<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 21:01:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E726459" ref_strand="+" ref_description="SGN-E726459 [LA11DE04]">
      <seq>caaaaactacaagtgtctctaatgcatccaactcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatagaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaagggaagatgctggaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="509" stop="3146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="809" g_stop="1275" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="570" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2846" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="857" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E726459" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="809" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTACAAGTGTCTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACT</genome_strand>
        <mrna_strand>CAAAAACTACAAGTGTCTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATAGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E341757" ref_strand="+" ref_description="SGN-E341757 [cTOF-9-I7]">
      <seq>aaaaactacaagtgtctctaatgcatccaactcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctaccttgaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattccaaaggagtagtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="510" stop="2938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="810" g_stop="1275" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="569" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2638" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="648" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E341757" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="810" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTACAAGTGTCTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGA</genome_strand>
        <mrna_strand>AAAAACTACAAGTGTCTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTTGAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCAAAGGAGTAGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E739073" ref_strand="+" ref_description="SGN-E739073 [LC16AB04]">
      <seq>ctctaatgcatccaactcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacataggtaaaaagaacatactatatatgtttgtgttttcattgtctcagttcagtgtacaaagcatctcgatataaatagtactaattaaacgtataggtcacacagagataactttgtttgttcaagaacttagtattttagcatgatcttgttatgcatagacatttcttttttacttgttccttatgtagttaagtgatagctaatacattatgtagttgcttaatttctcttgattagctaaaatctatgtttcgtgtaagggacaagtacaagaagggaagtaggaagaatcgatttgtagcaactacgatttgagttactagtcgttggaaagtctcacaagacggatgagctccgttttttttcatcatactatggtggaaaaacatctgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="525" stop="1972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="825" g_stop="1672" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E739073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="825" e_stop="1672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTT</genome_strand>
        <mrna_strand>CTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E736673" ref_strand="+" ref_description="SGN-E736673 [LC06CG10]">
      <seq>ctctaatgcatccaactcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacataggtaaaaagaacatactatatatgtttgtgttttcattgtctcagttcagtgtacaaagcatctcgatataaatagtactaattaaacgtataggtcacacagagataactttgtttgttcaagaacttagtattttagcatgatcttgttatgcatagacatttcttttttacttgttccttatgtagttaagtgatagctaatacattatgtagttgcttaatttctcttgattagctaaaatctatgtttcgtgtaagggacaagtacaagaagggaagtaagaagaatcgatttgtagcaactacgatttgagttactagtcgttggaaagtctcacaagacggatgagctccgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="525" stop="1939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="825" g_stop="1639" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E736673" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="825" e_stop="1639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTT</genome_strand>
        <mrna_strand>CTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAAGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E728908" ref_strand="+" ref_description="SGN-E728908 [LA19BD08]">
      <seq>tccaactcctttttnctncccaaaaancactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatgattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatanaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattatacggcgaaaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="535" stop="3131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="835" g_stop="1143" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1144" i_stop="2359" i_length="1216">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="413" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2831" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="685" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E728908" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="835" e_stop="1143"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTCCTTTTTCCT-CCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGA</genome_strand>
        <mrna_strand>TCCAACTCCTTTTTNCTNCCCAAAAANCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATANAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTATACGGCGAAAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E727069" ref_strand="+" ref_description="SGN-E727069 [LA13CE11]">
      <seq>ctcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatagaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaagggaagatgctggaccactgtttttcgaggtgacagaaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="540" stop="3170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="840" g_stop="1275" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="539" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2870" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="850" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E727069" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="840" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGAC</genome_strand>
        <mrna_strand>CTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATAGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E263538" ref_strand="+" ref_description="SGN-E263538 [cLEG-60-G12]">
      <seq>ctcctttttcctcccaaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatggaacaccacctaatattaacaaaatcccctggtttgaaattttgagaggaaaagatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="540" stop="3076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="840" g_stop="1275" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="539" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2776" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="755" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E263538" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="840" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGG</genome_strand>
        <mrna_strand>CTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTG-AAATTTTGAGAGGAAAAGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E726667" ref_strand="+" ref_description="SGN-E726667 [LA12BH12]">
      <seq>caaaaatcactcacaataatggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatagaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaaggggagatgctggaccactgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="554" stop="3151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="854" g_stop="1275" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="525" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2851" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="817" r_length="292" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E726667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="854" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTT</genome_strand>
        <mrna_strand>CAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATAGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGGAGATGCTGGACCACTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E249417" ref_strand="+" ref_description="SGN-E249417 [cLEF-50-N23]">
      <seq>atggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="572" stop="2919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="872" g_stop="1275" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="507" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="567" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E249417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="872" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGAT</genome_strand>
        <mrna_strand>ATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E343651" ref_strand="+" ref_description="SGN-E343651 [cTOF-20-J12]">
      <seq>atggctttacaacaaccatttctatctgaattactactccactcatcttcaattagaacaacactccccaaaagttcacttttttctctacaaatacctcaaagattcaatctttatcttcaaaataagcaaatcaagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacataggtaaaaagaacatactatatatgtttgtgttttcattgtctcagttcagtgtacaaagcatctcgatataaatagtactaattaaacgtataggtcacacagagataactttgtttgttcaagaacttagtattttagcatgatcttgttatgcatagacatttcttttttacttgttccttatgtagttaagtgatagctaatacattatgtagttgcttaatttctcttgattagctaaaatctatgtttcgtgtaagggacaagtacaagaagggaagtaggaagaatcgatttgtagcaactacgaattgagttactagtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="572" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="872" g_stop="1602" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E343651" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="872" e_stop="1602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGT</genome_strand>
        <mrna_strand>ATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGAATTGAGTTACTAGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E705101" ref_strand="+" ref_description="SGN-E705101 [FA26AF10]">
      <seq>aagaaacaaggaacaagttgttatgcaattgctgagaatcttgaagctgaggatcaaagtttgattttggaaaattcaagtttagatgagttgaggggacaaagggaaattgttggttatgattggactgaagaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatagaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaagggaagatgctggaccactgtttttcgaggtgacagaaaggactaaccgagggtttgcagggtggtggggtaaagaaagagatcaaggcaaagcaaactatactccgaacttcttacgttttgaatctccttgtgttcttcagaataatagagaaattgttgatgagagtggggagaagcattacttttcgggtcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="707" stop="3327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1007" g_stop="1275" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="372" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="3027" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="840" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E705101" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1007" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="3027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTT</genome_strand>
        <mrna_strand>AAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATAGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E700696" ref_strand="+" ref_description="SGN-E700696 [FA13DF02]">
      <seq>ttgctgagaatcttgaagctgaggatcacagtttgattttggaaaattccagtttagatgagttgaggggacaaagggaaattgttggttatgattgcactgaaaaatggtatcctttgtatttaaccaagaatgtacctaatgatgcacctttaagtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttacatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggacatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="735" stop="2911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1035" g_stop="1275" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2611" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="396" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E700696" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1035" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAA</genome_strand>
        <mrna_strand>TTGCTGAGAATCTTGAAGCTGAGGATCACAGTTTGATTTTGGAAAATTCCAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGCACTGAAAAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAAGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTACATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGACATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E214195" ref_strand="+" ref_description="SGN-E214195 [cLEC-77-M7]">
      <seq>taatgatgcacctttaggtcttactgtctttgataaacaagttgttttgtataaagatggaagtggtgaacttagatgctttgaagatagatgtccacatagattggccaaactctccgaagggcaactgtatgatggcaaactggaatgcttgtatcacggttggcagtttgacggagatggtaaatgtgtcaagataccacagctacctgaaaatgctaaaattcctcgatcagcttgtacgaagacatatgaaattcgggattcccaaggagtagtctggatatggatgtctcatggaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctccaaaaccttatggatcctgctcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="874" stop="3089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1174" g_stop="1275" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2360" g_stop="2462" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="205" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2560" g_stop="2789" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="435" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E214195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1174" e_stop="1275"/>
          <exon e_start="2360" e_stop="2462"/>
          <exon e_start="2560" e_stop="2789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTTTCCAATACCTATAGTGATGTATTTATATGTATAGGAGGAGGACAAGTTAATGGTCTACTTAGCACCTCTTATGGATGGACCTAACCATAGCATTTTCCAATGGCTTATGTGGTTCGAGTTGAAAGCAACGAGTTCAAGCAGAATTTACCCTTCTCTTATTGTATCCTCTTGAAATAGCTCAAATGAGTGTAATAACGTACAACATTTTCCTCTTTAGTTTTGGTCTTGTTAAGCTGCTGAATGTTAACTGATTTTTCCGCGTTTCCATAAGCTCATAGTGATTTAGAAGTATTTTAGTACATGTTGTGTATTTTCAGGAATGAAGCTTGATATGAGTTCGATTCACGACAATGTATAACTGTCAGTCTGTTATGTTTTAATTCTTCATATCTGTTGATAATGTGTGAAGTAATCCTCCTTTAGTGTTCCCTGTTTTTCCCCCCTCTATCTGGCATGTATCTCTGTCTATCTATTAGTTTTGACGGAGCAACAAAGGGCTGAATCTCAGTGGTCCGTGACAGTAAGGCCACTCTACAACTTACATTACCCCGTCTTGTCTATCCATTAGTTAAGGATTCAACTAAACTGACTTCCAGATTGTCGCGAGATCAGTACCTCTTTCTGCTTTACTTCTATGCATTTCATAACAGTAACTCCGGAATCGTGACAAATTTCTTCTGAATTCAGATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAGGTTGGTTTTATATATGCATTTTCGTTTATGTTTCGTGTTGCAAATGTAATGTTATGCACTCTATTTTCATTTCCGTCTTTGATTTTGTTCCGTCCAGCTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGT</genome_strand>
        <mrna_strand>TAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG.................................................................................................CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCCAAAACCTTATGGATCCTGCTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E291101" ref_strand="+" ref_description="SGN-E291101 [cLET-8-I18]">
      <seq>gaacaccacctaatattaacaaaatcccctggtttgaaaattttgagaggaaaggatttcgagacatttctactattcacgagctcccttatgatcactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaagggaagatgctggaccactgtttttcgaggtgacagaaaggactaaccgagggtttgcagggtggtggggtaaagaaagagatcaaggcaaagcaaactatactccgaacttcttacgttttgaatctccttgtgttcttcagaataatagagaaattgttgatgagagtggggagaagcattacttttcgggtctttttctttgtagaccatctggacaagggaaatcgatgcttattgttcggtttgggaatacaagaaaacgaaccgggatacttaaatttatcccaaactggttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2354" stop="3430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2654" g_stop="3130" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E291101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2654" e_stop="3130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGC</genome_strand>
        <mrna_strand>GAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E262511" ref_strand="+" ref_description="SGN-E262511 [cLEG-63-A13]">
      <seq>cactctattcttctcgaaaaccttatggatcctgctcatgtcccgatatcacacgataggacagattttacggcgaaaagggaagatgctggaccactgtttttcgaggtgacagaaaggactaaccgagggtttgcagggtggtggggtaaagaaagagatcaaggcaaagcaaactatactccgaacttcttacgttttgaatctccttgtgttcttcagaataatagagaaattgttgatgagagtggggagaagcattacttttcgggtctttttctttgtagaccatctggacaagggaaatcgatgcttattgttcggtttgggaatacaagaaaacgaaccgggatacttaaatttatcccaaactggttcttgcatcagaatgcaagcaaggttttcgagcaagatatggggttcctttcgtcccaaaacgaaatcctaatgaaagaaaaggttccaacaaagaaactatacttgaaccttaagtcgtcggatacatgggtagctgaatacaggaagtggatggacnaagtggggcacggaatgccttatcatttcggtcacagcaccattttcctgcctcaacaacctgctgtcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2449" stop="3655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2749" g_stop="3355" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E262511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2749" e_stop="3355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTG</genome_strand>
        <mrna_strand>CACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACNAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E729056" ref_strand="+" ref_description="SGN-E729056 [LA19DD03]">
      <seq>aggacagattttacggcgaaaagggaagatgcaggaccactgtttttcgaggtgacagaaaggactaaccgagggttggcagggtggtggggtaaataaagagatcaaggcaaagcaaactatactccgaacttattacgttgcgaatctccttgtgttcttcagaataatagagaaattgttgatgagagtggggagaagcattacttttcgggtctttttctttgtagaccatctggacaagggaaatcgatgcttattgttcggattgggaatacaagaaaacgaaccgggatacttaaatttatcccaaactggttcttgcatcagaatgcaagcaaggttttcgagcaagatatggggttcctttcgtcccaaaacgaaatcctaatgaaagaaaaggttccaacaaagaaactatacttgaaccttaagtcgtcggatacatgggtagctgaatacaggaagtggatggacaaagtggggcacggaatgccttatcatttcggtcacagcaccattttcctgcctcaacaacctgctgtcgttgagcacgcccctgctggtttcgttgccaattttttagctgctcacccagctaaaggaggaatccgtggaatatatgctccgaaccctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2506" stop="3745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2806" g_stop="3445" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E729056" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2806" e_stop="3445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCA</genome_strand>
        <mrna_strand>AGGACAGATTTTACGGCGAAAAGGGAAGATGCAGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTGGCAGGGTGGTGGGGTAAATAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTATTACGTTGCGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGATTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTTAGCTGCTCACCCAGCTAAAGGAGGAATCCGTGGAATATATGCTCCGAACCCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E706130" ref_strand="+" ref_description="SGN-E706130 [FA29AD06]">
      <seq>ccgataggactaaccgagggtttgcagggtggtggggtaaagaaagagatcaaggcaaagcaaactatactccgaacttcttacgttttgaatctccttgtgttcttcagaataatagagaaattgttgatgagagtggggagaagcattacttttcgggtctttttctttgtagaccatctggacaagggaaatcgatgcttattgttcggtttgggaatacaagaaaacgaaccgggatacttaaatttatcccaaactggttcttgcatcagaatgcaagcaaggttttcgagcaagatatggggttcctttcgtcccaaaacgaaatcctaatgaaagaaaaggttccaacaaagaaactatacttgaaccttaagtcgtcggatacatgggtagctgaatacaggaagtggatggacaaagtggggcacggaatgccttatcatttcggtcacagcaccattttcctgcctcaacaacctgctgtcgttgagcacgcccctgctggtttcgttgccaatttttcagctgctcagccagctaaaggaggaatcggtggaatatatgctccgaaccctgccaacagatacttcagacatgttgtacattgcagggattgcagcaacgttgttanagctttcgagacttggaaaaaggccctctctgttatagctctcgtgtcaactgcattcgcgattctagtgtctggaagacaatggaaggccttgcttttgctttcgaagtcgctatgtttacctggtgcatatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2561" stop="3935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2861" g_stop="3635" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E706130" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2861" e_stop="3635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTG</genome_strand>
        <mrna_strand>CCGATAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTANAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGAAGTCGCTATGTTTACCTGGTGCATATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E261281" ref_strand="+" ref_description="SGN-E261281 [cLEG-68-L24]">
      <seq>ttcggtttgggaatacaagaaaacgaaccgggatacttaaatttatcccaaactggttcttgcatcagaatgcaagcaaggttttcgagcaagatatggggttcctttcgtcccaaaacgaaatcctaatgaaagaaaaggttccaacaaagaaactatacttgaaccttaagtcgtcggatacatgggtagctgaatacaggaagtggatggacaaagtggggcacggaatgccttatcatttcggtcacagcaccattttcctgcctcaacaacctgctgtcgttgagcacgcccctgctggtttcgttgccaatttttcagctgctcagccagctaaaggaggaatcggtggaatatatgctccgaaccctgccaacagatacttcagacatgttgtacattgcagggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2768" stop="3781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3068" g_stop="3481" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E261281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3068" e_stop="3481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATT</genome_strand>
        <mrna_strand>TTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E295770" ref_strand="+" ref_description="SGN-E295770 [cLET-25-E6]">
      <seq>aaagtggggcacggaatgccttatcatttcggacacagcaccattttcctgcctcaacaacctgctgtcgttgagcacgcccctgctggtttcgttgccaatttttcagctgctcagccagctaaaggaggaatcggtggaatatatgctccaaaccctgccaacagatacttcagacatgttgtacattgcagggattgcagcaacgttgtataaagctttcgagacttggaaaaaggccctctctgttatagctctcgtgtgaactgcattcgcgattctagtgtctggaagacaatggaaggccttggttatgctttcgacgacgctatgtttaactggtgcatatgcttggtgaacagcccttggaatgaacacaaccaacttcataaggacttacagaagattgtaaaaagtatgtatataatagctatattcatattgatgttgtacatgtaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="2983" stop="4044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3283" g_stop="3744" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E295770" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3283" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGT-TAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTGTTCAACAGCCATTGCAATGAACACAACCAACTTCATAAGGACTCACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTTTTCATGTAAAATA</genome_strand>
        <mrna_strand>AAAGTGGGGCACGGAATGCCTTATCATTTCGGACACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCAAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTATAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTGAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGGTTATGCTTTCGACGACGCTATGTTTAACTGGTGCATATGCTTGGTGAACAGCCCTTGGAATGAACACAACCAACTTCATAAGGACTTACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTGTACATGTAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E352208" ref_strand="+" ref_description="SGN-E352208 [cTOS-13-F1]">
      <seq>ccttatcatttcggtcacagcaccattttcctgcctcaacaacctgctgtcgttgagcacgcccctgctggtttcgttgccaatttttcagctgctcagccagctaaaggaggaatcggtggaatatatgctccgaaccctgccaacagatacttcagacatgttgtacattgcagggattgcagcaacgttgttaaagctttcgagacttggaaaaaggccctctctgttatagctctcgtgtcaactgcattcgcgattctagtgtctggaagacaatggaaggccttgcttttgctttcgacgtcgctatgtttagctggtgcatatgcttgttcaacagccattgcaatgaacacaaccaacttcataaggactcacagaagattgtaaaaagtatgtatataatagctatattcatattgatgtttttcatgtaaaataggattcaggtttatgtgcttttcatacatattgctcccctcccgtcccatttatgtgacactgtttgatttgacacttaataagtgaatctcatattatctctgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="3001" stop="4150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3301" g_stop="3857" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E352208" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3301" e_stop="3857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTGTTCAACAGCCATTGCAATGAACACAACCAACTTCATAAGGACTCACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTTTTCATGTAAAATAGGATTCAGGTTTATGTGCTTTTCATACATATTGCT-CCCTCCGTCCCAATTTATGTGACACTGTTTGATTTGACACTTAATAAGTGAATCTCATATTATCTCTGCTATGCTTGA</genome_strand>
        <mrna_strand>CCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTGTTCAACAGCCATTGCAATGAACACAACCAACTTCATAAGGACTCACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTTTTCATGTAAAATAGGATTCAGGTTTATGTGCTTTTCATACATATTGCTCCCCTCCCGTCCCATTTATGTGACACTGTTTGATTTGACACTTAATAAGTGAATCTCATATTATCTCTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E224298" ref_strand="+" ref_description="SGN-E224298 [cLEL-19-F22]">
      <seq>tttttttttttttttttagcagagataatatgagattcacttattaagtgtcaaatcaaacagtgtcacataaattgggacggagggagcaatatgtatgaaaagcacataaacctgaatcctattttacatgaaaaacatcaatatgaatatagctattatatacatactttttacaatcttctgtgagtccttatgaagttggttgtgttcattgcaatggctgttgaacaagcatatgcaccagctaaacatagcgacgtcgaaagcaaaagcaaggccttccattgtcttccagacactagaatcgcgaatgcagttgacacgagagctataacagagagggcctttttccaagtctcgaaagctttaacaacgttgctgcaatccctgcaatgtacaacatgtctgaagtatctgttggcagggttcggagcatatattccaccgattcctcctttagctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8765" stop="3098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4779" g_stop="4766" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="3853" i_length="913">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3852" g_stop="3398" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="469" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E224298" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4779" e_stop="4766"/>
          <exon e_start="3852" e_stop="3398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATGTTATATTCTTCAAAAATCAATTCGAATATTATATTTTGCTTCTCTCGTTATAACGACCTAACTTTCATTAAAATTGAATTTTGATGACATATTTTACTTTTTTGTTATTCGTTATAATAACAATTACTATAATAACCTGATTTTATTTGAAATATGTTTTAAATGTTATACTCTTCAAAATCGATTCTGATGTTATACTTTGCTCCTCTCGTTATAATAGTCATTTATTCTTCAAAGTTGATTTTTGATGTTATATTTTATTTCACTATTAACACAAGTGACTTGTTATAGTGATACACTCTTTTTGAATTTTTTTTTATAATAGCCGTGCTTATAATATTTTGTAAGGAATATATTATGTATAAAAATAAAAATATTTAAAAATTTATAATGAAGTCATTAATATCATGTACAAAGTACGAATATAAAAAATAAAAAATGGTATTTTGCCATTTCTATATTCATACTCTTTCTTTTATTTTATTTTTTGTTTGTTTAATTGATTAACAAATACATTTCCTCTTCTTCTTGATACAAAAAAAAAAAAATTACTAAAAATATTTTTAGTGTTATATGTGTTAATTATTGGCTTACATATTTAGATACTTCTAACATACCAAAAATAATAGCAATCCCATGAGCTCTCATGGACAATGGAAAAGAGAACTTAGTTAAATCATGGCAAAACATTATTACAAGTGAACAAACGATCATGTCAACTTGCACACACCTCGACTTTTCATTGAGTACACTTATTATCTCCCAGCAACACATATACCGACTAACTCTTCCTATCAAAGCAATCATCCAGAACTTAGTGTCTAGACCAACTTGCACGCACCTCATCCAGGTAGATAGTTGCACCAACATCTCGCGGACATTCAATTTCCTTAAGAAGCATACGGAACGATCAAGCATAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTATCTGTTGGCAGGGTTCGGAGCATATATTCCACCGATTCCTCCTTTAGCTGGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTATCTGTTGGCAGGGTTCGGAGCATATATTCCACCGATTCCTCCTTTAGCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E223906" ref_strand="+" ref_description="SGN-E223906 [cLEL-19-F22]">
      <seq>tttttttttttttttttagcagagataatatgagattcacttattaagtgtcaaatcaaacagtgtcacataaattgggacggagggagcaatatgtatgaaaagcacataaacctgaatcctattttacatgaaaaacatcaatatgaatatagctattatatacatactttttacaatcttctgtgagtccttatgaagttggttgtgttcattgcaatggctgttgaacaagcatatgcaccagctaaacatagcgacgtcgaaagcaaaagcaaggccttccattgtcttccagacactagaatcgcgaatgcagttgacacgagagctataacagagagggcctttttccaagtctcgaaagctttaacaacgttgctgcaatccctgcaatgtacaacatgtctgaagtatctgttggcagggttcggagcatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8765" stop="3124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4779" g_stop="4766" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="3853" i_length="913">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3852" g_stop="3424" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="443" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E223906" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4779" e_stop="4766"/>
          <exon e_start="3852" e_stop="3424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATGTTATATTCTTCAAAAATCAATTCGAATATTATATTTTGCTTCTCTCGTTATAACGACCTAACTTTCATTAAAATTGAATTTTGATGACATATTTTACTTTTTTGTTATTCGTTATAATAACAATTACTATAATAACCTGATTTTATTTGAAATATGTTTTAAATGTTATACTCTTCAAAATCGATTCTGATGTTATACTTTGCTCCTCTCGTTATAATAGTCATTTATTCTTCAAAGTTGATTTTTGATGTTATATTTTATTTCACTATTAACACAAGTGACTTGTTATAGTGATACACTCTTTTTGAATTTTTTTTTATAATAGCCGTGCTTATAATATTTTGTAAGGAATATATTATGTATAAAAATAAAAATATTTAAAAATTTATAATGAAGTCATTAATATCATGTACAAAGTACGAATATAAAAAATAAAAAATGGTATTTTGCCATTTCTATATTCATACTCTTTCTTTTATTTTATTTTTTGTTTGTTTAATTGATTAACAAATACATTTCCTCTTCTTCTTGATACAAAAAAAAAAAAATTACTAAAAATATTTTTAGTGTTATATGTGTTAATTATTGGCTTACATATTTAGATACTTCTAACATACCAAAAATAATAGCAATCCCATGAGCTCTCATGGACAATGGAAAAGAGAACTTAGTTAAATCATGGCAAAACATTATTACAAGTGAACAAACGATCATGTCAACTTGCACACACCTCGACTTTTCATTGAGTACACTTATTATCTCCCAGCAACACATATACCGACTAACTCTTCCTATCAAAGCAATCATCCAGAACTTAGTGTCTAGACCAACTTGCACGCACCTCATCCAGGTAGATAGTTGCACCAACATCTCGCGGACATTCAATTTCCTTAAGAAGCATACGGAACGATCAAGCATAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTATCTGTTGGCAGGGTTCGGAGCATATAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTATCTGTTGGCAGGGTTCGGAGCATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E221360" ref_strand="+" ref_description="SGN-E221360 [cLEL-22-F24]">
      <seq>tttttttttttttttttagcagagataatatgagattcacttattaagtgtcaaatcaaacagtgtcacataaattgggacggagggagcaatatgtatgaaaagcacataaacctgaatcctattttacatgaaaaacatcaatatgaatatagctattatatacatactttttacaatcttctgtgagtccttatgaagttggttgtgttcattgcaatggctgttgaacaagcatatgcaccagctaaacatagcgacgtcgaaagcaaaagcaaggccttccattgtcttccagacactagaatcgcgaatgcagttgacacgagagctataacagagagggcctttttccaagtcttgaaagctttaacaacgttgctgcaatccctgcaatgtacaacatgtctgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8765" stop="3151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4779" g_stop="4766" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="3853" i_length="913">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3852" g_stop="3451" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="416" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E221360" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4779" e_stop="4766"/>
          <exon e_start="3852" e_stop="3451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATGTTATATTCTTCAAAAATCAATTCGAATATTATATTTTGCTTCTCTCGTTATAACGACCTAACTTTCATTAAAATTGAATTTTGATGACATATTTTACTTTTTTGTTATTCGTTATAATAACAATTACTATAATAACCTGATTTTATTTGAAATATGTTTTAAATGTTATACTCTTCAAAATCGATTCTGATGTTATACTTTGCTCCTCTCGTTATAATAGTCATTTATTCTTCAAAGTTGATTTTTGATGTTATATTTTATTTCACTATTAACACAAGTGACTTGTTATAGTGATACACTCTTTTTGAATTTTTTTTTATAATAGCCGTGCTTATAATATTTTGTAAGGAATATATTATGTATAAAAATAAAAATATTTAAAAATTTATAATGAAGTCATTAATATCATGTACAAAGTACGAATATAAAAAATAAAAAATGGTATTTTGCCATTTCTATATTCATACTCTTTCTTTTATTTTATTTTTTGTTTGTTTAATTGATTAACAAATACATTTCCTCTTCTTCTTGATACAAAAAAAAAAAAATTACTAAAAATATTTTTAGTGTTATATGTGTTAATTATTGGCTTACATATTTAGATACTTCTAACATACCAAAAATAATAGCAATCCCATGAGCTCTCATGGACAATGGAAAAGAGAACTTAGTTAAATCATGGCAAAACATTATTACAAGTGAACAAACGATCATGTCAACTTGCACACACCTCGACTTTTCATTGAGTACACTTATTATCTCCCAGCAACACATATACCGACTAACTCTTCCTATCAAAGCAATCATCCAGAACTTAGTGTCTAGACCAACTTGCACGCACCTCATCCAGGTAGATAGTTGCACCAACATCTCGCGGACATTCAATTTCCTTAAGAAGCATACGGAACGATCAAGCATAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTTGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E220934" ref_strand="+" ref_description="SGN-E220934 [cLEL-22-D8]">
      <seq>tttttttttttttttttagcagagataatatgagattcacttattaagtgtcaaatcaaacagtgtcacataaattgggacggagggagcaatatgtatgaaaagcacataaacctgaatcctattttacatgaaaaacatcaatatgaatatagctattatatacatactttttacaatcttctgtgagtccttatgaagttggttgtgttcattgcaatggctgttgaacaagcatatgcaccagctaaacatagcgacgtcgaaagcaaaagcaaggccttccattgtcttccagacactagaatcgcgaatgcagttgacacgagagctataacagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8765" stop="3223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4779" g_stop="4766" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4765" i_stop="3853" i_length="913">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3852" g_stop="3523" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="344" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E220934" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4779" e_stop="4766"/>
          <exon e_start="3852" e_stop="3523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATGTTATATTCTTCAAAAATCAATTCGAATATTATATTTTGCTTCTCTCGTTATAACGACCTAACTTTCATTAAAATTGAATTTTGATGACATATTTTACTTTTTTGTTATTCGTTATAATAACAATTACTATAATAACCTGATTTTATTTGAAATATGTTTTAAATGTTATACTCTTCAAAATCGATTCTGATGTTATACTTTGCTCCTCTCGTTATAATAGTCATTTATTCTTCAAAGTTGATTTTTGATGTTATATTTTATTTCACTATTAACACAAGTGACTTGTTATAGTGATACACTCTTTTTGAATTTTTTTTTATAATAGCCGTGCTTATAATATTTTGTAAGGAATATATTATGTATAAAAATAAAAATATTTAAAAATTTATAATGAAGTCATTAATATCATGTACAAAGTACGAATATAAAAAATAAAAAATGGTATTTTGCCATTTCTATATTCATACTCTTTCTTTTATTTTATTTTTTGTTTGTTTAATTGATTAACAAATACATTTCCTCTTCTTCTTGATACAAAAAAAAAAAAATTACTAAAAATATTTTTAGTGTTATATGTGTTAATTATTGGCTTACATATTTAGATACTTCTAACATACCAAAAATAATAGCAATCCCATGAGCTCTCATGGACAATGGAAAAGAGAACTTAGTTAAATCATGGCAAAACATTATTACAAGTGAACAAACGATCATGTCAACTTGCACACACCTCGACTTTTCATTGAGTACACTTATTATCTCCCAGCAACACATATACCGACTAACTCTTCCTATCAAAGCAATCATCCAGAACTTAGTGTCTAGACCAACTTGCACGCACCTCATCCAGGTAGATAGTTGCACCAACATCTCGCGGACATTCAATTTCCTTAAGAAGCATACGGAACGATCAAGCATAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E336021" ref_strand="+" ref_description="SGN-E336021 [cTOE-6-J16]">
      <seq>tttcttcctccctatctcttcctctttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4735" stop="6894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5035" g_stop="5107" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="402" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6594" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="451" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E336021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5035" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGAT</genome_strand>
        <mrna_strand>TTTCTTCCTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E724809" ref_strand="+" ref_description="SGN-E724809 [FC25AH07]">
      <seq>attggcggccaaatcggccgaattgctccctatctcttcctctttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacatattctggtcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4739" stop="7904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5042" g_stop="5107" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="91" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="140" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="420" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="556" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7607" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="783" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E724809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5042" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTG</genome_strand>
        <mrna_strand>CTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E718083" ref_strand="+" ref_description="SGN-E718083 [FC03CE09]">
      <seq>tatctcttcctctttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggaactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4747" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5047" g_stop="5107" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="110" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="390" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="526" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7554" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="701" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E718083" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5047" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGG-ACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAAT</genome_strand>
        <mrna_strand>TATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGAACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E718153" ref_strand="+" ref_description="SGN-E718153 [FC03DD11]">
      <seq>gggcgattggcggccaatcggccgaattgatctcttcctctttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4748" stop="7880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5048" g_stop="5107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="89" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="138" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="418" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="554" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7580" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="754" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E718153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5048" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTAC</genome_strand>
        <mrna_strand>ATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E720162" ref_strand="+" ref_description="SGN-E720162 [FC10AA05]">
      <seq>aatcggccgaattgatctcgtcctcttttccccgagaactcttcagctccactattcttcaacgaaatcaaatgattatcccagagaagaacaggagagagatctccaggtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttgggcgtcccatgggtggacctccaggcaataggccccgggaaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaaaaggtccacctggtgaatttggaggcaagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtgaagccggaggttttggtggtgcaccccctacttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4748" stop="7872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5048" g_stop="5107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="74" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="403" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="539" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7572" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="731" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E720162" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5048" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAA</genome_strand>
        <mrna_strand>ATCTCGTCCTCTTTTCCCCGAGAACTCTTCAGCTCCACTATTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAGAACAGGAGAGAGATCTCCAGGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGGCGTCCCATGGGTGGACCTCCAGGCAATAGGCCCCG.............................................................................................GGAACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAAAGGTCCACCTGGTGAATTTGGAGGCAAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGAAGCCGGAGGTTTTGGTGGTGCACCCCCTACTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E715636" ref_strand="+" ref_description="SGN-E715636 [FB14DD08]">
      <seq>cttcctctttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacatattctggtcattgttttatggtccaaacaaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4752" stop="7930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5052" g_stop="5107" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="105" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="385" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="521" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7630" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="771" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E715636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5052" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACT</genome_strand>
        <mrna_strand>CTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E729001" ref_strand="+" ref_description="SGN-E729001 [LA19CF06]">
      <seq>cttttntgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggttgctattggtttatccaaattttgatcattaaatgttggactcaacttgactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4758" stop="7812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5056" g_stop="5107" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="100" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="380" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="516" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7512" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="648" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E729001" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5056" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATT</genome_strand>
        <mrna_strand>CT-TTTNTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTGCTATTGGTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E716514" ref_strand="+" ref_description="SGN-E716514 [FB17BA08]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaaaaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="100393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7575" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="709" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7576" i_stop="9405" i_length="1830">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9406" g_stop="9427" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="731" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E716514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7575"/>
          <exon e_start="9406" e_stop="9427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACTTGCAATTTGTTTCATTGATAGATCAGTTATTGATGTTTTCGTCTGGATAGACTATATGCTTTAGGATTGATATAATTTTCCTCGAATTTCATGTGAACGTGGGATATTTTGTGCCTCGAATTTCACTGGAACTCAGAAATAAGGTGTCAGATGCAATGTGGATTGACTTTGTAAGTATTTAAGTACTCATCTGTTCCCCACCTTGGCAGAGTGTATCGACATAACCACACCAAATAAATGTAGCTTTAATGCTAAATTTAATCGGAGATGCCAATAAATTTATTGCTAATTTCATATTTTTTTATCGTTATCGTGAGCAAGAAGATTCTTTAATATATATCAAAGTGATGAAAAGACCAATTAGTTCAAATAAGATATGTATCTTCTTTAAAACTTGTCACACATTCTGAAAGAAATTAATTGAATTTATTTTTATATAACCTAGCTTGAGTTTGATTAAGCATAGTATCTCAAAAATGAGTGTTTTAGGTTTAACATTCTCTATGTACTCTTGATCGAGTTTGTTACACGTGACTTACCTGGTGCAATTTAGCAGATTATTACACTAGACTTAAATCTATCTTTTTCGCGCTCAAAGAATAGTGATTGCGGAATAAAAAAAGATAATTTTGATCGAATTTGTTACATGTGACTTACCTAGTGCAATTTAGCCGACTATTACACTAGACTTAAAATCTTTTTTTTCGTGTTCAGAATAGCGATTGCGGAATAAAAAAAAATAATGGTAATTTATATTACAAACTTATCATAACATGGCTAGCAAGCTTCTTATAAAGGGGTAGATTATTATTGCTATTTTAAAAAAAAAAAAAAAGTATGGAACAAATGATACTATAGAACATCCAAGACATTCATAAAACCAAAAATAAAATATAAAAAAAATGTTCACAAGTAATTAATTAATTTAAAAGAATTCATCTGTTTTCCACTCTTGTCAGAAAATAATTAAATTCATTTACTATACCTAACCAAACTAAATAAATGCACCCATAAATATTCAACCTGTACTTTCCTCCTCTTCTTTTTAATTTTTATTATATTCCTTCATTTTACTGGGCAATATACTGAAAACACAAAGAAAATAACTCTGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAGGTAATATTTCTAGTAATTATCTATTTAATTTTTATGCATTACGCTTGTATAAAAGAAATTTGGATTAACTACTTTGCATGCAATTACGTAACTAGTAGTGTATATTCTCACTTCAATTTACACTCTACTGTAGTTAATTTTATCGATTTGATGTGAACACTGAATAAAGTTTAATTCAAATAAATTTAATAAAGTTCTTAAATTCTTCCTCAAATAATACTTCTGATCTTAATTTACATGACATCATCTGATCAAGCATGAAGTTTTATAAATAAAATAAATACTTAATTGTGATCTAGAAATATTGTATTATTATAAATTATCTCATTTAAGCAATTAAGTAGTTTTCAATATAAATAAGTGACATTAATCACTTCTAAGAAAATAAAAAGAAAAAAAAAAC</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAANAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E322002" ref_strand="+" ref_description="SGN-E322002 [cTOB-29-J7]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaacactctgctatgcaggcaatttcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="7856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7556" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="689" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E322002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCT</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTT-AAACACTCTGCTATGCAGGCAATTTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E323013" ref_strand="+" ref_description="SGN-E323013 [cTOB-30-F12]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctccctagggttctatggtttatccaaattttgatcattaaatgttggactcaacttgactattattctctccttaaaacactctgctatgcaggcaatttcaatctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="7857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7543" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="676" r_length="162" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E323013" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCT-CCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAG</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCCTAGGGTTCTA-TGGTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCC-TTAAAACACTCTGCTATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E320415" ref_strand="+" ref_description="SGN-E320415 [cTOB-22-B7]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccgagagggagtatgctttgctaggaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctgnatttggtcgtggagccggaggttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="7728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7428" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="562" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E320415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGT</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCGAG.................................................................................................AGGGAGTATGCTTTGCTAGGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGNATTTGGTCGTGGAGCCGGAGGTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E271570" ref_strand="+" ref_description="SGN-E271570 [cLEM-23-H1]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="7726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7426" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="560" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E271570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTG</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E293881" ref_strand="+" ref_description="SGN-E293881 [cLET-13-G13]">
      <seq>tttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4759" stop="6924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5059" g_stop="5107" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="98" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="378" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6624" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="457" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E293881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5059" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCT</genome_strand>
        <mrna_strand>TTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E325632" ref_strand="+" ref_description="SGN-E325632 [cTOC-15-P8]">
      <seq>ttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtgggtggaagacctggatttggtcgtggagcccggagttttggtggtgcaccccctagttcaagctcctagggttctattggtttatccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4760" stop="7778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5060" g_stop="5107" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="97" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="377" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="513" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7478" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="612" r_length="99" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E325632" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5060" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGT-GGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATT</genome_strand>
        <mrna_strand>TTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGGTGGAAGACCTGGATTTGGTCGTGGAGCCCGGAGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGGTTCTATTGGTTTATCCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E292675" ref_strand="+" ref_description="SGN-E292675 [cLET-11-I20]">
      <seq>ttttgccgagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4760" stop="6755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5060" g_stop="5107" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="97" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="377" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6553" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="385" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E292675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5060" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCAC</genome_strand>
        <mrna_strand>TTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E283662" ref_strand="+" ref_description="SGN-E283662 [cLES-1-B10]">
