAGGAATTGTTCTCAGTTAGTGGTCGAGTTATATTAAGTGGGAACTTATTTTCATCGTAAGTCTTCAGAGCAGAAATTTTGCTGGCAAGTGGTAGCCTCGTAGGTGGTGCTGCATCTTCCTCCTCATTCTGTTGTCTGATATGCTGTTGCTGAAACTGTTCAGCAATTTTAGAGTCAACGTGCTGTCGAGCAAGTTTTCTCTCTACAAGAAGTTGTGCTTCTAGTTCTTTAATCTGCACATCATATTAACAGCCTAATCAGCTAAAATG</gDNA_template>
            <first_frame> A  I  L  P  L  L  P  I  E  I  L  T  F  S  I  P  T  L  T  P  T  L  L  M  F  C  C  I  G  D  L  N  C  I  F  F  *  R  L  R  R  R  T  L  L  S  F  L  L  A  V  L  S  S  L  G  L  S  C  G  V  G  S  G  K  H  F  E  S  A  P  S  A  S  S  I  P  S  D  *  I  D  L  N  G  K  S  G  G  G  N  L  G  T  A  D  R  V  R  M  G  I  R  E  L  R  R  G  A  G  V  G  R  I  L  C  A  M  G  H  I  E  A  L  P  D  L  F  R  T  T  G  C  S  S  I  S  G  L  F  S  L  F  S  F  S  V  R  S  *  C  F  K  A  Q  S  T  L  A  E  G  T  E  S  L  *  E  L  F  S  V  S  G  R  V  I  L  S  G  N  L  F  S  S  *  V  F  R  A  E  I  L  L  A  S  G  S  L  V  G  G  A  A  S  S  S  S  F  C  C  L  I  C  C  C  *  N  C  S  A  I  L  E  S  T  C  C  R  A  S  F  L  S  T  R  S  C  A  S  S  S  L  I  C  T  S  Y  *  Q  P  N  Q  L  K   </first_frame>
            <second_frame>  P  F  F  P  Y  Y  Q  *  R  S  *  L  S  P  F  P  R  *  R  Q  L  F  *  C  S  V  A  *  E  T  *  T  A  F  S  S  E  D  F  V  A  G  H  C  *  A  S  Y  W  L  S  *  A  L  *  D  Y  P  V  E  L  V  Q  V  S  I  L  N  Q  L  H  Q  H  L  P  S  P  L  I  E  L  I  S  M  E  K  V  E  E  A  T  *  V  Q  L  I  E  C  V  W  E  L  E  S  Y  D  V  E  Q  V  *  E  E  S  C  V  Q  W  D  T  *  K  L  S  L  T  S  L  E  R  L  V  V  H  Q  Y  L  D  C  F  P  C  F  L  F  L  S  G  H  S  A  S  K  H  N  L  H  *  Q  K  A  P  R  V  C  R  N  C  S  Q  L  V  V  E  L  Y  *  V  G  T  Y  F  H  R  K  S  S  E  Q  K  F  C  W  Q  V  V  A  S  *  V  V  L  H  L  P  P  H  S  V  V  *  Y  A  V  A  E  T  V  Q  Q  F  *  S  Q  R  A  V  E  Q  V  F  S  L  Q  E  V  V  L  L  V  L  *  S  A  H  H  I  N  S  L  I  S  *  N  </second_frame>
            <third_frame>   H  S  S  P  T  T  N  R  D  P  N  F  L  H  S  H  V  D  A  N  S  S  D  V  L  L  H  R  R  L  E  L  H  F  L  L  K  T  S  S  Q  D  T  V  E  L  L  T  G  C  L  K  L  F  R  T  I  L  W  S  W  F  R  *  A  F  *  I  S  S  I  S  I  F  H  P  L  *  L  N  *  S  Q  W  K  K  W  R  R  Q  L  R  Y  S  *  *  S  A  Y  G  N  *  R  V  T  T  W  S  R  C  R  K  N  P  V  C  N  G  T  H  R  S  S  P  *  P  L  *  N  D  W  L  F  I  N  I  W  I  V  F  L  V  F  F  F  C  Q  V  I  V  L  Q  S  T  I  Y  I  S  R  R  H  R  E  F  V  G  I  V  L  S  *  W  S  S  Y  I  K  W  E  L  I  F  I  V  S  L  Q  S  R  N  F  A  G  K  W  *  P  R  R  W  C  C  I  F  L  L  I  L  L  S  D  M  L  L  L  K  L  F  S  N  F  R  V  N  V  L  S  S  K  F  S  L  Y  K  K  L  C  F  *  F  F  N  L  H  I  I  L  T  A  *  S  A  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104784" stop="104993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDLNGKSGGGNLGTADRVRMGIRELRRGAGVGRILCAMGHIEALPDLFRTTGCSSISGLFSLFSFSVRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="106114" PGL_stop="104633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106114" e_stop="105956"/>
            <exon e_start="105872" e_stop="105835"/>