      <seq>gagaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4767" stop="6936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5067" g_stop="5107" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="90" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="370" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6636" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="461" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E283662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5067" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGA</genome_strand>
        <mrna_strand>GAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E340094" ref_strand="+" ref_description="SGN-E340094 [cTOF-3-B14]">
      <seq>agaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4768" stop="6659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5068" g_stop="5107" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="88" r_length="48" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6359" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="275" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E340094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5068" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCT</genome_strand>
        <mrna_strand>AGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAG-AAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E715623" ref_strand="+" ref_description="SGN-E715623 [FB14DC04]">
      <seq>gaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4769" stop="7885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5069" g_stop="5107" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="88" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="368" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="504" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7585" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="709" r_length="205" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E715623" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5069" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAA</genome_strand>
        <mrna_strand>GAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E207396" ref_strand="+" ref_description="SGN-E207396 [cLEC-36-K22]">
      <seq>gaactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4769" stop="6648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5069" g_stop="5107" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="88" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6348" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="264" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E207396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5069" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTC</genome_strand>
        <mrna_strand>GAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E345047" ref_strand="+" ref_description="SGN-E345047 [cTOF-22-H18]">
      <seq>aactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggattctgtcgtggagccggacgttttggtggtgccccccctagttcaagctnctaggtttctattgttttatccaaattttgatcattacatgttggactcaacttgactatgattctctcctttaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4770" stop="7887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5070" g_stop="5107" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="87" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="367" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="503" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7590" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="712" r_length="209" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E345047" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5070" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTC</genome_strand>
        <mrna_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTCTGTCGTGGAGCCGGACGTTTTGGTGGTGCCCCCCCTAGTTCAAGCTNCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTACATGTTGGACTCAACTTGACTATGATTCTCTCCTTT-AAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E345318" ref_strand="+" ref_description="SGN-E345318 [cTOF-13-N2]">
      <seq>aactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaaatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4770" stop="7857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5070" g_stop="5107" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="87" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="367" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="503" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7543" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="666" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="691"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E345318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5070" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAG</genome_strand>
        <mrna_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E282851" ref_strand="+" ref_description="SGN-E282851 [cLER-15-F5]">
      <seq>aactcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4770" stop="6976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5070" g_stop="5107" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="87" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="367" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6676" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="498" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E282851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5070" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCAT</genome_strand>
        <mrna_strand>AACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E309524" ref_strand="+" ref_description="SGN-E309524 [cTOA-3-A3]">
      <seq>actcttcagcttcacttttcttcaacgaaatcaaatgatggtgccatagaaaagcaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4771" stop="6894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5071" g_stop="5107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="86" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="366" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6594" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="415" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E309524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5071" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGAT</genome_strand>
        <mrna_strand>ACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCCATAGAAAAGCAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E347892" ref_strand="+" ref_description="SGN-E347892 [cTOF-31-E20]">
      <seq>ctcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaaaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacatntgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggaccggaggttttggtggtcacccccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4772" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5072" g_stop="5107" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="84" r_length="48" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="365" r_length="281" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="501" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7592" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="714" r_length="213" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="724"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E347892" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5072" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACAT-TGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGT--GCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCAC</genome_strand>
        <mrna_strand>CTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAA-AGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATNTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGA-CCGGAGGTTTTGGTGGTCACCCCCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E731799" ref_strand="+" ref_description="SGN-E731799 [LA28AH07]">
      <seq>ctcttcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4772" stop="7887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5072" g_stop="5107" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="85" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="365" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="501" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7589" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="710" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E731799" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5072" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATT</genome_strand>
        <mrna_strand>CTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E294130" ref_strand="+" ref_description="SGN-E294130 [cLET-13-H15]">
      <seq>tcagcttcacttttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4776" stop="7818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5076" g_stop="5107" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="81" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="361" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="497" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7518" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="635" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E294130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5076" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTCACTTTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTC</genome_strand>
        <mrna_strand>TCAGCTTCACTTTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E311439" ref_strand="+" ref_description="SGN-E311439 [cLEZ-18-C20]">
      <seq>tttcttcaacgaaatcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="4787" stop="7714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5087" g_stop="5107" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="70" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="350" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="486" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7381" g_stop="7414" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="520" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E311439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5087" e_stop="5107"/>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAACGAAATCAAATGGTATGTTTCTGTTTATCTCTAACTATACCTTAAATTTATCGTATTATATTCGTTAATGGTGTTTTAAAGGTTAGTTAATTGGATAGTAATGTGTGTTTTGCTTTGAATTTGTTAGATTGATTCTTGTGATTTTTGTGTTAATATGTGGAGTAATAGCTCAATTGTGATGAAATAGTAGTGCTAGTTTGTGTTTAAAGTAGTAAAAATCTGTTCTTTTTGTAAATCTGAATGACTAATTACCAGAAAGATAATTTGATGAGGTGAGTTGAGCTGTGAGGGCTCAGGTTCTAATCCGGGTGTGTTAAAAAGATTGATTTTTTCCTATCTGTTTGAGATTTGGGGGACAGTGATATTTATGGACTCCATGATTGTAAAATAGAAATTCAATATAGTGGGTTGGGTTGAGCTGTGAGGTCTCAATGTTCATGCTTTGAGTGACTACTGCCCGTTGATGGCATGGTTGTAAAAAGAAATTCAATGTAGTGGGCTGGACCGCGAGGTCTCAGGTTCAAATCCCTGGTATGGTAAAAAGATTTTTTTTTTCCTGTTTTTTTGAGCTTTCTGGTTACCTTTGTACACCATGATTGTATTAGGAAATTCAATATAGTGGGTTGAGCTGCGAGGCCTCAGATTTAAATGCTGGGTGTGTTAAAAGGTTGATTTCCCCATCTGTTCAAGCTTTGGTGGACAGTGTTACCTATTGACACCATGGTTATGGTTTTAAAAAAGAAATTTAATGTTGTGACCGGTCAAATCCCGGGTGTGGTAAAAAGATTGATATTTTTACATCTGTTCAAGCTTTAGGGGAGCTTGGGGGCCAATGTTACTCGTGGATGCCATTGTTGTAAAAAGAAATTCAAATAAATTAATTAATTCTCTCGGATATTCTTATGTGTTTTTTCATCAAAATGTATTTCAGATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAG</genome_strand>
        <mrna_strand>TTTCTTCAACGAAATCAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E577865" ref_strand="-" ref_description="SGN-E577865 [LE08AF07]">
      <seq>tcaaatgattatcccagagaaaaacaggagagagatctccaagtacctcttccaagagggagtatgctttgctaagaaggactacaacttggcgaaacatcctaacattgatgtgccgaacctacaagtgattaagctgatgcagagctttaagtcaaaggagtatgtgcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="5726" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6027" g_stop="6075" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="56" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6173" g_stop="6452" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="336" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="472" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7381" g_stop="7594" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="686" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E577865" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6027" e_stop="6075"/>
          <exon e_start="6173" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAGGTAATTATTTCTTTCTGTTTTCTTATGTGTTGGATGCTTTAGGATATCTTTGAGATGATGTTGGTATTTATTGCGAATTTACGTTTATGCATTGTAGAGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</genome_strand>
        <mrna_strand>ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG.................................................................................................AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E228525" ref_strand="+" ref_description="SGN-E228525 [cLED-3-L10]">
      <seq>gcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctccttttaaaacactctgctttgcaagcaatttcaatctatcttttttatctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="5985" stop="7873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6285" g_stop="6452" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="304" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7573" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="499" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E228525" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6285" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCC-TTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATC-TTTTTATCTTTAAT</genome_strand>
        <mrna_strand>GCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTTAAAACACTCTGCTTTGCAAGCAATTTCAATCTATCTTTTTTATCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E236662" ref_strand="+" ref_description="SGN-E236662 [cLED-13-N24]">
      <seq>gcgcgagacctttgcttggatgcactactactggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="5985" stop="7810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6285" g_stop="6452" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="304" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7510" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="434" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E236662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6285" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTA</genome_strand>
        <mrna_strand>GCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E295637" ref_strand="+" ref_description="SGN-E295637 [cLET-25-C10]">
      <seq>tggtatcttaccaatgatggcattgagttcctcaggacttacctcaatcttccttctgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattggtttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6016" stop="7866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6316" g_stop="6452" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="273" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7566" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="459" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E295637" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6316" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTAT</genome_strand>
        <mrna_strand>TGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGGTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E323542" ref_strand="-" ref_description="SGN-E323542 [cTOC-2-E21]">
      <seq>tgaaattgtccctgccacattgaagaagtctgctaagccccttggtcgtcccatgggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaaaaaaaaaaaaaaaaaatcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6072" stop="100399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6372" g_stop="6452" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="217" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7574" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="411" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7575" i_stop="8811" i_length="1237">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8812" g_stop="8844" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="444" r_length="33" r_score="0.697"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E323542" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323542" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6372" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7574"/>
          <exon e_start="8812" e_stop="8844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACTTGCAATTTGTTTCATTGATAGATCAGTTATTGATGTTTTCGTCTGGATAGACTATATGCTTTAGGATTGATATAATTTTCCTCGAATTTCATGTGAACGTGGGATATTTTGTGCCTCGAATTTCACTGGAACTCAGAAATAAGGTGTCAGATGCAATGTGGATTGACTTTGTAAGTATTTAAGTACTCATCTGTTCCCCACCTTGGCAGAGTGTATCGACATAACCACACCAAATAAATGTAGCTTTAATGCTAAATTTAATCGGAGATGCCAATAAATTTATTGCTAATTTCATATTTTTTTATCGTTATCGTGAGCAAGAAGATTCTTTAATATATATCAAAGTGATGAAAAGACCAATTAGTTCAAATAAGATATGTATCTTCTTTAAAACTTGTCACACATTCTGAAAGAAATTAATTGAATTTATTTTTATATAACCTAGCTTGAGTTTGATTAAGCATAGTATCTCAAAAATGAGTGTTTTAGGTTTAACATTCTCTATGTACTCTTGATCGAGTTTGTTACACGTGACTTACCTGGTGCAATTTAGCAGATTATTACACTAGACTTAAATCTATCTTTTTCGCGCTCAAAGAATAGTGATTGCGGAATAAAAAAAGATAATTTTGATCGAATTTGTTACATGTGACTTACCTAGTGCAATTTAGCCGACTATTACACTAGACTTAAAATCTTTTTTTTCGTGTTCAGAATAGCGATTGCGGAATAAAAAAAAATAATGGTAATTTATATTACAAACTTATCATAACATGGCTAGCAAGCTTCTTATAAAGGGGTAGATTATTATTGCTATTTTAAAAAAAAAAAAAAAGTATGGAACAAATGATACTATAGAACATCCAAGACATTCATAAAACCAAAAATAAAATATAAAAAAAATGTTCACAAGTAATTAATTAATTTAAAAGAATTCATCTGTTTTCCACTCTTGTCAGAAAATAATTAAATTCATTTACTATACCTAACCAAACTAAATAAATGCACCCATAAATATTCAACCTGTACTTTCCTCCTCTTCTTTTTAATTTTTATTATATTCCTTCATTTTACTGGGCAATATACTGAAAACACAAAGAAAATAACTCTGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTC</genome_strand>
        <mrna_strand>TGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAATCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E541405" ref_strand="+" ref_description="SGN-E541405 [TUS-62-C21]">
      <seq>gggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6126" stop="7876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6426" g_stop="6452" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="163" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7580" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="363" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E541405" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6426" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTAC</genome_strand>
        <mrna_strand>GGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E541402" ref_strand="-" ref_description="SGN-E541402 [TUS-62-C21]">
      <seq>gggtggacctccaggcgataggccccgtggaccaccaaggtttgagggtgataggccaaggtttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6126" stop="7876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6426" g_stop="6452" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6546" g_stop="6681" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="163" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7381" g_stop="7579" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="362" r_length="199" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E541402" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541402" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6426" e_stop="6452"/>
          <exon e_start="6546" e_stop="6681"/>
          <exon e_start="7381" e_stop="7579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGACCTCCAGGCGATAGGCCCCGGTAAATTTCACAACCATATGTGTAGCTTCATTGAAATAAAAGTTTCTCGAGTGATTGAGTTGATTTTGATGCATCTCCTTTGTATTTTTGCAGTGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTA</genome_strand>
        <mrna_strand>GGGTGGACCTCCAGGCGATAGGCCCCG.............................................................................................TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E291196" ref_strand="+" ref_description="SGN-E291196 [cLET-2-C17]">
      <seq>ttggtgatagggatggttatcgtgctggtccaagaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacatattctggtcattgttttatggtccaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6281" stop="7928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6581" g_stop="6681" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7381" g_stop="7631" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="352" r_length="251" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E291196" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6581" e_stop="6681"/>
          <exon e_start="7381" e_stop="7631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACTT</genome_strand>
        <mrna_strand>TTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E299248" ref_strand="+" ref_description="SGN-E299248 [cLET-43-E14]">
      <seq>gatggttatcgtgctggtccaagtaggtccacctggtgaatttggaggcgagaagggtggagctccagctgactaccaccccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6292" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6592" g_stop="6681" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7381" g_stop="7594" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="305" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="316"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E299248" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6592" e_stop="6681"/>
          <exon e_start="7381" e_stop="7594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTATCGTGCTGGTCCAAG-AGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</genome_strand>
        <mrna_strand>GATGGTTATCGTGCTGGTCCAAGTAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCACCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E355360" ref_strand="+" ref_description="SGN-E355360 [cTOS-18-P6]">
      <seq>tgaatttggaggcgagaagggtggagctccagctgactaccagcccgcattcaggggtggtggtggaagacctggatttggtcgtggagccggaggttttggtggtgcaccccctagttcaagctcctaggtttctattgttttatccaaattttgatcattaaatgttggactcaacttgactattattctctcctttaaaacactctgctatgcaggcaatttcaatctatctttttatctttaatgaactactataagattcacataaaaaaaaaaaaagaaaaactactaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="6327" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6627" g_stop="6681" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7381" g_stop="7594" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="269" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="288"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E355360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6627" e_stop="6681"/>
          <exon e_start="7381" e_stop="7594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGGGTAAGTCAATTCGTATCCTTTACATTATTGATTCAAATTTTCAGAGCATGTTTTGTATTGAGGAATGAAGGCAATGATATAGCAATCGTTTTTTGTTTAGTTTAAATTTCGTATTATTACATTAGCAAAGCCGATTTTAGTTGCTCTCAGGTCATCAACCAAGATTTCTTTCATTTTTGTCTGTTTAACTAAAGTCACTTTCCTTTATTTTAGAGGAATTTAAATGGGAAAAACATACAATGGTAAAAGATTCTTGCCATACTCTAGTGCCAATGTGCCTTTTTACTTGCTGAATTGTAAAATCTTCGTGTTAATATCTTGTGTTTCCTGTTTGATGCATTTAGTACTTGCCAACGGCACAAGGATTCACCTGGATATTGAACCGTAGTAGTTCTCTTCAATGCTGAACTTCCCATATTGCCTATGTCATTTTGGTTTGTCCCCCTCCATCTTTTCTTACAGAAGCCGGCAAGTGCATTTCAGGGTGCTGATCTTTAAGTACCTTTGCTATAATGTTGTCTGCCTCGTTTCTTATTTTGCTTTTGACCAATATGTGATTTGCATGGCAATTGAATGGTGGAAATGTTCTCTATTCAAAAGAATTCGTTAAGCGGACACCAATCTTGTGGATGCTCTCTTATTTAATGTAAACTAAGCTGAACTATGAACATTATCTAAATTATAATTTTGTACTTGTAGGGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</genome_strand>
        <mrna_strand>TGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E313694" ref_strand="+" ref_description="SGN-E313694 [cTOA-17-A3]">
      <seq>ctctgtgtaacaccaaaaatatatatggagaaactcaaactacaaatatattcaatccaaacactatgtttacgcaaaaaaaaatataaattttcgttacttattttcttgtgttcgataatatttttttcgaaaacatcatgttcaactctttcatttaatttttatggattatcttgtccctcaactgaattaatggtgaaaaatacagccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8437" stop="9251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8737" g_stop="8951" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E313694" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8737" e_stop="8951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAG</genome_strand>
        <mrna_strand>CTCTGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAACTGAATTAATGGTGAAAAATACAGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E687722" ref_strand="+" ref_description="SGN-E687722 [T3_tus_79_K02]">
      <seq>ccttttacaccaaaaatatatatggagaaactcaaactacaattttattcaatccaaacactatgtttacgcaaaaaaaaatataaattttcgttacttattttcttgtgttcgataatatttttttcaaaaacatcatgttcaactctttcatttaatttttatggattatcttgtccctcagctgaattaatggtgaaaaatacagtaagatcagcttcttctatggatccaactatacctggaaaattgcttcgtcttctttttcacaattgctttgttgagggttgtgatgcatctatattattaaaaggaaatggaacagaaagaagtgatccagcaaacaaatcacttggaggattttcagtaatagaaaatgccaaaagggttttggaaatattttgtccttttacggtttcttgtgctgatattgttgctttggcggctagagatgctgttgaatttgcaggagggccaaatgttcaaattccaacgggaagaaaagatggaaaaattattttgataacaaaatgtgaaaccaaacataggggacacaagtttcacaaatgaatcaaatgattaaaatttttactataaagggactttctttaaatgatcttgttatcctatcaggtgcacacacaataggatcagcactttgcaatgcatttagtgatcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8439" stop="11987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8740" g_stop="9024" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9025" i_stop="9688" i_length="664">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9868" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="465" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9869" i_stop="10433" i_length="565">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10434" g_stop="10599" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="633" r_length="168" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10600" i_stop="11639" i_length="1040">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11640" g_stop="11687" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="681" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E687722" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8740" e_stop="9024"/>
          <exon e_start="9689" e_stop="9868"/>
          <exon e_start="10434" e_stop="10599"/>
          <exon e_start="11640" e_stop="11687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAGGTAATATTTCTAGTAATTATCTATTTAATTTTTATGCATTACGCTTGTATAAAAGAAATTTGGATTAACTACTTTGCATGCAATTACGTAACTAGTAGTGTATATTCTCACTTCAATTTACACTCTACTGTAGTTAATTTTATCGATTTGATGTGAACACTGAATAAAGTTTAATTCAAATAAATTTAATAAAGTTCTTAAATTCTTCCTCAAATAATACTTCTGATCTTAATTTACATGACATCATCTGATCAAGCATGAAGTTTTATAAATAAAATAAATACTTAATTGTGATCTAGAAATATTGTATTATTATAAATTATCTCATTTAAGCAATTAAGTAGTTTTCAATATAAATAAGTGACATTAATCACTTCTAAGAAAATAAAAAGAAAAAAAAAACATGTCATAAATTAAGGCAAATGACGTAATATTTTATCATATGAAAGATTGATTAATTTTTTTCTGAATAATAGGCCCTCCTGTCTATCCTTGTCCATTTAAGTACCAAACTATATTTTTGTGTTGATTAGGATTAAAAACTCGTAACTTGCATCTAACTTACACATCTGATATCATACATTGCGCTCTTATTACTAGATCAAAAATCCCCTGAGGCTAAAATATTGAGGAGGATTATAATATTTTTAAAATTTTTTTTTAGGGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTTGTATGTTTTTCTAAAACTTATTTGTTACTCAACCGTCATTAATAAGGATTAGCGATGAAGTAATTTTTATTGTTTAGCAATATAAGTTATCCATTGTTGATTTCTATTTTTTTATAGTGTGTTTTTGTTTGTTTAATTAATGTATGTTAATTTTATGTGACATGTTTAATTTGTGATTAAAAAATTATTTAGTTCGTCGCTTATAAATATTTGATGTTTAAATGGAGAAGGATATATAAAAAAAGTTCATTATTCATCGAGTTTTGACTAGTATACATTTAGTTAATCTTCAAAAATTTAGATCAAGATTGAGAAAAAAAAAACTATTGTACTTATCGTTACTACCTTTTTAATACGTATTTTTGTTTGAAAACATAGAGAACTTCCTGTATTAGAGAAAATTAAATGTTTTCATATGTTTGATCGATTCTTATTACTATTCAAGATTGACTTGTTGAAAATGTTTTTGATGTTTCGATGGAAATGTTTGTTCAAAATTCTTTGATAGTAAATTTGTTTGAGACTGAAACGTTAATTGTTGTTATTTTGATGATTATAAAAACAGGCAGGAGGGCCAAATGTTCAAATTCCAACAGGAAGAAAAGATGGAAGAATTAGTTTGATAAC-AAATGTGAGACCAAACATAGTGGACACAAGTTTCAC-AATGGATCAAATGATTAATATTTTTACTATAAAGGGACTTTCTTTAGATGATCTTGTTATCCTATCAGGTACATGCATTATATTATTTAATTAAGCAATTTATTTTTCATTGATCTTTAATTTTTATCCTAAAAATCGAATTTCTAAAAGGTGCCAATAATTTCTAAGGTGAGAAGACAAAGTCATAATGTATTTAATATTAGGGTCACAAAAACTTTATGAGTAGATAGTACTAAAATTTAAGTAGGGTTACAAGAATTTAAAGTCATTTATTTCTCATATTTGATAATAACTATGACTCAATTCCATATAAACTATAATATTAGATTTAAACGTTTAATATACAATAAAATTACTCAATTTAGCGATAAATTTGATTCTCTTCCCATAAAATAATGTTTAGATATGTAAAAAGGAGATCGAGTTACACGTGTTCTTAATCTTAAATGTAAAGATATAGGGATCCATATATATACACATAATATATTTGTTTAGATAGGCCTCAATGACCCCTTTCTCATTTTGAAAAACTTATGTAATCCTATTCTAACCCGATTCGATATGGAATGAACTTATAATCATATACTATCGATTTCATTTCACTTAAGACGTGAAATTACAATCTTTTTTATTTTATTTCGTCATGTTTCCATAAGAATTTATATAGCATGTGAGAAATATTGAAAATTAATTAGCAATATTTTTTATTATTGTTTCTTATACTTCAATTATCTTTTGCTATTTAATATGTTGCTACTTTTCTTTCTTCCATACTTCCACCATTATACTGTTTTTCTATAGCATTCTTCTGATTTTTTTTTAAAAAAAATCGAGAATCAATAAAAAAACATTCACTATACCTCCAGAAAGGTAGGTTTATTATATATTTATGAAAAATAGTTTTTGATCGGTCTATATATATAAACATAACATAATTTTTTAACGAGAAATATTTGATTGACCATTCTGGACTATATATGACTTACATCACTGGGTGTAACTACGTAAGATCTTCATACAGTACTACTCCTTCCCTAAATTTCACTTGTGCGATTACATTGCGTATATGACGTTACTAATACTTTTGTTGTATGCCAAAAAATTGTAGGTGCACACACAATAGGATCAGCACATTGCAATGCATTTAGTGATCGTT</genome_strand>
        <mrna_strand>CCTTTTACACCAAAAATATATATGGAGAAACTCAAACTACAATTTTATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCAAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGAAAATTGCTTCGTCTTCTTTTTCACAATTGCTTTGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGCATCTATATTATTAAAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGGGCCAAATGTTCAAATTCCAACGGGAAGAAAAGATGGAAAAATTATTTTGATAACAAAATGTGAAACCAAACATAGGGGACACAAGTTTCACAAATGAATCAAATGATTAAAATTTTTACTATAAAGGGACTTTCTTTAAATGATCTTGTTATCCTATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACACACAATAGGATCAGCACTTTGCAATGCATTTAGTGATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E325245" ref_strand="+" ref_description="SGN-E325245 [cTOC-1-E22]">
      <seq>taacaccaaaaatatatatggagaaactcaaactacaaatatattcaatccaaacactatgtttacgcaaaaaaaaatataaattttcgttacttattttcttgtgttcgataatatttttttcgaaaacatcatgttcaactctttcatttaatttttatggattatcttgtccctcagctgaattaatggtgaaaaatacagtaagatcagcttcttctatggatccaactatacctgggaaattgcttcgtcttctttttcacgattgctttgttgagggttgtgatgcatctatattattagaaggaaatggaacagaaagaagtgatccagcaaacaaatcacttggaggattttcagtaatagaaaatgccaaaagggttttggaaatattttgtccttttacggtttcttgtgctgatattgttgctttggcggctagagatgctgttgaatttgcaggagggccaaatgttcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8444" stop="10758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8744" g_stop="9024" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9025" i_stop="9688" i_length="664">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9868" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="461" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9869" i_stop="10433" i_length="565">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10434" g_stop="10458" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="486" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E325245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8744" e_stop="9024"/>
          <exon e_start="9689" e_stop="9868"/>
          <exon e_start="10434" e_stop="10458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAGGTAATATTTCTAGTAATTATCTATTTAATTTTTATGCATTACGCTTGTATAAAAGAAATTTGGATTAACTACTTTGCATGCAATTACGTAACTAGTAGTGTATATTCTCACTTCAATTTACACTCTACTGTAGTTAATTTTATCGATTTGATGTGAACACTGAATAAAGTTTAATTCAAATAAATTTAATAAAGTTCTTAAATTCTTCCTCAAATAATACTTCTGATCTTAATTTACATGACATCATCTGATCAAGCATGAAGTTTTATAAATAAAATAAATACTTAATTGTGATCTAGAAATATTGTATTATTATAAATTATCTCATTTAAGCAATTAAGTAGTTTTCAATATAAATAAGTGACATTAATCACTTCTAAGAAAATAAAAAGAAAAAAAAAACATGTCATAAATTAAGGCAAATGACGTAATATTTTATCATATGAAAGATTGATTAATTTTTTTCTGAATAATAGGCCCTCCTGTCTATCCTTGTCCATTTAAGTACCAAACTATATTTTTGTGTTGATTAGGATTAAAAACTCGTAACTTGCATCTAACTTACACATCTGATATCATACATTGCGCTCTTATTACTAGATCAAAAATCCCCTGAGGCTAAAATATTGAGGAGGATTATAATATTTTTAAAATTTTTTTTTAGGGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTTGTATGTTTTTCTAAAACTTATTTGTTACTCAACCGTCATTAATAAGGATTAGCGATGAAGTAATTTTTATTGTTTAGCAATATAAGTTATCCATTGTTGATTTCTATTTTTTTATAGTGTGTTTTTGTTTGTTTAATTAATGTATGTTAATTTTATGTGACATGTTTAATTTGTGATTAAAAAATTATTTAGTTCGTCGCTTATAAATATTTGATGTTTAAATGGAGAAGGATATATAAAAAAAGTTCATTATTCATCGAGTTTTGACTAGTATACATTTAGTTAATCTTCAAAAATTTAGATCAAGATTGAGAAAAAAAAAACTATTGTACTTATCGTTACTACCTTTTTAATACGTATTTTTGTTTGAAAACATAGAGAACTTCCTGTATTAGAGAAAATTAAATGTTTTCATATGTTTGATCGATTCTTATTACTATTCAAGATTGACTTGTTGAAAATGTTTTTGATGTTTCGATGGAAATGTTTGTTCAAAATTCTTTGATAGTAAATTTGTTTGAGACTGAAACGTTAATTGTTGTTATTTTGATGATTATAAAAACAGGCAGGAGGGCCAAATGTTCAAATTC</genome_strand>
        <mrna_strand>TAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGGGCCAAATGTTCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E325468" ref_strand="+" ref_description="SGN-E325468 [cTOC-1-D24]">
      <seq>tggagaaactaaactacaaatgtttcatatcaaacactatgttctcaaaaaaaattaatttcgtctattttcttggttcgatatattttttcgaaacatatgttcaactctttcattaatttttatggattatcttgtccctcagctgaattaatggtgaaaaatacagtaagatcagcttcttctatggatccaactatacctgggaaattgcttcgtcttctttttcacgattgctttgttgagggttgtgatgcatctatattattagaaggaaatggaacagaaagaagtgatccagcaaacaaatcacttggaggattttcagtaatagaaaatgccaaaagggttttggaaatattttgtccttttacggtttcttgtgctgatattgttgctttggcggctagagatgctgttgaatttgcaagagggccaaatgttcaaattccaacaggaagaaaagatggaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="8462" stop="10782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8762" g_stop="9024" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9025" i_stop="9688" i_length="664">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9689" g_stop="9868" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="426" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9869" i_stop="10433" i_length="565">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10434" g_stop="10482" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="475" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E325468" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8762" e_stop="9024"/>
          <exon e_start="9689" e_stop="9868"/>
          <exon e_start="10434" e_stop="10482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAGGTAATATTTCTAGTAATTATCTATTTAATTTTTATGCATTACGCTTGTATAAAAGAAATTTGGATTAACTACTTTGCATGCAATTACGTAACTAGTAGTGTATATTCTCACTTCAATTTACACTCTACTGTAGTTAATTTTATCGATTTGATGTGAACACTGAATAAAGTTTAATTCAAATAAATTTAATAAAGTTCTTAAATTCTTCCTCAAATAATACTTCTGATCTTAATTTACATGACATCATCTGATCAAGCATGAAGTTTTATAAATAAAATAAATACTTAATTGTGATCTAGAAATATTGTATTATTATAAATTATCTCATTTAAGCAATTAAGTAGTTTTCAATATAAATAAGTGACATTAATCACTTCTAAGAAAATAAAAAGAAAAAAAAAACATGTCATAAATTAAGGCAAATGACGTAATATTTTATCATATGAAAGATTGATTAATTTTTTTCTGAATAATAGGCCCTCCTGTCTATCCTTGTCCATTTAAGTACCAAACTATATTTTTGTGTTGATTAGGATTAAAAACTCGTAACTTGCATCTAACTTACACATCTGATATCATACATTGCGCTCTTATTACTAGATCAAAAATCCCCTGAGGCTAAAATATTGAGGAGGATTATAATATTTTTAAAATTTTTTTTTAGGGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTTGTATGTTTTTCTAAAACTTATTTGTTACTCAACCGTCATTAATAAGGATTAGCGATGAAGTAATTTTTATTGTTTAGCAATATAAGTTATCCATTGTTGATTTCTATTTTTTTATAGTGTGTTTTTGTTTGTTTAATTAATGTATGTTAATTTTATGTGACATGTTTAATTTGTGATTAAAAAATTATTTAGTTCGTCGCTTATAAATATTTGATGTTTAAATGGAGAAGGATATATAAAAAAAGTTCATTATTCATCGAGTTTTGACTAGTATACATTTAGTTAATCTTCAAAAATTTAGATCAAGATTGAGAAAAAAAAAACTATTGTACTTATCGTTACTACCTTTTTAATACGTATTTTTGTTTGAAAACATAGAGAACTTCCTGTATTAGAGAAAATTAAATGTTTTCATATGTTTGATCGATTCTTATTACTATTCAAGATTGACTTGTTGAAAATGTTTTTGATGTTTCGATGGAAATGTTTGTTCAAAATTCTTTGATAGTAAATTTGTTTGAGACTGAAACGTTAATTGTTGTTATTTTGATGATTATAAAAACAGGCAGGAGGGCCAAATGTTCAAATTCCAACAGGAAGAAAAGATGGAAGAA</genome_strand>
        <mrna_strand>TGGAGAAACT-AAACTACAAATGT-TTCATATCAAACACTATG-TT-CTC-AAAAAAAAT-T-AA-TTTCG-T-C-TATTTTCTTG-GTTCGAT-ATATTTTTT-CG-AAACAT-ATGTTCAACTCTTTCAT-TAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGCCAAATGTTCAAATTCCAACAGGAAGAAAAGATGGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E243267" ref_strand="+" ref_description="SGN-E243267 [cLEF-12-B11]">
      <seq>ttttttctttcaagtccatttttctcttctttctttttctttaatttcatttgcttatttctttttttttttcttcctcttttgaattagatttaatatgttaattttgttgattgaaatgtattttggcgataattaagcatttgcaatttgaataatttggattttttggtggatcgtaatgggttatttgaattccgcgttgtcatcttcttctaatcaaattcatgctgatgatgcgcctgtttatggcggtggattaagtcaaaatgggaagtttacctatggatattctagctccccgggaaaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14562" stop="18074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14862" g_stop="14951" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15073" g_stop="15245" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="264" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.675" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17725" g_stop="17774" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="314" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E243267" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14862" e_stop="14951"/>
          <exon e_start="15073" e_stop="15245"/>
          <exon e_start="17725" e_stop="17774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAGGTAAATTTCAACAAATGTTGTTATCTATAATTATATATTAATTTCATGTTTGATTTATGTATTTTTAGTTTTAGATCTGAATAGAATTTTGATATTTTTGTGTGTGTGTTTTTTTTTGCAGATTTAAT-TGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGT</genome_strand>
        <mrna_strand>TTTTTTCTTTCAAGTCCATTTTTCTCTTCTTTCTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAG.........................................................................................................................ATTTAATATGTTAATTTTGTTGATTGAAATGTATTTTGGCGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCCGCGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTTATGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTACCTATGGATATTCTAGCTCCCCGGGAAAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E244901" ref_strand="+" ref_description="SGN-E244901 [cLEF-2-J18]">
      <seq>ttctttcaagtccatttttctcttctttttttttctttaatttcatttgcttatttcttttttttttttcttcctcttttgaattacatttaattgctaattttgttgattgaaatgtattctggtgataattaagcatttgcaatttgaataatttggattttttggtggatcgtaatgggttatttgaattcggtgttgtcatcttcttctaatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaactgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14566" stop="18100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14866" g_stop="14951" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15073" g_stop="15245" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="260" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17725" g_stop="17800" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="336" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E244901" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14866" e_stop="14951"/>
          <exon e_start="15073" e_stop="15245"/>
          <exon e_start="17725" e_stop="17800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTC-TTTTTTTTTTTCTTCCTCTTTTGAATTAGGTAAATTTCAACAAATGTTGTTATCTATAATTATATATTAATTTCATGTTTGATTTATGTATTTTTAGTTTTAGATCTGAATAGAATTTTGATATTTTTGTGTGTGTGTTTTTTTTTGCAGATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACA</genome_strand>
        <mrna_strand>TTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTTCTTCCTCTTTTGAATTAC.........................................................................................................................ATTTAATTGCTAATTTTGTTGATTGAAATGTATTCTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACTGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E244814" ref_strand="+" ref_description="SGN-E244814 [cLEF-2-I15]">
      <seq>ttctttcaagtccatttttctcttctttttttttctttaatttcatttgcttatttcttttttttttttcttcctcttttgaattagatttaattgttaattttgttgattgaaatgtattttggtgataattaagcatttgcaatttgaataatttggattttttggaggatcgtaatgggttatttgaaattcggggttgacatcttcttctaatcaaattcatgctgatgatgcgcctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14566" stop="15528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14866" g_stop="14951" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15073" g_stop="15228" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="244" r_length="157" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E244814" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14866" e_stop="14951"/>
          <exon e_start="15073" e_stop="15228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTC-TTTTTTTTTTTCTTCCTCTTTTGAATTAGGTAAATTTCAACAAATGTTGTTATCTATAATTATATATTAATTTCATGTTTGATTTATGTATTTTTAGTTTTAGATCTGAATAGAATTTTGATATTTTTGTGTGTGTGTTTTTTTTTGCAGATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTG-AATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTT</genome_strand>
        <mrna_strand>TTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTTCTTCCTCTTTTGAATTAG.........................................................................................................................ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGAGGATCGTAATGGGTTATTTGAAATTCGGGGTTGACATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E204532" ref_strand="+" ref_description="SGN-E204532 [cLEC-24-G11]">
      <seq>tcgagttttctttaatttcatttgcttatttctttttttttttcttcctcttttgaattagatttaattgttaattttgttgattgaaatgtattttggtgataattaagcatttgcaatttgaataatttggattttttggtggatcgtaatgggttatttgaattcggtgttgtcatcttcttctaatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaaatgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14596" stop="19387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14891" g_stop="14951" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15073" g_stop="15245" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="234" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17725" g_stop="17852" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="362" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="461" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19014" g_stop="19087" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="535" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E204532" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14891" e_stop="14951"/>
          <exon e_start="15073" e_stop="15245"/>
          <exon e_start="17725" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAGGTAAATTTCAACAAATGTTGTTATCTATAATTATATATTAATTTCATGTTTGATTTATGTATTTTTAGTTTTAGATCTGAATAGAATTTTGATATTTTTGTGTGTGTGTTTTTTTTTGCAGATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACT</genome_strand>
        <mrna_strand>TCGAGTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAG.........................................................................................................................ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E321470" ref_strand="+" ref_description="SGN-E321470 [cTOB-23-F23]">
      <seq>atttaattgttaattttgttgattgaaatgtattttggtgataattaagcatttgcaatttgaataatttggattttttggtggatcgtaatgggttatttgaattcggtgttgtcatcttcttctaatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaaatgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcacgggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggacgttttgtgatgtgggcacgtacctggagaagttgangtgtactttgctgttctcgtgcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14773" stop="20415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15073" g_stop="15245" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17725" g_stop="17852" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="301" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="400" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="559" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="646" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20203" g_stop="20247" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="691" r_length="45" r_score="0.844"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E321470" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15073" e_stop="15245"/>
          <exon e_start="17725" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTAC-TTGCTGTTTCTCGTGCTTTTG</genome_strand>
        <mrna_strand>ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCACGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGACGTTTTGTGATGTGGGCAC..........................................................................................GTACCTGGAGAAGTTGANGTGTACTTTGCTG-TTCTCGTGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E251787" ref_strand="+" ref_description="SGN-E251787 [cLEG-15-J20]">
      <seq>ttgaattagatttaattgttaattttgttgattgaaatgtattttggtgataattaagcatttgcaatttgaataatttggattttttggtggatcgtaatgggttatttgaattcggtgttgtcatcttcttctaatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaaatgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14771" stop="19443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15073" g_stop="15245" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="182" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17725" g_stop="17852" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="310" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="409" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19014" g_stop="19143" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="539" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E251787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15073" e_stop="15245"/>
          <exon e_start="17725" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTC</genome_strand>
        <mrna_strand>ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E253023" ref_strand="+" ref_description="SGN-E253023 [cLEG-25-L18]">
      <seq>tctaatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaaatgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14896" stop="20415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15196" g_stop="15245" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17725" g_stop="17852" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="178" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="277" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="436" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="523" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20203" g_stop="20208" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="529" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E253023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15196" e_stop="15245"/>
          <exon e_start="17725" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCT</genome_strand>
        <mrna_strand>TCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E210431" ref_strand="+" ref_description="SGN-E210431 [cLEC-35-I13]">
      <seq>taatcaaattcatgctgatgatgcgcctgttagtggcggtggattaagtcaaaatgggaagtttagctatggatattctagctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="14898" stop="19475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15198" g_stop="15245" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.675" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17725" g_stop="17852" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="176" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="275" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="434" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E210431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15198" e_stop="15245"/>
          <exon e_start="17725" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAGGTGATTTTGATTCCTTTTTTAGTTTACAGATTTATTTATTTTTGATGATTTTTTGTTAATTTGATTGCAAAATTATGTGTGCAAGATGCAGAATGGTTGTATAAATCGGAGACGGATTTAGAATTTTGAGTTTGTGTGTTATGGATTGTAGAAAAAATTGCAGGTTATATGGTACTTGATAGTTGTTGTTGGTGGGAGGTGACAGGTATCTCGTTGAATTAGTTGAGGTGACGTGAGCTGGGGTGGACATAAAATACAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGTTGGTGGGAGGTGGTAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTGCTAAAGATATTGGTTTTTCTGAACCATAACTAGAACTCTAGCTATGCTCCTGATACGTGTTGGTGGTGGGAGGTGTTAGGTATACCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCTTGATACGTGTTGTTGGTGGAAGGTGGGAGGTATTCCGTGGATCATGGTTATAAAAAGATGCAACTTTTTTGCTAAAGATATTGGTTTTTCTGAACCCATAACTAGAACTCTAGCTATGTCCCTGATATGTGTTGTTGGTGCGAGGTGGGAGGTATTCCGTGGATCATGGTTATAAGAAAAAGCATTTTTTTTGCTAAAGATATTGGTTCTTCTGAAACTCATAACTAGAACTCTAGCTATGTCCTTGGTATGTGTTGTTGGTGGGAGGGGACAGGTACGTGTGGATCATGGTTATAAAAAAAATGCATTTTTTTGCTTAAGATATTGGTTCTTCTGTCCCCATAACTAGAGTTCTAGCTAGCTATGCCAATGATATCTATAAAGAACACCCAATTGCTTATTTACTTGTGTTTAATTTTATGTGGATGTTGAAAGTTCTGTTGGCTGTTTTCGGTTAGCTATTTATGAATTGTCGTTTCCTCGTTTGTTTGATATTTGTTTGATTCATTTTCCTCTTGGGTGATGAATGCATTTCTAGTTTTAGTTGTCGTAACCCTTTAAATGGGTACTTTTGTCGTTGAGCTAAAATTGGATTGTCGTTTGCTGAATTCGATGTTTGGATTTCCTTAGTCGTTTAGGAAGCTAAAAGAAGAGGGAGACTGAAGTAGATGGGTAAACTTAGCGAAAAAGGAGATGATTGAACTTGGTGGCTTAATGTTATTTCTTCTTCTCCTGGAATGTGGTTATGAGTTGTTTTTGTGAACTAAATGTGTGATCTGTATCATGTGTTAGCTCGTACTTGAATTAGTTGATGAATGTTCGTGATGGAGATGCATGTAAATAAGCAAGTGCCGATTCCTATACTGACACACGTGTACAACAAAGAATTATTATTTTTCCATATGTCCCTGAAGATAAAGGGAGTACATGTTTAAGTAGCAACCGAAGTGTTGTTGACTTTGAAGAATACTCTTTTTCTCCTTACTCTTTAATATCATCGTAATGTTTTTGCTATCACTCTAGATCGTATATAGCATAGTTGTATATTTAGATTCCCCTATTCTATTCCGTAAGTTAAGTAATTCTCTTAAGCCACCCACCATATACATTTATACATTGCTGTGGGCTAAGCTAAAAAATACTATTTCAATGATGGCCCTCCATGGATTCACCTATATAAGCAGCGGCTAAAGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGGAGCATGACAGGTAAACATCAGAAGTTTTGAGAATGCATGAGAGCTATTACTCGAATTCCTTGTGGTTTGTCGATATAATGATGTCTTAGTTACTAATATTTCTTTTCTTCCCGCTTACAAACACCATTTTCAAAGAAGCTGCTAATTTACTGTACATCCATTTGGTACTCTAATAAAGTAGTTACCTGTTTACATAGTGTCCTTGTGCACCATGCCTGAATGGTAATACCAAGTTCAGCTTTTAATAGGTTACCGTATAATCCATATCATTATCCATATGAAGGTTCACTTTTAAAAAACGGGATGTAGATCATATTACATTGCTATCAAATCCATATTATTCAAGTTCCATTCACAATATTATCTGACTGGATATGACAAATACTAGTTAAAACCTGAACAAGACAATGGAAATTACCCTGAGATAATTGGAGTAACTTTTGACAATTTTCTGAGCTCACATAAAACTAATTTATGGTGATATCACAAATACTAGTTATATGCAGTCGTGTTTGTTCAGGGCATTTTGAAAATTATATTCTGACTGATCTTTTCCACATTCCATCTTATCCAGAAATCCCTTATATCGTTGTTCTCAGATTGCTATCATTGTAATTGTTTGAGTTTCAATGGAGGTTTATATAATATGCACAATGTTGCAAAACTGTAGCCTAACAAGTGCTATGCATTGCAGTCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG</genome_strand>
        <mrna_strand>TAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E549891" ref_strand="+" ref_description="SGN-E549891 [TUS-6-C21]">
      <seq>ctccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggctgatgcangaagcatatcaaagaggcagtgcagataacatcaccattgtggttgtccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17458" stop="21283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17758" g_stop="17852" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="194" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="353" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="440" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="532" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="607" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20869" g_stop="20983" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="722" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E549891" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17758" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="20983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTT</genome_strand>
        <mrna_strand>CTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCANGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E369476" ref_strand="+" ref_description="SGN-E369476 [TUS-23-E11]">
      <seq>tccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17459" stop="21229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17759" g_stop="17852" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="193" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="352" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="439" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="531" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="606" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20869" g_stop="20929" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="667" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E369476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17759" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="20929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGC</genome_strand>
        <mrna_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E231047" ref_strand="+" ref_description="SGN-E231047 [cLED-5-J11]">
      <seq>tccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17459" stop="21056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17759" g_stop="17852" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="193" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="352" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="439" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="531" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20756" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="600" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E231047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17759" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACG</genome_strand>
        <mrna_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E243641" ref_strand="+" ref_description="SGN-E243641 [cLED-34-J23]">
      <seq>tccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17459" stop="20577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17759" g_stop="17852" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="193" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="352" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="439" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20277" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E243641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17759" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCG</genome_strand>
        <mrna_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E231343" ref_strand="+" ref_description="SGN-E231343 [cLED-10-P19]">
      <seq>tccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17459" stop="20415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17759" g_stop="17852" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="193" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="352" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="439" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20212" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="449" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E231343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17759" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAG</genome_strand>
        <mrna_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E237606" ref_strand="+" ref_description="SGN-E237606 [cLED-19-C21]">
      <seq>tccccgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17459" stop="20411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17759" g_stop="17852" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="193" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="352" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20111" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="438" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E237606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17759" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCA</genome_strand>
        <mrna_strand>TCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E212651" ref_strand="+" ref_description="SGN-E212651 [cLEC-73-I7]">
      <seq>cgggaaaaaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17463" stop="21229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17763" g_stop="17852" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="189" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="435" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="527" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="602" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20869" g_stop="20929" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="663" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E212651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17763" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="20929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGC</genome_strand>
        <mrna_strand>CGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E706450" ref_strand="+" ref_description="SGN-E706450 [FA30AA03]">
      <seq>cgataaggtcctccatggaggatttctatgagacaagaattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcataatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagactctgagtttctgaaatcataaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggctgatgcaggaagcatatcaaagaggcagtgcagataacatcaccattgtggatgtccgttttctgggtaaccaagagggttcctctcgatgtacctcagcttaaaaagtaattaccacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17468" stop="21345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17766" g_stop="17852" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="186" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19034" i_length="112">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19035" g_stop="19172" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="324" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="411" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="503" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="578" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20869" g_stop="21045" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="755" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E706450" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17766" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19035" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="21045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCT</genome_strand>
        <mrna_strand>CGATAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCATAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG................................................................................................................ACTCTGAGTTTCTGAAATCATAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGATGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCTCGATGTACCTCAGCTTAAAAAGTAATTACCACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E255432" ref_strand="+" ref_description="SGN-E255432 [cLEG-30-P16]">
      <seq>aattgatggcgttgatggagaggtagtcggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtacgtcgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17503" stop="21049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17803" g_stop="17852" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="149" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="308" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20294" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="487" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20688" g_stop="20749" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E255432" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17803" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20294"/>
          <exon e_start="20688" e_stop="20749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGT</genome_strand>
        <mrna_strand>AATTGATGGCGTTGATGGAGAGGTAGTCGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTCGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E262615" ref_strand="+" ref_description="SGN-E262615 [cLEG-63-L7]">
      <seq>aattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagacacaagcctgaccaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctgnagagttggaggtgtacttgctgtttctcgtgcttttgcgatagacttttaagcagtacgttgtcgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17503" stop="20583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17803" g_stop="17852" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="149" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="308" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="393" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20283" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="472" r_length="79" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E262615" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17803" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATC</genome_strand>
        <mrna_strand>AATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGA-CACAAGCCTGACC-AACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGNAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTT-GCGATAGACTTTT-AAGCAGTACGTTGTCGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E251559" ref_strand="+" ref_description="SGN-E251559 [cLEG-9-M18]">
      <seq>aattgatggcgttgatggagaggtagttggtctctttggagtttttgatggtcatggaggtgctagggctgcagaatatgtgaaacacaaccttttcagtaacctgattaggcatccaaaatttatctctgacaccaaatctgccatagctgatgcatacaaccatacagactctgagtttctgaaatcagaaaacaatcagcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgcatcgaagatgctggaggttttgtgatgtgggcaggtacctggagagttggaggtgtacttgctgtttctcgtgcttttggcgatagacttttaaagcagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="17503" stop="20570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17803" g_stop="17852" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="149" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="308" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20026" g_stop="20112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20203" g_stop="20270" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="463" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E251559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17803" e_stop="17852"/>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20112"/>
          <exon e_start="20203" e_stop="20270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATGGTAACTCTTCTTTCTCTGTAACTTCTACATGACTGGAATGAAGTGCATGAAATAGAGTGAATGAGAAAAGACATATCTTCATTTGTTTTTATGTTTAAGCATTTCTGTGTCATTCAAGATTTGGCAAGTAAGACATTCAGTCTGATGACTATAAATTTGTCTTAAATTTTGTGGTTGCATCAATGCTGTTTCTTACTTCATAGATCCTTATATTTTTTTTCTGTTTAATTGTGTTTTGAAGGCGAAGCTTGAGGATTGCTTCCATTGTCTTTTACAAGCATTTTTTTGGGCCAAATACATAGACAGTCGGACCCCTAAACTAATTCGGAAATTCCATTTGACCACTTGAATTAAATTTGTTTCCATTTGAACATTAGATCTTTATTCAAATTGTGCCATTTAGACACGTTTTTCTCAATAATCTCAAAGTAAGCGCGTGTGTTCACACGCGTTGAGATGGAGAAACAACCAATTTAGCTATGTCACATGAATTTTTTAACCCAAAAAAAATTGTTAGGAAAAATATTTTGACCAAAGAAATAAAGTTATCCTTCAATAGACCAACGCCGCATGGTTTTCTTAACCAAAATAAATTTTAAATAAAAATGACCATCGTTATCTCCTTCTCCCATACACCACCTTCTCCCCCAAAACACTATCTTTTCCAATTAGCAATCACCATCTGCACCTTACTAAATTCAATAAATTAAGAAGGAAGCTTCCTACCGTCCCTCTCAAATTCCTCATGCAACTTTTCCTCCCGGCTGCCACATCTGCTACATCTTTTGTTGCTCTAAAACGTCTAGATCCTTGCTGGTTCATTTTCGCCCTTGGTGCAATACCAGTGTGTATATCTTTGTTAATTTTTTGGAGGCTGCTTAAAGATAATAATTAGAAAGTTCCAATTCATGCCAAGTTGGTCAAATGTTTTCCAATTGGGTATTTTTACCTGCATTTTGCTCTTATTTCAGGTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAGGTAAGCCCATCACATTTGACAGTCCGTTTTTAGTCTATTGATTTTTTTCTAAATCTCGTGCAAGTCTAAACGTAACATATTGTGTTGCAGGTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTAC</genome_strand>
        <mrna_strand>AATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG..........................................................................................GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E247152" ref_strand="+" ref_description="SGN-E247152 [cLEF-46-D3]">
      <seq>agtttttgatggtcatggaggtgctagggctgcaaaatatgtgaaacacaaccttttcagtaacctgattaagcatccaaaatttatctctcacaccaaatctgccatagctgatgcatacaaccatacacactctgagtttctgaaatcagaaaacaatcatcacaaagatgctggatcaactgcttctactgccatacttgtgggtgatcgtctacttgttgcaaatgtgggcgattctagagctgttatttgcaggggtggcacagctattgctgtttctcgagaccacaagcctgaccaaacagatgagcgacagcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="18515" stop="20379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18824" g_stop="18922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19014" g_stop="19172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="269" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20026" g_stop="20079" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="323" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E247152" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18824" e_stop="18922"/>
          <exon e_start="19014" e_stop="19172"/>
          <exon e_start="20026" e_stop="20079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAGGTATGTTGACGTACTGTGAAGTATCGTTGCTATGTTCCTTTTCACAAATAACTTATCTATATCTTTGTCATTCATATATTTGTTTCTGCAGCTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAGGTAAGGCTTAGGCGATTTGATTCTTATTTGGCTTTTGGTTCCTTCTCAGAGTATTTCACCCCAAAAGTATGATGCATTTTGGTATATAATATCTGCGTTAGAGCAACCTCAAAAGTTTGTTATGATTTTGGTATCCCACGATATTTGGTTGTTGTCGTACTAAATATGTTGCAAGTTATTCTTATTAAGTTTTACTTTTCTAATTACTCGGTCTTAACACTATGAGGACCTGCACTGTAAATGTAACGTTTCACTGCTCTTTGAAGTCAGGAGAACAAGATGGGGATTCTTTACTTTTTGTTTTAGAGAGAATGGAGTAAAATAAAAGTGCATTTGCATATTGATGGTATATCCTGAAATATTGTGGGAATATGGAAGATGTCATGCTAGCACTTCCAATAATACATATTTCTTAATCCAATAAGAAGACGTTCTTTTGCATTGCACTTCATGTCTTGGTTCACCATTGTTTTGAATATGTCAGATAGTTGATCGAGAAGCCACTGCCAAAGATTAAAAGAAATTGGTAATTGGTGCTAGTTCGTTACTTCTCTTTCTTCTTCAACTCCCATGAACAGTTTGTTGTTGTTAACATATAATTTGGCAGTGTGACAAGCAGGTCAAGGGTTCTAGCCCCCCAAAACCAGCCTCTGCAATATAAGATTGCTAACATAAGACCCAATGTGGTTCACCCCTTCTCTGAACCCCGTGTATAGCATGAACTTAGTGTACCAGACTGCCCCCTTTTTTTTTTTAATGTCTGTTACAGTACGGTACATCTTTGATTAATAATTCATTATGACCCTGTAATTTAACTCAGTCACCTGATTGGGGATGCTAATTTCATTCTCAGCTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCA</genome_strand>
        <mrna_strand>GTCATGGAGGTGCTAGGGCTGCAAAATATGTGAAACACAACCTTTTCAGTAACCTGATTAAGCATCCAAAATTTATCTCTCACACCAAATCTGCCATAG...........................................................................................CTGATGCATACAACCATACACACTCTGAGTTTCTGAAATCAGAAAACAATCATCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E369475" ref_strand="-" ref_description="SGN-E369475 [TUS-23-E11]">
      <seq>cttttaaagcagtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttttcatccttgcaagtgatggactttgggacgttgtaacgaatgaggaggctgtttcgatggttaagccgatccaagatcctgaaaatgcagctaaaaggctgatgcaggaagcatatcaaaaaggcagtgcagataacatccccattgtggttgtccgttttttgggtaaccaaaagggttcctcccgaggtacctcagcttaaaaagtaattaccacttttaactcgtggtaataaaacgacaaaaaaacccataggacgtaacgtaaatattgaatataaatagatttttgggtttatgatgtaaggaaaatttttaaaattgaacattgtcaaagctttttttcaacttgtatgaagtgttcaaaagtgaatttgggcataagtcaaatcccaaattattgatgttttatgtttaacatacagtagctttataatatatactgctgtttttttgtaatccccattttattgcattttgattccccagtgtataacaacatttgttatattatatttatatagtccgactttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="19956" stop="100409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20256" g_stop="20294" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20869" g_stop="21360" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="606" r_length="492" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21361" i_stop="23816" i_length="2456">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.253" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23817" g_stop="23854" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="644" r_length="38" r_score="0.553"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E369475" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369475" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20256" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="21360"/>
          <exon e_start="23817" e_stop="23854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCTATAACAGTCATCTCTGTCTTCACCAGTAGTCTTTACAAGAACACTCTCCACCTTTAAAGTGATGAAACCTGTTCCTATCTCTAACGATGATTTCGAGATTATAAACTTTTGAGATGAACTTACTTGCTTGATGACAGTCCTTGCAAACGCGTAAATTCTTTGTGATTCGAAGAATATCCCCAGGTTTGCTCTTTAATAACCCGAAAGCAATAGCTAGTTTCTCACTATGATAGTTCAATGGATTCTCTGTTTCTTCCTCATCGATGTCATATTGCATTCCATCAGAATCTGGAGAATAGCCTGCAGATTTTATACACTCCAGCATTTCGTTTGCTTTTACATATATCTCTTCGGCTTGAGGATGAGTTCTTCCTCCTGCAATGAACTCGTTAACAACGCCTTCTAATTCAACGATGGAGAAGCCAGGTACCTTCTTCACTCCCCTGTCATTCATCAACTTTCTTATACTGGCAACATCTTCCCATCTACCTGCATTAGCATACAAGTTAGCTAACAACACGTATCGACCACTGTTCTGGGGTTCTAACTCGATCACTTGCTTCCCTATCTTCTCTCCGAGCTCTACGTTCTTGTGAATCCTACATGCACCAACAAAAGCACCCAATACACCTACATCAGGACTCATAGGCATATCGTTTACGACCCTTCTTGCTTCTACCAGTAATCCAGCTCGTCCGAGCAAATCAACCAGACATCCGTAATGCTCCATGCCAGGTTCAATGCCATACGTTTCTTTCATGTAACGAAAATAGTGTTTTCCTTCTTCAACCAACCCGGAATGAGCACAAGCACTAAGTAGATTCACAAACGTTATATAGTCTGGAGCTACCCTCTCACTCTCCATTTCCTTCAAAACCTCAATGGCAGCCTCACCTTCCCCGTGCATCGCCAACCCTCCAATCATACAATTCCACGACGATATTCCTTTTCTTGACAAACCTTGAAAGAACTCCACAGCCTTATCTAAGCAGCCACATTTGCAATACATATCAACAATCGTAGCACTCAATTTCGAGTCTAACTCAATCCCACTCTTCTTGACATGTTCAACTATCCACTCACCTTGCTTCAACGCTCCAAGTCGCGTACAAGCTGACAACATACTCGCAGCAAGAAACTTATCAACCACAACACCCTCACACCCCATCCTTTCGAACAAAGCAAACGCCTCATGAAACCGGTTACTCTGCACATAAGCTGATATCATAGCATTCCAAATAACACAACTTTTCTCCCTAATCGAATCAAACACTTGAAAAGCTTCATCAACATACCCCAATTGAGCATAACCACTAATCAATGTAGTCAATGAAACATCATCTCTCTCACACATATTATCAAACACCCTCTTCGCTTCCTCCAAACATCGAAAACTCACATACATATGAATCAAATTGTTCTGCGAAAATCGATCAAATCCGAACCCAAACTTCACCACATGTCCATGAATCTGTTTACCTTCTTCCACAGCATTGTCAATACAACAAACTCTAATAAGAGGTGGAAAAGTGAAACTATTAGGCCGAACTGAACTTTCTAACATACACAGGTAAAAAAGCAAAGAATCTCTCAGCATTTGAGATTTCAATAAACCCCTAATAACAGTATTGTAGATAAAAGGGTCTGGTTCAGGCAATTTATCAAACACTTGGAGGGCATAACTCAAATCGCCCAATTCAGATATTGCACAGAACTTAATAACTCGACCCATTGCGTCATTGTCATGGGAGAGGCCATGCTTAACAATTTGCGCATGGAACTGTTTGAGTTTCGACATTGATGAACATGATTCTAAGCCCCTTAAGGTATTGACATTGCTAGTTTGGTGTGACAATGGAGATTGTGGAGTAGGAATAACGGAGGTAATAGTTGCTTGCATAGCTAGTCGTAAGCTGCTCGCAAAACTACGTATAAGCTACTTGTAAATTAGTTTAGGAAATTGATGGTAATTTATAACTTAATTCAGAAAGCTACTTGTCGATTGCTTTATTAATTACTTTAAGAAACTGATTGTAATTTGGAGTTGGATATTGAAGTTGATAACTTGTTGTGTGTTTGAAACTAATTACTAATGATAAAAGAAAAATGATAAATATATCTCCTGAATTATCGTAGATGGTATACATACATCCTTCATTATATTTTAGGGACATTGGTGCCCCTGTAGTCCAAAAACTAGAATGTATATCCCTTTATACTAACGGACATACACGTGTCATAATCTTATTCACCGACCCGAGATCGAATCGATAGATAAGATTGTGCCACGTGTTCCTATTTAGTCTTCCGTTAGAGTAAAGGACATATACACTTTATTTTTTTTACGAAAGAATGTACTAAAAACATAATAAAAAGTATCTGCATATCATTTATGATAGTTTGGGAATAATATATATGTCCTCTTTCCCTTAATGATATACATGGACATGTTATAGGATTAGATACTAATTAAAATGTTTGAAAAAAAGAACAA</genome_strand>
        <mrna_strand>CTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTTTCATCCTTGCAAGTGATGGACTTTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTTTCGATGGTTAAGCCGATCCAAGATCCTGAAAATGCAGCTAAAAGGCTGATGCAGGAAGCATATCAAAAAGGCAGTGCAGATAACATCCCCATTGTGGTTGTCCGTTTTTTGGGTAACCAAAAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTTTAACTCGTGGTAATAAAACGACAAAAAAACCCATAGGACGTAACGTAAATATTGAATATAAATAGATTTTTGGGTTTATGATGTAAGGAAAATTTTTAAAATTGAACATTGTCAAAGCTTTTTTTCAACTTGTATGAAGTGTTCAAAAGTGAATTTGGGCATAAGTCAAATCCCAAATTATTGATGTTTTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTTTTGTAATCCCCATTTTATTGCATTTTGATTCCCCAGTGTATAACAACATTTGTTATATTATATTTATATAGTCCGACTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E313591" ref_strand="-" ref_description="SGN-E313591 [cTOA-12-N16]">
      <seq>agtacgttgtcgctgatccagaaatacaggaggaaaaggtcgatggctctcttgaatttctcatccttgcaagtgatggactctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggctgatgcaggaagcatatcaaagaggcagtgcagataacatcaccattgtggttgtccgttttctgggtaaccaagagggttcctcccgaggtacctcagcttaaaaagtaattaccacttctaactcgtggtaataaaacgacaagaaaacccataggacgtaacgtaaatattgaatatagatagatttctgggtttatgatgtaaggaaaatctttagaattgaacattgtcaaagctttctctcaacttgtatgaagtgttcaagagtgaatctgggcataagtcaaatcccaaattattgatgttctatgtttaacatacagtagctttataatatatactgctgttttcttgtaatccccattttattgcattttgattcaccagtgtataacaacatttgttatattatatctatatagtccgacttttctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="19966" stop="21666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20266" g_stop="20294" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20688" g_stop="20762" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="104" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20869" g_stop="21373" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="609" r_length="505" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E313591" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20266" e_stop="20294"/>
          <exon e_start="20688" e_stop="20762"/>
          <exon e_start="20869" e_stop="21373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACGTTGTCGCTGATCCAGAAATACAGGTGACTCGAACAACTTGTTTAATTGTTTCAACATAGGAATTCATGTTTCGAAATGAATATCAAATGTTCTGTGTGAATGTATTTGTACTTTTCAACCTATTTTCTCGATGTATATGTTGGCACATTTCGGAAACCGTTTAGTAGTTAGTCCTCATTGTATCACATTCCCATTTTTTTCAGCCTTATGCCCAACAGACTCTTCCTGCTTGATTTCATTTTTCCATCTCATAATAATTTTAGGACATGTCTTAAGCTTTTCCATAGCAGCTGCTAGCATGTTTCTTTTTGGAAGACACTTTAATTGAATCTTTATTGCTCTTTATATTTTCCGCATCTAATATACCTTAATGATTTTGGTGTATTCGCGGACATAATTTGTTGTTCAAAATACAGGAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCTATAACAGTCATCT</genome_strand>
        <mrna_strand>AGTACGTTGTCGCTGATCCAGAAATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E550508" ref_strand="-" ref_description="SGN-E550508 [TUS-6-C21]">
      <seq>caagtgatggcctctgggacgttgtaacgaatgaggaggctgtctcgatggttaagccgatccaagatcctgaagatgcagctaagaggatgatgcaggaagcatatcaaagaggcagtgcagatatcatccccattgtggttgtccgttttctgggtaaccaagagggttcctcccgaggtacctcagattaaaaagtaattgcctcttctaactcgtggtaataaaaggacaagaaaacccataggacgtaacgtaaatattgaatatagatagatttatgggtttatgatgtaaggaaaatctttagaattgagcattgtcaaagctttctctcaacttgtatgaagtgttcaagagtgaatctgggcataagtcaaatcccaaattattgatgttctatgtttaacatacagtagctttataatatatactgctgttttcttgtatcgcccattttattgcattttgattcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="20428" stop="21613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20728" g_stop="20762" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20869" g_stop="21313" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="480" r_length="445" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E550508" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20728" e_stop="20762"/>
          <exon e_start="20869" e_stop="21313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGATGGACTCTGGGACGTTGTAACGAATGAGGTTAATAATTCTTCCCTTTTTTCTTAGTTAGATATCGAATCCATCACCATAGTCTTACTTTAACTATCAAGTAGTTTATAGTCCATCATTACAAATAAATTTACAGGAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAG</genome_strand>
        <mrna_strand>CAAGTGATGGCCTCTGGGACGTTGTAACGAATGAG..........................................................................................................GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGATGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATATCATCCCCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGATTAAAAAGTAATTGCCTCTTCTAACTCGTGGTAATAAAAGGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTATGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAGCATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTATCGCCCATTTTATTGCATTTTGATTCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E224176" ref_strand="-" ref_description="SGN-E224176 [cLEL-19-O13]">
      <seq>tgcagataacatcaccattgtggttgtccgttttctgggtacccaagagggttcctcccgaggtacctcagcttaaaaagtaattaccacttctaactcgtggtaataaaacgacaagaaaacccataggacgtaacgtaaatattgaatatagatagatttctgggtctatgatgtaaggaaaatctttagaattgaacattgtcaaagctttctctcaacttgtatgaagtgttcaagagtgaatctgggcataagtcaaatcccaaattattgatgttctatgtttaacatacagtagctttataatatatactgctgttttcttgtaatccccattttattgcattttgattcaccagtgtataccattcaaaaaaaaaaaaaaactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="20652" stop="21622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20952" g_stop="21316" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="390"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E224176" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20952" e_stop="21316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGT</genome_strand>
        <mrna_strand>TGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTACCCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTCTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E224255" ref_strand="+" ref_description="SGN-E224255 [cLEL-19-O13]">
      <seq>tttttttttttttttttttttatacactggtgaatcaaaatgcaataaaatggggattacaagaaaacagcagtatatattataaagctactgtatgttaaacatagaacatcaataatttgggatttgacttatgcccagattcactcttgaacacttcatacaagttgagagaaagctttgacaatgttcaattctaaagattttccttacatcataaacccagaaatctatctatattcaatatttacgttacgtcctatgggttttcttgtcgttttattaccacgagttagaagtggtaattactttttaagctgaggtaccttgggaggaaccctcttggttacccagaaaacggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="100393" stop="20675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21339" g_stop="20975" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E224255" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21339" e_stop="20975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATATAACAAATGTTGTTATACACTGGTGAATCAAAATGCAATAAAATGGGGATTACAAGAAAACAGCAGTATATATTATAAAGCTACTGTATGTTAAACATAGAACATCAATAATTTGGGATTTGACTTATGCCCAGATTCACTCTTGAACACTTCATACAAGTTGAGAGAAAGCTTTGACAATGTTCAATTCTAAAGATTTTCCTTACATCATAAACCCAGAAATCTATCTATATTCAATATTTACGTTACGTCCTATGGGTTTTCTTGTCGTTTTATTACCACGAGTTAGAAGTGGTAATTACTTTTTAAGCTGAGGTACCTCGGGAGGAACCCTCTTGGTTACCCAGAAAACGGACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTATACACTGGTGAATCAAAATGCAATAAAATGGGGATTACAAGAAAACAGCAGTATATATTATAAAGCTACTGTATGTTAAACATAGAACATCAATAATTTGGGATTTGACTTATGCCCAGATTCACTCTTGAACACTTCATACAAGTTGAGAGAAAGCTTTGACAATGTTCAATTCTAAAGATTTTCCTTACATCATAAACCCAGAAATCTATCTATATTCAATATTTACGTTACGTCCTATGGGTTTTCTTGTCGTTTTATTACCACGAGTTAGAAGTGGTAATTACTTTTTAAGCTGAGGTACCTTGGGAGGAACCCTCTTGGTTACCCAGAAAACGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E371425" ref_strand="-" ref_description="SGN-E371425 [TUS-29-F12]">
      <seq>catcgtgaattccggtgagaaagaacaacgtcggagatggaggatttgaagaagcaatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaattgatattttgcttttttcctctttatgttgttagtgaggaggatcgtaactacgtgtatatatatctaattttgtttctctttttttgtatcaaaaagctattaaaaaaatagaaatttgtaatggataaattttgtagtgaattattaaaattttcttatattttgtttaatgatgaaatttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26896" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26596" g_stop="26559" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="94" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="25893" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="669" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="679"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E371425" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371425" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26596" e_stop="26559"/>
          <exon e_start="26467" e_stop="25893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTTATATTTTGTTTAATGATGAAATTTG</genome_strand>
        <mrna_strand>ATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTTATATTTTGTTTAATGATGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E280545" ref_strand="-" ref_description="SGN-E280545 [cLER-1-E6]">
      <seq>tcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaattgatattttgcttttttcctctttatgttgttagtgaggaggatcgtaactacgtgtatatatatctaattttgtttctctttttttgtatcaaaaagctattaaaaaaatagaaatttgtaatggataaattttgtagtgaattattaaaattttcttatattttgtttaatgatgaaatttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26782" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26577" g_stop="26559" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="25893" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="594" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="604"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E280545" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280545" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26577" e_stop="26559"/>
          <exon e_start="26467" e_stop="25893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTTATATTTTGTTTAATGATGAAATTTG</genome_strand>
        <mrna_strand>TCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTTATATTTTGTTTAATGATGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E710480" ref_strand="+" ref_description="SGN-E710480 [FA55CC06]">
      <seq>atcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaattgatattttgcttttttcctctttatgttgttagtgaggaggatcgtaactacgtgtatatatatctaattttgtttctctttttttgtatcaaaaagctattaaaaaaatagaaatttgtaatggataaattttgtagtgaattattaaaattttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26759" stop="25615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26459" g_stop="25918" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="574"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E710480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26459" e_stop="25918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTT</genome_strand>
        <mrna_strand>ATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E747287" ref_strand="+" ref_description="SGN-E747287 [GI|47104675]">
      <seq>aaaaaataaaaagcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaattgatattttgcttttttcctctttatgttgttagtgaggaggatcgtaactacgtgtatatatatctaattttgtttctctttttttgtatcaaaaagctattaaaaaaatagaaatttgtaatggataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27661" stop="25646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27361" g_stop="26559" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="803" r_length="803" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="25947" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="1324" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1325" polyA_stop="1345"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E747287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1324</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27361" e_stop="26559"/>
          <exon e_start="26467" e_stop="25947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAA</genome_strand>
        <mrna_strand>AAAAAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E215424" ref_strand="-" ref_description="SGN-E215424 [cLEL-20-K18]">
      <seq>tccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcgaagttgaccagaccacagcacaatgacggatggtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26952" stop="25778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26652" g_stop="26559" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26072" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="490" r_length="396" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E215424" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26652" e_stop="26559"/>
          <exon e_start="26467" e_stop="26072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGAT-GTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATA</genome_strand>
        <mrna_strand>TCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGAAGTTG-ACCAGACCACAGCACAATGACGGATGGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E230676" ref_strand="-" ref_description="SGN-E230676 [cLEL-35-G8]">
      <seq>atttcaccctcatgatcagccaaagtgtttcatcatcatctcttgacgtcggggggtaccagaccacagccaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26781" stop="25778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26587" g_stop="26559" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26072" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="420" r_length="394" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E230676" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230676" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26587" e_stop="26559"/>
          <exon e_start="26467" e_stop="26072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATA</genome_strand>
        <mrna_strand>ATTTCACC-CTC-AT-GATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGG-GGGGTACCAGACCACAGC-CAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E230907" ref_strand="-" ref_description="SGN-E230907 [cLEL-35-I20]">
      <seq>ctcaatcgatcagccaaagtgtttcatcatcatctcttacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26782" stop="25778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26578" g_stop="26559" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26072" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="415" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E230907" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230907" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26578" e_stop="26559"/>
          <exon e_start="26467" e_stop="26072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATA</genome_strand>
        <mrna_strand>CTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTT-ACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTACAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E218662" ref_strand="-" ref_description="SGN-E218662 [cLEL-18-N23]">
      <seq>tcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26782" stop="25778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26573" g_stop="26559" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26072" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="411" r_length="396" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E218662" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218662" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26573" e_stop="26559"/>
          <exon e_start="26467" e_stop="26072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATA</genome_strand>
        <mrna_strand>TCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E230606" ref_strand="+" ref_description="SGN-E230606 [cLEL-35-G8]">
      <seq>tttttttttttttttttaataattagagataataaatatatatataaaaaataattaaaacgatggaacgacaccgtatgatgcatcgacggtgatgagtgaatcgatttcagtttcagtacgtttagcgaatctccctttgattctgggccgagtctcagcataagcttttctagaagcatatcgaatcgtcttctcgaactttctattcttcctcttctctctgtacctcattacccttgcttctctgtctaaaccggaaactgcattcggtacaacgtcggcgccggcgccggcaatagcaccggaagatgagttcatacaaaagtgtttgatacatccgtcattgtgctgtggtctggtacaactccgacgtaagagatgatgatgaacatttggctgatcgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="25778" stop="26782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26072" g_stop="26469" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E230606" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26072" e_stop="26469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAATTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCATCACAAAAGTGTTTGATACATCCGTCATTGTGCTGTGGTCTGGTACAACTCCGACGTCAAGAGATGATGATGAAACCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCAT-ACAAAAGTGTTTGATACATCCGTCATTGTGCTGTGGTCTGGTACAACTCCGACGT-AAGAGATGATGATG-AACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E230403" ref_strand="+" ref_description="SGN-E230403 [cLEL-35-I20]">
      <seq>tttttttttttttttttaataattagagataataaatatatatataaaaaataattaaaacgatggaacgacaccgtatgatgcatcgacggtgatgagtgaatcgatttcagtttcagtacgtttagcgaatctccctttgattctgggccgagtctcagcataagcttttctagaagcatatcgaatcgtcttctcgaactttctattcttcctcttctctctgtacctcattacccttgcttctctgtctaaaccggaaactgcattcggtacaacgtcggcgccggcgccggcaatagcaccggaagatgagttcatcacaaaagtgtttgatacatccgtcattgtgctgtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="25778" stop="26731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26072" g_stop="26431" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E230403" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26072" e_stop="26431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAATTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCATCACAAAAGTGTTTGATACATCCGTCATTGTGCTGTGGTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCATCACAAAAGTGTTTGATACATCCGTCATTGTGCTGTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E215328" ref_strand="+" ref_description="SGN-E215328 [cLEL-20-K18]">
      <seq>tttttttttttttttttaataattagagataataaatatatatataaaaaataattaaaacgatggaacgacaccgtatgatgcatcgacggtgatgagtgaatcgatttcagtttcagtacgtttagcgaatctccctttgattctgggccgagtctcagcataagcttttctagaagcatatcgaatcgtcttctcgaactttctattcttcctcttctctctgtacctcattacccttgcttctctgtctaaaccggaaactgcattcggtacaacgtcggcgccggcgccggcaatagcaccggaagatgagttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="25778" stop="26692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26072" g_stop="26392" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E215328" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26072" e_stop="26392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAATTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E297824" ref_strand="+" ref_description="SGN-E297824 [cLET-38-B2]">
      <seq>ttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccataatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgatccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26739" stop="25779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26439" g_stop="26079" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E297824" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26439" e_stop="26079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAA</genome_strand>
        <mrna_strand>TTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCATAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGATCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E294686" ref_strand="+" ref_description="SGN-E294686 [cLET-22-P17]">
      <seq>ttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactgatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatcaccgtcgatgcatcatacggtgtcgttccatcgttttaattattttttatatatatatttattatctctaattattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="26739" stop="25779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26439" g_stop="26079" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E294686" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26439" e_stop="26079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAA</genome_strand>
        <mrna_strand>TTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTGATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E238016" ref_strand="+" ref_description="SGN-E238016 [cLED-18-D12]">
      <seq>gaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagtttccggtttagacagagaagcaagggtaatgaggtacagagagaagaggaagaatagaaagttcgagaagacgattcgatatgcttctagaaaagcttatgctgagactcggcccagaatcaaagggagattcgctaaacgtactgaaactgaaatcgattcactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27136" stop="25865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26836" g_stop="26559" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26165" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="581" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E238016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26836" e_stop="26559"/>
          <exon e_start="26467" e_stop="26165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATC</genome_strand>
        <mrna_strand>GAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E265121" ref_strand="+" ref_description="SGN-E265121 [cLEI-2-E11]">
      <seq>gacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgttaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatgcagttttcggtttagacagataatcaagggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27150" stop="26003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26850" g_stop="26559" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26303" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="458" r_length="166" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E265121" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26850" e_stop="26559"/>
          <exon e_start="26467" e_stop="26303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTG-TACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATG</genome_strand>
        <mrna_strand>GACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTTCGGTTTAGACAGATAATCAAGGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E296686" ref_strand="+" ref_description="SGN-E296686 [cLET-39-D22]">
      <seq>cgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatcttccggtgctattgccggcgccggcgccgacgttgtaccgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27151" stop="26038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26851" g_stop="26559" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26338" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E296686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26851" e_stop="26559"/>
          <exon e_start="26467" e_stop="26338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATG</genome_strand>
        <mrna_strand>CGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E269235" ref_strand="+" ref_description="SGN-E269235 [cLEI-16-J22]">
      <seq>aaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27272" stop="26082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26972" g_stop="26559" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26382" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="500" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E269235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26972" e_stop="26559"/>
          <exon e_start="26467" e_stop="26382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATC</genome_strand>
        <mrna_strand>AAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E341491" ref_strand="+" ref_description="SGN-E341491 [cTOE-23-P17]">
      <seq>tactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacctctcaatcgatcagccaaagtgtttcatcatcatctcttgacgtcggagttgtaccagaccacagcacaatgacggatgtatcaaacacttttgtgatgaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27221" stop="26083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26921" g_stop="26559" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26467" g_stop="26383" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="448" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E341491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26921" e_stop="26559"/>
          <exon e_start="26467" e_stop="26383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGTGTATGCATCTGCATCTGCATTACTCTATTCAATTTCCTTCAGTTTATGTGAATCGATTACCGATCTCATTTTGATTTTGTTTAACTAACAGGTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCAT</genome_strand>
        <mrna_strand>TACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT...........................................................................................GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E344694" ref_strand="+" ref_description="SGN-E344694 [cTOF-14-N20]">
      <seq>aatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatctaaaccttatatgtacaatttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27646" stop="26280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27346" g_stop="26580" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E344694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27346" e_stop="26580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACC</genome_strand>
        <mrna_strand>AATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E228107" ref_strand="+" ref_description="SGN-E228107 [cLED-2-N21]">
      <seq>gaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacatacgaactcgatttcactggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27425" stop="26304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27125" g_stop="26604" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E228107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27125" e_stop="26604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCT</genome_strand>