            <exon e_start="105749" e_stop="105586"/>
            <exon e_start="105486" e_stop="105361"/>
            <exon e_start="105271" e_stop="104633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.909" e_score="0.987"/>
          <exon-intron don_prob="0.934" acc_prob="0.968" e_score="0.974"/>
          <exon-intron don_prob="0.805" acc_prob="0.959" e_score="0.976"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.952"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="106114" e_stop="105956" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.909">
            <gDNA_intron_boundary i_start="105955" i_stop="105873" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="105872" e_stop="105835" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.968">
            <gDNA_intron_boundary i_start="105834" i_stop="105750" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="105749" e_stop="105586" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.805" acc_prob="0.959">
            <gDNA_intron_boundary i_start="105585" i_stop="105487" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="105486" e_stop="105361" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105360" i_stop="105272" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="105271" e_stop="104633" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106114" stop="105956"/>
              <exon start="105872" stop="105835"/>
              <exon start="105749" stop="105586"/>
              <exon start="105486" stop="105361"/>
              <exon start="105271" stop="105162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106112" stop="105956"/>
              <exon start="105872" stop="105835"/>
              <exon start="105749" stop="105586"/>
              <exon start="105486" stop="105361"/>
              <exon start="105271" stop="105210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106112" stop="105956"/>
              <exon start="105872" stop="105835"/>
              <exon start="105749" stop="105586"/>
              <exon start="105486" stop="105361"/>
              <exon start="105271" stop="105249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106108" stop="105956"/>
              <exon start="105872" stop="105835"/>
              <exon start="105749" stop="105586"/>
              <exon start="105486" stop="105380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105396" stop="105361"/>
              <exon start="105271" stop="104633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105396" stop="105361"/>
              <exon start="105271" stop="104731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTGTGGCTAATTGATCTAGCAGGAAGTGAGAGGATAGCTAAGACAGAAGTACAGGGTGAAAGGCTAAAAGAAACCCAAAATATAAACAGATCTCTTTCTGCCCTTGGAGATGTGATATCTTCACTTGCAACAAAAAGCGCCCATATTCCATTCCG : GAATTCGAAACTTACTCATTTGCTCCAAGACTCACTAG : GAGGAGATTCAAAAACATTGATGTTTGTACAGATCAGTCCTAATGAGAATGACTTGAGTGAGACTCTTTGCTCATTAAATTTTGCAAGTCGAGTTCGAGGTATAGAGCTAGGTCCAGCAAAAAAGCAAGTGGACAGTGTGGAGCTTCTGAAATACAAACAGATG : GTCGAAAAGGGCAAACAAGATATGAAGAACAAAGATGTTCAGATGAAAAAGATGGAGGATACAGTTCACGGTTTGGATATTAAATTAAAGGAAAAGGATATGAAAAACAAAAGCCTTCAGGACAAG : ATTAAAGAACTAGAAGCACAACTTCTTGTAGAGAGAAAACTTGCTCGACAGCACGTTGACTCTAAAATTGCTGAACAGTTTCAGCAACAGCATATCAGACAACAGAATGAGGAGGAAGATGCAGCACCACCTACGAGGCTACCACTTGCCAGCAAAATTTCTGCTCTGAAGACTTACGATGAAAATAAGTTCCCACTTAATATAACTCGACCACTAACTGAGAACAATTCCTACAAACTCTCGGTGCCTTCTGCTAATGTAGATTGTGCTTTGAAGCACTATGACCTGACAGAAAAAGAAAACAAGGAAAACAATCCAGATATTGATGAACAACCAGTCGTTCTAAAGAGGTCAGGGAGAGCTTCTATGTGTCCCATTGCACACAGGATTCTTCCTACACCTGCTCCACGTCGTAACTCTCTAATTCCCATACGCACTCTATCAGCTGTACCTAAGTTGCCTCCTCCACTTTTTCCATTGAGATCAATTCAATCAGAGGGGATGGAAGATGCTGATGGAGCTGATTCAAAATGCTTACCTGAACCAACTCCACAGGATAGTCCTAAAGAGCTTAAGACAGCCAGTAAGAAGCTCAACAGTGTCCTGCGACGAAGTCTTCAGAAGAAAATGCAGTTCAAG</gDNA_template>
            <first_frame> Q  T  V  A  N  *  S  S  R  K  *  E  D  S  *  D  R  S  T  G  *  K  A  K  R  N  P  K  Y  K  Q  I  S  F  C  P  W  R  C  D  I  F  T  C  N  K  K  R  P  Y  S  I  P  :  E  F  E  T  Y  S  F  A  P  R  L  T  R :   R  R  F  K  N  I  D  V  C  T  D  Q  S  *  *  E  *  L  E  *  D  S  L  L  I  K  F  C  K  S  S  S  R  Y  R  A  R  S  S  K  K  A  S  G  Q  C  G  A  S  E  I  Q  T  D   : G  R  K  G  Q  T  R  Y  E  E  Q  R  C  S  D  E  K  D  G  G  Y  S  S  R  F  G  Y  *  I  K  G  K  G  Y  E  K  Q  K  P  S  G  Q   : D  *  R  T  R  S  T  T  S  C  R  E  K  T  C  S  T  A  R  *  L  *  N  C  *  T  V  S  A  T  A  Y  Q  T  T  E  *  G  G  R  C  S  T  T  Y  E  A  T  T  C  Q  Q  N  F  C  S  E  D  L  R  *  K  *  V  P  T  *  Y  N  S  T  T  N  *  E  Q  F  L  Q  T  L  G  A  F  C  *  C  R  L  C  F  E  A  L  *  P  D  R  K  R  K  Q  G  K  Q  S  R  Y  *  *  T  T  S  R  S  K  E  V  R  E  S  F  Y  V  S  H  C  T  Q  D  S  S  Y  T  C  S  T  S  *  L  S  N  S  H  T  H  S  I  S  C  T  *  V  A  S  S  T  F  S  I  E  I  N  S  I  R  G  D  G  R  C  *  W  S  *  F  K  M  L  T  *  T  N  S  T  G  *  S  *  R  A  *  D  S  Q  *  E  A  Q  Q  C  P  A  T  K  S  S  E  E  N  A  V  Q  </first_frame>
            <second_frame>  K  L  W  L  I  D  L  A  G  S  E  R  I  A  K  T  E  V  Q  G  E  R  L  K  E  T  Q  N  I  N  R  S  L  S  A  L  G  D  V  I  S  S  L  A  T  K  S  A  H  I  P  F  R :   N  S  K  L  T  H  L  L  Q  D  S  L   : G  G  D  S  K  T  L  M  F  V  Q  I  S  P  N  E  N  D  L  S  E  T  L  C  S  L  N  F  A  S  R  V  R  G  I  E  L  G  P  A  K  K  Q  V  D  S  V  E  L  L  K  Y  K  Q  M  :  V  E  K  G  K  Q  D  M  K  N  K  D  V  Q  M  K  K  M  E  D  T  V  H  G  L  D  I  K  L  K  E  K  D  M  K  N  K  S  L  Q  D  K  :  I  K  E  L  E  A  Q  L  L  V  E  R  K  L  A  R  Q  H  V  D  S  K  I  A  E  Q  F  Q  Q  Q  H  I  R  Q  Q  N  E  E  E  D  A  A  P  P  T  R  L  P  L  A  S  K  I  S  A  L  K  T  Y  D  E  N  K  F  P  L  N  I  T  R  P  L  T  E  N  N  S  Y  K  L  S  V  P  S  A  N  V  D  C  A  L  K  H  Y  D  L  T  E  K  E  N  K  E  N  N  P  D  I  D  E  Q  P  V  V  L  K  R  S  G  R  A  S  M  C  P  I  A  H  R  I  L  P  T  P  A  P  R  R  N  S  L  I  P  I  R  T  L  S  A  V  P  K  L  P  P  P  L  F  P  L  R  S  I  Q  S  E  G  M  E  D  A  D  G  A  D  S  K  C  L  P  E  P  T  P  Q  D  S  P  K  E  L  K  T  A  S  K  K  L  N  S  V  L  R  R  S  L  Q  K  K  M  Q  F  K </second_frame>