        <mrna_strand>GAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E348923" ref_strand="+" ref_description="SGN-E348923 [cTOF-29-A24]">
      <seq>tcaatttttgattctctcacttaacacagaaagaaaaaataatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacgggagttgtaccagtacagaacaacaacgaaactactcatttacccggtcccagtcgttgatggattccctacatacgaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27644" stop="26318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27344" g_stop="26618" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E348923" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27344" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGAC-GGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGT-CCAGTCGTTGATGGATTCCCTACATACGAACTCG</genome_strand>
        <mrna_strand>TCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAA-TAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCT-ACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCCAGTCGTTGATGGATTCCCTACATACGAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E339868" ref_strand="+" ref_description="SGN-E339868 [cTOF-3-E10]">
      <seq>aaaagcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27653" stop="26326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27353" g_stop="26626" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E339868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27353" e_stop="26626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATA</genome_strand>
        <mrna_strand>AAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E240259" ref_strand="+" ref_description="SGN-E240259 [cLED-25-P17]">
      <seq>gaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaacaacaacgaaactactcatttacccggtccagtcgttgatggattccctacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27425" stop="26326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27125" g_stop="26626" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E240259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27125" e_stop="26626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATA</genome_strand>
        <mrna_strand>GAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E316049" ref_strand="+" ref_description="SGN-E316049 [cTOA-23-K22]">
      <seq>aatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaacacatattcttcatcatncacagcatcaacacaaccattacagctcccgacgagttgtaccagtacagaaacacaacgaaactactcatttacccggtccagtcgntgatggattcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27642" stop="26330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27342" g_stop="26630" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E316049" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27342" e_stop="26630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTA</genome_strand>
        <mrna_strand>AATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAA-CACATATTCTTCATCATNCACAGCATCAACACAACCATTACAGCTCCCGACGAGTTGTACCAGTACAGAAACACAACGAAACTACTCATTTACCCGGTCCAGTCGNTGATGGATTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E307908" ref_strand="+" ref_description="SGN-E307908 [cLEY-20-H3]">
      <seq>atttctctgcttaggatgtgactgctaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttacctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcactgcggtggtgatacctgatgccgatgctgttgatgatgagaagtactatgatagtactaatgagaatccttcttaaccagacgaagaagctgtagcagcgttgtggatacttccgacgcctagagaaggaactgatcactataaatctgctgattacttgtataatgatgtggattcatatttagatgtggatctaatgtcatgtgagcaaaaaccacatattcttcatcatcgacagcatcaacacaaccattgcagctacgacggagttgtaccagtacagaacaacaacgatactactcatttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27504" stop="26356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27204" g_stop="26656" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E307908" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27204" e_stop="26656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACC-GATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACC</genome_strand>
        <mrna_strand>ATTTCTCTGCTTAGGATGTGACTGCTAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTACCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACTGCGGTGGTGATACCTGATGCCGATGCTGTTGATGATGAGAAGTACTATGATAGTACTAATGAGAATCCTTCTTAACCAGACGAAGAAGCTGTAGCAGCGTTGTGGATACTTCCGACGCCTAGAGAAGGAACTGATCACTATAAATCTGCTGATTACTTGTATAATGATGTGGATTCATATTTAGATGTGGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCGACAGCATCAACACAACCATTGCAGCTACGACGGAGTTGTACCAGTACAGAACAACAACGATACTACTCATTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E316228" ref_strand="+" ref_description="SGN-E316228 [cTOA-23-M16]">
      <seq>aatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatattcttcatcatcaacagcatcaacacaaccattacagctccgacggagttgtaccagtacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27642" stop="26380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27342" g_stop="26680" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E316228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27342" e_stop="26680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAA</genome_strand>
        <mrna_strand>AATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E208266" ref_strand="+" ref_description="SGN-E208266 [cLEC-37-D4]">
      <seq>acaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgagcaaaaaccacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27463" stop="26443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27163" g_stop="26743" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E208266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27163" e_stop="26743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATAT</genome_strand>
        <mrna_strand>ACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E249385" ref_strand="+" ref_description="SGN-E249385 [cLEF-50-D7]">
      <seq>aaaagcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27653" stop="26457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27353" g_stop="26757" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E249385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27353" e_stop="26757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAG</genome_strand>
        <mrna_strand>AAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E249063" ref_strand="+" ref_description="SGN-E249063 [cLEF-49-O22]">
      <seq>aaaataaaaagccaaatcaatttttgattctctcacttaaccaccagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaaccggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgccagcgaacaagttagcgtcacgtcacgccccgtgtctgggtttgtgaagtgtgtgagccagcctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatatagatctaatgtcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27659" stop="26458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27359" g_stop="26758" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E249063" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27359" e_stop="26758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAAG-CAAATCAATTTTTGATTCTCTCACTTAA-CA-CAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAA-CGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACG-CAGCGAACAAGTTAGCGTCACGTCACG-CGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAG-CTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGA</genome_strand>
        <mrna_strand>AAAATAAAAAGCCAAATCAATTTTTGATTCTCTCACTTAACCACCAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACCGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCCAGCGAACAAGTTAGCGTCACGTCACGCCCCGTGTCTGGGTTTGTGAAGTGTGTGAGCCAGCCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E324853" ref_strand="+" ref_description="SGN-E324853 [cTOC-11-M10]">
      <seq>aactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttggttaatgatatggattcatatttagatatagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27607" stop="26470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27307" g_stop="26770" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E324853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27307" e_stop="26770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCT</genome_strand>
        <mrna_strand>AACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGGTTAATGATATGGATTCATATTTAGATATAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E299478" ref_strand="+" ref_description="SGN-E299478 [cLET-43-F18]">
      <seq>aaataaaaagcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatacttccgacgccgaaagaaggaactgatcagtataaatctgctgattacttgtttaatgatatggattcatatttagatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27658" stop="26475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27358" g_stop="26775" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E299478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27358" e_stop="26775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATA</genome_strand>
        <mrna_strand>AAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E287413" ref_strand="+" ref_description="SGN-E287413 [cLES-15-O24]">
      <seq>caaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaatccttctcaaccagaggaagaagctgaagcagcgtcgtggatactttcgacgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27648" stop="26544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27348" g_stop="26844" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E287413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27348" e_stop="26844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCG</genome_strand>
        <mrna_strand>CAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTTCGACGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E292731" ref_strand="+" ref_description="SGN-E292731 [cLET-11-L21]">
      <seq>aaataaaaagcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagtactttgatagtactaatgagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27658" stop="26598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27358" g_stop="26898" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E292731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27358" e_stop="26898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAAT</genome_strand>
        <mrna_strand>AAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E247201" ref_strand="+" ref_description="SGN-E247201 [cLEF-46-K5]">
      <seq>tcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatgccgatgctgttgatgatgagaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27551" stop="26620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27251" g_stop="26920" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E247201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27251" e_stop="26920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTA</genome_strand>
        <mrna_strand>TCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E250590" ref_strand="+" ref_description="SGN-E250590 [cLEG-7-K11]">
      <seq>catttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcacgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtccccatgagcgttttccggtagtttcgttctatgatttcgccgtcgcgaaatctcacggcggtggtgataccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27505" stop="26645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27205" g_stop="26945" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E250590" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27205" e_stop="26945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATG</genome_strand>
        <mrna_strand>CATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCACGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCCCCATGAGCGTTTTCCGGTAGTTTCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E307809" ref_strand="+" ref_description="SGN-E307809 [cLEY-20-I3]">
      <seq>atttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgcgttacgtgtgaccgtgatattcattcagcaaatccgttagctcgtcgccatgagcgttttccggtagttccgttctatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27504" stop="26684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27204" g_stop="26984" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E307809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27204" e_stop="26984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATT</genome_strand>
        <mrna_strand>ATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E729285" ref_strand="+" ref_description="SGN-E729285 [LA20CD02]">
      <seq>agcaaatcaatttttgattctctcacttaacacagaaagaaaaaactaatcgaaataatgggaacggagaattggagtttaacggcgaagttatgtgactcatgcaaaacgtcgccggcgacggtgttctgccgggcagattcagcatttctctgcttaggatgtgactgcaaaatccacgcagcgaacaagttagcgtcacgtcacgcgcgtgtctgggtttgtgaagtgtgtgagcaagctccggcgagtgtcacgtgtaaagcggatgccgctgctctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="27650" stop="26766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27350" g_stop="27066" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E729285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27350" e_stop="27066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGC</genome_strand>
        <mrna_strand>AGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E687950" ref_strand="+" ref_description="SGN-E687950 [T3_tus_81_M03]">
      <seq>aaaaaaaaaattgtcaaaggatttgatatgatggatagatcgtttcttcgtaaactagggagcagtctccgaatcaattaatcgagctccgatacgaatattcacgcctttttgagctcagtgactttgttcatgattttggtccctaaaaacttcatctttcaacttctcatcagctaattcttcatcctccatctccaatttcttctcaattttacttccattttcatctccaaacgaagagcttttgctcgaaattggcgtagctaaaaaagttggattcaaatctccagccattatcactacaattttctcttcataaatcggcacaaatttaactaaatctccggaagatttctcaccggcgccggattccagatcatcggtactatcgctagtctcgccggagcgttttaaataaaaacaagctaaaattacaagtgcaaatgctattaaccctagcatcgctgcaacaccgatgaataggtacgccgccggtgaatgccacggcgatctctggaaactctccaccggcgaaaaagtagttttcaccgttgattcaactggttcaattgttgatggagtagcaatgaaggtactcacagttctcatttttattttttttggcttaaatattttttttcttttttcttagtttgagaaatgaataaatggtgtatatgtgtatttataattagtttgtaatgtaaaaagggaataaatttttaagagggaataaacaatattttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="36701" stop="35349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36401" g_stop="35649" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="782"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E687950" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36401" e_stop="35649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTTTTCTTAGTTTGAGAAATGAATAAATGGTGTATATGTGTATTTATAATTAGTTTGTAATGTAAAAAGGGAATAAATTTTTAAGAGGGAATAAACAATATTTTATAA</genome_strand>
        <mrna_strand>AAAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAAAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTTTTCTTAGTTTGAGAAATGAATAAATGGTGTATATGTGTATTTATAATTAGTTTGTAATGTAAAAAGGGAATAAATTTTTAAGAGGGAATAAACAATATTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E328475" ref_strand="+" ref_description="SGN-E328475 [cTOC-21-P6]">
      <seq>aaaaaaaaattgtcaaaggatttgatatgatggatagatcgtttcttcgtaaactagggagcagtctccgaatcaattaatcgagctccgatacgaatattcacgcctttttgagctcagtgactttgttcatgattttggtccctaaaaacttcatctttcaacttctcatcagctaattcttcatcctccatctccaatttcttctcaattttacttccattttcatctccaaacgaagagcttttgctcgaaattggcgtagctaaaaaagttggattcaaatctccagccattatcactacaattttctcttcataaatcggcacaaatttaactaaatctccggaagatttctcaccggcgccggattccagatcatcggtactatcgctagtctcgccggagcgttttaaataagaacaagctaaaattacaagtgcaaatgctattaaccctagcatcgctgcaacaccgatgaataggtacgccgccggtgaatgccacggcgatctctggaaactctccaccggcgaaaaagtagttttcaccgttgattcaactggttcaattgttgatggagtagncatgaaggtactcacagttctcatttttatttttttgggctaaatattttttttcttttttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="36700" stop="35451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36400" g_stop="35749" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E328475" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36400" e_stop="35749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTTTTCTT</genome_strand>
        <mrna_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGNCATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTGGGC-TAAATATTTTTTTTCTTTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E328663" ref_strand="+" ref_description="SGN-E328663 [cTOC-23-G1]">
      <seq>aaaaaaaaattgtcaaaggatttgatatgatggatagatcgtttcttcgtaaactagggagcagtctccgaatcaattaatcgagctccgatacgaatattcacgcctttttgagctcagtgactttgttcatgattttggtccctaaaaacttcatctttcaacttctcatcagctaattcttcatcctccatctccaatttcttctcaattttacttccattttcatctccaaacgaagagcttttgctcgaaattggcgtagctaaaaaagttggattcaaatctccagccattatcactacaattttctcttcataaatcggcacaaatttaactaaatctccggaagatttctcaccggcgccggattccagatcatcggtactatcgctagtctcgccggagcgttttaaataagaacaagctaaaattacaagtgcaaatgctattaaccctagcatcgctgcaacaccgatgaataggtacgccgccggtgaatgccacggcgatctctggaaactctccaccggcgaaaaagtagttttcaccgttgattcaactggttcaattgttgatggagtagcaatgaaggtactcacagttctcatttttattttttttggcttaaatattttttttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="36700" stop="35454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36400" g_stop="35754" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E328663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36400" e_stop="35754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTT</genome_strand>
        <mrna_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E328739" ref_strand="+" ref_description="SGN-E328739 [cTOC-23-F19]">
      <seq>aaaaaaaaattgtcaaaggatttgatatgatggatagatcgtttcttcgtaaactagggagcagtctccgaatcaattaatcgagctccgatacgaatattcacgcctttttgagctcagtgactttgttcatgattttggtccctaaaaacttcatctttcaacttctcatcagctaattcttcatcctccatctccaatttcttctcaattttacttccattttcatctccaaacgaagagcttttgctcgaaattggcgtagctaaaaaagttggattcaaatctccagccattatcactacaattttctcttcataaatcggcacaaatttaactaaatctccggaagatttctcaccggcgccggattccagatcatcggtactatcgctagtctcgccggagcgttttaaataagaacaagctaaaattacaagtgcaaatgctattaaccctagcatcgctgcaacaccgatgaataggtacgccgccggtgaatgccacggcgatctctggaaactctccaccggcgaagaagtagttttcaccgttgattcaactggttcaattgttgatggagtagcaatgaaggtactcacagttctcatttgtattttttttggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="36700" stop="35472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36400" g_stop="35772" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E328739" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36400" e_stop="35772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTT</genome_strand>
        <mrna_strand>AAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAGAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTGTATTTTTTTTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E311114" ref_strand="+" ref_description="SGN-E311114 [cLEZ-16-K14]">
      <seq>tcaaacaaaaattacactctccaaaatgtcaaaattgaaaatccaaactaaaatcggatttttaaatatgaaaaaaaaaattgtcaaaggatttgatatgatggatagatcgtttcttcgtaaactagggagcagtctccgaatcaattaatcgagctccgatacgaatattcacgcctttttgagctcagtgactttgttcatgattttggtccctaaaaacttcatctttcaacttctcatcagctaattcttcatcctccatctccaatttcttctcaattttacttccattttcatctccaaacgaagagcttttgctcgaaattggcgtagctaaaaaagttggattcaaatctccagccattatcactacaattttctcttcataaatcggcacaaatttaactaaatctccggaagatttctcaccggcgccggattccagatcatcggtactatcgctagtctcgccggagcgttttaaataagaacaagctaaaattacaagtgcaaatgctattaaccctagcatcgctgcaacaccgatgaataggtacgccgccggtgaatgccacggcgatctctggaaactctccaccggcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="36771" stop="35562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36471" g_stop="35862" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E311114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36471" e_stop="35862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAAAAATTACACTCTCCAAAATGTCAAAATTGAAAATCCAAACTAAAATCGGATTTTTAAATATGAAAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAA</genome_strand>
        <mrna_strand>TCAAACAAAAATTACACTCTCCAAAATGTCAAAATTGAAAATCCAAACTAAAATCGGATTTTTAAATATGAAAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E306635" ref_strand="+" ref_description="SGN-E306635 [cLEY-19-M14]">
      <seq>ttttttcttttttgcacaattgtggagaaacaattttgaattttaaaaaataatcaaaattataatatttctatatcctagaaggaaaataatattactttttcaatacgtgagtttaaaaataattaccatatatatttttaaatattttaaattatctgcaccatagtaattatacttacctattactagaatatttttcttcagtttcttcttccgatttttttctcaaagtaaaaaggcacaaatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctgcgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgattaccttgcttccttgatggactatactcccactattcctgatgaatcggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41211" stop="42379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41511" g_stop="41935" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="490" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E306635" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41511" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTTTTTGCACAATTGTGGAGAAACAATTTTGAATTTTAAAAAATAATCAAAATTATAATATTTCTATATCCTAGAAGGAAAATAATATTACTTTTTCAATATGTGAGTTTAAAAATAATTTTTATATATATTTTTAAATATTTTAAATTATCGTAACCATAGTAATTTTACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT</genome_strand>
        <mrna_strand>TTTTTTCTTTTTTGCACAATTGTGGAGAAACAATTTTGAATTTTAAAAAATAATCAAAATTATAATATTTCTATATCCTAGAAGGAAAATAATATTACTTTTTCAATACGTGAGTTTAAAAATAATTACCATATATATTTTTAAATATTTTAAATTATCTGCACCATAGTAATTATACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTGCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTACCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATCGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E723912" ref_strand="+" ref_description="SGN-E723912 [FC22BG02]">
      <seq>aatcggccgaattgaaccatagtaattttacttacctattactagaatatttttcttcagtttcttcttccgatttttttctcaaagtaaaaaggcacaaatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgtttaaatttgctttgaacttgttgatgaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41367" stop="45467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41675" g_stop="41935" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="278" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="343" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="406" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="515" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45167" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="868" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E723912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41675" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTAATTTTACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGAATGTGC</genome_strand>
        <mrna_strand>CATAGTAATTTTACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGAATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E266993" ref_strand="+" ref_description="SGN-E266993 [cLEI-7-H24]">
      <seq>acctattactaaaatatttagctacagtgacttcttccgatttttttctcaaagtaaaaaggcacaaatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgttacgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgtacgattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41391" stop="42379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41691" g_stop="41935" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="310" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E266993" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41691" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT</genome_strand>
        <mrna_strand>ACCTATTACTAAAATATTTAGCTACAGTGACTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTACGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTACGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E723362" ref_strand="+" ref_description="SGN-E723362 [FC20BA12]">
      <seq>gcttccgatttttttccctagtagaaaggcacaaatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctacccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgtttaaatttgctttgaacttgttgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41424" stop="45462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41723" g_stop="41935" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="277" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="340" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="398" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="449" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45164" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="799" r_length="350" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E723362" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41723" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGAATG</genome_strand>
        <mrna_strand>GCTTCCGATTTTTTTC-CCTAGTAGAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTACCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E336615" ref_strand="+" ref_description="SGN-E336615 [cTOE-4-B23]">
      <seq>tcaaagtaaaaaggcacaaatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41439" stop="45152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41739" g_stop="41935" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="262" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="325" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="434" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="44852" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="472" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E336615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41739" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="44852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGA</genome_strand>
        <mrna_strand>TCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E304254" ref_strand="+" ref_description="SGN-E304254 [cLEX-6-L4]">
      <seq>aatcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagaggtaatcattctttgctggcctatcaaaaaataataaaaagttattcatcattataatttcatcttatttattctataaatagtctgctgtataatgcttttgaccaatcgagtggtccatccttgtagaacctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41457" stop="45006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41757" g_stop="41935" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44706" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="552" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E304254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41757" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTC</genome_strand>
        <mrna_strand>AATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E715695" ref_strand="+" ref_description="SGN-E715695 [FB15AA10]">
      <seq>atcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgtttaaatttgctttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41458" stop="45452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41758" g_stop="41935" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="243" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="306" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="364" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="415" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45152" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="753" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E715695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41758" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACT</genome_strand>
        <mrna_strand>ATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E347925" ref_strand="+" ref_description="SGN-E347925 [cTOF-31-B5]">
      <seq>tcttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41459" stop="45434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41759" g_stop="41935" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="305" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="363" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="414" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45134" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="734" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E347925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41759" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGT</genome_strand>
        <mrna_strand>TCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E305918" ref_strand="+" ref_description="SGN-E305918 [cLEY-17-H6]">
      <seq>ttccccaattttcctccggcgaaattgaaactccgaccaccgccgatcctccgttgactctgtttcgacggtgaagatgaaccaaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41461" stop="45337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41761" g_stop="41935" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="303" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="361" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45037" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="635" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E305918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41761" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTA</genome_strand>
        <mrna_strand>TTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E354136" ref_strand="+" ref_description="SGN-E354136 [cTOS-16-F18]">
      <seq>caaagtcaaggtcaacaaacaagtgaaggaagacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataaggttggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgtttaaatttgctttgaacttgttgatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41543" stop="45462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="41935" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="158" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="221" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="279" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="330" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45161" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="677" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="687"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E354136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGA</genome_strand>
        <mrna_strand>CAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E323923" ref_strand="+" ref_description="SGN-E323923 [cTOC-3-A4]">
      <seq>agacacgaggatgatgctgttctagccgatttccttgcttccttgatggactatactcccactattcctgatgaattggtggagcattacttgggtaaaagtggatttcaatgtcctgatgttcgattaataagggtggtggcagttgctactcagaagtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="41573" stop="45337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41873" g_stop="41935" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="42079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="128" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43195" g_stop="43257" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="191" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="249" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="300" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44815" g_stop="45037" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="523" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E323923" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41873" e_stop="41935"/>
          <exon e_start="42015" e_stop="42079"/>
          <exon e_start="43195" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACTGTGAGCTACTTTTTGCCCTTTTTCTTACTGAAGAGATCAATTTTATGTTTTATTTATGTAGGTTAACGCTTTTGATCAGATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATTGTATGTATTTTCTTCCCATTCTTATGTTGATGTTTCTGCAATTTAGCCTGCTTAGATTAGTTATAGAAAAATTGTTTGGATTGCTCATAAGGAAGATATGATTTTCGTGTGTTTATCTAGAACTATTTTCACTAGGTTTATCCTCTGTCTTGAGCTAACCGTAGTCTTTAAACTCGAATACGATGAACGCGCTCCTCAACCTACGTTTATTTTGCTTGGCGTAGCGAAAGCTCTACACTTTTGCCAAGTGAGCTAAGCCCTGGGGGTTCAAAGGGAGATATTATGTTACTGCAGCAAACAAATAAATTGGGCAAAGGTGCCCATATAATGATGTAAAATCCAGCTTGGGAGGATGTCCTCCCAAGATATTTCCTTCAACGAAGTAATAGAAAACTTAGCTGAATTATGTGCTAGTTTTGTTTAGACTTCTCGGAATATGAACAAAGTCTACATGATCAAGCAAGCTCTTAGCTTCCAAATGTCTTCACAAGTCACCTCTATCTCCCATGAGGTAGTTAACTTTTTCCTGAATCATAATCAATAACACTCTTTGCTTCCAATAGGATTCTCACATCCTTCCAATTGTTCCTGATTGTACGTTCAAGAGCCACTCTTAAAGCAAGTGCTTCAACAGTCATAGCTTTTCCCGCAAACTGGATTGGGGAAACATGGGCATGAATCAGTTTTCCAAGGCTTTCCAGAGCTGCAACACCAATATTTGCCAGTCCAGTATCCACCTGTAAACCTGCATCAGTAAACAATAATATAACATCTTGGTGGGTTGTTGGTGGAGCCGCAAGGCAATACCCATTTTTATGAAAATTAGATGAGCAATTAGCTGAATATCTTTATACTCGTAGCAATCAAACAGTGACTAAGCGGCAGTATTCTCTAGTTCCGTTTTTGTTTTGATCGTTTTCTATTTATCTGGTTTAGCAGTAAATTCAAGTAAAATTTATATATCTGTGAATTGGATTGGTATTTACCTTTTTACAAGTTGTAAATTTTAATATTGTAGCATTTGATGTTTTGTTTGACAGTGATGGCTGGTTTATCTTATGTTATCAGTTTTTAATACTGTGTTGTTGTATTGAGTTTTTCCTTTGGATATGCAGAATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTA</genome_strand>
        <mrna_strand>AGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT...............................................................................ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGGTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E714391" ref_strand="+" ref_description="SGN-E714391 [FB11BC07]">
      <seq>gtttattgcagatgtggctactgatgctctccaacattgcaaggcaaggcagtcaactattgtcaaggacaagagagataagcagcaaaaggacaaacgccttaccttgacaatggatgatctttcaaaatctctacgagagtatggtgttaacgtcaaacatcaagactactttgctgatagcccgtctgccgggttagatcctgcttcaagagaggaatgatgtaatgcctgctaacaaatctctgtgatcacataaatctgatggttttaggtcattgcgttgttgtcatcctcttgatttctcaaaagctatatatctgttggaggatacaactcttgactactatgtatctctatacttaccaatgttaactgtagttgccaccattgatagatttctcgtttcgatattcctttcatggtagcaatgagggtgatgttgataactggtttgaatgtttaaatttgctttgaacttgttgatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="42925" stop="45462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43225" g_stop="43257" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44400" g_stop="44457" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="91" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44520" g_stop="44570" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="142" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44815" g_stop="45161" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="489" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="499"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E714391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43225" e_stop="43257"/>
          <exon e_start="44400" e_stop="44457"/>
          <exon e_start="44520" e_stop="44570"/>
          <exon e_start="44815" e_stop="45161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGCAGATGTGGCTACTGATGCTCTCCAGTATGTTTCTTAATTATTTTATTTTTCTTGAATTCTGTTTCCTCCTCCATCTTATGTTAAGTATGCTGCTAATTCTTCGGCATATTGCTCATCGATTGTCCCCTACTCTTGAGGCTTCAATGCAATTGTTGCCTGTCTAGGTGTTTGTCATTGTATGATCCTTCCAACTTTTAAGTGTTCAAGTTGTTCTCCTCCCCCAAACCTTAAAAAAACTCTTTTTGGTTCGTCTCTAATGAATTAGAAACATTAAGTTGGTAATTTTAGAATCCAAGCCTGTTATATTTTTAAAGACTGCCGACCCTAACTTGACTACACTACCAAAAATACAACACCTGAAATTCTCTATTGTTAGCGCAATAATACTACTACCTCAGGAGATTATTGTGTCTGTGACACTCCAAAACCTTAGAAAAGAGACAAAGAAACAGAAAAATACAATATAAAGAAACTAAGATATGACTTGAGTAGACATGTAGAAAGACCTTGTTTCAGAATATATGATTACAAATAACAAAGCATCCAACTTTCTCTGAACTTCCTTTCTTAATGTTTCCAATGGATTGTTATTTTCCTAATGCTTCTACTGGATTGTGGTAGATCTTCTCAACTGTGACAAATCAGTTGTGTTTTGTTTCGTTATCGACTCAAGATTTTGTGAATGCCTCACTTTACTCACTATTTTGCCTTCACTAGTCGTAATGAAAGTAAAACTCATGAAATGCTGTGAGTCTTTTGAGGATAGATTATGGCTTTATCATCGGAAGAAAGAATAAGAGTTTATGAATGGTCTCTTATGTATCCTTCATGTTTAGAAAGAAATGGATATTTATGAAACGGGCCATTCCAATAGAGAAACAACATAATGCCAGTGGTTGAAAGCAGGCAGGTCGATGAAAGTTAGGATATATCAGGAGCAAGGGGTATCTCCATTGGTATTCTGTGTAGAGACTAGAAATATGGTTGAGACAACAAGATGGCAGTGGTTGAAGGAAGGAAAGTTGATGACTTGTGGGTAGACCAGGATAAAGACACCCTCATTTTTTGTGTTGAGACAAAATATAGTTGAATTTTGAAATTCTTGTTAATGTCTTGGAAACCGAGCTTATATTAGATTAACTTTCTTATTTTTCATGGTAATGCAGACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAGGTGCTTCACTTTTTTCTCTTTTCATTTTCTTATGTTTATTGGTTCTAACTCTGTTTTAGCAGGACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTCTTGTTTCTTCTTCTCCAAAAGGCTGTTCTTGCGTTGCCAATATTTTTATCACTTCAGCGATACTTTTTGCATATGAGTGTTCTCCGTAACCTTTGATTTGCATTGCAGTATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGA</genome_strand>
        <mrna_strand>GTTTATTGCAGATGTGGCTACTGATGCTCTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG..............................................................GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG....................................................................................................................................................................................................................................................TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E548350" ref_strand="-" ref_description="SGN-E548350 [TUS-60-G7]">
      <seq>tgtcgagtatcttaaggatcccaaagggttccttacttaccttggtctcaaggttaaaagggatttcatgtgcttgtattgcaactacagatgtctacctttcagcagtttagaagcagttcggaagcatatggaagcaaagaatcattgcagagtgcattatggtgatggtgatgatgatgaagaagctgaattagaagagttttatgactatagcagcagctttgttgatgaatctgggaaacagctcatttcatcggatgacacgggcaacagtgtggaacttggaagtggtggatctgagctcataataacaagaagaaataatgatggaagatctgttaggactcttggatcaagagagtttttgcgttactaccgacagaaactgaggcctacacggaccaatgatgtggctataagtgctgcattagctgcaaggtaccgaagcatgggtcttgcaactgtgcagtcaagagagcaaatggttaagttgaaggtgttgagagccatgaacaagtctggtgtggagataatgcgcagtaagattggcatgaaaagcaacgtcattcgtaacctccctaagaacataccatattagtcctttcaatagtaatattagccttctaagagattgttttggtgtttctgttattccaacttgtgtaattcctcatactttataactttttggtttgtattgtcatatagattgtttggaagtgacttttatatctaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="51904" stop="50242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51604" g_stop="51553" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51552" i_stop="51471" i_length="82">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51470" g_stop="51301" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="222" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51300" i_stop="51150" i_length="151">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51149" g_stop="50931" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50930" i_stop="50839" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50838" g_stop="50543" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="737" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="757"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E548350" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548350" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51604" e_stop="51553"/>
          <exon e_start="51470" e_stop="51301"/>
          <exon e_start="51149" e_stop="50931"/>
          <exon e_start="50838" e_stop="50543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAGGTAGAATATGTGCTTCCTCTAGACCTTTTTCCAGCATTAACCATTTCCTGTGTTCACAATCTTTTTCTTTTTTCTCGTACAGGTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAGGTATAATTTCTAACATGATTGCTTTCAATGTAATTTTGGTAGGATGAGTGTAGTATATTCTTTTCAAGAATTTTTCTTAAAATAATTTAGGTAGGATGTGTATAGTGAAGCTCCGTACTGTTATTGCTTCTGAGGTTCTCTTCGGTTGTAGCTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAGGTATGTATTAACTTGTTCAAAAGTGTCCATTTCATCACCTTCCTCCATCTTAAACCGTCATTTGAGCAAAACGCCCTTCCCTTCCCTTCCAGGTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</genome_strand>
        <mrna_strand>TGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAG..................................................................................GTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAG.......................................................................................................................................................CTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAG............................................................................................GTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E733700" ref_strand="+" ref_description="SGN-E733700 [LB10CH03]">
      <seq>gggttccttacttaccttggtctcaaggttaaaagggatttcatgtgcttgtattgcaactacagatgtctacctttcagcagtttagaagcagttcggaagcatatggaagcaaagaatcattgcagagtgcattatggtgatggtgatgatgatgaagaagctgaattagaagagttttatgactatagcagcagctttgttgatgaatctgggaaacagctcatttcatcggatgacacgggcaacagtgtggaacttggaagtggtggatctgagctcataataacaagaagaaataatgatggaagatctgttaggactcttggatcaagagagtttttgcgttactaccgacagaaactgaggcctacacggaccaatgatgtggctataagtgctgcattagctgcaaggtaccgaagcatgggtcttgcaactgtgcagtcaagagagcaaatggttaagttgaaggtgttgagagccatgaacaagtctggtgtggagataatgcgcagtaagattggcatgaaaagcaacgtcattcgtaacctccctaagaacataccatattagtcctttcaatagtaatattagccttctaagagattgttttggtgtttctgttattccaacttgtgtaattcctcatactttataactttttggtttgtattgtcatatagattgtttggaagtgacttttatatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="51782" stop="50242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51579" g_stop="51553" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51552" i_stop="51471" i_length="82">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51470" g_stop="51301" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="197" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51300" i_stop="51150" i_length="151">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51149" g_stop="50931" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="416" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50930" i_stop="50839" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50838" g_stop="50543" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="712" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="727"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E733700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51579" e_stop="51553"/>
          <exon e_start="51470" e_stop="51301"/>
          <exon e_start="51149" e_stop="50931"/>
          <exon e_start="50838" e_stop="50543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCCTTACTTACCTTGGTCTCAAGGTAGAATATGTGCTTCCTCTAGACCTTTTTCCAGCATTAACCATTTCCTGTGTTCACAATCTTTTTCTTTTTTCTCGTACAGGTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAGGTATAATTTCTAACATGATTGCTTTCAATGTAATTTTGGTAGGATGAGTGTAGTATATTCTTTTCAAGAATTTTTCTTAAAATAATTTAGGTAGGATGTGTATAGTGAAGCTCCGTACTGTTATTGCTTCTGAGGTTCTCTTCGGTTGTAGCTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAGGTATGTATTAACTTGTTCAAAAGTGTCCATTTCATCACCTTCCTCCATCTTAAACCGTCATTTGAGCAAAACGCCCTTCCCTTCCCTTCCAGGTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</genome_strand>
        <mrna_strand>GGGTTCCTTACTTACCTTGGTCTCAAG..................................................................................GTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAG.......................................................................................................................................................CTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAG............................................................................................GTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E716827" ref_strand="+" ref_description="SGN-E716827 [FB18AE12]">
      <seq>gtggaacttggaagtggtggatctgagctcataataacaagaagaaataatgatggaagatctgttaggactcttggatcaagagagtttttgcgttactaccgacagaaactgaggcctacacggaccaatgatgtggctataagtgctgcattagctgcaaggtaccgaagcatgggtcttgcaactgtgcagtcaagagagcaaatggttaagttgaaggtgttgagagccatgaacaagtctggtgtggagataatgcgcagtaagattggcatgaaaagcaacgtcattcgtaacctccctaagaacataccatattagtcctttcaatagtaatattagccttctaagagattgttttggtgtttctgttattccaacttgtgtaattcctcatactttataactttttggtttgtattgtcatatagattgtttggaagtgacttttatatctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="51394" stop="50242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51094" g_stop="50931" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50930" i_stop="50839" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50838" g_stop="50543" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="460" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="480"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E716827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51094" e_stop="50931"/>
          <exon e_start="50838" e_stop="50543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAGGTATGTATTAACTTGTTCAAAAGTGTCCATTTCATCACCTTCCTCCATCTTAAACCGTCATTTGAGCAAAACGCCCTTCCCTTCCCTTCCAGGTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</genome_strand>
        <mrna_strand>GTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAG............................................................................................GTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E254017" ref_strand="+" ref_description="SGN-E254017 [cLEG-34-A24]">
      <seq>tttgacagacttgaagatggatgagcatacatctaatggcaatatggatgaagatagcgatgatgaatacgttgggaacttagacccttcgtgttgcttcatgtgtgataaagaacacaataccattgagagctgcatggttcacatgcacaagaatcatggattcttcatccctgatgtcgagtatcttaaggatcccaaagggttccttacttaccttggtctcaaggttaaaagggatttcatgtgcttgtattgcaactacagatgtctacctttcagcagtttagaagcagttcggaagcatatggaagcaaagaatcattgcagagtgcattatggtgatggtgatgatgatgaagaagctgaattagaagagttttatgactatagcagcagctttgttgatgaatctgggaaacagctcatttcatcggatgacacgggcaacagtgtggaacttggaagtggtggatctgagctcataataacaagaagaaataatgatggaagatctgttaggactcttggatcaagagagtttttgcgttactaccgacagaaactgaggcctacacggaccaatgatgtggctataagtgctgcattagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="52081" stop="50634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51781" g_stop="51553" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51552" i_stop="51471" i_length="82">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51470" g_stop="51301" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="399" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51300" i_stop="51150" i_length="151">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51149" g_stop="50934" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="615" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E254017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51781" e_stop="51553"/>
          <exon e_start="51470" e_stop="51301"/>
          <exon e_start="51149" e_stop="50934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAGACTTGAAGATGGATGAGCATACATCTAATGGCAATATGGATGAAGATAGCGATGATGAATACGTTGGGAACTTAGACCCTTCGTGTTGCTTCATGTGTGATAAAGAACACAATACCATTGAGAGCTGCATGGTTCACATGCACAAGAATCATGGATTCTTCATCCCTGATGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAGGTAGAATATGTGCTTCCTCTAGACCTTTTTCCAGCATTAACCATTTCCTGTGTTCACAATCTTTTTCTTTTTTCTCGTACAGGTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAGGTATAATTTCTAACATGATTGCTTTCAATGTAATTTTGGTAGGATGAGTGTAGTATATTCTTTTCAAGAATTTTTCTTAAAATAATTTAGGTAGGATGTGTATAGTGAAGCTCCGTACTGTTATTGCTTCTGAGGTTCTCTTCGGTTGTAGCTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGC</genome_strand>
        <mrna_strand>TTTGACAGACTTGAAGATGGATGAGCATACATCTAATGGCAATATGGATGAAGATAGCGATGATGAATACGTTGGGAACTTAGACCCTTCGTGTTGCTTCATGTGTGATAAAGAACACAATACCATTGAGAGCTGCATGGTTCACATGCACAAGAATCATGGATTCTTCATCCCTGATGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAG..................................................................................GTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAG.......................................................................................................................................................CTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E201232" ref_strand="+" ref_description="SGN-E201232 [cLEC-10-E18]">
      <seq>aacaaccaggtcatcctaatgagaatagtgttacaatcaagccgcttctacgccaccctcaaaatgaaacctcacgcaaggccaaagaggatgttattgaggagaatgatgaaagtgatgaaagtgaatgggaggaggttgatccagatgaagagatgattagtgaagccaccgattctttgacagacttgaagatggatgagcatacatctaatggcaatatggatgaagatagcgatgatgaatacgttgggaacttagacccttcgtgttgcttcatgtgtgataaagaacacaataccattgagagctgcatggttcacatgcacaagaatcatggattcttcatccctgatgtcgagtatcttaaggatcccaaagggttccttacttaccttggtctcaaggttaaaagggatttcatgtgcttgtattgcaactacagatgtctacctttcagcagtttagaagcagttcggaagcatatggaagcaaagaatcattgcagagtgcattatggtgatggtgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="52259" stop="51041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51959" g_stop="51553" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51552" i_stop="51471" i_length="82">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51470" g_stop="51341" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="537" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E201232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51959" e_stop="51553"/>
          <exon e_start="51470" e_stop="51341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCAGGTCATCCTAATGAGAATAGTGTTACAATCAAGCCGCTTCTACGCCACCCTCGAAATGAAACCTCACGCAAGGCCAAAGAGGATGTTATTGAGGAGAATGATGAAAGTGATGAAAGTGAATGGGAGGAGGTTGATCCAGATGAAGAGATGATTAGTGAAGCCACCGATTCTTTGACAGACTTGAAGATGGATGAGCATACATCTAATGGCAATATGGATGAAGATAGCGATGATGAATACGTTGGGAACTTAGACCCTTCGTGTTGCTTCATGTGTGATAAAGAACACAATACCATTGAGAGCTGCATGGTTCACATGCACAAGAATCATGGATTCTTCATCCCTGATGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAGGTAGAATATGTGCTTCCTCTAGACCTTTTTCCAGCATTAACCATTTCCTGTGTTCACAATCTTTTTCTTTTTTCTCGTACAGGTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATG</genome_strand>
        <mrna_strand>AACAACCAGGTCATCCTAATGAGAATAGTGTTACAATCAAGCCGCTTCTACGCCACCCTCAAAATGAAACCTCACGCAAGGCCAAAGAGGATGTTATTGAGGAGAATGATGAAAGTGATGAAAGTGAATGGGAGGAGGTTGATCCAGATGAAGAGATGATTAGTGAAGCCACCGATTCTTTGACAGACTTGAAGATGGATGAGCATACATCTAATGGCAATATGGATGAAGATAGCGATGATGAATACGTTGGGAACTTAGACCCTTCGTGTTGCTTCATGTGTGATAAAGAACACAATACCATTGAGAGCTGCATGGTTCACATGCACAAGAATCATGGATTCTTCATCCCTGATGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAG..................................................................................GTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E252036" ref_strand="+" ref_description="SGN-E252036 [cLEG-8-M16]">
      <seq>gttgaaatgcttggcttaacttgtaacgcttgtgacaaggagtgggttgatgatactgagcaaaagcttcattacaaatctgaatggcaccgatacaatcttaaacgcaaggttgcaggagttcctggagtgagagagactatttttctagccagacaggctgcacttgcagaagagaaggaaaagttgagtgaaactccattgctatatgcctgtggtctgtgtgacaaagagtatagaagctccaaggctcatgctcagcatctgaaatctaaaagtcacttagcacgggcttctcaacaaccaggtcatcctaatgagaatagtgttacaatcaagccgcttctacgccaccctcgaaatgaaacctcacgcaaggccaaagaggatgttattgaggagaatgatgaaagtgatgaaagtgaatgggaggaggttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="53798" stop="51516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53499" g_stop="53389" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53388" i_stop="52147" i_length="1242">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52146" g_stop="51816" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="442" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E252036" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53499" e_stop="53389"/>
          <exon e_start="52146" e_stop="51816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAATGCCAGGCTTAACTTGTAACGCTTGTGACAAGGAATTTGTTGATGATACTGAGCAAAAGCTTCATTACAAATCTGAATGGCACCGATACAATCTTAAACGCAAGGTATTTGCTCAAAAACAAACCCCTTTTTGATACTTTTTTGTTTTGAAAAAGTGAAATTGTTTGTTTGTATGAATTGAATGTATTAGTTTGTGTTTGTTGTGTATTGGATTGAATGCTATGGAACCTCTGTAATTAGGGAGATTAAACATAGCCTCTATGTGCAGGGATAGAGCCAGATTGTTTGTTACAGGTTTGGCATAAGTCATAAACTAGTTATTTTGTCTCAAACCTTGTATTTTGTGTTTAAAAAATTCAATCTTTTTAGAACCCAGTAAAGAAAAATGATTCTGTTGAGCACCATGAGGTCTCGAGTGCAAATTGCAGTAGATAAAACACTAGGTGATGATGGATGGAATTACCTGGTTTTGGCTCAAACCTTGTATTTGTGTTAGAAAGATTCAATCTTTTTAGAACCCAGTAAAGAAAAATGATTCTGTTGAGCACCATGAGGTCGATATAACACTAGGTGATGATGGATAGAATTACCTAGTACTTGTTATAGGTGGGAGGTGGTAGATGTTTTGTGGAGGTGCGTGTGAGCTGGTCCATATACCACGGTTATCAGAAAAAAGAAGAGTTGTGGATTGAAACCCATAAACTAGAAATTGTGAACTTGGATGCACCTTAACTCCAACTAATTAATACTTGCCATCTTTCATCAAATAGGACTTTATCCATCAAGGCGTAGATAGTTGTAACAAATAAAGTAGCTTTTTTTTTTTGCTCCTGAATCTTGATTCAGTCATTTTCTTGTTCATTGAATAATCAATGTTCTTACCAAAGGGGGGGGGGGGTACATGCAATATATATGCTTTATTCTGTTGCAAAAAAGCATGTGGATCAAACTTATCAAAAAAACAAGCAGAAATTGGATTTCACCTATTAACAGAAGAAATGGATTATACTAGAAAATATACTACTAATATGATGCTTCATAGGATTTTTTTTCTTTTTATGTCTCTGGTGTCGTTACCAAATACCAAAATCCTACATATCACTGGCCTCTTTACCTATTAGTTTCATAGGCCTGGAAGAGTATGAGTCTGGTTATGGACCTGTGTCCAATCGATATTTTTCAACTGAATACTACCTAACTAGGGACTTCAGTTCATGCATCATTCATCAAAGCTTAGGATTGATGACTCTATATGTCTACTCTCTTCCATATGGTTCTTTATGGAATGGCTTCATGGGTTAGTATGCAGAATTGTGATGTTTTTGCTCTCATGCATGTTTTTTCAGGTTGCAGGAGTTCCTGGAGTGAGAGAGACTATTTTTCTAGCCAGACAGGCTGCACTTGCAGAAGAGAAGGAAAAGTTGAGTGAAACTCCATTGCTATATGCCTGTGGTCTGTGTGACAAAGAGTATAGAAGCTCCAAGGCTCATGCTCAGCATCTGAAATCTAAAAGTCACTTAGCACGGGCTTCTCAACAACCAGGTCATCCTAATGAGAATAGTGTTACAATCAAGCCGCTTCTACGCCACCCTCGAAATGAAACCTCACGCAAGGCCAAAGAGGATGTTATTGAGGAGAATGATGAAAGTGATGAAAGTGAATGGGAGGAGGTTGATC</genome_strand>
        <mrna_strand>GTTGAAATGCTTGGCTTAACTTGTAACGCTTGTGACAAGGAGTGGGTTGATGATACTGAGCAAAAGCTTCATTACAAATCTGAATGGCACCGATACAATCTTAAACGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGGAGTTCCTGGAGTGAGAGAGACTATTTTTCTAGCCAGACAGGCTGCACTTGCAGAAGAGAAGGAAAAGTTGAGTGAAACTCCATTGCTATATGCCTGTGGTCTGTGTGACAAAGAGTATAGAAGCTCCAAGGCTCATGCTCAGCATCTGAAATCTAAAAGTCACTTAGCACGGGCTTCTCAACAACCAGGTCATCCTAATGAGAATAGTGTTACAATCAAGCCGCTTCTACGCCACCCTCGAAATGAAACCTCACGCAAGGCCAAAGAGGATGTTATTGAGGAGAATGATGAAAGTGATGAAAGTGAATGGGAGGAGGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E372289" ref_strand="-" ref_description="SGN-E372289 [TUS-30-P17]">
      <seq>atcgaacaagatgaagagttatcttatgagcgactactggcgttggagtccaatttgttcctcagtggccttaacttttatgaccagcatagagacatgagactagatattgatgacatgtcctatgaggaattattagcacttgaggagaggattggctctgttagtaccgctctgcccgaggaagaactatcaaagtgcctcaggagaaacatttatcagggtatggcttcagaaacagaaacactagaagctgatgaggatggagatgacatcaagtgcagcatttgtcaggaggagtacgtgatcggagatgaaatagggaacctgggttgtgaacacgggtatcatatggagtgcataaagcagtggtttaagctcaagaactggtgccctatctgtaaggctgcagtagaatcatcgaaaccgacatcttagttgcaaaatggttagataccttaaaccccagatgtgggaaagctgttaaacagtttccctgtgtacaaattcatctggggttggtttttgtggattcctgcaattcatatttactgttctctttttcctctattctcttgaacttttttttgtctcttttcttttgcttaattgctctcttgccatatgaaccaataaacccaggccttcttctggctttgtggtggtgaatgttttcatattcatttccttcaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="76443" stop="74121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76143" g_stop="76114" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76113" i_stop="76034" i_length="80">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76033" g_stop="75935" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75934" i_stop="75299" i_length="636">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75298" g_stop="75134" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="294" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75133" i_stop="74822" i_length="312">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74821" g_stop="74412" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="704" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E372289" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372289" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76143" e_stop="76114"/>
          <exon e_start="76033" e_stop="75935"/>
          <exon e_start="75298" e_stop="75134"/>
          <exon e_start="74821" e_stop="74412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAACAAGATGAAGAGTTATCTTATGAGGTATTCAATGTTGATTATTTTTCTTCTCCTGTGAATTTACTATTTCGGTTTGTGAATGAGCTCTTATTTTCTATCTACAGCGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAGGTCTGTTTTTGTTTTTTTCACAACTTATAAGAAATTTATTACTATGACTTCCTCAAACACTTTGATAATCTTATAAATGTTCTATAGTTCTCATTTTGTTTTTAGAACAGTATAGTTTGTCTACAAAGTATGGAAAATTCATATCCTAACTCGAGTTAAAAATTTACTACCTCTGTCTCAATTTATGTGGCACTGTTTGACTTAGCACAAAGTTTAAGAAAGAAATGAAAGACTTTTGAAATTTGTGGTCTAAAATCCTCTTTAATCAGCTAAACGTGGAATTTTAAAGTTAAATTGTTTCTTATATAGAATAATGACATGCTTTTTAGGAAAGACTAAAAAAGAAAGGGTGCCACATAAATTTGGATAGAGGGACGAAAAAGTTAGTCCTCATTGTCGAACCCCATCATTCACGATTGGAGGATGGCAAAAGAGTTTATGACTACTTAATGTTCATTGGTGTTCTCTTTTGCAAGAACGCTTGATGGTTATTTATTTGAAGTTATTTCTTAGCTGAAAGTTTCTCAATTAAAGTTTTCCCATCAGTCTTGTATGATATTTTCTACATCGTCTGAAAAATGTTTTTATCCCTTCATATCCATCATCTGATAAATTATTTATTGATTTTTGTAATAGGAATTATTAGCACTTGAGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGCAGCATTTGTCAGGTTGTCGTCCTATTTTAAGCATATCTATCATTTTCATTTTTGATATTTATAGCATTGTGTTGTGTATTTCCTTTGCCTATGAAATTATCTTTTCAAATGAAGAGAAGCTCTAACCATGCTGTCGACATTTCCAAGCGAATATGACGTATCCTCTGTGTGAGACTAAATCTTTATATTATTATCTATAAACCCTCAGCTAGTTTGGTCGACACTCGACTATATGAATCCTCGTTGACCATATCGCTCTGTTTGAGCTCATTTCAGTCCAAATGAATCGAGTTACTAACTCTGACAGTCAAAACATTTTTGCAGGAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAAATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTACAAATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTCCTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTCTTGCCATATGAACCAATAAACCCAGGCCTTCTTCTGGCTTTGTGGTGGTGAATGTTTTCATATTCATTTCCTTCAACATTTGCTAAA</genome_strand>
        <mrna_strand>ATCGAACAAGATGAAGAGTTATCTTATGAG................................................................................CGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATTAGCACTTGAGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGCAGCATTTGTCAG........................................................................................................................................................................................................................................................................................................................GAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAAATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTACAAATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTCCTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTCTTGCCATATGAACCAATAAACCCAGGCCTTCTTCTGGCTTTGTGGTGGTGAATGTTTTCATATTCATTTCCTTCAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E214084" ref_strand="+" ref_description="SGN-E214084 [cLEC-80-E4]">
      <seq>attgcagagatataacatggatggagtcgctcaggtattgctggcacttgagagaatcgaacaagatgaagagttatcttatgagcgactactggcgttggagtccaatttgttcctcagtggccttaacttttatgaccagcatagagacatgagactagatattgatgacatgtcctatgaggaattattagcacttgaggagaggattggctctgttagtaccgctctgcccgaggaagaactatcaaagtgcctcaggagaaacatttatcagggtatggcttcagaaacagaaacactagaagctgatgaggatggagatgacatcaagtgcagcatttgtcaggaggagtacgtgatcggagatgaaatagggaacctgggttgtgaacacgggtatcatatggagtgcataaagcagtggtttaagctcaagaactggtgccctatctgtaaggctgcagtagaatcatcgaaaccgacatcttagttgcaaaatggttagataccttaaaccccagatgtgggaaagctgttaaacagtttccctgtgtacaattcatctggggttggtttttgtggattcctgcaattcatatttactgttctctttttcctctattctcttgaacttttttttgtctcttttcttttgcttaattgctctnnctgcatatgaaccaataaacccaggccttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="76582" stop="74164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76282" g_stop="76249" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76248" i_stop="76165" i_length="84">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76164" g_stop="76114" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="85" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76113" i_stop="76034" i_length="80">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76033" g_stop="75935" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="184" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75934" i_stop="75299" i_length="636">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75298" g_stop="75134" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="349" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75133" i_stop="74822" i_length="312">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74821" g_stop="74464" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="706" r_length="357" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E214084" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76282" e_stop="76249"/>
          <exon e_start="76164" e_stop="76114"/>
          <exon e_start="76033" e_stop="75935"/>
          <exon e_start="75298" e_stop="75134"/>
          <exon e_start="74821" e_stop="74464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGAGATATAACATGGATGGAGTCGCTCAGGTATTCTTGGAGGAATTCAGATTTAATATACTTCCTACAAGCTTACTGATATTTAAGTATATTGGTCTTGCTTTTACTTTGCAGGTATTGCTGGCACTTGAGAGAATCGAACAAGATGAAGAGTTATCTTATGAGGTATTCAATGTTGATTATTTTTCTTCTCCTGTGAATTTACTATTTCGGTTTGTGAATGAGCTCTTATTTTCTATCTACAGCGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAGGTCTGTTTTTGTTTTTTTCACAACTTATAAGAAATTTATTACTATGACTTCCTCAAACACTTTGATAATCTTATAAATGTTCTATAGTTCTCATTTTGTTTTTAGAACAGTATAGTTTGTCTACAAAGTATGGAAAATTCATATCCTAACTCGAGTTAAAAATTTACTACCTCTGTCTCAATTTATGTGGCACTGTTTGACTTAGCACAAAGTTTAAGAAAGAAATGAAAGACTTTTGAAATTTGTGGTCTAAAATCCTCTTTAATCAGCTAAACGTGGAATTTTAAAGTTAAATTGTTTCTTATATAGAATAATGACATGCTTTTTAGGAAAGACTAAAAAAGAAAGGGTGCCACATAAATTTGGATAGAGGGACGAAAAAGTTAGTCCTCATTGTCGAACCCCATCATTCACGATTGGAGGATGGCAAAAGAGTTTATGACTACTTAATGTTCATTGGTGTTCTCTTTTGCAAGAACGCTTGATGGTTATTTATTTGAAGTTATTTCTTAGCTGAAAGTTTCTCAATTAAAGTTTTCCCATCAGTCTTGTATGATATTTTCTACATCGTCTGAAAAATGTTTTTATCCCTTCATATCCATCATCTGATAAATTATTTATTGATTTTTGTAATAGGAATTATTAGCACTTGAGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGCAGCATTTGTCAGGTTGTCGTCCTATTTTAAGCATATCTATCATTTTCATTTTTGATATTTATAGCATTGTGTTGTGTATTTCCTTTGCCTATGAAATTATCTTTTCAAATGAAGAGAAGCTCTAACCATGCTGTCGACATTTCCAAGCGAATATGACGTATCCTCTGTGTGAGACTAAATCTTTATATTATTATCTATAAACCCTCAGCTAGTTTGGTCGACACTCGACTATATGAATCCTCGTTGACCATATCGCTCTGTTTGAGCTCATTTCAGTCCAAATGAATCGAGTTACTAACTCTGACAGTCAAAACATTTTTGCAGGAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAAATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTACAAATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTCCTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTCTTGCCATATGAACCAATAAACCCAGGCCTTCTTCT</genome_strand>
        <mrna_strand>ATTGCAGAGATATAACATGGATGGAGTCGCTCAG....................................................................................GTATTGCTGGCACTTGAGAGAATCGAACAAGATGAAGAGTTATCTTATGAG................................................................................CGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATTAGCACTTGAGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGCAGCATTTGTCAG........................................................................................................................................................................................................................................................................................................................GAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAAATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTAC-AATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTCCTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTNNCTGCATATGAACCAATAAACCCAGGCCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E372290" ref_strand="+" ref_description="SGN-E372290 [TUS-30-P17]">
      <seq>ttcagcaaagagagatactggatccagcaaagttgtatttacagaagttggttgctctagtggaacatcgaacagtagacctcgaaaaatatttggtcatggacctggttcttccaaccaaaagagtccaatgaattcctctatttcttcgtcgtctaaatccattagtgctgggacaaggagcagtagtagtggagagggatacaggttgagaaatctgaagtgcaattccacacctgatgtcctcccatatagttcttcatcatcagaatcaagtattagtcgaagggaaacagtaaaaaggagaaatactgaaggtgaaagcagttcatcatctaaagggaaaaaaatgagtggtgcatcgccaaatgaagggcgtgcagttcgtcctgctactggaatctccatctctgattcaaggagtagtagaagctcggatttcagtgacggtaatcgtgctgtatcagttcggacccgcaggtcaatgaatgtgagtactaggttaaggggtcctgttcaggattcattgcatactaagtcttctggcttaagccaaaatttacctgagcatggaactccgaatctagatatgcctagttcatccagtcaacttttcatggattcttcatcaagtgattatagcacatatagtttacctgcaaatgattatgatgatgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="77350" stop="76070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77050" g_stop="76370" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E372290" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77050" e_stop="76370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGATGATGACGA</genome_strand>
        <mrna_strand>TTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCGAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGATGATGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E710351" ref_strand="+" ref_description="SGN-E710351 [FA55AF10]">
      <seq>cctttcgtcaattccaatttgattcagcaaagagagatactggatccagcaaagttgtatttacagaagttggttgctctagtggaacatcgaacagtagacctcgaaaaatatttggtcatggacctggttcttccaaccaaaagagtccaatgaattcctctatttcttcgtcgtctaaatccattagtgctgggacaaggagcagtagtagtggagagggatacaggttgagaaatctgaagtgcaattccacacctgatgtcctcccatatagttcttcatcatcagaatcaagtattagtcgaagggaaacagtaaaaaggagaaatactgaaggtgaaagcagttcatcatctaaagggaaaaaaatgagtggtgcatcgccaaatgaagggcgtgcagttcgtcctgctactggaatctccatctctgattcaaggagtagtagaagctcggatttcagtgacggtaatcgtgctgtatcagttcggacccgcaggtcaatgaatgtgagtactaggttaaggggtcctgttcaggattcattgcatactaagtcttctggcttaagccaaaatttacctgagcatggaactccaaatctagatatgcctagttcatccagtcaacttttcatggattcttcatcaagtgattatagcacatatagtttacctgcaaatgattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="77367" stop="76079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77072" g_stop="76379" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E710351" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77072" e_stop="76379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGA</genome_strand>
        <mrna_strand>CCTTTCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E289212" ref_strand="+" ref_description="SGN-E289212 [cLES-18-C5]">
      <seq>ttcagcaaagagagatactggatccagcaaagttgtatttacagaagttggttgctctagtggaacatcgaacagtagacctcgaaaaatatttggtcatggacctggttcttccaaccaaaagagtccaatgaattcctctatttcttcgtcgtctaaatccattactgctgggacaaggagcagtagtagtggagagggatacaggttgagaaatctgaagtgcaattccacacctgatgtcctcccatatagttcttcatcatcagaatcaagtattagtcgaagggaaacagtaaaaaggagaaatactgaaggtgaaagcagttcatcatctaaagggaaaaaaatgagtggtgcatcgccaaatgaagggcgtgcagttcgtactgctactggaatctccatctctgattcaaggagtagtataagctcggatttcagtgacggtaatcgtgctgtatcagatcggacccgcaggtcaatgaatgtgagtactaggttaaggggtcctgttcaggattcattgcgtactaagtcttctggcttaagccaaaatttacctgagcatggaactccaaatctagatatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="77350" stop="76156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77050" g_stop="76456" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E289212" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77050" e_stop="76456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCT</genome_strand>
        <mrna_strand>TTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTACTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTACTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTATAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGATCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCGTACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E331476" ref_strand="+" ref_description="SGN-E331476 [cTOD-9-G13]">
      <seq>tgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattgaagataagcgatcagataccagttccttacgtaaagagtcacaagttttaaaacagatgcagtcatcaacggagcgtcaattccaatttgattcagcaaagagagatactggatccagcaaagctgtatttacagaagttggttgctctagtggaacatcgaacagtagacctcgaaaaatatttggtcatggacctggttcttccaaccaaaagagtgcaatgaattcctctatttcttcgtcgtctaaatccattagtgctgggacaaggagcactagtagtggagagggatacaggttgagaaatctgaagtgcaattccacacctgatgtcctcccatatagttcttcatcatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="77515" stop="76481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77215" g_stop="76781" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E331476" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77215" e_stop="76781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGA</genome_strand>
        <mrna_strand>TGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGCTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTGCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCACTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E207889" ref_strand="+" ref_description="SGN-E207889 [cLEC-34-G4]">
      <seq>ttttttttctttgggataaagaagaagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcactattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattgaagataagcgatcagataccagttccttacgtaaagagtcacaagttttaaaacagatgcagacatcaacggagcgtcaattgcaatttgattcagcaaagagagatactggatccagcaaagttgtatttacagaagttggttgctctagtggaacatcgaacagtagacctcgaaaaatatttggtcatggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79628" stop="76645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79328" g_stop="79275" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="76945" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="580" r_length="526" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E207889" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79328" e_stop="79275"/>
          <exon e_start="77470" e_stop="76945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCT</genome_strand>
        <mrna_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCACTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGACATCAACGGAGCGTCAATTGCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E333642" ref_strand="+" ref_description="SGN-E333642 [cTOD-22-P3]">
      <seq>ttttttttctttgggataaagaagaagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcagtattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattgaagataagcgatcagataccagttccttacgtaaagagtcacaagttttaaaacagatgcagtcatcaacggagcgtcaattccaatttgattcagcaaagagagatactggatccagcaaagttgtatttacagaagttggttgctctagtggaacatcgaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79628" stop="76675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79328" g_stop="79275" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="76975" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="550" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E333642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79328" e_stop="79275"/>
          <exon e_start="77470" e_stop="76975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGT</genome_strand>
        <mrna_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E320172" ref_strand="+" ref_description="SGN-E320172 [cTOB-21-P8]">
      <seq>tttgttgaagatttgttcgtcttctctatatagtctttctccattttcatcagcttcgatcctataatctctctcgtgaaaaagggattttttttctttgggataaagaagaagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcagtattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattgaagataagcgatcagataccagttccttacgtaaagagtcacaagttttaaaacagatgcagtcatcaacggagcgtcaattccaatttgattcagcaaagagagatactggatccagcaaagttgtatttacagaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79715" stop="76702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79415" g_stop="79275" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77002" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="610" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E320172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79415" e_stop="79275"/>
          <exon e_start="77470" e_stop="77002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGAAGATTTGTTCGTCTTCTCTATATAGTCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGTGAAAAAGGGATTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTT</genome_strand>
        <mrna_strand>TTTGTTGAAGATTTGTTCGTCTTCTCTATATAGTCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGTGAAAAAGGGATTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E338504" ref_strand="+" ref_description="SGN-E338504 [cTOE-15-H6]">
      <seq>aagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagaacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacacctgctgaaaacaaagataaaaatgttcagtattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgacctacctgcaagaaggtcaggcaaggaatctcaccaagaagtactcttctaaccattgaagataagcgatcagatacccagttccttacgtaaagagtcaccaagttttaaaacagatgcagtcatcaacggagcgtcaattccaatttgattcagcaaagagagatactggatcccgcaaagttgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79604" stop="76711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79304" g_stop="79275" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77011" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="498" r_length="468" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E338504" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79304" e_stop="79275"/>
          <exon e_start="77470" e_stop="77011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAG-ACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACA-CTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGA-CTA-CTGCAAGAAGGTCAGGCAAGGAATCTCA-CAAGAAGTACTCTTCTAA-CATTGAAGATAAGCGATCAGATA-CCAGTTCCTTACGTAAAGAGTCA-CAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTT</genome_strand>
        <mrna_strand>AAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGAACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACCTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACCTACCTGCAAGAAGGTCAGGCAAGGAATCTCACCAAGAAGTACTCTTCTAACCATTGAAGATAAGCGATCAGATACCCAGTTCCTTACGTAAAGAGTCACCAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCCGCAAAGTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E335844" ref_strand="+" ref_description="SGN-E335844 [cTOE-6-H11]">
      <seq>aagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcagtattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattgaagataagcgatcagataccagttccttacgtaaagagtcacaagttttaaaacagatgcagtcatcaacggagcgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79604" stop="76763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79304" g_stop="79275" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77063" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="438" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E335844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79304" e_stop="79275"/>
          <exon e_start="77470" e_stop="77063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCA</genome_strand>
        <mrna_strand>AAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E332972" ref_strand="+" ref_description="SGN-E332972 [cTOD-19-N21]">
      <seq>ttttttttctttgggataaagaagaagaaaacaacgaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcagtattgttctagacttggatgtagtggccgggtcaattatactaagagtaccagagttggaggcatggagaaaccgagaccactaaggcctactttcggttcatcaaacggaaaggaagtagttgggagttcatctgtgacatcctctggaatgactactgcaagaaggtcaggcaaggaatctcacaagaagtactcttctaacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79628" stop="76842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79328" g_stop="79275" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77142" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="383" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E332972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79328" e_stop="79275"/>
          <exon e_start="77470" e_stop="77142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTG</genome_strand>
        <mrna_strand>TTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E320289" ref_strand="+" ref_description="SGN-E320289 [cTOB-21-P7]">
      <seq>tcttctctatatagtctttctccattttcatcagcttcgatcctataatctctctcgagaaaaagggattttttttctttgggataaagaagaagaaaacaaccaaaacagaagagaaaaagatataaatggtgcttcgtgtaagacatggatgaatatcctgttaaaagagctgggaatgggcttgtcgccgccagaagaggtttaagggacactgctgaaaacaaagataaaaatgttcagtattgttctaaacttggatgtactggccgggtcaattatactaagactaccagagttggaggcatggagaaaccgagaccacgagggcctactttcggttcatcagacgggaaggaagtaggtgggagttcatctgtgacatcctctggaatgactactgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="79696" stop="76885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79396" g_stop="79275" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804">
            <donor d_prob="0.860" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77470" g_stop="77185" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="408" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E320289" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79396" e_stop="79275"/>
          <exon e_start="77470" e_stop="77185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTATATAGTCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGTGAAAAAGGGATTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAGGTGGATTAATTAAAGAAAAAAGTTTGTTTTTTTTTCGTTTTGAATGATTGTGAAACTGTAGTTTTTTCACCTTTTTGTGATGTTTTTTGAATTGGGTTTGGGTGAAAATTGACTTTTCAGTCGTTATCTGAATTGGGTTTGGATAAAAAATGGATGTTTAGACTTTTTGATTCAATCGTCTTTTGGTTGATTATGGTGATATAGTTCAGTTTTCTGCGATTTTGCGATTTGGGTTTGGAAGTAGAGAGGCGAAAAATGAATTTTTAGTTGTTTTCTTTCAATCGTCTTTTGGCTGATTATGGTGATATAATTCAGTTTTCTGCGATTTTGCGAATTGGGTTTGGAAGTATTGAAGCATAAAATGAATTTTCTGTAGTTTTTATCGATCGTCTTTTGGCTGATTATGGTGATATAGTTCAGTTTTCTGCAATTTCTCGAATTGGGTTTGGAAGTAGAGAAGCGAAAAATGAATTTTTTCGTTGTTTTGTTTCAATCATCTTTTGGCTGATTATGGTGCTATAGTTCAGTTTTATGGGATTTTGGTGAATTGGGATTTGAAGTTAAAAGAGGCAAAACAGGATTTCTGATCGTTTTTCTTTTGGATGATTATGGTGATATATAATTCAGTTTCCGGTGATTTGGTGAATTGGGTTTGAAGTTACATAAGAAAATGATATAGTTTAGTTTCCTGTGATTTTGTGAATTGGGTTTTGGAGTTGGAGAGGCAGAGATGAACTTTCTATTGTTTTTGCTGATTATGATACTGTTATACATCACTTTATGTGATAATTTGAATTGACTTTGGAAGTAGAGAAGCAAAAAAATGTTTTTTTAGTAGTTTCTATCAATAGTTTATAGCTGATTATAGTGTTATGGTTCAGTTTCCTGCGATTTCGTGAATTGAGTTTTGTAGTAAGAGATGGGAAAAAAGATTTTCAATCAATTCTTTTGATGTGTTTTTTTACTTTCTCCCCCATTTGATTGTTGTCTTGTTGATAAGTTTTATTGGGATTCTATGTCTATGTGTTTAATTTTTTTATTGAATGATGAACTTTACGTGCCTCTGATGAAAGTTTTGGTATCTACTTTTGTTAGTTTGAAGCCACTTTACAGCTTTTTGTTACAATATTTTATGGGACAGTAGTTGAATTCATACGGTATTTCTCTCTTATTTTCCCTTTGTGGATGATTATTTTAGGTTGTCATTTATGTTATATAGGGAAGTGGGTTTTAGCAAATGATTCTTGTCATTTATACTGGTTTAGCTACGGGATTTTCGTAGAATTTAGGGGATGTATTGATCTTTGAATTTGGTTTAAAGCTATGTGAATATTAGATGGGTTTATCTGGTTAAAGAAAAAGTATGTAGGGAAAAAGAATTTGGTTTTTGATTGCGATAGTACTATTGCCAAGGGTCTTTCGGAAACAACCTCTCTGTCTCCACGAGGCAAGGACTCCACTTGTGGTAATACACGAGGTCTGTTGTTGTTGTTGTGATAGAACTATTGAAAAGTTTGGATTTTTGAATGATATTTATGAGTTAGATAGAGTTATAGTCATCTACTTAGTGAACTGTTATGATTTATGCGTGAATCTCTTTGATGTTGATCACTTAATATGAATGAAGTTCCTCTTAGCTAGTAATTGCTAATAGTACGAGATTACTTCAGTATTTTACTGAAATCCTGTTCTATCGTGAGAATTGTTGTCAGCTGCAAAAGAAATGTCTGCGTAGCCATATACAGCTTCCTTGTTGTAAGGCTTAATCAAGGATTTCTAATTTAAGGTTATATGGTTTATGCAGATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGA</genome_strand>
        <mrna_strand>TCTTCTCTATATAGTCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGAGAAAAAGGGATTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACCAAAACAGAAGAGAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAAACTTGGATGTACTGGCCGGGTCAATTATACTAAGACTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACGAGGGCCTACTTTCGGTTCATCAGACGGGAAGGAAGTAGGTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E330589" ref_strand="+" ref_description="SGN-E330589 [cTOD-8-O22]">
      <seq>atctctaggaatacattcatgggaaattgcaaaaaataaaacaaacatttaacttttggcattttaatgcaatataaggaaaatgcacatattaaatgggagtctttgaataagctgtctacattatacccttgaggtgcggctcttccttgaaccctaatcctgcatgaatgcggaatatgttgtgcactggctaaaaaacataatcaacaaaagaaaacagaaagaaagacaaattaatagcacctttttaatcaaaatagatgatccatgacctccactatattagatagatagatagattattgatagggaaaagaaacttaaaagagaattgtgaagaaaaagatttaaaataaataggaaagaaaagtaaagaaaaaaaaggttgaagaaatagagagattgatgaacttgaaaagagttatttttgggagtttggttgttatattaagtacgaaaattatggataacccaaggttgtggaagcacataaacacaaagatgtaattatcattacagctcatataaaaattattaaatactataatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="90314" stop="89159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90014" g_stop="89459" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E330589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90014" e_stop="89459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTAGGAATACATTCATGGGAAATTGCAAAAAATAAAACAAACATTTAACTTTTGGCATTTTAATGCAATATAAGGAAAATGCACATATTAAATGGGAGTCTTTGAATAAGCTGTCTACATTATACCCTTGAGGTGCGGCTCTTCCTTGAACCCTAATCCTGCATGAATGCGGAATATGTTGTGCACTGGCTAAAAAACATAATCAACAAAAGAAAACAGAAAGAAAGACAAATTAATAGCACCTTTTTAATCAAAATAGATGATCCATGACCTCCACTATATTAGATAGATAGATAGATTATTGATAGGGAAAAGAAACTTAAAAGAGAATTGTGAAGAAAAAGATTTAAAATAAATAGGAAAGAAAAGTAAAGAAAAAAAAGGTTGAAGAAATAGAGAGATTGATGAACTTGAAAAGAGTTATTTTTGGGAGTTTGGTTGTTATATTAAGTACGAAAATTATGGATAACCCAAGGTTGTGGAAGCACATAAACACAAAGATGTAATTATCATTACAGCTCATATAAAAATTATTAAATACTATAATATTAC</genome_strand>
        <mrna_strand>ATCTCTAGGAATACATTCATGGGAAATTGCAAAAAATAAAACAAACATTTAACTTTTGGCATTTTAATGCAATATAAGGAAAATGCACATATTAAATGGGAGTCTTTGAATAAGCTGTCTACATTATACCCTTGAGGTGCGGCTCTTCCTTGAACCCTAATCCTGCATGAATGCGGAATATGTTGTGCACTGGCTAAAAAACATAATCAACAAAAGAAAACAGAAAGAAAGACAAATTAATAGCACCTTTTTAATCAAAATAGATGATCCATGACCTCCACTATATTAGATAGATAGATAGATTATTGATAGGGAAAAGAAACTTAAAAGAGAATTGTGAAGAAAAAGATTTAAAATAAATAGGAAAGAAAAGTAAAGAAAAAAAAGGTTGAAGAAATAGAGAGATTGATGAACTTGAAAAGAGTTATTTTTGGGAGTTTGGTTGTTATATTAAGTACGAAAATTATGGATAACCCAAGGTTGTGGAAGCACATAAACACAAAGATGTAATTATCATTACAGCTCATATAAAAATTATTAAATACTATAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E392923" ref_strand="+" ref_description="SGN-E392923 [TUS-37-N1]">
      <seq>ttttttttttttttttgactttttcataagtttaacttattactattcttttgcagcttttacaagttcaaaatctagttaagccaaagaatataatggcaacaagggcaaaggagactgctccagcatgaaaggagaagagaggggtatctccatcacatcccattcctaattatatgagaagtcctaattcatcaactacaaactctccggtgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="56948" stop="90972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90454" g_stop="90672" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E392923" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90454" e_stop="90672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGTCCATTTGGTGACTTTTTCATAAGTTTAACTTATTACTATTCTTTTGCAGCAAAATACAAGTTCAAAATCTAGTTAAGCCAAAGAATATAATGGCAACAAGGGCAAAGGAGACTGCTCCAGCAGGAAAGGAGAAGAGAGGGGTATCTCCATCACATCCCATTCCTAATTATATGAGAAGTCCTAATTCATCAACTACAAACTCTCCGGTGCGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTGACTTTTTCATAAGTTTAACTTATTACTATTCTTTTGCAGC-TTTTACAAGTTCAAAATCTAGTTAAGCCAAAGAATATAATGGCAACAAGGGCAAAGGAGACTGCTCCAGCATGAAAGGAGAAGAGAGGGGTATCTCCATCACATCCCATTCCTAATTATATGAGAAGTCCTAATTCATCAACTACAAACTCTCCGGTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E378791" ref_strand="+" ref_description="SGN-E378791 [TUS-37-N1]">
      <seq>tgatgctttaggtgttaaatcattgtgactatcctgatcgttgctcgacttgtatatgtcgtcttcatcagtttcagcctgcagaatggcatcctccacagcatgagaagaattagttattgatgcttttggtgttgaactattgtgaccatcttgattatttcttgttttgtgtgtgccattatgaatagtcctgccagcctcctgtttcttggagattatgccagtagttgtgctcttctttattgtccctggtctagcattcgtgctagtgccacgttgtttactggtggcatccttactcatatgagatgctctggataatctatccgtcgtgggtttctgggatgttgaacttttgcctgaaaacgatgaggatgaccgaagaattctctctttaggattagcgcttttttgcaaagtagcaagaggaggcttatcgaatgatcttcttcgatctagagtaggtttattgtgaatgttgagatcacctgatgaagacattgtaggcttgagatagttgggaacattcttgtttgatgtagttgaatctgctcgcttccgcaccggagagtttgtagttgatgaattaggacttctcatataattaggaatgggatgtgatggagatacccctctcttctcctttcctgctggagcagtctcctttgcccttgttgccattatattctttggcttaactagattttgaacttgtattttgctgcaaaagaatagtaataagttaaacttatgaaaaagtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="91533" stop="90164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91233" g_stop="90458" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E378791" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91233" e_stop="90458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCACCGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGTTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTTGTATTTTGCTGCAAAAGAATAGTAATAAGTTAAACTTATGAAAAAGTCACCAAATGGACT</genome_strand>
        <mrna_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCACCGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGTTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTTGTATTTTGCTGCAAAAGAATAGTAATAAGTTAAACTTATGAAAAAGTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E342877" ref_strand="+" ref_description="SGN-E342877 [cTOF-7-P24]">
      <seq>tgatgctttaggtgttaaatcattgtgactatcctgatcgttgctcgacttgtatatgtcgtcttcatcagtttcagcctgcagaatggcatcctccacagcatgagaagaattagttattgatgcttttggtgttgaactattgtgaccatcttgattatttcttgttttgtgtgtgccattatgaatagtcctgccagcctcctgtttcttggagattatgccagtagttgtgctcttctttattgtccctggtctagcattcgtgctagtgccacgttgtttactggtggcatccttactcatatgagatgctctggataatctatccgtcgtgggtttctgggatgttgaacttttgcctgaaaacgatgaggatgaccgaagaattctctctttaggattagcgcttttttgcaaagtagcaagaggaggcttatcgaatgatcttcttcgatctagagtaggtttattgtgaatgttgagatcacctgatgaagacattgtaggcttgagatagttgggaacattcttgtttgatgtagttgaatctgctcgcttccgccggggagagtttgtagttgatgaattaggacttctcatataattaggaatgggatgtgatggagatacccctctcttctcctttcctgctggagcagtctcctttgcccttgntgccattatattctttggcttaactagattttgaacttgtattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="91533" stop="90208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91233" g_stop="90508" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E342877" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91233" e_stop="90508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCACCGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGTTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTTGTATTTTGCT</genome_strand>
        <mrna_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCCGGGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGNTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTTGTATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E345918" ref_strand="+" ref_description="SGN-E345918 [cTOF-24-H23]">
      <seq>tgatgctttaggtgttaaatcattgtgactatcctgatcgttgctcgacttgtatatgtcgtcttcatcagtttcagcctgcagaatggcatcctccacagcatgagaagaattagttattgatgcttttggtgttgaactattgtgaccatcttgattatttcttgttttgtgtgtgccattatgaatagtcctgccagcctcctgtttcttggagattatgccagtagttgtgctcttctttattgtccctggtctagcattcgtgctagtgccacgttgtttactggtggcatccttactcatatgagatgctctggataatctatccgtcgtgggtttctgggatgttgaacttttgcctgaaaacgatgaggatgaccgaagaattctctctttaggattagcgcttttttgcaaagtagcaagaggaggcttatcgaatgatcttcttcgatctagagtaggtttattgtgaatgttgagatcacctgatgaagacattgtaggcttgagatagttgggaacattcttgtttgatgtagttgaatctgctcgcttcnaccgggaagagtttgtagttgatgaattangacttctcatataattaggaatgggatgtgatggagatacccctctcttctcctttcctgctggagcagtctcctttgcccttggtgccattatattctttggcttactagatttgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="91533" stop="90218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91233" g_stop="90518" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E345918" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91233" e_stop="90518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCACCGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGTTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTT</genome_strand>
        <mrna_strand>TGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCNACCGGGAAGAGTTTGTAGTTGATGAATTANGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGGTGCCATTATATTCTTTGGCTT-ACTAGA-TTTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E392735" ref_strand="+" ref_description="SGN-E392735 [TUS-37-N1]">
      <seq>ctgatgctttaggtgttaaatcattgtgactatcctgatcgttgctcgacttgtatatgtcgtcttcatcagtttcagcctgcagaatggcatcctccacagcatgagaagaattagttattgatgcttttggtgttgaactattgtgaccatcttgattatttcttgttttgtgtgtgccattatgaatagtcctgccagcctcctgtttcttggagattatgccagtagttgtgctcttctttattgtccctggtctagcattcgtgctagtgccacgttgtttactggtggcatccttactcatatgagatgctctggataatctatccgtcgtgggtttctgggatgttgaacttttgcctgacaacgatgaagatgacctaacaattctctcttgggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="91534" stop="90532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91234" g_stop="90824" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E392735" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91234" e_stop="90824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGC</genome_strand>
        <mrna_strand>CTGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGACAACGATGAAGATGACCTAACAATTCTCTCTTGGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E241593" ref_strand="-" ref_description="SGN-E241593 [cLED-36-I3]">
      <seq>ctaatactattgtagcttcatcaagacctcaacgtcaagtggtgcaagggaagaaggaatccgtggtctccaataatgtgattgaagagactgcaagtaagcttagagagcaaagaaagaccagagtgaaagccctggctggtgcctttgaaactgtcatctccttgcaggagcccaaggcgtaaattagaccttaaacctggacatgcttggagtgaaagatcagagtcagactctatgcttcagtatgtccaatagggaatgggtcgtaaaggtattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="91385" stop="92612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91685" g_stop="91862" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91863" i_stop="92208" i_length="346">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92209" g_stop="92312" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="282" r_length="104" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E241593" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241593" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91685" e_stop="91862"/>
          <exon e_start="92209" e_stop="92312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATACTATTGTAGCTTCATCAAGACCTCAACGTCAAGTGGTGCAAGGGAAGAAGGAATCCGTGGTCTCCAATAATGTGATTGAAGAGACTGCAAGTAAGCTTAGAGAGCAAAGAAAGAACAGAGTGAAAGCACTGGCTGGTGCCTTTGAAACTGTCATCTCCTTGCAGGAGCCCAAGTGAGTATTTCTGTTTCGAGTATACATATCTTCGTTGGTAGCTGTATGATTATAGTTACCATTCAGTTTATTCTGTTTCCAGTTTTGAGGAACATTCAGTATTACTTATATCTTTGTTCAGAAACCAATAAAAATGATGATAATGATAAAATCAAAGTAACAACATGAACAAGTAACAATAATATAATTGTAACAAAATCACTTTATGTTGTTATCATGTTTTATGATTTCTAATTATGTGTTTCTGTTGAGACACTGATGCTTGTGACATAAAACTATATTTATCATTAGCAGCTTAATCATATACAGTTTTCTGATTAACGTTTTGGAAATATTCTAATTTCAGGGCGTAAATTAGAACTTAAAACTGGACATGCTTGGAGTGAAAGATCAGAGTCAGACACGATGCTACAGTATGGCCGATAGGGAATGGGTCGGAAAGGTATTCCA</genome_strand>
        <mrna_strand>CTAATACTATTGTAGCTTCATCAAGACCTCAACGTCAAGTGGTGCAAGGGAAGAAGGAATCCGTGGTCTCCAATAATGTGATTGAAGAGACTGCAAGTAAGCTTAGAGAGCAAAGAAAGACCAGAGTGAAAGCCCTGGCTGGTGCCTTTGAAACTGTCATCTCCTTGCAGGAGCCCAA..........................................................................................................................................................................................................................................................................................................................................................GGCGTAAATTAGACCTTAAACCTGGACATGCTTGGAGTGAAAGATCAGAGTCAGACTCTATGCTTCAGTATGTCCAATAGGGAATGGGTCGTAAAGGTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E331738" ref_strand="+" ref_description="SGN-E331738 [cTOD-7-L6]">
      <seq>ttacactatgcatcttctcagattaaaatgaaaattcttcaaatcttctgattattttgtcgtttactgaaatagatatactgctgcagctttgtggcagttgctgtacactggtatatctcgtttatgtagtccttgtttgaagggcttccctagtagttagagagattgtccaattttaaagtctataaacaggtagtaattggatcatgcaatcatctaatcaatcatgacaacagtcaatccaatcatttccatttcagttcgtccaagcaattcatattacttttaattacaagctttatactacttctcttaccatacactacacttatgttagttattagttaagtccaattctttcatgtcagtttttacgtaactttcggtattaggatgctatcaagtagtctaggaatgtaatgttgagaggtagaatctcctttttctacattgatactctaatagcagttgataatcattcaatgatattttgatttatcatttgatctgatacattaccatttttggccatcaacaatcctataaaataaatttcatgaccaccagaacctgtggcaaattcaaagggaaatattacatgtgtatacaaatctgatttatacacgaatcaccagttttttttctctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="93438" stop="92186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93138" g_stop="92486" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E331738" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93138" e_stop="92486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTATGCATCTTCTCAGATTAAAATGAAAATTCTTCAAATCTTCTGATTATTTTGTCGTTTACTGAAATAGATATACTGCTGCAGCTTTGTGGCAGTTGCTGTACACTGGTATA-C-CGTTTATGTAGTCCTTGTTTGAAGGGCTTCCCTAGTAGTTAGAGAGATTGTCCAATTTTAAAGTCTATAAACAGGTAGTAATTGGATCATGCAATCATCTAATCAATCATGACAACAGTCAATCCAATCATTTCCATTTCAGTTCGTCCAAGCAATTCATATTACTTTTAATTACAAGCTTTATACTACTTCTCTTACCATACACTACACTTATGTTAGTTATTAGTTAAGTCCAATTCTTTCATGTCAGTTTTTACGTAACTTTCGGTATTAGGATGCTATCAAGTAGTCTAGGAATGTAATGTTGAGAGGTAGAATCTCCTTTTTCTACATTGATACTCTAATAGCAGTTGATAATCATTCAATGATATTTTGATTTATCATTTGATCTGATACATTACCATTTTTGGCCATCAACAATCCTATAAAATAAATTTCATGACCACCAGAACCTGTGGCAAATTCAAAGGGAAATATTACATGTGTATACAAATCTGATTTATACACGAATCACCAGTTTTTTTTCTCTCTCTG</genome_strand>
        <mrna_strand>TTACACTATGCATCTTCTCAGATTAAAATGAAAATTCTTCAAATCTTCTGATTATTTTGTCGTTTACTGAAATAGATATACTGCTGCAGCTTTGTGGCAGTTGCTGTACACTGGTATATCTCGTTTATGTAGTCCTTGTTTGAAGGGCTTCCCTAGTAGTTAGAGAGATTGTCCAATTTTAAAGTCTATAAACAGGTAGTAATTGGATCATGCAATCATCTAATCAATCATGACAACAGTCAATCCAATCATTTCCATTTCAGTTCGTCCAAGCAATTCATATTACTTTTAATTACAAGCTTTATACTACTTCTCTTACCATACACTACACTTATGTTAGTTATTAGTTAAGTCCAATTCTTTCATGTCAGTTTTTACGTAACTTTCGGTATTAGGATGCTATCAAGTAGTCTAGGAATGTAATGTTGAGAGGTAGAATCTCCTTTTTCTACATTGATACTCTAATAGCAGTTGATAATCATTCAATGATATTTTGATTTATCATTTGATCTGATACATTACCATTTTTGGCCATCAACAATCCTATAAAATAAATTTCATGACCACCAGAACCTGTGGCAAATTCAAAGGGAAATATTACATGTGTATACAAATCTGATTTATACACGAATCACCAGTTTTTTTTCTCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E347399" ref_strand="+" ref_description="SGN-E347399 [cTOF-33-A5]">
      <seq>tcaacttcacgcatttttcccccagcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttaggaagtgtggttacgcaaggctgccatgccgccgtcgccgccatttggtctcacaaagacgatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcataaggtaacccttgaagtgaagggtgaaacccagatattgaacttggcagaaaagctaaaagctgggggcattgctcataaactgtggattgaacaaccagaaaacataccaacctgtcttgctacaaaaccttatccaaaatccctggtatcttcatttttcaagaagctaaaactttgtaaatgatgaatttcaagtgtcgtccgtttatgtgatactgacacaagtaggcttagtttcagtgttatggaattgaacctatttgctaatgatgagctactctttgtaatgattaatatttcttgctgaaccctttgcctttgcatgcggttcatcttgatttatattttataatctggtgattctgtccagatgattattggtctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95916" stop="93414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95616" g_stop="95231" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94100" g_stop="93715" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="771" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="786"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E347399" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95616" e_stop="95231"/>
          <exon e_start="94100" e_stop="93715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAGGTGAACCGTCTAATTAGTTGATTTTTGTTTAGTAAGATTCATCATTACTGTTTCGGATTCACCAGATCAGTTAATTATAATACATTTGATCATGTTAAAATATTCATACTATAAGTTAGCTAGAAGGTGATTGGAGGTATATCTCTGTAAAAACCAATACTTAAGCTGAAGAAATTGTAAAGAAAATACTTTTATTGGTTAACTTAGTATATGCTAATAAGATTATGGAACTTGCAACAACTTTAATGATGATGGTTATGTTGACTGCAATAACTGAGTGTGTGCGCCTCGACTATTTCACTGGGTACCTGTTTACCTATTAGATAACTTTGTCCACTAAGGCTTAGTCAGATGGGATTCATAGGAAGGGATTATCTAGTTTTTCTTTTCCTGCTGGAACTTTGACTCTGATCTCCAAGGTTTGTGCCCACTACATTGACTGTTAGGCCATACACAGTGCTAGTGAAGAATGTATTTTAGTTGTTAGATTATTAATTTAGATATCAAGAGGCTGAAAATTCTCATGGTTGCAAGGATAGCAAATGAACGTGATGGGTAAGGTTGTTTGACACGTTGGGTTATGTTAGGAGAAGGCCAAAATGGTGTCACATGTTACAAGTTGTGTCGTTGGTTTCCTGGTGCACTATCTCCTGTGATATTTATTCTCTTAAGCTGTTCAATTTTCAGTTGTATGAAGTTGAAAAGAGCCAGATTGGTGTTCTGTTAGCTCCTTTGTAGTGAATTAGTGATCGCTTAGGTTAGTATGTAAAACATGAATTATGCAGAATTTTACACTGAAGTTGCTTGCTGTGAATTTGGGGTTTATAAGTGCCATTGGACATTTCTAAAGAAGTTCAATATTCTAGTTTACACTATGGTTAACTTATATTCTGCAATGAAGTAAGATTTTTTTTTTTTGAGGAAATGAAGTAAGATTATTTGTAAGAAACTTCCTTTTAATCAGGAATGACGTTGTAAGATTATTTGTAAGCAACTTCCTTGTAATCAGGAATGACGTTCGCATATGTCCACTTCGATGCATTCCAAGTTCTAACTTAGATTAGTCCTTGGTATAGGGATTTTAGAGAAAATCAAAGATTCAATTCAACTTTTTTTTCTTGGCTATGTAGGTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCTGTCCAGATGATTATTGGTCTTA</genome_strand>