            <third_frame>   N  C  G  *  L  I  *  Q  E  V  R  G  *  L  R  Q  K  Y  R  V  K  G  *  K  K  P  K  I  *  T  D  L  F  L  P  L  E  M  *  Y  L  H  L  Q  Q  K  A  P  I  F  H  S   : G  I  R  N  L  L  I  C  S  K  T  H  *  :  E  E  I  Q  K  H  *  C  L  Y  R  S  V  L  M  R  M  T  *  V  R  L  F  A  H  *  I  L  Q  V  E  F  E  V  *  S  *  V  Q  Q  K  S  K  W  T  V  W  S  F  *  N  T  N  R  W :   S  K  R  A  N  K  I  *  R  T  K  M  F  R  *  K  R  W  R  I  Q  F  T  V  W  I  L  N  *  R  K  R  I  *  K  T  K  A  F  R  T  R :   L  K  N  *  K  H  N  F  L  *  R  E  N  L  L  D  S  T  L  T  L  K  L  L  N  S  F  S  N  S  I  S  D  N  R  M  R  R  K  M  Q  H  H  L  R  G  Y  H  L  P  A  K  F  L  L  *  R  L  T  M  K  I  S  S  H  L  I  *  L  D  H  *  L  R  T  I  P  T  N  S  R  C  L  L  L  M  *  I  V  L  *  S  T  M  T  *  Q  K  K  K  T  R  K  T  I  Q  I  L  M  N  N  Q  S  F  *  R  G  Q  G  E  L  L  C  V  P  L  H  T  G  F  F  L  H  L  L  H  V  V  T  L  *  F  P  Y  A  L  Y  Q  L  Y  L  S  C  L  L  H  F  F  H  *  D  Q  F  N  Q  R  G  W  K  M  L  M  E  L  I  Q  N  A  Y  L  N  Q  L  H  R  I  V  L  K  S  L  R  Q  P  V  R  S  S  T  V  S  C  D  E  V  F  R  R  K  C  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106113" stop="105956"/>
                    <exon start="105872" stop="105835"/>
                    <exon start="105749" stop="105586"/>
                    <exon start="105486" stop="105361"/>
                    <exon start="105271" stop="104633"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLWLIDLAGSERIAKTEVQGERLKETQNINRSLSALGDVISSLATKSAHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGPAKKQVDSVELLKYKQMVEKGKQDMKNKDVQMKKMEDTVHGLDIKLKEKDMKNKSLQDKIKELEAQLLVERKLARQHVDSKIAEQFQQQHIRQQNEEEDAAPPTRLPLASKISALKTYDENKFPLNITRPLTENNSYKLSVPSANVDCALKHYDLTEKENKENNPDIDEQPVVLKRSGRASMCPIAHRILPTPAPRRNSLIPIRTLSAVPKLPPPLFPLRSIQSEGMEDADGADSKCLPEPTPQDSPKELKTASKKLNSVLRRSLQKKMQFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="106900" PGL_stop="106164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106900" e_stop="106648"/>
            <exon e_start="106415" e_stop="106254"/>
            <exon e_start="106171" e_stop="106164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="106900" e_stop="106648" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="106647" i_stop="106416" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106415" e_stop="106254" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106253" i_stop="106172" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106171" e_stop="106164" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106900" stop="106648"/>
              <exon start="106415" stop="106254"/>
              <exon start="106171" stop="106164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCAACCTCGGTTCTAGATGGGTACAATGCTTGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGTCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAGGATCTCAACAAGGCGTGAAAAG : GCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTG : CATACATT</gDNA_template>