        <mrna_strand>TCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTG-CCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCTGTCCAGATGATTATTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E730640" ref_strand="+" ref_description="SGN-E730640 [LA24CH12]">
      <seq>ccgcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttaggaagtgtggttacgcaaggctgccatgccgccgtcgccgccatttggtctcacaaagacgatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcataaggtaacccttgaagtgaagggtgaaacccagatattgaacttggcagaaaagctaaaagctgggggcattgctcataaactgtggattgaacaaccagaaaacataccaacctgtcttgctacaaaaccttatccaaaatccctggtatcttcatttttcaagaagctaaaactttgtaaatgatgaatttcaagtgtcgtccgtttatgtgatactgacacaagtaggcttagtttcagtgttatggaattgaacctatttgctaatgatgagctactctttgtaatgattaatatttcttgctgaaccctttgacctttgcatgcggttcatcttgatttatattttataatctggtgattctgtccagatgattattggtcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95895" stop="93414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95594" g_stop="95231" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94100" g_stop="93715" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="750" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="751" polyA_stop="765"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E730640" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95594" e_stop="95231"/>
          <exon e_start="94100" e_stop="93715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAGGTGAACCGTCTAATTAGTTGATTTTTGTTTAGTAAGATTCATCATTACTGTTTCGGATTCACCAGATCAGTTAATTATAATACATTTGATCATGTTAAAATATTCATACTATAAGTTAGCTAGAAGGTGATTGGAGGTATATCTCTGTAAAAACCAATACTTAAGCTGAAGAAATTGTAAAGAAAATACTTTTATTGGTTAACTTAGTATATGCTAATAAGATTATGGAACTTGCAACAACTTTAATGATGATGGTTATGTTGACTGCAATAACTGAGTGTGTGCGCCTCGACTATTTCACTGGGTACCTGTTTACCTATTAGATAACTTTGTCCACTAAGGCTTAGTCAGATGGGATTCATAGGAAGGGATTATCTAGTTTTTCTTTTCCTGCTGGAACTTTGACTCTGATCTCCAAGGTTTGTGCCCACTACATTGACTGTTAGGCCATACACAGTGCTAGTGAAGAATGTATTTTAGTTGTTAGATTATTAATTTAGATATCAAGAGGCTGAAAATTCTCATGGTTGCAAGGATAGCAAATGAACGTGATGGGTAAGGTTGTTTGACACGTTGGGTTATGTTAGGAGAAGGCCAAAATGGTGTCACATGTTACAAGTTGTGTCGTTGGTTTCCTGGTGCACTATCTCCTGTGATATTTATTCTCTTAAGCTGTTCAATTTTCAGTTGTATGAAGTTGAAAAGAGCCAGATTGGTGTTCTGTTAGCTCCTTTGTAGTGAATTAGTGATCGCTTAGGTTAGTATGTAAAACATGAATTATGCAGAATTTTACACTGAAGTTGCTTGCTGTGAATTTGGGGTTTATAAGTGCCATTGGACATTTCTAAAGAAGTTCAATATTCTAGTTTACACTATGGTTAACTTATATTCTGCAATGAAGTAAGATTTTTTTTTTTTGAGGAAATGAAGTAAGATTATTTGTAAGAAACTTCCTTTTAATCAGGAATGACGTTGTAAGATTATTTGTAAGCAACTTCCTTGTAATCAGGAATGACGTTCGCATATGTCCACTTCGATGCATTCCAAGTTCTAACTTAGATTAGTCCTTGGTATAGGGATTTTAGAGAAAATCAAAGATTCAATTCAACTTTTTTTTCTTGGCTATGTAGGTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCTGTCCAGATGATTATTGGTCTTA</genome_strand>
        <mrna_strand>CCGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCTGTCCAGATGATTATTGGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E343159" ref_strand="+" ref_description="SGN-E343159 [cTOF-17-D3]">
      <seq>ccagcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttaggaagtgtggttacgcaaggctgccatgccgccgtcgccgccatttggtctcacaaagacgatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcataaggtaacccttgaagtgaagggtgaaacccagatattgaacttggcagaaaagctaaaagctgggggcattgctcataaactgtggattgaacaaccagaaaacataccaacctgtcttgctacaaaaccttatccaaaatccctggtatcttcatttttcaagaagctaaaactttgtaaatgatgaatttcaagtgtcgtccgtttatgtgatactgacacaagtaggcttagtttcagtgttatggaattgaacctatttgctaatgatgagctactctntgtaatgattaatatttcttgctgaaccctttgacctttgcatgcggttcatcttgatttatattttataatctggtgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95895" stop="93437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95595" g_stop="95231" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94100" g_stop="93737" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="729" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E343159" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95595" e_stop="95231"/>
          <exon e_start="94100" e_stop="93737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAGGTGAACCGTCTAATTAGTTGATTTTTGTTTAGTAAGATTCATCATTACTGTTTCGGATTCACCAGATCAGTTAATTATAATACATTTGATCATGTTAAAATATTCATACTATAAGTTAGCTAGAAGGTGATTGGAGGTATATCTCTGTAAAAACCAATACTTAAGCTGAAGAAATTGTAAAGAAAATACTTTTATTGGTTAACTTAGTATATGCTAATAAGATTATGGAACTTGCAACAACTTTAATGATGATGGTTATGTTGACTGCAATAACTGAGTGTGTGCGCCTCGACTATTTCACTGGGTACCTGTTTACCTATTAGATAACTTTGTCCACTAAGGCTTAGTCAGATGGGATTCATAGGAAGGGATTATCTAGTTTTTCTTTTCCTGCTGGAACTTTGACTCTGATCTCCAAGGTTTGTGCCCACTACATTGACTGTTAGGCCATACACAGTGCTAGTGAAGAATGTATTTTAGTTGTTAGATTATTAATTTAGATATCAAGAGGCTGAAAATTCTCATGGTTGCAAGGATAGCAAATGAACGTGATGGGTAAGGTTGTTTGACACGTTGGGTTATGTTAGGAGAAGGCCAAAATGGTGTCACATGTTACAAGTTGTGTCGTTGGTTTCCTGGTGCACTATCTCCTGTGATATTTATTCTCTTAAGCTGTTCAATTTTCAGTTGTATGAAGTTGAAAAGAGCCAGATTGGTGTTCTGTTAGCTCCTTTGTAGTGAATTAGTGATCGCTTAGGTTAGTATGTAAAACATGAATTATGCAGAATTTTACACTGAAGTTGCTTGCTGTGAATTTGGGGTTTATAAGTGCCATTGGACATTTCTAAAGAAGTTCAATATTCTAGTTTACACTATGGTTAACTTATATTCTGCAATGAAGTAAGATTTTTTTTTTTTGAGGAAATGAAGTAAGATTATTTGTAAGAAACTTCCTTTTAATCAGGAATGACGTTGTAAGATTATTTGTAAGCAACTTCCTTGTAATCAGGAATGACGTTCGCATATGTCCACTTCGATGCATTCCAAGTTCTAACTTAGATTAGTCCTTGGTATAGGGATTTTAGAGAAAATCAAAGATTCAATTCAACTTTTTTTTCTTGGCTATGTAGGTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCT</genome_strand>
        <mrna_strand>CCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTNTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E722038" ref_strand="+" ref_description="SGN-E722038 [FC16AA11]">
      <seq>aatcggccgaattgaaagggcaaaaaagcaacttgaaaaaaaaaacagatatgggcactccattcggctctcgttaggcttctctcaacttcacgcatttttcccccagcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaagggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcaatgcaaccacaaccggcagcaatagtacagaggaaagctcgattaccgatacgggggttcagtatgttgttctacggaaagatttgattgatacatggccgttaggaagtggggttacgcaaggctgccatgccgccgtcgccgccatttggtctcacaaaaacaatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcataaggtaacccttgaagtgaagggggaaacccaaatattgaacttggcaaaaaagctaaaagctgggggcattgctcataaactgtggattgaacaaccagaaaacataccaacctgtcttgctacaaaaccttatccaaaatcccgggtatcttcatttttcaagaagctaaaactttgtaaatgatgaatttcaagtgtcgtccgtttatgtgatactgacacaagtaggcttagtttcagtgttatggaattgaacctatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95995" stop="93538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95688" g_stop="95231" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="470" r_length="457" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94100" g_stop="93838" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="733" r_length="263" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E722038" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95688" e_stop="95231"/>
          <exon e_start="94100" e_stop="93838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGCAAAAAAGGAACTTGAAAAAAAAAAACAGATATGGGCACTCCATTCTGCTCTCGTTATGCTTCTCTCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAGGTGAACCGTCTAATTAGTTGATTTTTGTTTAGTAAGATTCATCATTACTGTTTCGGATTCACCAGATCAGTTAATTATAATACATTTGATCATGTTAAAATATTCATACTATAAGTTAGCTAGAAGGTGATTGGAGGTATATCTCTGTAAAAACCAATACTTAAGCTGAAGAAATTGTAAAGAAAATACTTTTATTGGTTAACTTAGTATATGCTAATAAGATTATGGAACTTGCAACAACTTTAATGATGATGGTTATGTTGACTGCAATAACTGAGTGTGTGCGCCTCGACTATTTCACTGGGTACCTGTTTACCTATTAGATAACTTTGTCCACTAAGGCTTAGTCAGATGGGATTCATAGGAAGGGATTATCTAGTTTTTCTTTTCCTGCTGGAACTTTGACTCTGATCTCCAAGGTTTGTGCCCACTACATTGACTGTTAGGCCATACACAGTGCTAGTGAAGAATGTATTTTAGTTGTTAGATTATTAATTTAGATATCAAGAGGCTGAAAATTCTCATGGTTGCAAGGATAGCAAATGAACGTGATGGGTAAGGTTGTTTGACACGTTGGGTTATGTTAGGAGAAGGCCAAAATGGTGTCACATGTTACAAGTTGTGTCGTTGGTTTCCTGGTGCACTATCTCCTGTGATATTTATTCTCTTAAGCTGTTCAATTTTCAGTTGTATGAAGTTGAAAAGAGCCAGATTGGTGTTCTGTTAGCTCCTTTGTAGTGAATTAGTGATCGCTTAGGTTAGTATGTAAAACATGAATTATGCAGAATTTTACACTGAAGTTGCTTGCTGTGAATTTGGGGTTTATAAGTGCCATTGGACATTTCTAAAGAAGTTCAATATTCTAGTTTACACTATGGTTAACTTATATTCTGCAATGAAGTAAGATTTTTTTTTTTTGAGGAAATGAAGTAAGATTATTTGTAAGAAACTTCCTTTTAATCAGGAATGACGTTGTAAGATTATTTGTAAGCAACTTCCTTGTAATCAGGAATGACGTTCGCATATGTCCACTTCGATGCATTCCAAGTTCTAACTTAGATTAGTCCTTGGTATAGGGATTTTAGAGAAAATCAAAGATTCAATTCAACTTTTTTTTCTTGGCTATGTAGGTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGC</genome_strand>
        <mrna_strand>GAAAGGGCAAAAAAGCAACTTG-AAAAAAAAAACAGATATGGGCACTCCATTCGGCTCTCGTTAGGCTTCTCTCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAAGGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCAATGCAACCACAACCGGCAGCAATAGTACAGAGGAAAGCTCGATTACCGATACGGGGGTTCAGTATGTTGTTCTACGGAAAGATTTGATTGATACATGGCCGTTAGGAAGTGGGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAAACAATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTTGAAGTGAAGGGGGAAACCCAAATATTGAACTTGGCAAAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCGGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E295975" ref_strand="+" ref_description="SGN-E295975 [cLET-27-O15]">
      <seq>attcagttaacgttcagcactactttccggcgacggaacgacggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttaggaagtgtggttactcaaggctgccatgccgccgtcgccgccatttggtctcacaaagacgatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcataagggaacccttgaagtgaagggtgaaacccagatattgaacttggcagaaaagctaaaagctgggggcattgctcataaactgtggattgaacaaccagaaaacataccaacctgtcttgctacaaaaccttatccaaaatccctggtatcttcatttttcaagaggctaaaactttgtaaatgatgaatttcaagtggcgtccggttatgtgatactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95878" stop="93582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95578" g_stop="95231" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94100" g_stop="93882" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="567" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E295975" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95578" e_stop="95231"/>
          <exon e_start="94100" e_stop="93882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAGGTGAACCGTCTAATTAGTTGATTTTTGTTTAGTAAGATTCATCATTACTGTTTCGGATTCACCAGATCAGTTAATTATAATACATTTGATCATGTTAAAATATTCATACTATAAGTTAGCTAGAAGGTGATTGGAGGTATATCTCTGTAAAAACCAATACTTAAGCTGAAGAAATTGTAAAGAAAATACTTTTATTGGTTAACTTAGTATATGCTAATAAGATTATGGAACTTGCAACAACTTTAATGATGATGGTTATGTTGACTGCAATAACTGAGTGTGTGCGCCTCGACTATTTCACTGGGTACCTGTTTACCTATTAGATAACTTTGTCCACTAAGGCTTAGTCAGATGGGATTCATAGGAAGGGATTATCTAGTTTTTCTTTTCCTGCTGGAACTTTGACTCTGATCTCCAAGGTTTGTGCCCACTACATTGACTGTTAGGCCATACACAGTGCTAGTGAAGAATGTATTTTAGTTGTTAGATTATTAATTTAGATATCAAGAGGCTGAAAATTCTCATGGTTGCAAGGATAGCAAATGAACGTGATGGGTAAGGTTGTTTGACACGTTGGGTTATGTTAGGAGAAGGCCAAAATGGTGTCACATGTTACAAGTTGTGTCGTTGGTTTCCTGGTGCACTATCTCCTGTGATATTTATTCTCTTAAGCTGTTCAATTTTCAGTTGTATGAAGTTGAAAAGAGCCAGATTGGTGTTCTGTTAGCTCCTTTGTAGTGAATTAGTGATCGCTTAGGTTAGTATGTAAAACATGAATTATGCAGAATTTTACACTGAAGTTGCTTGCTGTGAATTTGGGGTTTATAAGTGCCATTGGACATTTCTAAAGAAGTTCAATATTCTAGTTTACACTATGGTTAACTTATATTCTGCAATGAAGTAAGATTTTTTTTTTTTGAGGAAATGAAGTAAGATTATTTGTAAGAAACTTCCTTTTAATCAGGAATGACGTTGTAAGATTATTTGTAAGCAACTTCCTTGTAATCAGGAATGACGTTCGCATATGTCCACTTCGATGCATTCCAAGTTCTAACTTAGATTAGTCCTTGGTATAGGGATTTTAGAGAAAATCAAAGATTCAATTCAACTTTTTTTTCTTGGCTATGTAGGTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGAC</genome_strand>
        <mrna_strand>ATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGACGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACTCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAGGCTAAAACTTTGTAAATGATGAATTTCAAGTGGCGTCCGGTTATGTGATACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E285743" ref_strand="+" ref_description="SGN-E285743 [cLES-5-I7]">
      <seq>tctgctctcgttatgcttctctcaacttcacgcatttttcccccagcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttaggaagtgtggttacgcaaggctgccatgccgccgtcgccgccatttggtctcacaaagacgatgctgttactcttcaatattgtagcccttccaatatcgattcgatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95937" stop="94934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95637" g_stop="95234" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E285743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95637" e_stop="95234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTCTCGTTATGCTTCTCTCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCAT</genome_strand>
        <mrna_strand>TCTGCTCTCGTTATGCTTCTCTCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E277796" ref_strand="+" ref_description="SGN-E277796 [cLEL-5-G11]">
      <seq>gcacgagcgcatttttcccccagcttagctccggcgattcagttaacgttcagcactactttccggcgacggaacgtcggcgtagtatctcgaatggaatcaacatccatttctccctccggcggctccggcactaccgccgtcagcgccattgctgccggcggcgatgcgaccacaaccggcagcaatagtacagaggagagctcgattaccgatacggtggttcagtatgttgttctacggagagatttgattgatacatggccgttangaaagtgtggttacgcaaggctgccatgccgccgtcgccgccattttggtctcacaaagacgatggctgttactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="95907" stop="94969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95615" g_stop="95269" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E277796" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95615" e_stop="95269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGG-AAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCA-TTTGGTCTCACAAAGACGAT-GCTGTTACTCTTC</genome_strand>
        <mrna_strand>GCAC-GAGCGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTANGAAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTTGGTCTCACAAAGACGATGGCTGTTACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E272312" ref_strand="+" ref_description="SGN-E272312 [cLEM-19-D24]">
      <seq>tgagattattcagagattaccagctctggaggctgctatggggccaattagggctcataaagatgctcttggtgctgttgggggacatattaatcgtgctgttgtccctgcgacggcggtgttaaaagtgtttgatgcaattcatggactagagaagtcgttgtctgatcctcaatcggacctcccggggtaccttggtgtgcttaagaggcttgaagaggcattaagatttttaggggagaattgtgagatggcaattcagtggttggcagatattgtagagtatctagaggatcatgcagttgctgatgacaggtttactttaagtatgaaggaggcattgacttctcttagggaattgcacagtggggaggaaaagggtcggcttgatggagggcttcttgaggttgcgttggacagattggaaagtgaatttcgacggctcttggttgaaaatactattccactgccaatgtctgatccagccttgccaggtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="100482" stop="101581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100782" g_stop="101281" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E272312" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100782" e_stop="101281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTATTCAGAGATTACCAGCTTTGGAGGCTGCTATAAGGCCAATTAGGGCTCAGAAAGATGCTCTTGGTGCTGTTGGGGGACATATTAATCGTGCTGTTGTCCCTGCGACGGCGGTGTTAAAAGTGTTTGATGCAATTCATGGACTAGAGAAGTCGTTGTCTGATCCTCAATCGGACCTCCCGGGGTACCTTGGTGTGCTTAAGAGGCTTGAAGAGGCATTAAGATTTTTAGGGGAGAATTGTGAGATGGCAATTCAGTGGTTGGCAGATATTGTAGAGTATCTAGAGGATCATGCAGTTGCTGATGACAGGTTTACTTTAAGTATGAAGGAGGCATTGACTTCTCTTAGGGAATTGCACAGTGGGGAGGAAAAGGGTCGGCTTGATGGAGGGCTTCTTGAGGTTGCGTTGGACAGATTGGAAAGTGAATTTCGACGGCTCTTGGTTGAAAATACTATTCCACTGCCAATGTCTGATCCAGCCTTGCCAGGTGAAC</genome_strand>
        <mrna_strand>TGAGATTATTCAGAGATTACCAGCTCTGGAGGCTGCTATGGGGCCAATTAGGGCTCATAAAGATGCTCTTGGTGCTGTTGGGGGACATATTAATCGTGCTGTTGTCCCTGCGACGGCGGTGTTAAAAGTGTTTGATGCAATTCATGGACTAGAGAAGTCGTTGTCTGATCCTCAATCGGACCTCCCGGGGTACCTTGGTGTGCTTAAGAGGCTTGAAGAGGCATTAAGATTTTTAGGGGAGAATTGTGAGATGGCAATTCAGTGGTTGGCAGATATTGTAGAGTATCTAGAGGATCATGCAGTTGCTGATGACAGGTTTACTTTAAGTATGAAGGAGGCATTGACTTCTCTTAGGGAATTGCACAGTGGGGAGGAAAAGGGTCGGCTTGATGGAGGGCTTCTTGAGGTTGCGTTGGACAGATTGGAAAGTGAATTTCGACGGCTCTTGGTTGAAAATACTATTCCACTGCCAATGTCTGATCCAGCCTTGCCAGGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E213052" ref_strand="+" ref_description="SGN-E213052 [cLEC-72-J23]">
      <seq>aagatgctcttggtgctgttgggggacatattaatcgtgctgttgtccctgcgacggcggtgttaaaagtgtttgatgcaattcatggactagagaagtcgttgtctgatcctcaatcggacctcccggggtaccttggtgtgcttaagaggcttgaagaggcattaagatttttaggggagaattgtgagatggcnnaattcagtgggttgggcagatattgtagagtatctagaggatcatgcagttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="100541" stop="101392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100841" g_stop="101092" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E213052" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100841" e_stop="101092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCTCTTGGTGCTGTTGGGGGACATATTAATCGTGCTGTTGTCCCTGCGACGGCGGTGTTAAAAGTGTTTGATGCAATTCATGGACTAGAGAAGTCGTTGTCTGATCCTCAATCGGACCTCCCGGGGTACCTTGGTGTGCTTAAGAGGCTTGAAGAGGCATTAAGATTTTTAGGGGAGAATTGTGAGATGGC--AATTCAGT-GGTT-GGCAGATATTGTAGAGTATCTAGAGGATCATGCAGTTGCTGATG</genome_strand>
        <mrna_strand>AAGATGCTCTTGGTGCTGTTGGGGGACATATTAATCGTGCTGTTGTCCCTGCGACGGCGGTGTTAAAAGTGTTTGATGCAATTCATGGACTAGAGAAGTCGTTGTCTGATCCTCAATCGGACCTCCCGGGGTACCTTGGTGTGCTTAAGAGGCTTGAAGAGGCATTAAGATTTTTAGGGGAGAATTGTGAGATGGCNNAATTCAGTGGGTTGGGCAGATATTGTAGAGTATCTAGAGGATCATGCAGTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E276795" ref_strand="+" ref_description="SGN-E276795 [cLEN-14-O19]">
      <seq>agctgttggacatatttgcatctttaaacaagttaagattggatttcaatcggctctttggtggaactgcgtgtttggaaatacaaaatttgactagggatttgatcaagagtgtgattgaaggtgctagtgagatcttttgggaacttctggttcaagctgagttgcaaaggcaaatgccaccttcacctgatggtactgttccgaaacttatcattttcatcaccgactattggaataagttgctcggggatgattataaccctatactcacccaaggtctgattattgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="101408" stop="102303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101708" g_stop="102003" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E276795" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101708" e_stop="102003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTTGGACATATTTGCATCTTTAAACAAGTTAAGATTGGATTTCAATCGGCTCTTTGGTGGAACTGCGTGTTTGGAAATACAAAATTTGACTAGGGATTTGATCAAGAGTGTGATTGAAGGTGCTAGTGAGATCTTTTGGGAACTTCTGGTTCAAGTTGAGTTGCAAAGGCAAATGCCACCTCCACCTGATGGTACTGTTCCGAAACTTATCATTTTCATCACCGACTATTGCAATAAGTTGCTCGGGGATGATTATAAGTCTATCCTCACCCAAGTTCTGATTATTGAAAGA</genome_strand>
        <mrna_strand>AGCTGTTGGACATATTTGCATCTTTAAACAAGTTAAGATTGGATTTCAATCGGCTCTTTGGTGGAACTGCGTGTTTGGAAATACAAAATTTGACTAGGGATTTGATCAAGAGTGTGATTGAAGGTGCTAGTGAGATCTTTTGGGAACTTCTGGTTCAAGCTGAGTTGCAAAGGCAAATGCCACCTTCACCTGATGGTACTGTTCCGAAACTTATCATTTTCATCACCGACTATTGGAATAAGTTGCTCGGGGATGATTATAACCCTATACTCACCCAAGGTCTGATTATTGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E745538" ref_strand="+" ref_description="SGN-E745538 [GI|47105916]">
      <seq>atcatgagtagaaccaaatggctgttttatcaaaaatgaatgaaagttttgctgttgaagaagcagcttccgccggtttgaaatcaatggagaatttaatccgattggtttctcatgaaccggttcaggctgattgccgtgaaatggctgattttacggtttcgaagttcaaaaaggtgatttcaattttggaccggaccggtcatgctcggttccggcgaggaccggttcaggctcaggctccggctccggttcaggttagagctccggttcgtggtccggtttatcctgattcgtttacttcgttgtctcttgctccgtcgttaagctttgctacggcgaaggagagacttgctccgtcgttaagctttgcttcggcgaaggagagaccggtggtgcaggtgcagacggcgttgacgcttgacttttcgaagctgaatgttaaccgtccgatcgggaattcaagtgcttttactgcttttactgtgaaatctaaggaggttttaatggcggatccgacgccgacgaactcgtcgtcgtttatgtcgacgattaccggcgaagcaactgtatctaatggtaagcaagtttcttcttctatgttgttgcttccgccacaggctgtgaattttccgaccaccggaaaacgttgccgcgagcatgaacaatctgatgctatctccggcagcaaatccaccggctccggcaagtgtcactgcaaaaagaggaaagctaaggatcggaaagtgattaggattccggcgataagtacgagggtggctgatataccgggagacgagttttcatggaggaaatacgggcaaaagccgatcaagggttcaaaatacccaaggggttattacaagtgtagcagcttacgtggatgtccagcaaggaaacacgtggagcgcgcgatggacgatccaacgatgctgattgtgacttatgaagatgaacattgtcataatccagttgctgcgatgcatgggaacagttctcaaatggtgaattttgggttaatggaaaagaagtagggggtgaaatgaagatagaggagagttgtagggtgattttgtagtttggaatagttggggggttgaagttatatttgggaaaagttataagggttaaaagagtagagagtaggaagttgtgggaattggtttgttatgtaaatttggaaagattttaggggttgaaagagaaaaaaaaagaaaagtttcgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="109552" stop="107376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109252" g_stop="108526" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108525" i_stop="108354" i_length="172">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108353" g_stop="108228" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="853" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108227" i_stop="108050" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108049" g_stop="107677" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="1226" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107676" i_stop="107573" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107572" g_stop="107554" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1227" r_stop="1245" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E745538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109252" e_stop="108526"/>
          <exon e_start="108353" e_stop="108228"/>
          <exon e_start="108049" e_stop="107677"/>
          <exon e_start="107572" e_stop="107554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAGGTACTTCTCTCGTTTTTCCGTTTATTTCGACTATAAATAGCGCGTGATATCCACGCTCCTTGTAGCGCTTTTTCCTCATCGTTGTTTGACTTTCATAGCATTTACGTTTTTTTTGAAGTAAGGTCTCGAGAGGATAATGTATGTAATTTTTATTCTATTTTATGAAAAACAGGAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAGGTAATTACAATGTACCTATCAATCACGACCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTAAATCAATTAGATGAAGGACTAACGATTATTTTTACGTTCGATTAGGGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCAATTTTTGACTCCTTTTACCTTTTTAATTTTGTTACTCCTATGATTAGCATGAAAATATATTTAAGGATATCTAAGAAAAAAGAAAAAATTTAAATTAATCTAAGAAAAACAAATAAAAATTAA</genome_strand>
        <mrna_strand>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAG............................................................................................................................................................................GAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAG..................................................................................................................................................................................GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCA........................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E356630" ref_strand="-" ref_description="SGN-E356630 [cTOS-21-D14]">
      <seq>tttttttttttgcgaaacttttctttttttttctctttcaacccctaaaatctttccaaatttacataacaaaccaattcccacaacttcctactctctactcttttaacccttataacttttcccaaatataacttcaaccccccaactattccaaactacaaaatcaccctacaactctcctctatcttcatttcaccccctacttcttttccattaacccaaaattcaccatttgagaactgttcccatgcatcgcagcaactggattatgacaatgttcatcttcataagtcacaatcagcatcgttggatcgtccatcgcgcgctccacgtgtttccttgctggacatccacgtaagctgctacacttgtaataaccccttgggtattttgaacccttgatcggcttttgcccgtatttcctccatgaaaactcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="107376" stop="108587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107667" g_stop="108039" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108040" i_stop="108212" i_length="173">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108213" g_stop="108287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="443" r_length="70" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E356630" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356630" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107667" e_stop="108039"/>
          <exon e_start="108213" e_stop="108287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAAAAATTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTTGTAATAACCCCTAATCGAACGTAAAAATAATCGTTAGTCCTTCATCTAATTGATTTAAACTAAAATTAACGATCGTGATTGATAGGTACATTGTAATTACAAACTAAAATTAACGATCGTGATTGATAGGTACATTGTAATTACAAACTAAAATTAACGGTCGTGATTGATAGGTACATTGTAATTACCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTT.............................................................................................................................................................................GTA-A---TAA-CCCCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E746736" ref_strand="+" ref_description="SGN-E746736 [GI|25140459]">
      <seq>gatcaagggttcaaaatacccaaggggttattacaagtgtagcagcttacgtggatgtccagcaaggaaacacgtggagcgcgcgatggacgatccaacgatgctgattgtgacttatgaagatgaacattgtcataatccagttgctgcgatgcatgggaacagttctcaaatggtgaattttgggttaatggaaaagaagtagggggtgaaatgaagatagaggagagttgtagggtgattttgtagtttggaatagttggggggttgaagttatatttgggaaaagttataagggttaaaagagtagagagtaggaagttgtgggaattggtttgttatgtaaatttggaaagattttaggggttgaaagagaaaaaaaaagaaaagtttcgcccnnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="108551" stop="107378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108251" g_stop="108228" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108227" i_stop="108050" i_length="178">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108049" g_stop="107680" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="394" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="424"/>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E746736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108251" e_stop="108228"/>
          <exon e_start="108049" e_stop="107680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGGGTTCAAAATACCCAAGGTAATTACAATGTACCTATCAATCACGACCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTAAATCAATTAGATGAAGGACTAACGATTATTTTTACGTTCGATTAGGGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTC</genome_strand>
        <mrna_strand>GATCAAGGGTTCAAAATACCCAAG..................................................................................................................................................................................GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E211928" ref_strand="-" ref_description="SGN-E211928 [cLEC-66-E6]">
      <seq>gaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatttttgatagttaccttgaacatgtagttgttgtttacatgtaaacattgaaaatgttgtacaactcttttttgtcttgaaatgcttagggtatttcttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="117383" stop="115389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117083" g_stop="116948" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116294" g_stop="116151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="280" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116052" g_stop="115681" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="652" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E211928" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117083" e_stop="116948"/>
          <exon e_start="116294" e_stop="116151"/>
          <exon e_start="116052" e_stop="115681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCATCTGTCTA</genome_strand>
        <mrna_strand>GAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E203675" ref_strand="+" ref_description="SGN-E203675 [cLEC-15-D23]">
      <seq>tttttttttgaaaagaaataccctaagcatttcaagacaaaaaagagttgtacaacattttcaatgtttacatgtaaacaacaactacatgttcaaggtaactatcaaaaattgattgaaaaacaaaatcatgtagttttctcttcataacttgtgaaggaagaaaattataaatattgaactctatggaaccaactagcaatctttttatttacgatgactatcgatatcggacattatcttaggcaatttgttcttcttctgttgatatttagctaatgaataccacaccccaccagctgtgttgatcactaaaccagtgacattcaaagcatgtacctctactcctcccaacaggacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="115389" stop="116345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115681" g_stop="116045" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E203675" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115681" e_stop="116045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGATGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E298117" ref_strand="+" ref_description="SGN-E298117 [cLEW-9-A13]">
      <seq>gagttgtgcaacattctcaatgtttacatgtaaacaacaactacttgttcaaggtaactatcaaaaattgattgaaaaacaaaatcatgtagttttctcttcatgacttgtgaaggaagaaaattttaaatgttgaactctatggaaccaactagcaatctttttatttacgaggactatcgatttcggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="+" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="115425" stop="116217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115725" g_stop="115917" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="+" ref_id="SGN-E298117" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115725" e_stop="115917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACAT</genome_strand>
        <mrna_strand>GAGTTGTGCAACATTCTCAATGTTTACATGTAAACAACAACTACTTGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATGACTTGTGAAGGAAGAAAATTTTAAATGTTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGAGGACTATCGATTTCGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E389486" ref_strand="-" ref_description="SGN-E389486 [TUS-4-C24]">
      <seq>cactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatttttgatagttaccttgaacatgtagttgttgttacatgtaaacatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="117625" stop="115436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117325" g_stop="117219" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117106" g_stop="116948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="266" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116294" g_stop="116151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="410" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116052" g_stop="115736" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="725" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E389486" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117325" e_stop="117219"/>
          <exon e_start="117106" e_stop="116948"/>
          <exon e_start="116294" e_stop="116151"/>
          <exon e_start="116052" e_stop="115736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATG</genome_strand>
        <mrna_strand>CACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTG-TTACATGTAAACA-TGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E550101" ref_strand="-" ref_description="SGN-E550101 [TUS-5-C36]">
      <seq>cggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatgtttgatagttaccttgaacatgtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="118934" stop="115463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118634" g_stop="118610" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118609" i_stop="117330" i_length="1280">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117329" g_stop="117219" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="136" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117106" g_stop="116948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="295" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116294" g_stop="116151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116052" g_stop="115763" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="729" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E550101" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550101" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118634" e_stop="118610"/>
          <exon e_start="117329" e_stop="117219"/>
          <exon e_start="117106" e_stop="116948"/>
          <exon e_start="116294" e_stop="116151"/>
          <exon e_start="116052" e_stop="115763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTT</genome_strand>
        <mrna_strand>CGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATGTTTGATAGTTACCTTGAACATGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E389749" ref_strand="+" ref_description="SGN-E389749 [TUS-4-C24]">
      <seq>cggattcgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacactgggtgggggtgtggtattcattagctnaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="119033" stop="115546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118733" g_stop="118610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118609" i_stop="117330" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117329" g_stop="117219" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="235" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117106" g_stop="116948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="394" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116294" g_stop="116151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="538" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116052" g_stop="115846" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="746" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E389749" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118733" e_stop="118610"/>
          <exon e_start="117329" e_stop="117219"/>
          <exon e_start="117106" e_stop="116948"/>
          <exon e_start="116294" e_stop="116151"/>
          <exon e_start="116052" e_stop="115846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGT-GGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATT</genome_strand>
        <mrna_strand>CGGATTCGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACACTGGGTGGGGGTGTGGTATTCATTAGCTNAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E550302" ref_strand="+" ref_description="SGN-E550302 [TUS-5-C36]">
      <seq>cggattcgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacgctggtggggtgtggtattcattagcntaatatcnacagaagaagaacaattgcctaagatatgtccgatatcgatagtcatcgtaaataaaagattgctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="119033" stop="115575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118733" g_stop="118610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118609" i_stop="117330" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117329" g_stop="117219" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="235" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117106" g_stop="116948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="394" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116294" g_stop="116151" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="538" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116052" g_stop="115875" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="712" r_length="174" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E550302" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118733" e_stop="118610"/>
          <exon e_start="117329" e_stop="117219"/>
          <exon e_start="117106" e_stop="116948"/>
          <exon e_start="116294" e_stop="116151"/>
          <exon e_start="116052" e_stop="115875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGT</genome_strand>
        <mrna_strand>CGGATTCGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACAC-GCTGGTGGGGTGTGGTATTCATTAGCNTAATATCNACAGAAGAAGAAC-AATTGCCTAAGAT-ATGTCCGATATCGATAGTCATCGTAAAT-AAAAGATTGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E231740" ref_strand="+" ref_description="SGN-E231740 [cLED-4-D20]">
      <seq>ggatttgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgtgttcttccagaccatgtaccttgagttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagatacttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgctaactcggctttaactaccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="119032" stop="115883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118732" g_stop="118610" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118609" i_stop="117330" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117329" g_stop="117219" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="234" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117106" g_stop="116948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="393" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116294" g_stop="116183" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="505" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E231740" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118732" e_stop="118610"/>
          <exon e_start="117329" e_stop="117219"/>
          <exon e_start="117106" e_stop="116948"/>
          <exon e_start="116294" e_stop="116183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAA</genome_strand>
        <mrna_strand>GGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTGTTCTTCCAG................................................................................................................ACCATGTACCTTGAGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGATACTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGCTAACTCGGCTTTAACTACCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E261669" ref_strand="+" ref_description="SGN-E261669 [cLEG-61-C20]">
      <seq>ttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttcttatatgggtgtttttcattttctaatttcgtgcttaagttatagagatttcgataaattggtgcagaagatttgtttttgagttgattgaaaggtgtattgagctcaattgagcaatcttaagcagagattgatttggttagcagatttggagtgcatgtgatattttttttggcttttatatcaatctgggtgntgttctttttataatttcttgattcaattgcagattttttttttgtgtaaataaaggactgtcaatgaagtaagtgataagctgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="121071" stop="119791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120771" g_stop="120091" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E261669" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120771" e_stop="120091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGTTGTTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</genome_strand>
        <mrna_strand>TTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGGTGNTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E311838" ref_strand="+" ref_description="SGN-E311838 [cLEZ-9-L16]">
      <seq>ttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttcttatatgggtgtttttcattttctaatttcgtgcttaagttatagagatttcgataaattggtgcagaagatttgtttttgagttgattgaaaggtgtattgagctcaattgagcaatcttaagcagagattgatttggttagcacatttggagtgcatgtgatattttttttggctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="121039" stop="119894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120739" g_stop="120194" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E311838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120739" e_stop="120194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTA</genome_strand>
        <mrna_strand>TTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCACATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E324193" ref_strand="+" ref_description="SGN-E324193 [cTOC-4-H6]">
      <seq>tttttctttgttagctgccgataaaaatggcctatggtcatcatcaacaaacaaaatatattaataataataacaaaaagatccctttttttttacaccaaattccaagattttttttttttaacactctctacactacagactgcttgatccaaaaaaaataaatatttttttcaattgttatatactcagaaaaatcatgtaatcacgagaatttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="121286" stop="120073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120986" g_stop="120373" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E324193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120986" e_stop="120373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTT</genome_strand>
        <mrna_strand>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cJXte2/sgn_ests_tomato" ref_id="SGN-E330998" ref_strand="+" ref_description="SGN-E330998 [cTOD-10-N14]">
      <seq>aacaaacaaaatatattaataataataacaaaaagatccctttttttttacaccaaattccaagattttttttttttaacactctctacactacagactgcttgatccaaaaaaaataaatatttttttcaattgttatatactcagaaaaatcatgtaatcacgagaatttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattntagtgtgttaagatttgattttgagttaattgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0071M19-UdQJg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0071M19.1" temp_strand="-" temp_description="C12HBa0071M19.1  AC209661.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0071M19 upload_account_name:italy">
        <position start="121241" stop="120113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120941" g_stop="120413" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0071M19.1" gen_strand="-" ref_id="SGN-E330998" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0071M19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120941" e_stop="120413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGC</genome_strand>
        <mrna_strand>AACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTNTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>196</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="809" PGL_stop="3857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="809" e_stop="1275"/>
            <exon e_start="2360" e_stop="2462"/>
            <exon e_start="2560" e_stop="3857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="809" e_stop="1275" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.870">
            <gDNA_intron_boundary i_start="1276" i_stop="2359" i_length="1084"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2360" e_stop="2462" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="2560" e_stop="3857" e_length="1298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="809" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="810" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="840" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="840" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="854" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1007" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="3027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1035" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1174" stop="1275"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2654" stop="3130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2749" stop="3355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2806" stop="3445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2861" stop="3635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3283" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3301" stop="3857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAACTACAAGTGTCTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAG : ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG : CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTGTTCAACAGCCATTGCAATGAACACAACCAACTTCATAAGGACTCACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTTTTCATGTAAAATAGGATTCAGGTTTATGTGCTTTTCATACATATTGCTCCCTCCGTCCCAATTTATGTGACACTGTTTGATTTGACACTTAATAAGTGAATCTCATATTATCTCTGCTATGCTTGA</gDNA_template>
            <first_frame> Q  K  L  Q  V  S  L  M  H  P  T  P  F  S  S  Q  K  S  L  T  I  M  A  L  Q  Q  P  F  L  S  E  L  L  L  H  S  S  S  I  R  T  T  L  P  K  S  S  L  F  S  L  Q  I  P  Q  R  F  N  L  Y  L  Q  N  K  Q  I  K  K  Q  G  T  S  C  Y  A  I  A  E  N  L  E  A  E  D  Q  S  L  I  L  E  N  S  S  L  D  E  L  R  G  Q  R  E  I  V  G  Y  D  W  T  E  E  W  Y  P  L  Y  L  T  K  N  V  P  N  D  A  P  L  G  L  T  V  F  D  K  Q  V  V  L  Y  K  D  G  S  G  E  L  R  C  F  E  D  R  C  P  H  R :   L  A  K  L  S  E  G  Q  L  Y  D  G  K  L  E  C  L  Y  H  G  W  Q  F  D  G  D  G  K  C  V  K  I  P  Q  :  L  P  E  N  A  K  I  P  R  S  A  C  T  K  T  Y  E  I  R  D  S  Q  G  V  V  W  I  W  M  S  H  G  T  P  P  N  I  N  K  I  P  W  F  E  N  F  E  R  K  G  F  R  D  I  S  T  I  H  E  L  P  Y  D  H  S  I  L  L  E  N  L  M  D  P  A  H  V  P  I  S  H  D  R  T  D  F  T  A  K  R  E  D  A  G  P  L  F  F  E  V  T  E  R  T  N  R  G  F  A  G  W  W  G  K  E  R  D  Q  G  K  A  N  Y  T  P  N  F  L  R  F  E  S  P  C  V  L  Q  N  N  R  E  I  V  D  E  S  G  E  K  H  Y  F  S  G  L  F  L  C  R  P  S  G  Q  G  K  S  M  L  I  V  R  F  G  N  T  R  K  R  T  G  I  L  K  F  I  P  N  W  F  L  H  Q  N  A  S  K  V  F  E  Q  D  M  G  F  L  S  S  Q  N  E  I  L  M  K  E  K  V  P  T  K  K  L  Y  L  N  L  K  S  S  D  T  W  V  A  E  Y  R  K  W  M  D  K  V  G  H  G  M  P  Y  H  F  G  H  S  T  I  F  L  P  Q  Q  P  A  V  V  E  H  A  P  A  G  F  V  A  N  F  S  A  A  Q  P  A  K  G  G  I  G  G  I  Y  A  P  N  P  A  N  R  Y  F  R  H  V  V  H  C  R  D  C  S  N  V  V  K  A  F  E  T  W  K  K  A  L  S  V  I  A  L  V  S  T  A  F  A  I  L  V  S  G  R  Q  W  K  A  L  L  L  L  S  T  S  L  C  L  A  G  A  Y  A  C  S  T  A  I  A  M  N  T  T  N  F  I  R  T  H  R  R  L  *  K  V  C  I  *  *  L  Y  S  Y  *  C  F  S  C  K  I  G  F  R  F  M  C  F  S  Y  I  L  L  P  P  S  Q  F  M  *  H  C  L  I  *  H  L  I  S  E  S  H  I  I  S  A  M  L   </first_frame>
            <second_frame>  K  N  Y  K  C  L  *  C  I  Q  L  L  F  P  P  K  N  H  S  Q  *  W  L  Y  N  N  H  F  Y  L  N  Y  Y  S  T  H  L  Q  L  E  Q  H  S  P  K  V  H  F  F  L  Y  K  Y  L  K  D  S  I  F  I  F  K  I  S  K  S  R  N  K  E  Q  V  V  M  Q  L  L  R  I  L  K  L  R  I  K  V  *  F  W  K  I  Q  V  *  M  S  *  G  D  K  G  K  L  L  V  M  I  G  L  K  N  G  I  L  C  I  *  P  R  M  Y  L  M  M  H  L  *  V  L  L  S  L  I  N  K  L  F  C  I  K  M  E  V  V  N  L  D  A  L  K  I  D  V  H  I   : D  W  P  N  S  P  K  G  N  C  M  M  A  N  W  N  A  C  I  T  V  G  S  L  T  E  M  V  N  V  S  R  Y  H  S :   Y  L  K  M  L  K  F  L  D  Q  L  V  R  R  H  M  K  F  G  I  P  K  E  *  S  G  Y  G  C  L  M  E  H  H  L  I  L  T  K  S  P  G  L  K  I  L  R  G  K  D  F  E  T  F  L  L  F  T  S  S  L  M  I  T  L  F  F  S  K  T  L  W  I  L  L  M  S  R  Y  H  T  I  G  Q  I  L  R  R  K  G  K  M  L  D  H  C  F  S  R  *  Q  K  G  L  T  E  G  L  Q  G  G  G  V  K  K  E  I  K  A  K  Q  T  I  L  R  T  S  Y  V  L  N  L  L  V  F  F  R  I  I  E  K  L  L  M  R  V  G  R  S  I  T  F  R  V  F  F  F  V  D  H  L  D  K  G  N  R  C  L  L  F  G  L  G  I  Q  E  N  E  P  G  Y  L  N  L  S  Q  T  G  S  C  I  R  M  Q  A  R  F  S  S  K  I  W  G  S  F  R  P  K  T  K  S  *  *  K  K  R  F  Q  Q  R  N  Y  T  *  T  L  S  R  R  I  H  G  *  L  N  T  G  S  G  W  T  K  W  G  T  E  C  L  I  I  S  V  T  A  P  F  S  C  L  N  N  L  L  S  L  S  T  P  L  L  V  S  L  P  I  F  Q  L  L  S  Q  L  K  E  E  S  V  E  Y  M  L  R  T  L  P  T  D  T  S  D  M  L  Y  I  A  G  I  A  A  T  L  L  K  L  S  R  L  G  K  R  P  S  L  L  *  L  S  C  Q  L  H  S  R  F  *  C  L  E  D  N  G  R  P  C  F  C  F  R  R  R  Y  V  *  L  V  H  M  L  V  Q  Q  P  L  Q  *  T  Q  P  T  S  *  G  L  T  E  D  C  K  K  Y  V  Y  N  S  Y  I  H  I  D  V  F  H  V  K  *  D  S  G  L  C  A  F  H  T  Y  C  S  L  R  P  N  L  C  D  T  V  *  F  D  T  *  *  V  N  L  I  L  S  L  L  C  L  </second_frame>
            <third_frame>   K  T  T  S  V  S  N  A  S  N  S  F  F  L  P  K  I  T  H  N  N  G  F  T  T  T  I  S  I  *  I  T  T  P  L  I  F  N  *  N  N  T  P  Q  K  F  T  F  F  S  T  N  T  S  K  I  Q  S  L  S  S  K  *  A  N  Q  E  T  R  N  K  L  L  C  N  C  *  E  S  *  S  *  G  S  K  F  D  F  G  K  F  K  F  R  *  V  E  G  T  K  G  N  C  W  L  *  L  D  *  R  M  V  S  F  V  F  N  Q  E  C  T  *  *  C  T  F  R  S  Y  C  L  *  *  T  S  C  F  V  *  R  W  K  W  *  T  *  M  L  *  R  *  M  S  T  *  :  I  G  Q  T  L  R  R  A  T  V  *  W  Q  T  G  M  L  V  S  R  L  A  V  *  R  R  W  *  M  C  Q  D  T  T   : A  T  *  K  C  *  N  S  S  I  S  L  Y  E  D  I  *  N  S  G  F  P  R  S  S  L  D  M  D  V  S  W  N  T  T  *  Y  *  Q  N  P  L  V  *  K  F  *  E  E  R  I  S  R  H  F  Y  Y  S  R  A  P  L  *  S  L  Y  S  S  R  K  P  Y  G  S  C  S  C  P  D  I  T  R  *  D  R  F  Y  G  E  K  G  R  C  W  T  T  V  F  R  G  D  R  K  D  *  P  R  V  C  R  V  V  G  *  R  K  R  S  R  Q  S  K  L  Y  S  E  L  L  T  F  *  I  S  L  C  S  S  E  *  *  R  N  C  *  *  E  W  G  E  A  L  L  F  G  S  F  S  L  *  T  I  W  T  R  E  I  D  A  Y  C  S  V  W  E  Y  K  K  T  N  R  D  T  *  I  Y  P  K  L  V  L  A  S  E  C  K  Q  G  F  R  A  R  Y  G  V  P  F  V  P  K  R  N  P  N  E  R  K  G  S  N  K  E  T  I  L  E  P  *  V  V  G  Y  M  G  S  *  I  Q  E  V  D  G  Q  S  G  A  R  N  A  L  S  F  R  S  Q  H  H  F  P  A  S  T  T  C  C  R  *  A  R  P  C  W  F  R  C  Q  F  F  S  C  S  A  S  *  R  R  N  R  W  N  I  C  S  E  P  C  Q  Q  I  L  Q  T  C  C  T  L  Q  G  L  Q  Q  R  C  *  S  F  R  D  L  E  K  G  P  L  C  Y  S  S  R  V  N  C  I  R  D  S  S  V  W  K  T  M  E  G  L  A  F  A  F  D  V  A  M  F  S  W  C  I  C  L  F  N  S  H  C  N  E  H  N  Q  L  H  K  D  S  Q  K  I  V  K  S  M  Y  I  I  A  I  F  I  L  M  F  F  M  *  N  R  I  Q  V  Y  V  L  F  I  H  I  A  P  S  V  P  I  Y  V  T  L  F  D  L  T  L  N  K  *  I  S  Y  Y  L  C  Y  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="809" stop="1275"/>