            <first_frame> W  Q  P  R  F  *  M  G  T  M  L  A  Y  L  P  T  V  R  Q  V  L  A  R  H  L  Q  W  K  A  Q  K  N  L  V  G  S  I  T  E  L  L  R  S  Y  S  A  L  L  R  R  E  R  T  Q  F  G  M  K  Y  Q  *  A  S  W  K  Y  T  M  S  R  F  G  I  C  L  F  Q  D  L  N  K  A  *  K   : G  L  K  S  S  K  M  E  K  E  C  I  M  F  L  D  *  L  R  P  T  *  I  I  *  M  K  F  G  K  L  Y  E  L  V  A  M  R  G  Q  L  D  Q  P  M  Q  M  S  T  A  A  D  H  I   : A  Y  I </first_frame>
            <second_frame>  G  N  L  G  S  R  W  V  Q  C  L  H  I  C  L  R  S  D  R  Y  W  Q  D  I  Y  N  G  R  H  R  R  I  S  W  G  Q  L  P  N  S  *  G  A  I  P  H  Y  *  G  E  K  E  R  S  S  V  *  N  I  S  E  R  L  G  S  I  Q  *  A  D  S  G  F  A  C  F  R  I  S  T  R  R  E  K  :  A  *  N  Q  A  R  W  R  R  N  A  S  C  S  W  T  S  *  G  P  R  E  *  Y  E  *  S  L  G  S  F  T  N  W  *  Q  C  E  G  S  W  I  N  Q  C  K  *  A  Q  Q  P  I  T  L  :  H  T   </second_frame>
            <third_frame>   A  T  S  V  L  D  G  Y  N  A  C  I  F  A  Y  G  Q  T  G  T  G  K  T  F  T  M  E  G  T  E  E  S  R  G  V  N  Y  R  T  L  E  E  L  F  R  I  I  E  E  R  K  N  A  V  R  Y  E  I  S  V  S  V  L  E  V  Y  N  E  Q  I  R  D  L  L  V  S  G  S  Q  Q  G  V  K  R :   L  E  I  K  Q  D  G  E  G  M  H  H  V  P  G  L  V  E  A  H  V  N  N  M  N  E  V  W  E  A  L  R  T  G  S  N  A  R  A  V  G  S  T  N  A  N  E  H  S  S  R  S  H  C :   I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0054D17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106898" stop="106648"/>
                    <exon start="106415" stop="106254"/>
                    <exon start="106171" stop="106165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQQGVKRLEIKQDGEGMHHVPGLVEAHVNNMNEVWEALRTGSNARAVGSTNANEHSSRSHCIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="114747" PGL_stop="114900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114747" e_stop="114900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114747" e_stop="114900" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114747" stop="114900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAG</gDNA_template>
            <first_frame> L  S  V  C  S  S  S  T  Q  V  N  C  S  N  Q  K  T  K  D  G  N  T  G  I  D  L  F  I  I  Y  C  I  L  N  R  G  C  Q  T  N  S  R  R  K  T  F  P  I  S  N  Q  </first_frame>
            <second_frame>  *  V  C  V  H  L  Q  H  K  S  I  A  L  I  R  K  Q  K  M  A  T  Q  A  L  I  S  S  S  S  I  A  S  S  T  E  A  A  R  Q  I  L  G  G  R  P  F  Q  S  Q  I  K </second_frame>
            <third_frame>   E  C  V  F  I  F  N  T  S  Q  L  L  *  S  E  N  K  R  W  Q  H  R  H  *  S  L  H  H  L  L  H  P  Q  Q  R  L  P  D  K  F  *  E  E  D  L  S  N  L  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0054D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 295 chains have been computed
$ 
$ memory statistics:
$ 373704 bytes spliced alignments in total
$ 103 spliced alignments have been stored
$ 3628 bytes was the average size of a spliced alignment
$ 26496 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1558 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 334 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 14:30:24
-->