                    <exon start="2360" stop="2462"/>
                    <exon start="2560" stop="3693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1701</number_coding_nucleotides>
                  <number_encoded_amino_acids>567</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKLQVSLMHPTPFSSQKSLTIMALQQPFLSELLLHSSSIRTTLPKSSLFSLQIPQRFNLYLQNKQIKKQGTSCYAIAENLEAEDQSLILENSSLDELRGQREIVGYDWTEEWYPLYLTKNVPNDAPLGLTVFDKQVVLYKDGSGELRCFEDRCPHRLAKLSEGQLYDGKLECLYHGWQFDGDGKCVKIPQLPENAKIPRSACTKTYEIRDSQGVVWIWMSHGTPPNINKIPWFENFERKGFRDISTIHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAGPLFFEVTERTNRGFAGWWGKERDQGKANYTPNFLRFESPCVLQNNREIVDESGEKHYFSGLFLCRPSGQGKSMLIVRFGNTRKRTGILKFIPNWFLHQNASKVFEQDMGFLSSQNEILMKEKVPTKKLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTIFLPQQPAVVEHAPAGFVANFSAAQPAKGGIGGIYAPNPANRYFRHVVHCRDCSNVVKAFETWKKALSVIALVSTAFAILVSGRQWKALLLLSTSLCLAGAYACSTAIAMNTTNFIRTHRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="835" e_stop="1143"/>
            <exon e_start="2360" e_stop="2462"/>
            <exon e_start="2560" e_stop="3857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.870" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="835" e_stop="1143" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.870">
            <gDNA_intron_boundary i_start="1144" i_stop="2359" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2360" e_stop="2462" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="2463" i_stop="2559" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="2560" e_stop="3857" e_length="1298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="835" stop="1143"/>
              <exon start="2360" stop="2462"/>
              <exon start="2560" stop="2831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2654" stop="3130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2749" stop="3355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2806" stop="3445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2861" stop="3635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3068" stop="3481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3283" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3301" stop="3857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATG : ATTGGCCAAACTCTCCGAAGGGCAACTGTATGATGGCAAACTGGAATGCTTGTATCACGGTTGGCAGTTTGACGGAGATGGTAAATGTGTCAAGATACCACAG : CTACCTGAAAATGCTAAAATTCCTCGATCAGCTTGTACGAAGACATATGAAATTCGGGATTCCCAAGGAGTAGTCTGGATATGGATGTCTCATGGAACACCACCTAATATTAACAAAATCCCCTGGTTTGAAAATTTTGAGAGGAAAGGATTTCGAGACATTTCTACTATTCACGAGCTCCCTTATGATCACTCTATTCTTCTCGAAAACCTTATGGATCCTGCTCATGTCCCGATATCACACGATAGGACAGATTTTACGGCGAAAAGGGAAGATGCTGGACCACTGTTTTTCGAGGTGACAGAAAGGACTAACCGAGGGTTTGCAGGGTGGTGGGGTAAAGAAAGAGATCAAGGCAAAGCAAACTATACTCCGAACTTCTTACGTTTTGAATCTCCTTGTGTTCTTCAGAATAATAGAGAAATTGTTGATGAGAGTGGGGAGAAGCATTACTTTTCGGGTCTTTTTCTTTGTAGACCATCTGGACAAGGGAAATCGATGCTTATTGTTCGGTTTGGGAATACAAGAAAACGAACCGGGATACTTAAATTTATCCCAAACTGGTTCTTGCATCAGAATGCAAGCAAGGTTTTCGAGCAAGATATGGGGTTCCTTTCGTCCCAAAACGAAATCCTAATGAAAGAAAAGGTTCCAACAAAGAAACTATACTTGAACCTTAAGTCGTCGGATACATGGGTAGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCACGGAATGCCTTATCATTTCGGTCACAGCACCATTTTCCTGCCTCAACAACCTGCTGTCGTTGAGCACGCCCCTGCTGGTTTCGTTGCCAATTTTTCAGCTGCTCAGCCAGCTAAAGGAGGAATCGGTGGAATATATGCTCCGAACCCTGCCAACAGATACTTCAGACATGTTGTACATTGCAGGGATTGCAGCAACGTTGTTAAAGCTTTCGAGACTTGGAAAAAGGCCCTCTCTGTTATAGCTCTCGTGTCAACTGCATTCGCGATTCTAGTGTCTGGAAGACAATGGAAGGCCTTGCTTTTGCTTTCGACGTCGCTATGTTTAGCTGGTGCATATGCTTGTTCAACAGCCATTGCAATGAACACAACCAACTTCATAAGGACTCACAGAAGATTGTAAAAAGTATGTATATAATAGCTATATTCATATTGATGTTTTTCATGTAAAATAGGATTCAGGTTTATGTGCTTTTCATACATATTGCTCCCTCCGTCCCAATTTATGTGACACTGTTTGATTTGACACTTAATAAGTGAATCTCATATTATCTCTGCTATGCTTGA</gDNA_template>
            <first_frame> S  N  S  F  F  L  P  K  I  T  H  N  N  G  F  T  T  T  I  S  I  *  I  T  T  P  L  I  F  N  *  N  N  T  P  Q  K  F  T  F  F  S  T  N  T  S  K  I  Q  S  L  S  S  K  *  A  N  Q  E  T  R  N  K  L  L  C  N  C  *  E  S  *  S  *  G  S  K  F  D  F  G  K  F  K  F  R  *  V  E  G  T  K  G  N  C  W  L  *  L  D  *  R  M  :  I  G  Q  T  L  R  R  A  T  V  *  W  Q  T  G  M  L  V  S  R  L  A  V  *  R  R  W  *  M  C  Q  D  T  T   : A  T  *  K  C  *  N  S  S  I  S  L  Y  E  D  I  *  N  S  G  F  P  R  S  S  L  D  M  D  V  S  W  N  T  T  *  Y  *  Q  N  P  L  V  *  K  F  *  E  E  R  I  S  R  H  F  Y  Y  S  R  A  P  L  *  S  L  Y  S  S  R  K  P  Y  G  S  C  S  C  P  D  I  T  R  *  D  R  F  Y  G  E  K  G  R  C  W  T  T  V  F  R  G  D  R  K  D  *  P  R  V  C  R  V  V  G  *  R  K  R  S  R  Q  S  K  L  Y  S  E  L  L  T  F  *  I  S  L  C  S  S  E  *  *  R  N  C  *  *  E  W  G  E  A  L  L  F  G  S  F  S  L  *  T  I  W  T  R  E  I  D  A  Y  C  S  V  W  E  Y  K  K  T  N  R  D  T  *  I  Y  P  K  L  V  L  A  S  E  C  K  Q  G  F  R  A  R  Y  G  V  P  F  V  P  K  R  N  P  N  E  R  K  G  S  N  K  E  T  I  L  E  P  *  V  V  G  Y  M  G  S  *  I  Q  E  V  D  G  Q  S  G  A  R  N  A  L  S  F  R  S  Q  H  H  F  P  A  S  T  T  C  C  R  *  A  R  P  C  W  F  R  C  Q  F  F  S  C  S  A  S  *  R  R  N  R  W  N  I  C  S  E  P  C  Q  Q  I  L  Q  T  C  C  T  L  Q  G  L  Q  Q  R  C  *  S  F  R  D  L  E  K  G  P  L  C  Y  S  S  R  V  N  C  I  R  D  S  S  V  W  K  T  M  E  G  L  A  F  A  F  D  V  A  M  F  S  W  C  I  C  L  F  N  S  H  C  N  E  H  N  Q  L  H  K  D  S  Q  K  I  V  K  S  M  Y  I  I  A  I  F  I  L  M  F  F  M  *  N  R  I  Q  V  Y  V  L  F  I  H  I  A  P  S  V  P  I  Y  V  T  L  F  D  L  T  L  N  K  *  I  S  Y  Y  L  C  Y  A  * </first_frame>
            <second_frame>  P  T  P  F  S  S  Q  K  S  L  T  I  M  A  L  Q  Q  P  F  L  S  E  L  L  L  H  S  S  S  I  R  T  T  L  P  K  S  S  L  F  S  L  Q  I  P  Q  R  F  N  L  Y  L  Q  N  K  Q  I  K  K  Q  G  T  S  C  Y  A  I  A  E  N  L  E  A  E  D  Q  S  L  I  L  E  N  S  S  L  D  E  L  R  G  Q  R  E  I  V  G  Y  D  W  T  E  E  * :   L  A  K  L  S  E  G  Q  L  Y  D  G  K  L  E  C  L  Y  H  G  W  Q  F  D  G  D  G  K  C  V  K  I  P  Q  :  L  P  E  N  A  K  I  P  R  S  A  C  T  K  T  Y  E  I  R  D  S  Q  G  V  V  W  I  W  M  S  H  G  T  P  P  N  I  N  K  I  P  W  F  E  N  F  E  R  K  G  F  R  D  I  S  T  I  H  E  L  P  Y  D  H  S  I  L  L  E  N  L  M  D  P  A  H  V  P  I  S  H  D  R  T  D  F  T  A  K  R  E  D  A  G  P  L  F  F  E  V  T  E  R  T  N  R  G  F  A  G  W  W  G  K  E  R  D  Q  G  K  A  N  Y  T  P  N  F  L  R  F  E  S  P  C  V  L  Q  N  N  R  E  I  V  D  E  S  G  E  K  H  Y  F  S  G  L  F  L  C  R  P  S  G  Q  G  K  S  M  L  I  V  R  F  G  N  T  R  K  R  T  G  I  L  K  F  I  P  N  W  F  L  H  Q  N  A  S  K  V  F  E  Q  D  M  G  F  L  S  S  Q  N  E  I  L  M  K  E  K  V  P  T  K  K  L  Y  L  N  L  K  S  S  D  T  W  V  A  E  Y  R  K  W  M  D  K  V  G  H  G  M  P  Y  H  F  G  H  S  T  I  F  L  P  Q  Q  P  A  V  V  E  H  A  P  A  G  F  V  A  N  F  S  A  A  Q  P  A  K  G  G  I  G  G  I  Y  A  P  N  P  A  N  R  Y  F  R  H  V  V  H  C  R  D  C  S  N  V  V  K  A  F  E  T  W  K  K  A  L  S  V  I  A  L  V  S  T  A  F  A  I  L  V  S  G  R  Q  W  K  A  L  L  L  L  S  T  S  L  C  L  A  G  A  Y  A  C  S  T  A  I  A  M  N  T  T  N  F  I  R  T  H  R  R  L  *  K  V  C  I  *  *  L  Y  S  Y  *  C  F  S  C  K  I  G  F  R  F  M  C  F  S  Y  I  L  L  P  P  S  Q  F  M  *  H  C  L  I  *  H  L  I  S  E  S  H  I  I  S  A  M  L   </second_frame>
            <third_frame>   Q  L  L  F  P  P  K  N  H  S  Q  *  W  L  Y  N  N  H  F  Y  L  N  Y  Y  S  T  H  L  Q  L  E  Q  H  S  P  K  V  H  F  F  L  Y  K  Y  L  K  D  S  I  F  I  F  K  I  S  K  S  R  N  K  E  Q  V  V  M  Q  L  L  R  I  L  K  L  R  I  K  V  *  F  W  K  I  Q  V  *  M  S  *  G  D  K  G  K  L  L  V  M  I  G  L  K  N   : D  W  P  N  S  P  K  G  N  C  M  M  A  N  W  N  A  C  I  T  V  G  S  L  T  E  M  V  N  V  S  R  Y  H  S :   Y  L  K  M  L  K  F  L  D  Q  L  V  R  R  H  M  K  F  G  I  P  K  E  *  S  G  Y  G  C  L  M  E  H  H  L  I  L  T  K  S  P  G  L  K  I  L  R  G  K  D  F  E  T  F  L  L  F  T  S  S  L  M  I  T  L  F  F  S  K  T  L  W  I  L  L  M  S  R  Y  H  T  I  G  Q  I  L  R  R  K  G  K  M  L  D  H  C  F  S  R  *  Q  K  G  L  T  E  G  L  Q  G  G  G  V  K  K  E  I  K  A  K  Q  T  I  L  R  T  S  Y  V  L  N  L  L  V  F  F  R  I  I  E  K  L  L  M  R  V  G  R  S  I  T  F  R  V  F  F  F  V  D  H  L  D  K  G  N  R  C  L  L  F  G  L  G  I  Q  E  N  E  P  G  Y  L  N  L  S  Q  T  G  S  C  I  R  M  Q  A  R  F  S  S  K  I  W  G  S  F  R  P  K  T  K  S  *  *  K  K  R  F  Q  Q  R  N  Y  T  *  T  L  S  R  R  I  H  G  *  L  N  T  G  S  G  W  T  K  W  G  T  E  C  L  I  I  S  V  T  A  P  F  S  C  L  N  N  L  L  S  L  S  T  P  L  L  V  S  L  P  I  F  Q  L  L  S  Q  L  K  E  E  S  V  E  Y  M  L  R  T  L  P  T  D  T  S  D  M  L  Y  I  A  G  I  A  A  T  L  L  K  L  S  R  L  G  K  R  P  S  L  L  *  L  S  C  Q  L  H  S  R  F  *  C  L  E  D  N  G  R  P  C  F  C  F  R  R  R  Y  V  *  L  V  H  M  L  V  Q  Q  P  L  Q  *  T  Q  P  T  S  *  G  L  T  E  D  C  K  K  Y  V  Y  N  S  Y  I  H  I  D  V  F  H  V  K  *  D  S  G  L  C  A  F  H  T  Y  C  S  L  R  P  N  L  C  D  T  V  *  F  D  T  *  *  V  N  L  I  L  S  L  L  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2361" stop="2462"/>
                    <exon start="2560" stop="3693"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAKLSEGQLYDGKLECLYHGWQFDGDGKCVKIPQLPENAKIPRSACTKTYEIRDSQGVVWIWMSHGTPPNINKIPWFENFERKGFRDISTIHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAGPLFFEVTERTNRGFAGWWGKERDQGKANYTPNFLRFESPCVLQNNREIVDESGEKHYFSGLFLCRPSGQGKSMLIVRFGNTRKRTGILKFIPNWFLHQNASKVFEQDMGFLSSQNEILMKEKVPTKKLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTIFLPQQPAVVEHAPAGFVANFSAAQPAKGGIGGIYAPNPANRYFRHVVHCRDCSNVVKAFETWKKALSVIALVSTAFAILVSGRQWKALLLLSTSLCLAGAYACSTAIAMNTTNFIRTHRRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="836" stop="2360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPFSSQKSLTIMALQQPFLSELLLHSSSIRTTLPKSSLFSLQIPQRFNLYLQNKQIKKQGTSCYAIAENLEAEDQSLILENSSLDELRGQREIVGYDWTEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="825" e_stop="1672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="825" e_stop="1672" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="825" stop="1672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="825" stop="1639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="872" stop="1602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTAATGCATCCAACTCCTTTTTCCTCCCAAAAATCACTCACAATAATGGCTTTACAACAACCATTTCTATCTGAATTACTACTCCACTCATCTTCAATTAGAACAACACTCCCCAAAAGTTCACTTTTTTCTCTACAAATACCTCAAAGATTCAATCTTTATCTTCAAAATAAGCAAATCAAGAAACAAGGAACAAGTTGTTATGCAATTGCTGAGAATCTTGAAGCTGAGGATCAAAGTTTGATTTTGGAAAATTCAAGTTTAGATGAGTTGAGGGGACAAAGGGAAATTGTTGGTTATGATTGGACTGAAGAATGGTATCCTTTGTATTTAACCAAGAATGTACCTAATGATGCACCTTTAGGTCTTACTGTCTTTGATAAACAAGTTGTTTTGTATAAAGATGGAAGTGGTGAACTTAGATGCTTTGAAGATAGATGTCCACATAGGTAAAAAGAACATACTATATATGTTTGTGTTTTCATTGTCTCAGTTCAGTGTACAAAGCATCTCGATATAAATAGTACTAATTAAACGTATAGGTCACACAGAGATAACTTTGTTTGTTCAAGAACTTAGTATTTTAGCATGATCTTGTTATGCATAGACATTTCTTTTTTACTTGTTCCTTATGTAGTTAAGTGATAGCTAATACATTATGTAGTTGCTTAATTTCTCTTGATTAGCTAAAATCTATGTTTCGTGTAAGGGACAAGTACAAGAAGGGAAGTAGGAAGAATCGATTTGTAGCAACTACGATTTGAGTTACTAGTCGTTGGAAAGTCTCACAAGACGGATGAGCTCCGTTTTTTTTCATCATACTATGGTGGAAAAACATCTGTTTTT</gDNA_template>
            <first_frame> L  *  C  I  Q  L  L  F  P  P  K  N  H  S  Q  *  W  L  Y  N  N  H  F  Y  L  N  Y  Y  S  T  H  L  Q  L  E  Q  H  S  P  K  V  H  F  F  L  Y  K  Y  L  K  D  S  I  F  I  F  K  I  S  K  S  R  N  K  E  Q  V  V  M  Q  L  L  R  I  L  K  L  R  I  K  V  *  F  W  K  I  Q  V  *  M  S  *  G  D  K  G  K  L  L  V  M  I  G  L  K  N  G  I  L  C  I  *  P  R  M  Y  L  M  M  H  L  *  V  L  L  S  L  I  N  K  L  F  C  I  K  M  E  V  V  N  L  D  A  L  K  I  D  V  H  I  G  K  K  N  I  L  Y  M  F  V  F  S  L  S  Q  F  S  V  Q  S  I  S  I  *  I  V  L  I  K  R  I  G  H  T  E  I  T  L  F  V  Q  E  L  S  I  L  A  *  S  C  Y  A  *  T  F  L  F  Y  L  F  L  M  *  L  S  D  S  *  Y  I  M  *  L  L  N  F  S  *  L  A  K  I  Y  V  S  C  K  G  Q  V  Q  E  G  K  *  E  E  S  I  C  S  N  Y  D  L  S  Y  *  S  L  E  S  L  T  R  R  M  S  S  V  F  F  H  H  T  M  V  E  K  H  L  F   </first_frame>
            <second_frame>  S  N  A  S  N  S  F  F  L  P  K  I  T  H  N  N  G  F  T  T  T  I  S  I  *  I  T  T  P  L  I  F  N  *  N  N  T  P  Q  K  F  T  F  F  S  T  N  T  S  K  I  Q  S  L  S  S  K  *  A  N  Q  E  T  R  N  K  L  L  C  N  C  *  E  S  *  S  *  G  S  K  F  D  F  G  K  F  K  F  R  *  V  E  G  T  K  G  N  C  W  L  *  L  D  *  R  M  V  S  F  V  F  N  Q  E  C  T  *  *  C  T  F  R  S  Y  C  L  *  *  T  S  C  F  V  *  R  W  K  W  *  T  *  M  L  *  R  *  M  S  T  *  V  K  R  T  Y  Y  I  C  L  C  F  H  C  L  S  S  V  Y  K  A  S  R  Y  K  *  Y  *  L  N  V  *  V  T  Q  R  *  L  C  L  F  K  N  L  V  F  *  H  D  L  V  M  H  R  H  F  F  F  T  C  S  L  C  S  *  V  I  A  N  T  L  C  S  C  L  I  S  L  D  *  L  K  S  M  F  R  V  R  D  K  Y  K  K  G  S  R  K  N  R  F  V  A  T  T  I  *  V  T  S  R  W  K  V  S  Q  D  G  *  A  P  F  F  F  I  I  L  W  W  K  N  I  C  F  </second_frame>
            <third_frame>   L  M  H  P  T  P  F  S  S  Q  K  S  L  T  I  M  A  L  Q  Q  P  F  L  S  E  L  L  L  H  S  S  S  I  R  T  T  L  P  K  S  S  L  F  S  L  Q  I  P  Q  R  F  N  L  Y  L  Q  N  K  Q  I  K  K  Q  G  T  S  C  Y  A  I  A  E  N  L  E  A  E  D  Q  S  L  I  L  E  N  S  S  L  D  E  L  R  G  Q  R  E  I  V  G  Y  D  W  T  E  E  W  Y  P  L  Y  L  T  K  N  V  P  N  D  A  P  L  G  L  T  V  F  D  K  Q  V  V  L  Y  K  D  G  S  G  E  L  R  C  F  E  D  R  C  P  H  R  *  K  E  H  T  I  Y  V  C  V  F  I  V  S  V  Q  C  T  K  H  L  D  I  N  S  T  N  *  T  Y  R  S  H  R  D  N  F  V  C  S  R  T  *  Y  F  S  M  I  L  L  C  I  D  I  S  F  L  L  V  P  Y  V  V  K  *  *  L  I  H  Y  V  V  A  *  F  L  L  I  S  *  N  L  C  F  V  *  G  T  S  T  R  R  E  V  G  R  I  D  L  *  Q  L  R  F  E  L  L  V  V  G  K  S  H  K  T  D  E  L  R  F  F  S  S  Y  Y  G  G  K  T  S  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="827" stop="1279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMHPTPFSSQKSLTIMALQQPFLSELLLHSSSIRTTLPKSSLFSLQIPQRFNLYLQNKQIKKQGTSCYAIAENLEAEDQSLILENSSLDELRGQREIVGYDWTEEWYPLYLTKNVPNDAPLGLTVFDKQVVLYKDGSGELRCFEDRCPHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4779" PGL_stop="3398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4779" e_stop="4766"/>
            <exon e_start="3852" e_stop="3398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.786"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.786">
            <gDNA_exon_boundary e_start="4779" e_stop="4766" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4765" i_stop="3853" i_length="913"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="3852" e_stop="3398" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4779" stop="4766"/>
              <exon start="3852" stop="3398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4779" stop="4766"/>
              <exon start="3852" stop="3424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4779" stop="4766"/>
              <exon start="3852" stop="3451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4779" stop="4766"/>
              <exon start="3852" stop="3523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTAATGTT : CATAGCAGAGATAATATGAGATTCACTTATTAAGTGTCAAATCAAACAGTGTCACATAAATTGGGACGGAGGGAGCAATATGTATGAAAAGCACATAAACCTGAATCCTATTTTACATGAAAAACATCAATATGAATATAGCTATTATATACATACTTTTTACAATCTTCTGTGAGTCCTTATGAAGTTGGTTGTGTTCATTGCAATGGCTGTTGAACAAGCATATGCACCAGCTAAACATAGCGACGTCGAAAGCAAAAGCAAGGCCTTCCATTGTCTTCCAGACACTAGAATCGCGAATGCAGTTGACACGAGAGCTATAACAGAGAGGGCCTTTTTCCAAGTCTCGAAAGCTTTAACAACGTTGCTGCAATCCCTGCAATGTACAACATGTCTGAAGTATCTGTTGGCAGGGTTCGGAGCATATATTCCACCGATTCCTCCTTTAGCTGGCT</gDNA_template>
            <first_frame> F  F  L  M  F :   I  A  E  I  I  *  D  S  L  I  K  C  Q  I  K  Q  C  H  I  N  W  D  G  G  S  N  M  Y  E  K  H  I  N  L  N  P  I  L  H  E  K  H  Q  Y  E  Y  S  Y  Y  I  H  T  F  Y  N  L  L  *  V  L  M  K  L  V  V  F  I  A  M  A  V  E  Q  A  Y  A  P  A  K  H  S  D  V  E  S  K  S  K  A  F  H  C  L  P  D  T  R  I  A  N  A  V  D  T  R  A  I  T  E  R  A  F  F  Q  V  S  K  A  L  T  T  L  L  Q  S  L  Q  C  T  T  C  L  K  Y  L  L  A  G  F  G  A  Y  I  P  P  I  P  P  L  A  G  </first_frame>
            <second_frame>  F  F  *  C   : S  *  Q  R  *  Y  E  I  H  L  L  S  V  K  S  N  S  V  T  *  I  G  T  E  G  A  I  C  M  K  S  T  *  T  *  I  L  F  Y  M  K  N  I  N  M  N  I  A  I  I  Y  I  L  F  T  I  F  C  E  S  L  *  S  W  L  C  S  L  Q  W  L  L  N  K  H  M  H  Q  L  N  I  A  T  S  K  A  K  A  R  P  S  I  V  F  Q  T  L  E  S  R  M  Q  L  T  R  E  L  *  Q  R  G  P  F  S  K  S  R  K  L  *  Q  R  C  C  N  P  C  N  V  Q  H  V  *  S  I  C  W  Q  G  S  E  H  I  F  H  R  F  L  L  *  L  A </second_frame>
            <third_frame>   F  F  N  V  :  H  S  R  D  N  M  R  F  T  Y  *  V  S  N  Q  T  V  S  H  K  L  G  R  R  E  Q  Y  V  *  K  A  H  K  P  E  S  Y  F  T  *  K  T  S  I  *  I  *  L  L  Y  T  Y  F  L  Q  S  S  V  S  P  Y  E  V  G  C  V  H  C  N  G  C  *  T  S  I  C  T  S  *  T  *  R  R  R  K  Q  K  Q  G  L  P  L  S  S  R  H  *  N  R  E  C  S  *  H  E  S  Y  N  R  E  G  L  F  P  S  L  E  S  F  N  N  V  A  A  I  P  A  M  Y  N  M  S  E  V  S  V  G  R  V  R  S  I  Y  S  T  D  S  S  F  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3677" stop="3399"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLMKLVVFIAMAVEQAYAPAKHSDVESKSKAFHCLPDTRIANAVDTRAITERAFFQVSKALTTLLQSLQCTTCLKYLLAGFGAYIPPIPPLAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5035" PGL_stop="11687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5035" e_stop="5107"/>
            <exon e_start="6027" e_stop="6075"/>
            <exon e_start="6173" e_stop="6452"/>
            <exon e_start="6546" e_stop="6681"/>
            <exon e_start="7381" e_stop="7631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5035" e_stop="5107" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="6075" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6173" e_stop="6452" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6546" e_stop="6681" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7381" e_stop="7631" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5035" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5042" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5047" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5048" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5048" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5052" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5056" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5067" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5068" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5069" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5069" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5071" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5072" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5072" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5076" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5087" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6316" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6426" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6426" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541402" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6581" stop="6681"/>
              <exon start="7381" stop="7631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6592" stop="6681"/>
              <exon start="7381" stop="7594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6627" stop="6681"/>
              <exon start="7381" stop="7594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG : ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG : AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG : TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG : GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGAACTACTATAAGATTCACATATTCTGGTCATTGTTTTATGGTCCAAACAAAACACTT</gDNA_template>
            <first_frame> F  L  P  P  Y  L  F  L  F  L  P  R  T  L  Q  L  H  F  S  S  T  K  S  N   : D  Y  P  R  E  K  Q  E  R  D  L  Q  V  P  L  P  R :   G  S  M  L  C  *  E  G  L  Q  L  G  E  T  S  *  H  *  C  A  E  P  T  S  D  *  A  D  A  E  L  *  V  K  G  V  C  A  R  D  L  C  L  D  A  L  L  L  V  S  Y  Q  *  W  H  *  V  P  Q  D  L  P  Q  S  S  F  *  N  C  P  C  H  I  E  E  V  C  *  A  P  W  S  S  H  G  W  T  S  R  R  *  A  P  :  W  T  T  K  V  *  G  *  *  A  K  V  W  *  *  G  W  L  S  C  W  S  K  R  S  T  W  *  I  W  R  R  E  G  W  S  S  S  *  L  P  A  R  I  Q   : G  W  W  W  K  T  W  I  W  S  W  S  R  R  F  W  W  C  T  P  *  F  K  L  L  G  F  Y  C  F  I  Q  I  L  I  I  K  C  W  T  Q  L  D  Y  Y  S  L  L  *  N  T  L  L  C  R  Q  F  Q  S  I  F  L  S  L  M  N  Y  Y  K  I  H  I  F  W  S  L  F  Y  G  P  N  K  T  L </first_frame>
            <second_frame>  F  F  L  P  I  S  S  S  F  C  R  E  L  F  S  F  T  F  L  Q  R  N  Q  M  :  I  I  P  E  K  N  R  R  E  I  S  K  Y  L  F  Q   : E  G  V  C  F  A  K  K  D  Y  N  L  A  K  H  P  N  I  D  V  P  N  L  Q  V  I  K  L  M  Q  S  F  K  S  K  E  Y  V  R  E  T  F  A  W  M  H  Y  Y  W  Y  L  T  N  D  G  I  E  F  L  R  T  Y  L  N  L  P  S  E  I  V  P  A  T  L  K  K  S  A  K  P  L  G  R  P  M  G  G  P  P  G  D  R  P  R :   G  P  P  R  F  E  G  D  R  P  R  F  G  D  R  D  G  Y  R  A  G  P  R  G  P  P  G  E  F  G  G  E  K  G  G  A  P  A  D  Y  Q  P  A  F  R  :  G  G  G  G  R  P  G  F  G  R  G  A  G  G  F  G  G  A  P  P  S  S  S  S  *  V  S  I  V  L  S  K  F  *  S  L  N  V  G  L  N  L  T  I  I  L  S  F  K  T  L  C  Y  A  G  N  F  N  L  S  F  Y  L  *  *  T  T  I  R  F  T  Y  S  G  H  C  F  M  V  Q  T  K  H   </second_frame>
            <third_frame>   S  S  S  L  S  L  P  L  F  A  E  N  S  S  A  S  L  F  F  N  E  I  K  * :   L  S  Q  R  K  T  G  E  R  S  P  S  T  S  S  K  :  R  E  Y  A  L  L  R  R  T  T  T  W  R  N  I  L  T  L  M  C  R  T  Y  K  *  L  S  *  C  R  A  L  S  Q  R  S  M  C  A  R  P  L  L  G  C  T  T  T  G  I  L  P  M  M  A  L  S  S  S  G  L  T  S  I  F  L  L  K  L  S  L  P  H  *  R  S  L  L  S  P  L  V  V  P  W  V  D  L  Q  A  I  G  P   : V  D  H  Q  G  L  R  V  I  G  Q  G  L  V  I  G  M  V  I  V  L  V  Q  E  V  H  L  V  N  L  E  A  R  R  V  E  L  Q  L  T  T  S  P  H  S  G :   V  V  V  E  D  L  D  L  V  V  E  P  E  V  L  V  V  H  P  L  V  Q  A  P  R  F  L  L  F  Y  P  N  F  D  H  *  M  L  D  S  T  *  L  L  F  S  P  L  K  H  S  A  M  Q  A  I  S  I  Y  L  F  I  F  N  E  L  L  *  D  S  H  I  L  V  I  V  L  W  S  K  Q  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5036" stop="5107"/>
                    <exon start="6027" stop="6075"/>
                    <exon start="6173" stop="6452"/>
                    <exon start="6546" stop="6681"/>
                    <exon start="7381" stop="7455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLPISSSFCRELFSFTFLQRNQMIIPEKNRREISKYLFQEGVCFAKKDYNLAKHPNIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPLGRPMGGPPGDRPRGPPRFEGDRPRFGDRDGYRAGPRGPPGEFGGEKGGAPADYQPAFRGGGGRPGFGRGAGGFGGAPPSSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5035" e_stop="5107"/>
            <exon e_start="6027" e_stop="6075"/>
            <exon e_start="6173" e_stop="6452"/>
            <exon e_start="6546" e_stop="6681"/>
            <exon e_start="7381" e_stop="7574"/>
            <exon e_start="8812" e_stop="8844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.697"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5035" e_stop="5107" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="6075" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6173" e_stop="6452" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6546" e_stop="6681" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7381" e_stop="7574" e_length="194"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7575" i_stop="8811" i_length="1237"/>
          </intron>
          <exon e_serial="6" e_score="0.697">
            <gDNA_exon_boundary e_start="8812" e_stop="8844" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5035" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5047" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5048" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5056" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5067" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5068" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5069" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5071" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5076" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5087" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6316" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6372" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7574"/>
              <exon start="8812" stop="8844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323542" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG : ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG : AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG : TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG : GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATG : AAAAAAAAATATAAATTTTCGTTACTTATTTTC</gDNA_template>
            <first_frame> F  L  P  P  Y  L  F  L  F  L  P  R  T  L  Q  L  H  F  S  S  T  K  S  N   : D  Y  P  R  E  K  Q  E  R  D  L  Q  V  P  L  P  R :   G  S  M  L  C  *  E  G  L  Q  L  G  E  T  S  *  H  *  C  A  E  P  T  S  D  *  A  D  A  E  L  *  V  K  G  V  C  A  R  D  L  C  L  D  A  L  L  L  V  S  Y  Q  *  W  H  *  V  P  Q  D  L  P  Q  S  S  F  *  N  C  P  C  H  I  E  E  V  C  *  A  P  W  S  S  H  G  W  T  S  R  R  *  A  P  :  W  T  T  K  V  *  G  *  *  A  K  V  W  *  *  G  W  L  S  C  W  S  K  R  S  T  W  *  I  W  R  R  E  G  W  S  S  S  *  L  P  A  R  I  Q   : G  W  W  W  K  T  W  I  W  S  W  S  R  R  F  W  W  C  T  P  *  F  K  L  L  G  F  Y  C  F  I  Q  I  L  I  I  K  C  W  T  Q  L  D  Y  Y  S  L  L  *  N  T  L  L  C  R  Q  F  Q  S  I  F  L  S  L  M  :  K  K  K  Y  K  F  S  L  L  I  F </first_frame>
            <second_frame>  F  F  L  P  I  S  S  S  F  C  R  E  L  F  S  F  T  F  L  Q  R  N  Q  M  :  I  I  P  E  K  N  R  R  E  I  S  K  Y  L  F  Q   : E  G  V  C  F  A  K  K  D  Y  N  L  A  K  H  P  N  I  D  V  P  N  L  Q  V  I  K  L  M  Q  S  F  K  S  K  E  Y  V  R  E  T  F  A  W  M  H  Y  Y  W  Y  L  T  N  D  G  I  E  F  L  R  T  Y  L  N  L  P  S  E  I  V  P  A  T  L  K  K  S  A  K  P  L  G  R  P  M  G  G  P  P  G  D  R  P  R :   G  P  P  R  F  E  G  D  R  P  R  F  G  D  R  D  G  Y  R  A  G  P  R  G  P  P  G  E  F  G  G  E  K  G  G  A  P  A  D  Y  Q  P  A  F  R  :  G  G  G  G  R  P  G  F  G  R  G  A  G  G  F  G  G  A  P  P  S  S  S  S  *  V  S  I  V  L  S  K  F  *  S  L  N  V  G  L  N  L  T  I  I  L  S  F  K  T  L  C  Y  A  G  N  F  N  L  S  F  Y  L  *  * :   K  K  N  I  N  F  R  Y  L  F   </second_frame>
            <third_frame>   S  S  S  L  S  L  P  L  F  A  E  N  S  S  A  S  L  F  F  N  E  I  K  * :   L  S  Q  R  K  T  G  E  R  S  P  S  T  S  S  K  :  R  E  Y  A  L  L  R  R  T  T  T  W  R  N  I  L  T  L  M  C  R  T  Y  K  *  L  S  *  C  R  A  L  S  Q  R  S  M  C  A  R  P  L  L  G  C  T  T  T  G  I  L  P  M  M  A  L  S  S  S  G  L  T  S  I  F  L  L  K  L  S  L  P  H  *  R  S  L  L  S  P  L  V  V  P  W  V  D  L  Q  A  I  G  P   : V  D  H  Q  G  L  R  V  I  G  Q  G  L  V  I  G  M  V  I  V  L  V  Q  E  V  H  L  V  N  L  E  A  R  R  V  E  L  Q  L  T  T  S  P  H  S  G :   V  V  V  E  D  L  D  L  V  V  E  P  E  V  L  V  V  H  P  L  V  Q  A  P  R  F  L  L  F  Y  P  N  F  D  H  *  M  L  D  S  T  *  L  L  F  S  P  L  K  H  S  A  M  Q  A  I  S  I  Y  L  F  I  F  N   : E  K  K  I  *  I  F  V  T  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5036" stop="5107"/>
                    <exon start="6027" stop="6075"/>
                    <exon start="6173" stop="6452"/>
                    <exon start="6546" stop="6681"/>
                    <exon start="7381" stop="7455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLPISSSFCRELFSFTFLQRNQMIIPEKNRREISKYLFQEGVCFAKKDYNLAKHPNIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPLGRPMGGPPGDRPRGPPRFEGDRPRFGDRDGYRAGPRGPPGEFGGEKGGAPADYQPAFRGGGGRPGFGRGAGGFGGAPPSSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5035" e_stop="5107"/>
            <exon e_start="6027" e_stop="6075"/>
            <exon e_start="6173" e_stop="6452"/>
            <exon e_start="6546" e_stop="6681"/>
            <exon e_start="7381" e_stop="7575"/>
            <exon e_start="9406" e_stop="9427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5035" e_stop="5107" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5108" i_stop="6026" i_length="919"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="6075" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="6076" i_stop="6172" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6173" e_stop="6452" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6453" i_stop="6545" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6546" e_stop="6681" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6682" i_stop="7380" i_length="699"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7381" e_stop="7575" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7576" i_stop="9405" i_length="1830"/>
          </intron>
          <exon e_serial="6" e_score="0.864">
            <gDNA_exon_boundary e_start="9406" e_stop="9427" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5035" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5047" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5048" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5056" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7575"/>
              <exon start="9406" stop="9427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5059" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5060" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5067" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5068" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5069" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5071" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5076" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5087" stop="5107"/>
              <exon start="6027" stop="6075"/>
              <exon start="6173" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6285" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6316" stop="6452"/>
              <exon start="6546" stop="6681"/>
              <exon start="7381" stop="7566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCCTATCTCTTCCTCTTTTTGCCGAGAACTCTTCAGCTTCACTTTTCTTCAACGAAATCAAATG : ATTATCCCAGAGAAAAACAGGAGAGAGATCTCCAAGTACCTCTTCCAAG : AGGGAGTATGCTTTGCTAAGAAGGACTACAACTTGGCGAAACATCCTAACATTGATGTGCCGAACCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCAAAGGAGTATGTGCGCGAGACCTTTGCTTGGATGCACTACTACTGGTATCTTACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCCACATTGAAGAAGTCTGCTAAGCCCCTTGGTCGTCCCATGGGTGGACCTCCAGGCGATAGGCCCCG : TGGACCACCAAGGTTTGAGGGTGATAGGCCAAGGTTTGGTGATAGGGATGGTTATCGTGCTGGTCCAAGAGGTCCACCTGGTGAATTTGGAGGCGAGAAGGGTGGAGCTCCAGCTGACTACCAGCCCGCATTCAGG : GGTGGTGGTGGAAGACCTGGATTTGGTCGTGGAGCCGGAGGTTTTGGTGGTGCACCCCCTAGTTCAAGCTCCTAGGTTTCTATTGTTTTATCCAAATTTTGATCATTAAATGTTGGACTCAACTTGACTATTATTCTCTCCTTTAAAACACTCTGCTATGCAGGCAATTTCAATCTATCTTTTTATCTTTAATGA : AAAATAAAAAGAAAAAAAAAAC</gDNA_template>
            <first_frame> F  L  P  P  Y  L  F  L  F  L  P  R  T  L  Q  L  H  F  S  S  T  K  S  N   : D  Y  P  R  E  K  Q  E  R  D  L  Q  V  P  L  P  R :   G  S  M  L  C  *  E  G  L  Q  L  G  E  T  S  *  H  *  C  A  E  P  T  S  D  *  A  D  A  E  L  *  V  K  G  V  C  A  R  D  L  C  L  D  A  L  L  L  V  S  Y  Q  *  W  H  *  V  P  Q  D  L  P  Q  S  S  F  *  N  C  P  C  H  I  E  E  V  C  *  A  P  W  S  S  H  G  W  T  S  R  R  *  A  P  :  W  T  T  K  V  *  G  *  *  A  K  V  W  *  *  G  W  L  S  C  W  S  K  R  S  T  W  *  I  W  R  R  E  G  W  S  S  S  *  L  P  A  R  I  Q   : G  W  W  W  K  T  W  I  W  S  W  S  R  R  F  W  W  C  T  P  *  F  K  L  L  G  F  Y  C  F  I  Q  I  L  I  I  K  C  W  T  Q  L  D  Y  Y  S  L  L  *  N  T  L  L  C  R  Q  F  Q  S  I  F  L  S  L  M   : K  N  K  K  K  K  K   </first_frame>
            <second_frame>  F  F  L  P  I  S  S  S  F  C  R  E  L  F  S  F  T  F  L  Q  R  N  Q  M  :  I  I  P  E  K  N  R  R  E  I  S  K  Y  L  F  Q   : E  G  V  C  F  A  K  K  D  Y  N  L  A  K  H  P  N  I  D  V  P  N  L  Q  V  I  K  L  M  Q  S  F  K  S  K  E  Y  V  R  E  T  F  A  W  M  H  Y  Y  W  Y  L  T  N  D  G  I  E  F  L  R  T  Y  L  N  L  P  S  E  I  V  P  A  T  L  K  K  S  A  K  P  L  G  R  P  M  G  G  P  P  G  D  R  P  R :   G  P  P  R  F  E  G  D  R  P  R  F  G  D  R  D  G  Y  R  A  G  P  R  G  P  P  G  E  F  G  G  E  K  G  G  A  P  A  D  Y  Q  P  A  F  R  :  G  G  G  G  R  P  G  F  G  R  G  A  G  G  F  G  G  A  P  P  S  S  S  S  *  V  S  I  V  L  S  K  F  *  S  L  N  V  G  L  N  L  T  I  I  L  S  F  K  T  L  C  Y  A  G  N  F  N  L  S  F  Y  L  *  *  :  K  I  K  R  K  K  K  </second_frame>
            <third_frame>   S  S  S  L  S  L  P  L  F  A  E  N  S  S  A  S  L  F  F  N  E  I  K  * :   L  S  Q  R  K  T  G  E  R  S  P  S  T  S  S  K  :  R  E  Y  A  L  L  R  R  T  T  T  W  R  N  I  L  T  L  M  C  R  T  Y  K  *  L  S  *  C  R  A  L  S  Q  R  S  M  C  A  R  P  L  L  G  C  T  T  T  G  I  L  P  M  M  A  L  S  S  S  G  L  T  S  I  F  L  L  K  L  S  L  P  H  *  R  S  L  L  S  P  L  V  V  P  W  V  D  L  Q  A  I  G  P   : V  D  H  Q  G  L  R  V  I  G  Q  G  L  V  I  G  M  V  I  V  L  V  Q  E  V  H  L  V  N  L  E  A  R  R  V  E  L  Q  L  T  T  S  P  H  S  G :   V  V  V  E  D  L  D  L  V  V  E  P  E  V  L  V  V  H  P  L  V  Q  A  P  R  F  L  L  F  Y  P  N  F  D  H  *  M  L  D  S  T  *  L  L  F  S  P  L  K  H  S  A  M  Q  A  I  S  I  Y  L  F  I  F  N  E :   K  *  K  E  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5036" stop="5107"/>
                    <exon start="6027" stop="6075"/>
                    <exon start="6173" stop="6452"/>
                    <exon start="6546" stop="6681"/>
                    <exon start="7381" stop="7455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLPISSSFCRELFSFTFLQRNQMIIPEKNRREISKYLFQEGVCFAKKDYNLAKHPNIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPLGRPMGGPPGDRPRGPPRFEGDRPRFGDRDGYRAGPRGPPGEFGGEKGGAPADYQPAFRGGGGRPGFGRGAGGFGGAPPSSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="8737" e_stop="9024"/>
            <exon e_start="9689" e_stop="9868"/>
            <exon e_start="10434" e_stop="10599"/>
            <exon e_start="11640" e_stop="11687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="0.928"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8737" e_stop="9024" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9025" i_stop="9688" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9689" e_stop="9868" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9869" i_stop="10433" i_length="565"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="10434" e_stop="10599" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10600" i_stop="11639" i_length="1040"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="11640" e_stop="11687" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8737" stop="8951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8740" stop="9024"/>
              <exon start="9689" stop="9868"/>
              <exon start="10434" stop="10599"/>
              <exon start="11640" stop="11687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8744" stop="9024"/>
              <exon start="9689" stop="9868"/>
              <exon start="10434" stop="10458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8762" stop="9024"/>
              <exon start="9689" stop="9868"/>
              <exon start="10434" stop="10482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGTGTAACACCAAAAATATATATGGAGAAACTCAAACTACAAATATATTCAATCCAAACACTATGTTTACGCAAAAAAAAATATAAATTTTCGTTACTTATTTTCTTGTGTTCGATAATATTTTTTTCGAAAACATCATGTTCAACTCTTTCATTTAATTTTTATGGATTATCTTGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTGGGAAATTGCTTCGTCTTCTTTTTCACGATTGCTTTGTTGAG : GGTTGTGATGCATCTATATTATTAGAAGGAAATGGAACAGAAAGAAGTGATCCAGCAAACAAATCACTTGGAGGATTTTCAGTAATAGAAAATGCCAAAAGGGTTTTGGAAATATTTTGTCCTTTTACGGTTTCTTGTGCTGATATTGTTGCTTTGGCGGCTAGAGATGCTGTTGAATTT : GCAGGAGGGCCAAATGTTCAAATTCCAACAGGAAGAAAAGATGGAAGAATTAGTTTGATAACAAATGTGAGACCAAACATAGTGGACACAAGTTTCACAATGGATCAAATGATTAATATTTTTACTATAAAGGGACTTTCTTTAGATGATCTTGTTATCCTATCAG : GTGCACACACAATAGGATCAGCACATTGCAATGCATTTAGTGATCGTT</gDNA_template>
            <first_frame> L  C  V  T  P  K  I  Y  M  E  K  L  K  L  Q  I  Y  S  I  Q  T  L  C  L  R  K  K  K  Y  K  F  S  L  L  I  F  L  C  S  I  I  F  F  S  K  T  S  C  S  T  L  S  F  N  F  Y  G  L  S  C  P  S  A  E  L  M  V  K  N  T  V  R  S  A  S  S  M  D  P  T  I  P  G  K  L  L  R  L  L  F  H  D  C  F  V  E  :  G  C  D  A  S  I  L  L  E  G  N  G  T  E  R  S  D  P  A  N  K  S  L  G  G  F  S  V  I  E  N  A  K  R  V  L  E  I  F  C  P  F  T  V  S  C  A  D  I  V  A  L  A  A  R  D  A  V  E  F  :  A  G  G  P  N  V  Q  I  P  T  G  R  K  D  G  R  I  S  L  I  T  N  V  R  P  N  I  V  D  T  S  F  T  M  D  Q  M  I  N  I  F  T  I  K  G  L  S  L  D  D  L  V  I  L  S   : G  A  H  T  I  G  S  A  H  C  N  A  F  S  D  R  </first_frame>
            <second_frame>  S  V  *  H  Q  K  Y  I  W  R  N  S  N  Y  K  Y  I  Q  S  K  H  Y  V  Y  A  K  K  N  I  N  F  R  Y  L  F  S  C  V  R  *  Y  F  F  R  K  H  H  V  Q  L  F  H  L  I  F  M  D  Y  L  V  P  Q  L  N  *  W  *  K  I  Q  *  D  Q  L  L  L  W  I  Q  L  Y  L  G  N  C  F  V  F  F  F  T  I  A  L  L  R :   V  V  M  H  L  Y  Y  *  K  E  M  E  Q  K  E  V  I  Q  Q  T  N  H  L  E  D  F  Q  *  *  K  M  P  K  G  F  W  K  Y  F  V  L  L  R  F  L  V  L  I  L  L  L  W  R  L  E  M  L  L  N  L :   Q  E  G  Q  M  F  K  F  Q  Q  E  E  K  M  E  E  L  V  *  *  Q  M  *  D  Q  T  *  W  T  Q  V  S  Q  W  I  K  *  L  I  F  L  L  *  R  D  F  L  *  M  I  L  L  S  Y  Q  :  V  H  T  Q  *  D  Q  H  I  A  M  H  L  V  I  V </second_frame>
            <third_frame>   L  C  N  T  K  N  I  Y  G  E  T  Q  T  T  N  I  F  N  P  N  T  M  F  T  Q  K  K  I  *  I  F  V  T  Y  F  L  V  F  D  N  I  F  F  E  N  I  M  F  N  S  F  I  *  F  L  W  I  I  L  S  L  S  *  I  N  G  E  K  Y  S  K  I  S  F  F  Y  G  S  N  Y  T  W  E  I  A  S  S  S  F  S  R  L  L  C  *   : G  L  *  C  I  Y  I  I  R  R  K  W  N  R  K  K  *  S  S  K  Q  I  T  W  R  I  F  S  N  R  K  C  Q  K  G  F  G  N  I  L  S  F  Y  G  F  L  C  *  Y  C  C  F  G  G  *  R  C  C  *  I   : C  R  R  A  K  C  S  N  S  N  R  K  K  R  W  K  N  *  F  D  N  K  C  E  T  K  H  S  G  H  K  F  H  N  G  S  N  D  *  Y  F  Y  Y  K  G  T  F  F  R  *  S  C  Y  P  I  R :   C  T  H  N  R  I  S  T  L  Q  C  I  *  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8737" stop="9024"/>
                    <exon start="9689" stop="9868"/>
                    <exon start="10434" stop="10599"/>
                    <exon start="11640" stop="11686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVTPKIYMEKLKLQIYSIQTLCLRKKKYKFSLLIFLCSIIFFSKTSCSTLSFNFYGLSCPSAELMVKNTVRSASSMDPTIPGKLLRLLFHDCFVEGCDASILLEGNGTERSDPANKSLGGFSVIENAKRVLEIFCPFTVSCADIVALAARDAVEFAGGPNVQIPTGRKDGRISLITNVRPNIVDTSFTMDQMINIFTIKGLSLDDLVILSGAHTIGSAHCNAFSDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14862" PGL_stop="23854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14862" e_stop="14951"/>
            <exon e_start="15073" e_stop="15245"/>
            <exon e_start="17725" e_stop="17852"/>
            <exon e_start="18824" e_stop="18922"/>
            <exon e_start="19014" e_stop="19172"/>
            <exon e_start="20026" e_stop="20112"/>
            <exon e_start="20203" e_stop="20294"/>
            <exon e_start="20688" e_stop="20762"/>
            <exon e_start="20869" e_stop="21360"/>
            <exon e_start="23817" e_stop="23854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.675" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.253" e_score="0.955"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="14862" e_stop="14951" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15073" e_stop="15245" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17725" e_stop="17852" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18824" e_stop="18922" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19014" e_stop="19172" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20026" e_stop="20112" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20203" e_stop="20294" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20688" e_stop="20762" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106"/>
          </intron>
          <exon e_serial="9" e_score="0.955">
            <gDNA_exon_boundary e_start="20869" e_stop="21360" e_length="492"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.253">
            <gDNA_intron_boundary i_start="21361" i_stop="23816" i_length="2456"/>
          </intron>
          <exon e_serial="10" e_score="0.553">
            <gDNA_exon_boundary e_start="23817" e_stop="23854" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14862" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14891" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15196" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15198" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17758" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17763" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20256" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="21360"/>
              <exon start="23817" stop="23854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20728" stop="20762"/>
              <exon start="20869" stop="21313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="21316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224176" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAG : ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG : TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG : GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG : CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG : CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG : GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG : GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG : GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCT : GATTAGATACTAATTAAAATGTTTGAAAAAAAGAACAA</gDNA_template>
            <first_frame> F  F  L  S  S  P  F  F  S  S  F  F  F  F  N  F  I  C  L  F  L  F  F  F  L  P  L  L  N  *  :  I  *  L  L  I  L  L  I  E  M  Y  F  G  D  N  *  A  F  A  I  *  I  I  W  I  F  W  W  I  V  M  G  Y  L  N  S  V  L  S  S  S  S  N  Q  I  H  A  D  D  A  P  V  S  G  G  G  L  S :   Q  N  G  K  F  S  Y  G  Y  S  S  S  P  G  K  R  S  S  M  E  D  F  Y  E  T  R  I  D  G  V  D  G  E  V  V  G  L  F  G  V  F  D   : G  H  G  G  A  R  A  A  E  Y  V  K  H  N  L  F  S  N  L  I  R  H  P  K  F  I  S  D  T  K  S  A  I   : A  D  A  Y  N  H  T  D  S  E  F  L  K  S  E  N  N  Q  H  K  D  A  G  S  T  A  S  T  A  I  L  V  G  D  R  L  L  V  A  N  V  G  D  S  R  A  V  I  C  R  G  G  T   : A  I  A  V  S  R  D  H  K  P  D  Q  T  D  E  R  Q  R  I  E  D  A  G  G  F  V  M  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  R  L  L  K  Q  Y  V  V  A  D  P  E  I  Q  :  E  E  K  V  D  G  S  L  E  F  L  I  L  A  S  D  G  L  W  D  V  V  T  N  E  :  E  A  V  S  M  V  K  P  I  Q  D  P  E  D  A  A  K  R  L  M  Q  E  A  Y  Q  R  G  S  A  D  N  I  T  I  V  V  V  R  F  L  G  N  Q  E  G  S  S  R  G  T  S  A  *  K  V  I  T  T  S  N  S  W  *  *  N  D  K  K  T  H  R  T  *  R  K  Y  *  I  *  I  D  F  W  V  Y  D  V  R  K  I  F  R  I  E  H  C  Q  S  F  L  S  T  C  M  K  C  S  R  V  N  L  G  I  S  Q  I  P  N  Y  *  C  S  M  F  N  I  Q  *  L  Y  N  I  Y  C  C  F  L  V  I  P  I  L  L  H  F  D  S  P  V  Y  N  N  I  C  Y  I  I  S  I  *  S  D  F  S  :  D  *  I  L  I  K  M  F  E  K  K  N   </first_frame>
            <second_frame>  F  F  F  Q  V  H  F  S  L  L  F  F  S  L  I  S  F  A  Y  F  F  F  F  F  F  L  F  *  I  R :   F  N  C  *  F  C  *  L  K  C  I  L  V  I  I  K  H  L  Q  F  E  *  F  G  F  F  G  G  S  *  W  V  I  *  I  R  C  C  H  L  L  L  I  K  F  M  L  M  M  R  L  L  V  A  V  D  *   : V  K  M  G  S  L  A  M  D  I  L  A  P  R  E  K  G  P  P  W  R  I  S  M  R  Q  E  L  M  A  L  M  E  R  *  L  V  S  L  E  F  L  M  :  V  M  E  V  L  G  L  Q  N  M  *  N  T  T  F  S  V  T  *  L  G  I  Q  N  L  S  L  T  P  N  L  P  *  :  L  M  H  T  T  I  Q  T  L  S  F  *  N  Q  K  T  I  S  T  K  M  L  D  Q  L  L  L  L  P  Y  L  W  V  I  V  Y  L  L  Q  M  W  A  I  L  E  L  L  F  A  G  V  A  Q  :  L  L  L  F  L  E  T  T  S  L  T  K  Q  M  S  D  S  A  S  K  M  L  E  V  L  *  C  G  Q  :  V  P  G  E  L  E  V  Y  L  L  F  L  V  L  L  A  I  D  F  *  S  S  T  L  S  L  I  Q  K  Y  R :   R  K  R  S  M  A  L  L  N  F  S  S  L  Q  V  M  D  S  G  T  L  *  R  M  R :   R  L  S  R  W  L  S  R  S  K  I  L  K  M  Q  L  R  G  *  C  R  K  H  I  K  E  A  V  Q  I  T  S  P  L  W  L  S  V  F  W  V  T  K  R  V  P  P  E  V  P  Q  L  K  K  *  L  P  L  L  T  R  G  N  K  T  T  R  K  P  I  G  R  N  V  N  I  E  Y  R  *  I  S  G  F  M  M  *  G  K  S  L  E  L  N  I  V  K  A  F  S  Q  L  V  *  S  V  Q  E  *  I  W  A  *  V  K  S  Q  I  I  D  V  L  C  L  T  Y  S  S  F  I  I  Y  T  A  V  F  L  *  S  P  F  Y  C  I  L  I  H  Q  C  I  T  T  F  V  I  L  Y  L  Y  S  P  T  F  L :   I  R  Y  *  L  K  C  L  K  K  R  T  </second_frame>
            <third_frame>   F  S  F  K  S  I  F  L  F  F  F  F  L  *  F  H  L  L  I  S  F  F  F  S  S  S  F  E  L   : D  L  I  V  N  F  V  D  *  N  V  F  W  *  *  L  S  I  C  N  L  N  N  L  D  F  L  V  D  R  N  G  L  F  E  F  G  V  V  I  F  F  *  S  N  S  C  *  *  C  A  C  *  W  R  W  I  K  :  S  K  W  E  V  *  L  W  I  F  *  L  P  G  K  K  V  L  H  G  G  F  L  *  D  K  N  *  W  R  *  W  R  G  S  W  S  L  W  S  F  *  W :   S  W  R  C  *  G  C  R  I  C  E  T  Q  P  F  Q  *  P  D  *  A  S  K  I  Y  L  *  H  Q  I  C  H  S :   *  C  I  Q  P  Y  R  L  *  V  S  E  I  R  K  Q  S  A  Q  R  C  W  I  N  C  F  Y  C  H  T  C  G  *  S  S  T  C  C  K  C  G  R  F  *  S  C  Y  L  Q  G  W  H  S :   Y  C  C  F  S  R  P  Q  A  *  P  N  R  *  A  T  A  H  R  R  C  W  R  F  C  D  V  G  R :   Y  L  E  S  W  R  C  T  C  C  F  S  C  F  W  R  *  T  F  K  A  V  R  C  R  *  S  R  N  T   : G  G  K  G  R  W  L  S  *  I  S  H  P  C  K  *  W  T  L  G  R  C  N  E  *   : G  G  C  L  D  G  *  A  D  P  R  S  *  R  C  S  *  E  A  D  A  G  S  I  S  K  R  Q  C  R  *  H  H  H  C  G  C  P  F  S  G  *  P  R  G  F  L  P  R  Y  L  S  L  K  S  N  Y  H  F  *  L  V  V  I  K  R  Q  E  N  P  *  D  V  T  *  I  L  N  I  D  R  F  L  G  L  *  C  K  E  N  L  *  N  *  T  L  S  K  L  S  L  N  L  Y  E  V  F  K  S  E  S  G  H  K  S  N  P  K  L  L  M  F  Y  V  *  H  T  V  A  L  *  Y  I  L  L  F  S  C  N  P  H  F  I  A  F  *  F  T  S  V  *  Q  H  L  L  Y  Y  I  Y  I  V  R  L  F   : *  L  D  T  N  *  N  V  *  K  K  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15136" stop="15245"/>
                    <exon start="17725" stop="17852"/>
                    <exon start="18824" stop="18922"/>
                    <exon start="19014" stop="19172"/>
                    <exon start="20026" stop="20112"/>
                    <exon start="20203" stop="20294"/>
                    <exon start="20688" stop="20762"/>
                    <exon start="20869" stop="21027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIWIFWWIVMGYLNSVLSSSSNQIHADDAPVSGGGLSQNGKFSYGYSSSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVTNEEAVSMVKPIQDPEDAAKRLMQEAYQRGSADNITIVVVRFLGNQEGSSRGTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14862" e_stop="14951"/>
            <exon e_start="15073" e_stop="15245"/>
            <exon e_start="17725" e_stop="17852"/>
            <exon e_start="18824" e_stop="18922"/>
            <exon e_start="19014" e_stop="19172"/>
            <exon e_start="20026" e_stop="20112"/>
            <exon e_start="20203" e_stop="20294"/>
            <exon e_start="20688" e_stop="20762"/>
            <exon e_start="20869" e_stop="21373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.675" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="14862" e_stop="14951" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15073" e_stop="15245" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17725" e_stop="17852" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18824" e_stop="18922" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18923" i_stop="19013" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19014" e_stop="19172" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20026" e_stop="20112" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20203" e_stop="20294" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20688" e_stop="20762" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="20869" e_stop="21373" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14862" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14891" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15196" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15198" stop="15245"/>
              <exon start="17725" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17758" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17759" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17763" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="20929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17803" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18824" stop="18922"/>
              <exon start="19014" stop="19172"/>
              <exon start="20026" stop="20079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20266" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="21373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20728" stop="20762"/>
              <exon start="20869" stop="21313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="21316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224176" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAG : ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG : TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG : GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG : CTGATGCATACAACCATACAGACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG : CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG : GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG : GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG : GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCTATAACAGTCATCT</gDNA_template>
            <first_frame> F  F  L  S  S  P  F  F  S  S  F  F  F  F  N  F  I  C  L  F  L  F  F  F  L  P  L  L  N  *  :  I  *  L  L  I  L  L  I  E  M  Y  F  G  D  N  *  A  F  A  I  *  I  I  W  I  F  W  W  I  V  M  G  Y  L  N  S  V  L  S  S  S  S  N  Q  I  H  A  D  D  A  P  V  S  G  G  G  L  S :   Q  N  G  K  F  S  Y  G  Y  S  S  S  P  G  K  R  S  S  M  E  D  F  Y  E  T  R  I  D  G  V  D  G  E  V  V  G  L  F  G  V  F  D   : G  H  G  G  A  R  A  A  E  Y  V  K  H  N  L  F  S  N  L  I  R  H  P  K  F  I  S  D  T  K  S  A  I   : A  D  A  Y  N  H  T  D  S  E  F  L  K  S  E  N  N  Q  H  K  D  A  G  S  T  A  S  T  A  I  L  V  G  D  R  L  L  V  A  N  V  G  D  S  R  A  V  I  C  R  G  G  T   : A  I  A  V  S  R  D  H  K  P  D  Q  T  D  E  R  Q  R  I  E  D  A  G  G  F  V  M  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  R  L  L  K  Q  Y  V  V  A  D  P  E  I  Q  :  E  E  K  V  D  G  S  L  E  F  L  I  L  A  S  D  G  L  W  D  V  V  T  N  E  :  E  A  V  S  M  V  K  P  I  Q  D  P  E  D  A  A  K  R  L  M  Q  E  A  Y  Q  R  G  S  A  D  N  I  T  I  V  V  V  R  F  L  G  N  Q  E  G  S  S  R  G  T  S  A  *  K  V  I  T  T  S  N  S  W  *  *  N  D  K  K  T  H  R  T  *  R  K  Y  *  I  *  I  D  F  W  V  Y  D  V  R  K  I  F  R  I  E  H  C  Q  S  F  L  S  T  C  M  K  C  S  R  V  N  L  G  I  S  Q  I  P  N  Y  *  C  S  M  F  N  I  Q  *  L  Y  N  I  Y  C  C  F  L  V  I  P  I  L  L  H  F  D  S  P  V  Y  N  N  I  C  Y  I  I  S  I  *  S  D  F  S  I  T  V  I  </first_frame>
            <second_frame>  F  F  F  Q  V  H  F  S  L  L  F  F  S  L  I  S  F  A  Y  F  F  F  F  F  F  L  F  *  I  R :   F  N  C  *  F  C  *  L  K  C  I  L  V  I  I  K  H  L  Q  F  E  *  F  G  F  F  G  G  S  *  W  V  I  *  I  R  C  C  H  L  L  L  I  K  F  M  L  M  M  R  L  L  V  A  V  D  *   : V  K  M  G  S  L  A  M  D  I  L  A  P  R  E  K  G  P  P  W  R  I  S  M  R  Q  E  L  M  A  L  M  E  R  *  L  V  S  L  E  F  L  M  :  V  M  E  V  L  G  L  Q  N  M  *  N  T  T  F  S  V  T  *  L  G  I  Q  N  L  S  L  T  P  N  L  P  *  :  L  M  H  T  T  I  Q  T  L  S  F  *  N  Q  K  T  I  S  T  K  M  L  D  Q  L  L  L  L  P  Y  L  W  V  I  V  Y  L  L  Q  M  W  A  I  L  E  L  L  F  A  G  V  A  Q  :  L  L  L  F  L  E  T  T  S  L  T  K  Q  M  S  D  S  A  S  K  M  L  E  V  L  *  C  G  Q  :  V  P  G  E  L  E  V  Y  L  L  F  L  V  L  L  A  I  D  F  *  S  S  T  L  S  L  I  Q  K  Y  R :   R  K  R  S  M  A  L  L  N  F  S  S  L  Q  V  M  D  S  G  T  L  *  R  M  R :   R  L  S  R  W  L  S  R  S  K  I  L  K  M  Q  L  R  G  *  C  R  K  H  I  K  E  A  V  Q  I  T  S  P  L  W  L  S  V  F  W  V  T  K  R  V  P  P  E  V  P  Q  L  K  K  *  L  P  L  L  T  R  G  N  K  T  T  R  K  P  I  G  R  N  V  N  I  E  Y  R  *  I  S  G  F  M  M  *  G  K  S  L  E  L  N  I  V  K  A  F  S  Q  L  V  *  S  V  Q  E  *  I  W  A  *  V  K  S  Q  I  I  D  V  L  C  L  T  Y  S  S  F  I  I  Y  T  A  V  F  L  *  S  P  F  Y  C  I  L  I  H  Q  C  I  T  T  F  V  I  L  Y  L  Y  S  P  T  F  L  *  Q  S  S </second_frame>
            <third_frame>   F  S  F  K  S  I  F  L  F  F  F  F  L  *  F  H  L  L  I  S  F  F  F  S  S  S  F  E  L   : D  L  I  V  N  F  V  D  *  N  V  F  W  *  *  L  S  I  C  N  L  N  N  L  D  F  L  V  D  R  N  G  L  F  E  F  G  V  V  I  F  F  *  S  N  S  C  *  *  C  A  C  *  W  R  W  I  K  :  S  K  W  E  V  *  L  W  I  F  *  L  P  G  K  K  V  L  H  G  G  F  L  *  D  K  N  *  W  R  *  W  R  G  S  W  S  L  W  S  F  *  W :   S  W  R  C  *  G  C  R  I  C  E  T  Q  P  F  Q  *  P  D  *  A  S  K  I  Y  L  *  H  Q  I  C  H  S :   *  C  I  Q  P  Y  R  L  *  V  S  E  I  R  K  Q  S  A  Q  R  C  W  I  N  C  F  Y  C  H  T  C  G  *  S  S  T  C  C  K  C  G  R  F  *  S  C  Y  L  Q  G  W  H  S :   Y  C  C  F  S  R  P  Q  A  *  P  N  R  *  A  T  A  H  R  R  C  W  R  F  C  D  V  G  R :   Y  L  E  S  W  R  C  T  C  C  F  S  C  F  W  R  *  T  F  K  A  V  R  C  R  *  S  R  N  T   : G  G  K  G  R  W  L  S  *  I  S  H  P  C  K  *  W  T  L  G  R  C  N  E  *   : G  G  C  L  D  G  *  A  D  P  R  S  *  R  C  S  *  E  A  D  A  G  S  I  S  K  R  Q  C  R  *  H  H  H  C  G  C  P  F  S  G  *  P  R  G  F  L  P  R  Y  L  S  L  K  S  N  Y  H  F  *  L  V  V  I  K  R  Q  E  N  P  *  D  V  T  *  I  L  N  I  D  R  F  L  G  L  *  C  K  E  N  L  *  N  *  T  L  S  K  L  S  L  N  L  Y  E  V  F  K  S  E  S  G  H  K  S  N  P  K  L  L  M  F  Y  V  *  H  T  V  A  L  *  Y  I  L  L  F  S  C  N  P  H  F  I  A  F  *  F  T  S  V  *  Q  H  L  L  Y  Y  I  Y  I  V  R  L  F  Y  N  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15136" stop="15245"/>
                    <exon start="17725" stop="17852"/>
                    <exon start="18824" stop="18922"/>
                    <exon start="19014" stop="19172"/>
                    <exon start="20026" stop="20112"/>
                    <exon start="20203" stop="20294"/>
                    <exon start="20688" stop="20762"/>
                    <exon start="20869" stop="21027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIWIFWWIVMGYLNSVLSSSSNQIHADDAPVSGGGLSQNGKFSYGYSSSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVTNEEAVSMVKPIQDPEDAAKRLMQEAYQRGSADNITIVVVRFLGNQEGSSRGTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14862" e_stop="14951"/>
            <exon e_start="15073" e_stop="15245"/>
            <exon e_start="17725" e_stop="17852"/>
            <exon e_start="18824" e_stop="18922"/>
            <exon e_start="19035" e_stop="19172"/>
            <exon e_start="20026" e_stop="20112"/>
            <exon e_start="20203" e_stop="20294"/>
            <exon e_start="20688" e_stop="20762"/>
            <exon e_start="20869" e_stop="21360"/>
            <exon e_start="23817" e_stop="23854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.675" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.974"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.954" e_score="0.993"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.253" e_score="0.955"/>
          <exon-only e_score="0.553"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="14862" e_stop="14951" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="14952" i_stop="15072" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="15073" e_stop="15245" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="15246" i_stop="17724" i_length="2479"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="17725" e_stop="17852" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17853" i_stop="18823" i_length="971"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="18824" e_stop="18922" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18923" i_stop="19034" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="19035" e_stop="19172" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.954">
            <gDNA_intron_boundary i_start="19173" i_stop="20025" i_length="853"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20026" e_stop="20112" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20113" i_stop="20202" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20203" e_stop="20294" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20295" i_stop="20687" i_length="393"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20688" e_stop="20762" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20763" i_stop="20868" i_length="106"/>
          </intron>
          <exon e_serial="9" e_score="0.955">
            <gDNA_exon_boundary e_start="20869" e_stop="21360" e_length="492"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.253">
            <gDNA_intron_boundary i_start="21361" i_stop="23816" i_length="2456"/>
          </intron>
          <exon e_serial="10" e_score="0.553">
            <gDNA_exon_boundary e_start="23817" e_stop="23854" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14862" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15245"/>
              <exon start="17725" stop="17800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14951"/>
              <exon start="15073" stop="15228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17766" stop="17852"/>
              <exon start="18824" stop="18922"/>
              <exon start="19035" stop="19172"/>
              <exon start="20026" stop="20112"/>
              <exon start="20203" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="21045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20256" stop="20294"/>
              <exon start="20688" stop="20762"/>
              <exon start="20869" stop="21360"/>
              <exon start="23817" stop="23854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369475" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20728" stop="20762"/>
              <exon start="20869" stop="21313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="21316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224176" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTTCAAGTCCATTTTTCTCTTCTTTTTTTTTCTTTAATTTCATTTGCTTATTTCTTTTTTTTTTTCTTCCTCTTTTGAATTAG : ATTTAATTGTTAATTTTGTTGATTGAAATGTATTTTGGTGATAATTAAGCATTTGCAATTTGAATAATTTGGATTTTTTGGTGGATCGTAATGGGTTATTTGAATTCGGTGTTGTCATCTTCTTCTAATCAAATTCATGCTGATGATGCGCCTGTTAGTGGCGGTGGATTAAG : TCAAAATGGGAAGTTTAGCTATGGATATTCTAGCTCCCCGGGAAAAAGGTCCTCCATGGAGGATTTCTATGAGACAAGAATTGATGGCGTTGATGGAGAGGTAGTTGGTCTCTTTGGAGTTTTTGATG : GTCATGGAGGTGCTAGGGCTGCAGAATATGTGAAACACAACCTTTTCAGTAACCTGATTAGGCATCCAAAATTTATCTCTGACACCAAATCTGCCATAG : ACTCTGAGTTTCTGAAATCAGAAAACAATCAGCACAAAGATGCTGGATCAACTGCTTCTACTGCCATACTTGTGGGTGATCGTCTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCAGGGGTGGCACAG : CTATTGCTGTTTCTCGAGACCACAAGCCTGACCAAACAGATGAGCGACAGCGCATCGAAGATGCTGGAGGTTTTGTGATGTGGGCAG : GTACCTGGAGAGTTGGAGGTGTACTTGCTGTTTCTCGTGCTTTTGGCGATAGACTTTTAAAGCAGTACGTTGTCGCTGATCCAGAAATACAG : GAGGAAAAGGTCGATGGCTCTCTTGAATTTCTCATCCTTGCAAGTGATGGACTCTGGGACGTTGTAACGAATGAG : GAGGCTGTCTCGATGGTTAAGCCGATCCAAGATCCTGAAGATGCAGCTAAGAGGCTGATGCAGGAAGCATATCAAAGAGGCAGTGCAGATAACATCACCATTGTGGTTGTCCGTTTTCTGGGTAACCAAGAGGGTTCCTCCCGAGGTACCTCAGCTTAAAAAGTAATTACCACTTCTAACTCGTGGTAATAAAACGACAAGAAAACCCATAGGACGTAACGTAAATATTGAATATAGATAGATTTCTGGGTTTATGATGTAAGGAAAATCTTTAGAATTGAACATTGTCAAAGCTTTCTCTCAACTTGTATGAAGTGTTCAAGAGTGAATCTGGGCATAAGTCAAATCCCAAATTATTGATGTTCTATGTTTAACATACAGTAGCTTTATAATATATACTGCTGTTTTCTTGTAATCCCCATTTTATTGCATTTTGATTCACCAGTGTATAACAACATTTGTTATATTATATCTATATAGTCCGACTTTTCT : GATTAGATACTAATTAAAATGTTTGAAAAAAAGAACAA</gDNA_template>
            <first_frame> F  F  L  S  S  P  F  F  S  S  F  F  F  F  N  F  I  C  L  F  L  F  F  F  L  P  L  L  N  *  :  I  *  L  L  I  L  L  I  E  M  Y  F  G  D  N  *  A  F  A  I  *  I  I  W  I  F  W  W  I  V  M  G  Y  L  N  S  V  L  S  S  S  S  N  Q  I  H  A  D  D  A  P  V  S  G  G  G  L  S :   Q  N  G  K  F  S  Y  G  Y  S  S  S  P  G  K  R  S  S  M  E  D  F  Y  E  T  R  I  D  G  V  D  G  E  V  V  G  L  F  G  V  F  D   : G  H  G  G  A  R  A  A  E  Y  V  K  H  N  L  F  S  N  L  I  R  H  P  K  F  I  S  D  T  K  S  A  I   : D  S  E  F  L  K  S  E  N  N  Q  H  K  D  A  G  S  T  A  S  T  A  I  L  V  G  D  R  L  L  V  A  N  V  G  D  S  R  A  V  I  C  R  G  G  T   : A  I  A  V  S  R  D  H  K  P  D  Q  T  D  E  R  Q  R  I  E  D  A  G  G  F  V  M  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  R  L  L  K  Q  Y  V  V  A  D  P  E  I  Q  :  E  E  K  V  D  G  S  L  E  F  L  I  L  A  S  D  G  L  W  D  V  V  T  N  E  :  E  A  V  S  M  V  K  P  I  Q  D  P  E  D  A  A  K  R  L  M  Q  E  A  Y  Q  R  G  S  A  D  N  I  T  I  V  V  V  R  F  L  G  N  Q  E  G  S  S  R  G  T  S  A  *  K  V  I  T  T  S  N  S  W  *  *  N  D  K  K  T  H  R  T  *  R  K  Y  *  I  *  I  D  F  W  V  Y  D  V  R  K  I  F  R  I  E  H  C  Q  S  F  L  S  T  C  M  K  C  S  R  V  N  L  G  I  S  Q  I  P  N  Y  *  C  S  M  F  N  I  Q  *  L  Y  N  I  Y  C  C  F  L  V  I  P  I  L  L  H  F  D  S  P  V  Y  N  N  I  C  Y  I  I  S  I  *  S  D  F  S  :  D  *  I  L  I  K  M  F  E  K  K  N   </first_frame>
            <second_frame>  F  F  F  Q  V  H  F  S  L  L  F  F  S  L  I  S  F  A  Y  F  F  F  F  F  F  L  F  *  I  R :   F  N  C  *  F  C  *  L  K  C  I  L  V  I  I  K  H  L  Q  F  E  *  F  G  F  F  G  G  S  *  W  V  I  *  I  R  C  C  H  L  L  L  I  K  F  M  L  M  M  R  L  L  V  A  V  D  *   : V  K  M  G  S  L  A  M  D  I  L  A  P  R  E  K  G  P  P  W  R  I  S  M  R  Q  E  L  M  A  L  M  E  R  *  L  V  S  L  E  F  L  M  :  V  M  E  V  L  G  L  Q  N  M  *  N  T  T  F  S  V  T  *  L  G  I  Q  N  L  S  L  T  P  N  L  P  *  :  T  L  S  F  *  N  Q  K  T  I  S  T  K  M  L  D  Q  L  L  L  L  P  Y  L  W  V  I  V  Y  L  L  Q  M  W  A  I  L  E  L  L  F  A  G  V  A  Q  :  L  L  L  F  L  E  T  T  S  L  T  K  Q  M  S  D  S  A  S  K  M  L  E  V  L  *  C  G  Q  :  V  P  G  E  L  E  V  Y  L  L  F  L  V  L  L  A  I  D  F  *  S  S  T  L  S  L  I  Q  K  Y  R :   R  K  R  S  M  A  L  L  N  F  S  S  L  Q  V  M  D  S  G  T  L  *  R  M  R :   R  L  S  R  W  L  S  R  S  K  I  L  K  M  Q  L  R  G  *  C  R  K  H  I  K  E  A  V  Q  I  T  S  P  L  W  L  S  V  F  W  V  T  K  R  V  P  P  E  V  P  Q  L  K  K  *  L  P  L  L  T  R  G  N  K  T  T  R  K  P  I  G  R  N  V  N  I  E  Y  R  *  I  S  G  F  M  M  *  G  K  S  L  E  L  N  I  V  K  A  F  S  Q  L  V  *  S  V  Q  E  *  I  W  A  *  V  K  S  Q  I  I  D  V  L  C  L  T  Y  S  S  F  I  I  Y  T  A  V  F  L  *  S  P  F  Y  C  I  L  I  H  Q  C  I  T  T  F  V  I  L  Y  L  Y  S  P  T  F  L :   I  R  Y  *  L  K  C  L  K  K  R  T  </second_frame>
            <third_frame>   F  S  F  K  S  I  F  L  F  F  F  F  L  *  F  H  L  L  I  S  F  F  F  S  S  S  F  E  L   : D  L  I  V  N  F  V  D  *  N  V  F  W  *  *  L  S  I  C  N  L  N  N  L  D  F  L  V  D  R  N  G  L  F  E  F  G  V  V  I  F  F  *  S  N  S  C  *  *  C  A  C  *  W  R  W  I  K  :  S  K  W  E  V  *  L  W  I  F  *  L  P  G  K  K  V  L  H  G  G  F  L  *  D  K  N  *  W  R  *  W  R  G  S  W  S  L  W  S  F  *  W :   S  W  R  C  *  G  C  R  I  C  E  T  Q  P  F  Q  *  P  D  *  A  S  K  I  Y  L  *  H  Q  I  C  H  R :   L  *  V  S  E  I  R  K  Q  S  A  Q  R  C  W  I  N  C  F  Y  C  H  T  C  G  *  S  S  T  C  C  K  C  G  R  F  *  S  C  Y  L  Q  G  W  H  S :   Y  C  C  F  S  R  P  Q  A  *  P  N  R  *  A  T  A  H  R  R  C  W  R  F  C  D  V  G  R :   Y  L  E  S  W  R  C  T  C  C  F  S  C  F  W  R  *  T  F  K  A  V  R  C  R  *  S  R  N  T   : G  G  K  G  R  W  L  S  *  I  S  H  P  C  K  *  W  T  L  G  R  C  N  E  *   : G  G  C  L  D  G  *  A  D  P  R  S  *  R  C  S  *  E  A  D  A  G  S  I  S  K  R  Q  C  R  *  H  H  H  C  G  C  P  F  S  G  *  P  R  G  F  L  P  R  Y  L  S  L  K  S  N  Y  H  F  *  L  V  V  I  K  R  Q  E  N  P  *  D  V  T  *  I  L  N  I  D  R  F  L  G  L  *  C  K  E  N  L  *  N  *  T  L  S  K  L  S  L  N  L  Y  E  V  F  K  S  E  S  G  H  K  S  N  P  K  L  L  M  F  Y  V  *  H  T  V  A  L  *  Y  I  L  L  F  S  C  N  P  H  F  I  A  F  *  F  T  S  V  *  Q  H  L  L  Y  Y  I  Y  I  V  R  L  F   : *  L  D  T  N  *  N  V  *  K  K  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15136" stop="15245"/>
                    <exon start="17725" stop="17852"/>
                    <exon start="18824" stop="18922"/>
                    <exon start="19035" stop="19172"/>
                    <exon start="20026" stop="20112"/>
                    <exon start="20203" stop="20294"/>
                    <exon start="20688" stop="20762"/>
                    <exon start="20869" stop="21027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIWIFWWIVMGYLNSVLSSSSNQIHADDAPVSGGGLSQNGKFSYGYSSSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIDSEFLKSENNQHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVTNEEAVSMVKPIQDPEDAAKRLMQEAYQRGSADNITIVVVRFLGNQEGSSRGTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21339" PGL_stop="20975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21339" e_stop="20975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="21339" e_stop="20975" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21339" stop="20975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAATATAACAAATGTTGTTATACACTGGTGAATCAAAATGCAATAAAATGGGGATTACAAGAAAACAGCAGTATATATTATAAAGCTACTGTATGTTAAACATAGAACATCAATAATTTGGGATTTGACTTATGCCCAGATTCACTCTTGAACACTTCATACAAGTTGAGAGAAAGCTTTGACAATGTTCAATTCTAAAGATTTTCCTTACATCATAAACCCAGAAATCTATCTATATTCAATATTTACGTTACGTCCTATGGGTTTTCTTGTCGTTTTATTACCACGAGTTAGAAGTGGTAATTACTTTTTAAGCTGAGGTACCTCGGGAGGAACCCTCTTGGTTACCCAGAAAACGGACAA</gDNA_template>
            <first_frame> Y  N  I  T  N  V  V  I  H  W  *  I  K  M  Q  *  N  G  D  Y  K  K  T  A  V  Y  I  I  K  L  L  Y  V  K  H  R  T  S  I  I  W  D  L  T  Y  A  Q  I  H  S  *  T  L  H  T  S  *  E  K  A  L  T  M  F  N  S  K  D  F  P  Y  I  I  N  P  E  I  Y  L  Y  S  I  F  T  L  R  P  M  G  F  L  V  V  L  L  P  R  V  R  S  G  N  Y  F  L  S  *  G  T  S  G  G  T  L  L  V  T  Q  K  T  D   </first_frame>
            <second_frame>  I  I  *  Q  M  L  L  Y  T  G  E  S  K  C  N  K  M  G  I  T  R  K  Q  Q  Y  I  L  *  S  Y  C  M  L  N  I  E  H  Q  *  F  G  I  *  L  M  P  R  F  T  L  E  H  F  I  Q  V  E  R  K  L  *  Q  C  S  I  L  K  I  F  L  T  S  *  T  Q  K  S  I  Y  I  Q  Y  L  R  Y  V  L  W  V  F  L  S  F  Y  Y  H  E  L  E  V  V  I  T  F  *  A  E  V  P  R  E  E  P  S  W  L  P  R  K  R  T  </second_frame>
            <third_frame>   *  Y  N  K  C  C  Y  T  L  V  N  Q  N  A  I  K  W  G  L  Q  E  N  S  S  I  Y  Y  K  A  T  V  C  *  T  *  N  I  N  N  L  G  F  D  L  C  P  D  S  L  L  N  T  S  Y  K  L  R  E  S  F  D  N  V  Q  F  *  R  F  S  L  H  H  K  P  R  N  L  S  I  F  N  I  Y  V  T  S  Y  G  F  S  C  R  F  I  T  T  S  *  K  W  *  L  L  F  K  L  R  Y  L  G  R  N  P  L  G  Y  P  E  N  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27361" PGL_stop="25893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27361" e_stop="26559"/>
            <exon e_start="26467" e_stop="25893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27361" e_stop="26559" e_length="803"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26558" i_stop="26468" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26467" e_stop="25893" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27361" stop="26559"/>
              <exon start="26467" stop="25947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27359" stop="26758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27358" stop="26775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27358" stop="26898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27353" stop="26626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27353" stop="26757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27350" stop="27066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27348" stop="26844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27346" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27344" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27342" stop="26630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27342" stop="26680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27307" stop="26770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27251" stop="26920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27205" stop="26945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27204" stop="26656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27204" stop="26984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27163" stop="26743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27125" stop="26604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27125" stop="26626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26972" stop="26559"/>
              <exon start="26467" stop="26382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26921" stop="26559"/>
              <exon start="26467" stop="26383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="26559"/>
              <exon start="26467" stop="26338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="26559"/>
              <exon start="26467" stop="26303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26836" stop="26559"/>
              <exon start="26467" stop="26165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26652" stop="26559"/>
              <exon start="26467" stop="26072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26596" stop="26559"/>
              <exon start="26467" stop="25893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371425" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26587" stop="26559"/>
              <exon start="26467" stop="26072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230676" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26578" stop="26559"/>
              <exon start="26467" stop="26072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230907" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26577" stop="26559"/>
              <exon start="26467" stop="25893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280545" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26573" stop="26559"/>
              <exon start="26467" stop="26072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218662" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26459" stop="25918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26439" stop="26079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26439" stop="26079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAATAAAAAGCAAATCAATTTTTGATTCTCTCACTTAACACAGAAAGAAAAAACTAATCGAAATAATGGGAACGGAGAATTGGAGTTTAACGGCGAAGTTATGTGACTCATGCAAAACGTCGCCGGCGACGGTGTTCTGCCGGGCAGATTCAGCATTTCTCTGCTTAGGATGTGACTGCAAAATCCACGCAGCGAACAAGTTAGCGTCACGTCACGCGCGTGTCTGGGTTTGTGAAGTGTGTGAGCAAGCTCCGGCGAGTGTCACGTGTAAAGCGGATGCCGCTGCTCTCTGCGTTACGTGTGACCGTGATATTCATTCAGCAAATCCGTTAGCTCGTCGCCATGAGCGTTTTCCGGTAGTTCCGTTCTATGATTTCGCCGTCGCGAAATCTCACGGCGGTGGTGATACCGATGCCGATGCTGTTGATGATGAGAAGTACTTTGATAGTACTAATGAGAATCCTTCTCAACCAGAGGAAGAAGCTGAAGCAGCGTCGTGGATACTTCCGACGCCGAAAGAAGGAACTGATCAGTATAAATCTGCTGATTACTTGTTTAATGATATGGATTCATATTTAGATATAGATCTAATGTCATGTGAGCAAAAACCACATATTCTTCATCATCAACAGCATCAACACAACCATTACAGCTCCGACGGAGTTGTACCAGTACAGAACAACAACGAAACTACTCATTTACCCGGTCCAGTCGTTGATGGATTCCCTACATACGAACTCGATTTCACTGGATCTAAACCTTATATGTACAATTTCACCTCTCAATCGATCAGCCAAAGT : GTTTCATCATCATCTCTTGACGTCGGAGTTGTACCAGACCACAGCACAATGACGGATGTATCAAACACTTTTGTGATGAACTCATCTTCCGGTGCTATTGCCGGCGCCGGCGCCGACGTTGTACCGAATGCAGTTTCCGGTTTAGACAGAGAAGCAAGGGTAATGAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATTCGATATGCTTCTAGAAAAGCTTATGCTGAGACTCGGCCCAGAATCAAAGGGAGATTCGCTAAACGTACTGAAACTGAAATCGATTCACTCATCACCGTCGATGCATCATACGGTGTCGTTCCATCGTTTTAATTATTTTTTATATATATATTTATTATCTCTAATTATTAAAAAAAAAAATTGATATTTTGCTTTTTTCCTCTTTATGTTGTTAGTGAGGAGGATCGTAACTACGTGTATATATATCTAATTTTGTTTCTCTTTTTTTGTATCAAAAAGCTATTAAAAAAATAGAAATTTGTAATGGATAAATTTTGTAGTGAATTATTAAAATTTTCTTATATTTTGTTTAATGATGAAATTTG</gDNA_template>
            <first_frame> K  K  *  K  A  N  Q  F  L  I  L  S  L  N  T  E  R  K  N  *  S  K  *  W  E  R  R  I  G  V  *  R  R  S  Y  V  T  H  A  K  R  R  R  R  R  C  S  A  G  Q  I  Q  H  F  S  A  *  D  V  T  A  K  S  T  Q  R  T  S  *  R  H  V  T  R  V  S  G  F  V  K  C  V  S  K  L  R  R  V  S  R  V  K  R  M  P  L  L  S  A  L  R  V  T  V  I  F  I  Q  Q  I  R  *  L  V  A  M  S  V  F  R  *  F  R  S  M  I  S  P  S  R  N  L  T  A  V  V  I  P  M  P  M  L  L  M  M  R  S  T  L  I  V  L  M  R  I  L  L  N  Q  R  K  K  L  K  Q  R  R  G  Y  F  R  R  R  K  K  E  L  I  S  I  N  L  L  I  T  C  L  M  I  W  I  H  I  *  I  *  I  *  C  H  V  S  K  N  H  I  F  F  I  I  N  S  I  N  T  T  I  T  A  P  T  E  L  Y  Q  Y  R  T  T  T  K  L  L  I  Y  P  V  Q  S  L  M  D  S  L  H  T  N  S  I  S  L  D  L  N  L  I  C  T  I  S  P  L  N  R  S  A  K  V :   F  H  H  H  L  L  T  S  E  L  Y  Q  T  T  A  Q  *  R  M  Y  Q  T  L  L  *  *  T  H  L  P  V  L  L  P  A  P  A  P  T  L  Y  R  M  Q  F  P  V  *  T  E  K  Q  G  *  *  G  T  E  R  R  G  R  I  E  S  S  R  R  R  F  D  M  L  L  E  K  L  M  L  R  L  G  P  E  S  K  G  D  S  L  N  V  L  K  L  K  S  I  H  S  S  P  S  M  H  H  T  V  S  F  H  R  F  N  Y  F  L  Y  I  Y  L  L  S  L  I  I  K  K  K  N  *  Y  F  A  F  F  L  F  M  L  L  V  R  R  I  V  T  T  C  I  Y  I  *  F  C  F  S  F  F  V  S  K  S  Y  *  K  N  R  N  L  *  W  I  N  F  V  V  N  Y  *  N  F  L  I  F  C  L  M  M  K  F  </first_frame>
            <second_frame>  K  N  K  K  Q  I  N  F  *  F  S  H  L  T  Q  K  E  K  T  N  R  N  N  G  N  G  E  L  E  F  N  G  E  V  M  *  L  M  Q  N  V  A  G  D  G  V  L  P  G  R  F  S  I  S  L  L  R  M  *  L  Q  N  P  R  S  E  Q  V  S  V  T  S  R  A  C  L  G  L  *  S  V  *  A  S  S  G  E  C  H  V  *  S  G  C  R  C  S  L  R  Y  V  *  P  *  Y  S  F  S  K  S  V  S  S  S  P  *  A  F  S  G  S  S  V  L  *  F  R  R  R  E  I  S  R  R  W  *  Y  R  C  R  C  C  *  *  *  E  V  L  *  *  Y  *  *  E  S  F  S  T  R  G  R  S  *  S  S  V  V  D  T  S  D  A  E  R  R  N  *  S  V  *  I  C  *  L  L  V  *  *  Y  G  F  I  F  R  Y  R  S  N  V  M  *  A  K  T  T  Y  S  S  S  S  T  A  S  T  Q  P  L  Q  L  R  R  S  C  T  S  T  E  Q  Q  R  N  Y  S  F  T  R  S  S  R  *  W  I  P  Y  I  R  T  R  F  H  W  I  *  T  L  Y  V  Q  F  H  L  S  I  D  Q  P  K   : C  F  I  I  I  S  *  R  R  S  C  T  R  P  Q  H  N  D  G  C  I  K  H  F  C  D  E  L  I  F  R  C  Y  C  R  R  R  R  R  R  C  T  E  C  S  F  R  F  R  Q  R  S  K  G  N  E  V  Q  R  E  E  E  E  *  K  V  R  E  D  D  S  I  C  F  *  K  S  L  C  *  D  S  A  Q  N  Q  R  E  I  R  *  T  Y  *  N  *  N  R  F  T  H  H  R  R  C  I  I  R  C  R  S  I  V  L  I  I  F  Y  I  Y  I  Y  Y  L  *  L  L  K  K  K  I  D  I  L  L  F  S  S  L  C  C  *  *  G  G  S  *  L  R  V  Y  I  S  N  F  V  S  L  F  L  Y  Q  K  A  I  K  K  I  E  I  C  N  G  *  I  L  *  *  I  I  K  I  F  L  Y  F  V  *  *  *  N  L </second_frame>
            <third_frame>   K  I  K  S  K  S  I  F  D  S  L  T  *  H  R  K  K  K  L  I  E  I  M  G  T  E  N  W  S  L  T  A  K  L  C  D  S  C  K  T  S  P  A  T  V  F  C  R  A  D  S  A  F  L  C  L  G  C  D  C  K  I  H  A  A  N  K  L  A  S  R  H  A  R  V  W  V  C  E  V  C  E  Q  A  P  A  S  V  T  C  K  A  D  A  A  A  L  C  V  T  C  D  R  D  I  H  S  A  N  P  L  A  R  R  H  E  R  F  P  V  V  P  F  Y  D  F  A  V  A  K  S  H  G  G  G  D  T  D  A  D  A  V  D  D  E  K  Y  F  D  S  T  N  E  N  P  S  Q  P  E  E  E  A  E  A  A  S  W  I  L  P  T  P  K  E  G  T  D  Q  Y  K  S  A  D  Y  L  F  N  D  M  D  S  Y  L  D  I  D  L  M  S  C  E  Q  K  P  H  I  L  H  H  Q  Q  H  Q  H  N  H  Y  S  S  D  G  V  V  P  V  Q  N  N  N  E  T  T  H  L  P  G  P  V  V  D  G  F  P  T  Y  E  L  D  F  T  G  S  K  P  Y  M  Y  N  F  T  S  Q  S  I  S  Q  S  :  V  S  S  S  S  L  D  V  G  V  V  P  D  H  S  T  M  T  D  V  S  N  T  F  V  M  N  S  S  S  G  A  I  A  G  A  G  A  D  V  V  P  N  A  V  S  G  L  D  R  E  A  R  V  M  R  Y  R  E  K  R  K  N  R  K  F  E  K  T  I  R  Y  A  S  R  K  A  Y  A  E  T  R  P  R  I  K  G  R  F  A  K  R  T  E  T  E  I  D  S  L  I  T  V  D  A  S  Y  G  V  V  P  S  F  *  L  F  F  I  Y  I  F  I  I  S  N  Y  *  K  K  K  L  I  F  C  F  F  P  L  Y  V  V  S  E  E  D  R  N  Y  V  Y  I  Y  L  I  L  F  L  F  F  C  I  K  K  L  L  K  K  *  K  F  V  M  D  K  F  C  S  E  L  L  K  F  S  Y  I  L  F  N  D  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27320" stop="26559"/>
                    <exon start="26467" stop="26126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKKKLIEIMGTENWSLTAKLCDSCKTSPATVFCRADSAFLCLGCDCKIHAANKLASRHARVWVCEVCEQAPASVTCKADAAALCVTCDRDIHSANPLARRHERFPVVPFYDFAVAKSHGGGDTDADAVDDEKYFDSTNENPSQPEEEAEAASWILPTPKEGTDQYKSADYLFNDMDSYLDIDLMSCEQKPHILHHQQHQHNHYSSDGVVPVQNNNETTHLPGPVVDGFPTYELDFTGSKPYMYNFTSQSISQSVSSSSLDVGVVPDHSTMTDVSNTFVMNSSSGAIAGAGADVVPNAVSGLDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETEIDSLITVDASYGVVPSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="26072" PGL_stop="26469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26072" e_stop="26469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="26072" e_stop="26469" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26072" stop="26469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26072" stop="26431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26072" stop="26392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCAATTTTTTTTTTTAATAATTAGAGATAATAAATATATATATAAAAAATAATTAAAACGATGGAACGACACCGTATGATGCATCGACGGTGATGAGTGAATCGATTTCAGTTTCAGTACGTTTAGCGAATCTCCCTTTGATTCTGGGCCGAGTCTCAGCATAAGCTTTTCTAGAAGCATATCGAATCGTCTTCTCGAACTTTCTATTCTTCCTCTTCTCTCTGTACCTCATTACCCTTGCTTCTCTGTCTAAACCGGAAACTGCATTCGGTACAACGTCGGCGCCGGCGCCGGCAATAGCACCGGAAGATGAGTTCATCACAAAAGTGTTTGATACATCCGTCATTGTGCTGTGGTCTGGTACAACTCCGACGTCAAGAGATGATGATGAAACCT</gDNA_template>
            <first_frame> Y  Q  F  F  F  L  I  I  R  D  N  K  Y  I  Y  K  K  *  L  K  R  W  N  D  T  V  *  C  I  D  G  D  E  *  I  D  F  S  F  S  T  F  S  E  S  P  F  D  S  G  P  S  L  S  I  S  F  S  R  S  I  S  N  R  L  L  E  L  S  I  L  P  L  L  S  V  P  H  Y  P  C  F  S  V  *  T  G  N  C  I  R  Y  N  V  G  A  G  A  G  N  S  T  G  R  *  V  H  H  K  S  V  *  Y  I  R  H  C  A  V  V  W  Y  N  S  D  V  K  R  *  *  *  N   </first_frame>
            <second_frame>  I  N  F  F  F  *  *  L  E  I  I  N  I  Y  I  K  N  N  *  N  D  G  T  T  P  Y  D  A  S  T  V  M  S  E  S  I  S  V  S  V  R  L  A  N  L  P  L  I  L  G  R  V  S  A  *  A  F  L  E  A  Y  R  I  V  F  S  N  F  L  F  F  L  F  S  L  Y  L  I  T  L  A  S  L  S  K  P  E  T  A  F  G  T  T  S  A  P  A  P  A  I  A  P  E  D  E  F  I  T  K  V  F  D  T  S  V  I  V  L  W  S  G  T  T  P  T  S  R  D  D  D  E  T  </second_frame>
            <third_frame>   S  I  F  F  F  N  N  *  R  *  *  I  Y  I  *  K  I  I  K  T  M  E  R  H  R  M  M  H  R  R  *  *  V  N  R  F  Q  F  Q  Y  V  *  R  I  S  L  *  F  W  A  E  S  Q  H  K  L  F  *  K  H  I  E  S  S  S  R  T  F  Y  S  S  S  S  L  C  T  S  L  P  L  L  L  C  L  N  R  K  L  H  S  V  Q  R  R  R  R  R  R  Q  *  H  R  K  M  S  S  S  Q  K  C  L  I  H  P  S  L  C  C  G  L  V  Q  L  R  R  Q  E  M  M  M  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26238" stop="26468"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLEAYRIVFSNFLFFLFSLYLITLASLSKPETAFGTTSAPAPAIAPEDEFITKVFDTSVIVLWSGTTPTSRDDDET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36471" PGL_stop="35649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36471" e_stop="35649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36471" e_stop="35649" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36471" stop="35862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36401" stop="35649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36400" stop="35749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36400" stop="35754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36400" stop="35772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACAAAAATTACACTCTCCAAAATGTCAAAATTGAAAATCCAAACTAAAATCGGATTTTTAAATATGAAAAAAAAAATTGTCAAAGGATTTGATATGATGGATAGATCGTTTCTTCGTAAACTAGGGAGCAGTCTCCGAATCAATTAATCGAGCTCCGATACGAATATTCACGCCTTTTTGAGCTCAGTGACTTTGTTCATGATTTTGGTCCCTAAAAACTTCATCTTTCAACTTCTCATCAGCTAATTCTTCATCCTCCATCTCCAATTTCTTCTCAATTTTACTTCCATTTTCATCTCCAAACGAAGAGCTTTTGCTCGAAATTGGCGTAGCTAAAAAAGTTGGATTCAAATCTCCAGCCATTATCACTACAATTTTCTCTTCATAAATCGGCACAAATTTAACTAAATCTCCGGAAGATTTCTCACCGGCGCCGGATTCCAGATCATCGGTACTATCGCTAGTCTCGCCGGAGCGTTTTAAATAAGAACAAGCTAAAATTACAAGTGCAAATGCTATTAACCCTAGCATCGCTGCAACACCGATGAATAGGTACGCCGCCGGTGAATGCCACGGCGATCTCTGGAAACTCTCCACCGGCGAAAAAGTAGTTTTCACCGTTGATTCAACTGGTTCAATTGTTGATGGAGTAGCAATGAAGGTACTCACAGTTCTCATTTTTATTTTTTTTGGCTTAAATATTTTTTTTCTTTTTTCTTAGTTTGAGAAATGAATAAATGGTGTATATGTGTATTTATAATTAGTTTGTAATGTAAAAAGGGAATAAATTTTTAAGAGGGAATAAACAATATTTTATAA</gDNA_template>
            <first_frame> S  N  K  N  Y  T  L  Q  N  V  K  I  E  N  P  N  *  N  R  I  F  K  Y  E  K  K  N  C  Q  R  I  *  Y  D  G  *  I  V  S  S  *  T  R  E  Q  S  P  N  Q  L  I  E  L  R  Y  E  Y  S  R  L  F  E  L  S  D  F  V  H  D  F  G  P  *  K  L  H  L  S  T  S  H  Q  L  I  L  H  P  P  S  P  I  S  S  Q  F  Y  F  H  F  H  L  Q  T  K  S  F  C  S  K  L  A  *  L  K  K  L  D  S  N  L  Q  P  L  S  L  Q  F  S  L  H  K  S  A  Q  I  *  L  N  L  R  K  I  S  H  R  R  R  I  P  D  H  R  Y  Y  R  *  S  R  R  S  V  L  N  K  N  K  L  K  L  Q  V  Q  M  L  L  T  L  A  S  L  Q  H  R  *  I  G  T  P  P  V  N  A  T  A  I  S  G  N  S  P  P  A  K  K  *  F  S  P  L  I  Q  L  V  Q  L  L  M  E  *  Q  *  R  Y  S  Q  F  S  F  L  F  F  L  A  *  I  F  F  F  F  F  L  S  L  R  N  E  *  M  V  Y  M  C  I  Y  N  *  F  V  M  *  K  G  N  K  F  L  R  G  N  K  Q  Y  F  I  </first_frame>
            <second_frame>  Q  T  K  I  T  L  S  K  M  S  K  L  K  I  Q  T  K  I  G  F  L  N  M  K  K  K  I  V  K  G  F  D  M  M  D  R  S  F  L  R  K  L  G  S  S  L  R  I  N  *  S  S  S  D  T  N  I  H  A  F  L  S  S  V  T  L  F  M  I  L  V  P  K  N  F  I  F  Q  L  L  I  S  *  F  F  I  L  H  L  Q  F  L  L  N  F  T  S  I  F  I  S  K  R  R  A  F  A  R  N  W  R  S  *  K  S  W  I  Q  I  S  S  H  Y  H  Y  N  F  L  F  I  N  R  H  K  F  N  *  I  S  G  R  F  L  T  G  A  G  F  Q  I  I  G  T  I  A  S  L  A  G  A  F  *  I  R  T  S  *  N  Y  K  C  K  C  Y  *  P  *  H  R  C  N  T  D  E  *  V  R  R  R  *  M  P  R  R  S  L  E  T  L  H  R  R  K  S  S  F  H  R  *  F  N  W  F  N  C  *  W  S  S  N  E  G  T  H  S  S  H  F  Y  F  F  W  L  K  Y  F  F  S  F  F  L  V  *  E  M  N  K  W  C  I  C  V  F  I  I  S  L  *  C  K  K  G  I  N  F  *  E  G  I  N  N  I  L  * </second_frame>
            <third_frame>   K  Q  K  L  H  S  P  K  C  Q  N  *  K  S  K  L  K  S  D  F  *  I  *  K  K  K  L  S  K  D  L  I  *  W  I  D  R  F  F  V  N  *  G  A  V  S  E  S  I  N  R  A  P  I  R  I  F  T  P  F  *  A  Q  *  L  C  S  *  F  W  S  L  K  T  S  S  F  N  F  S  S  A  N  S  S  S  S  I  S  N  F  F  S  I  L  L  P  F  S  S  P  N  E  E  L  L  L  E  I  G  V  A  K  K  V  G  F  K  S  P  A  I  I  T  T  I  F  S  S  *  I  G  T  N  L  T  K  S  P  E  D  F  S  P  A  P  D  S  R  S  S  V  L  S  L  V  S  P  E  R  F  K  *  E  Q  A  K  I  T  S  A  N  A  I  N  P  S  I  A  A  T  P  M  N  R  Y  A  A  G  E  C  H  G  D  L  W  K  L  S  T  G  E  K  V  V  F  T  V  D  S  T  G  S  I  V  D  G  V  A  M  K  V  L  T  V  L  I  F  I  F  F  G  L  N  I  F  F  L  F  S  *  F  E  K  *  I  N  G  V  Y  V  Y  L  *  L  V  C  N  V  K  R  E  *  I  F  K  R  E  *  T  I  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35980" stop="35747"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQAKITSANAINPSIAATPMNRYAAGECHGDLWKLSTGEKVVFTVDSTGSIVDGVAMKVLTVLIFIFFGLNIFFLFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="41511" PGL_stop="45167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41511" e_stop="41935"/>
            <exon e_start="42015" e_stop="42079"/>
            <exon e_start="43195" e_stop="43257"/>
            <exon e_start="44400" e_stop="44457"/>
            <exon e_start="44520" e_stop="44570"/>
            <exon e_start="44815" e_stop="45167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.815" e_score="0.976"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="41511" e_stop="41935" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.815">
            <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42015" e_stop="42079" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43195" e_stop="43257" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44400" e_stop="44457" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44520" e_stop="44570" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="44571" i_stop="44814" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44815" e_stop="45167" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41511" stop="41935"/>
              <exon start="42015" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41675" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41691" stop="41935"/>
              <exon start="42015" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41723" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41739" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="44852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41758" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41759" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41761" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41873" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43225" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44570"/>
              <exon start="44815" stop="45161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTTTTTGCACAATTGTGGAGAAACAATTTTGAATTTTAAAAAATAATCAAAATTATAATATTTCTATATCCTAGAAGGAAAATAATATTACTTTTTCAATATGTGAGTTTAAAAATAATTTTTATATATATTTTTAAATATTTTAAATTATCGTAACCATAGTAATTTTACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT : ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT : AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA : ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG : GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAG : TATGGTGTTAACGTCAAACATCAAGACTACTTTGCTGATAGCCCGTCTGCCGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTAATGCCTGCTAACAAATCTCTGTGATCACATAAATCTGATGGTTTTAGGTCATTGCGTTGTTGTCATCCTCTTGATTTCTCAAAAGCTATATATCTGTTGGAGGATACAACTCTTGACTACTATGTATCTCTATACTTACCAATGTTAACTGTAGTTGCCACCATTGATAGATTTCTCGTTTCGATATTCCTTTCATGGTAGCAATGAGGGTGATGTTGATAACTGGTTTGAATGTTTAAATTTGCTTTGAACTTGTTGATGAATGTGC</gDNA_template>
            <first_frame> F  F  L  F  C  T  I  V  E  K  Q  F  *  I  L  K  N  N  Q  N  Y  N  I  S  I  S  *  K  E  N  N  I  T  F  S  I  C  E  F  K  N  N  F  Y  I  Y  F  *  I  F  *  I  I  V  T  I  V  I  L  L  T  Y  Y  *  N  I  F  L  Q  F  L  L  P  I  F  F  S  K  *  K  G  T  N  L  P  Q  F  S  S  G  E  I  E  T  P  T  T  A  D  P  P  L  T  L  F  R  R  *  R  *  T  K  V  K  V  N  K  Q  V  K  E  D  T  R  M  M  L  F  *  P  I  S  L  L  P  *  W  T  I  L  P  L :   F  L  M  N  W  W  S  I  T  W  V  K  V  D  F  N  V  L  M  F  D   : *  *  G  W  W  Q  L  L  L  R  S  L  L  Q  M  W  L  L  M  L  S   : N  I  A  R  Q  G  S  Q  L  L  S  R  T  R  E  I  S  S  K  R :   T  N  A  L  P  *  Q  W  M  I  F  Q  N  L  Y  E  S :   M  V  L  T  S  N  I  K  T  T  L  L  I  A  R  L  P  G  *  I  L  L  Q  E  R  N  D  V  M  P  A  N  K  S  L  *  S  H  K  S  D  G  F  R  S  L  R  C  C  H  P  L  D  F  S  K  A  I  Y  L  L  E  D  T  T  L  D  Y  Y  V  S  L  Y  L  P  M  L  T  V  V  A  T  I  D  R  F  L  V  S  I  F  L  S  W  *  Q  *  G  *  C  *  *  L  V  *  M  F  K  F  A  L  N  L  L  M  N  V  </first_frame>
            <second_frame>  F  F  F  F  A  Q  L  W  R  N  N  F  E  F  *  K  I  I  K  I  I  I  F  L  Y  P  R  R  K  I  I  L  L  F  Q  Y  V  S  L  K  I  I  F  I  Y  I  F  K  Y  F  K  L  S  *  P  *  *  F  Y  L  P  I  T  R  I  F  F  F  S  F  F  F  R  F  F  S  Q  S  K  K  A  Q  I  F  P  N  F  P  P  A  K  L  K  L  R  P  P  P  I  L  R  *  L  C  F  D  G  E  D  E  P  K  S  R  S  T  N  K  *  R  K  T  R  G  *  C  C  S  S  R  F  P  C  F  L  D  G  L  Y  S  H   : Y  S  *  *  I  G  G  A  L  L  G  *  K  W  I  S  M  S  *  C  S  I  :  N  K  V  G  G  S  C  Y  S  E  V  Y  C  R  C  G  Y  *  C  S  P  :  T  L  Q  G  K  A  V  N  Y  C  Q  G  Q  E  R  *  A  A  K   : G  Q  T  P  Y  L  D  N  G  *  S  F  K  I  S  T  R   : V  W  C  *  R  Q  T  S  R  L  L  C  *  *  P  V  C  R  V  R  S  C  F  K  R  G  M  M  *  C  L  L  T  N  L  C  D  H  I  N  L  M  V  L  G  H  C  V  V  V  I  L  L  I  S  Q  K  L  Y  I  C  W  R  I  Q  L  L  T  T  M  Y  L  Y  T  Y  Q  C  *  L  *  L  P  P  L  I  D  F  S  F  R  Y  S  F  H  G  S  N  E  G  D  V  D  N  W  F  E  C  L  N  L  L  *  T  C  *  *  M  C </second_frame>
            <third_frame>   F  S  F  L  H  N  C  G  E  T  I  L  N  F  K  K  *  S  K  L  *  Y  F  Y  I  L  E  G  K  *  Y  Y  F  F  N  M  *  V  *  K  *  F  L  Y  I  F  L  N  I  L  N  Y  R  N  H  S  N  F  T  Y  L  L  L  E  Y  F  S  S  V  S  S  S  D  F  F  L  K  V  K  R  H  K  S  S  P  I  F  L  R  R  N  *  N  S  D  H  R  R  S  S  V  D  S  V  S  T  V  K  M  N  Q  S  Q  G  Q  Q  T  S  E  G  R  H  E  D  D  A  V  L  A  D  F  L  A  S  L  M  D  Y  T  P  T  :  I  P  D  E  L  V  E  H  Y  L  G  K  S  G  F  Q  C  P  D  V  R  L :   I  R  L  V  A  V  A  T  Q  K  F  I  A  D  V  A  T  D  A  L  Q :   H  C  K  A  R  Q  S  T  I  V  K  D  K  R  D  K  Q  Q  K  :  D  K  R  L  T  L  T  M  D  D  L  S  K  S  L  R  E  :  Y  G  V  N  V  K  H  Q  D  Y  F  A  D  S  P  S  A  G  L  D  P  A  S  R  E  E  *  C  N  A  C  *  Q  I  S  V  I  T  *  I  *  W  F  *  V  I  A  L  L  S  S  S  *  F  L  K  S  Y  I  S  V  G  G  Y  N  S  *  L  L  C  I  S  I  L  T  N  V  N  C  S  C  H  H  *  *  I  S  R  F  D  I  P  F  M  V  A  M  R  V  M  L  I  T  G  L  N  V  *  I  C  F  E  L  V  D  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41789" stop="41935"/>
                    <exon start="42015" stop="42079"/>
                    <exon start="43195" stop="43257"/>
                    <exon start="44400" stop="44457"/>
                    <exon start="44520" stop="44570"/>
                    <exon start="44815" stop="44895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSDHRRSSVDSVSTVKMNQSQGQQTSEGRHEDDAVLADFLASLMDYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFIADVATDALQHCKARQSTIVKDKRDKQQKDKRLTLTMDDLSKSLREYGVNVKHQDYFADSPSAGLDPASREE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41511" e_stop="41935"/>
            <exon e_start="42015" e_stop="42079"/>
            <exon e_start="43195" e_stop="43257"/>
            <exon e_start="44400" e_stop="44457"/>
            <exon e_start="44520" e_stop="44706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.815" e_score="0.976"/>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="41511" e_stop="41935" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.815">
            <gDNA_intron_boundary i_start="41936" i_stop="42014" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42015" e_stop="42079" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42080" i_stop="43194" i_length="1115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43195" e_stop="43257" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43258" i_stop="44399" i_length="1142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44400" e_stop="44457" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44458" i_stop="44519" i_length="62"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44520" e_stop="44706" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41511" stop="41935"/>
              <exon start="42015" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41691" stop="41935"/>
              <exon start="42015" stop="42079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41757" stop="41935"/>
              <exon start="42015" stop="42079"/>
              <exon start="43195" stop="43257"/>
              <exon start="44400" stop="44457"/>
              <exon start="44520" stop="44706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTTTTTGCACAATTGTGGAGAAACAATTTTGAATTTTAAAAAATAATCAAAATTATAATATTTCTATATCCTAGAAGGAAAATAATATTACTTTTTCAATATGTGAGTTTAAAAATAATTTTTATATATATTTTTAAATATTTTAAATTATCGTAACCATAGTAATTTTACTTACCTATTACTAGAATATTTTTCTTCAGTTTCTTCTTCCGATTTTTTTCTCAAAGTAAAAAGGCACAAATCTTCCCCAATTTTCCTCCGGCGAAATTGAAACTCCGACCACCGCCGATCCTCCGTTGACTCTGTTTCGACGGTGAAGATGAACCAAAGTCAAGGTCAACAAACAAGTGAAGGAAGACACGAGGATGATGCTGTTCTAGCCGATTTCCTTGCTTCCTTGATGGACTATACTCCCACT : ATTCCTGATGAATTGGTGGAGCATTACTTGGGTAAAAGTGGATTTCAATGTCCTGATGTTCGATT : AATAAGGTTGGTGGCAGTTGCTACTCAGAAGTTTATTGCAGATGTGGCTACTGATGCTCTCCA : ACATTGCAAGGCAAGGCAGTCAACTATTGTCAAGGACAAGAGAGATAAGCAGCAAAAG : GACAAACGCCTTACCTTGACAATGGATGATCTTTCAAAATCTCTACGAGAGGTAATCATTCTTTGCTGGCCTATCAAAAAATAATAAAAAGTTATTCATCATTATAATTTCATCTTATTTATTCTATAAATAGTCTGCTGTATAATGCTTTTGACCAATCGAGTGGTCCATCCTTGTAGAACCTCTC</gDNA_template>
            <first_frame> F  F  L  F  C  T  I  V  E  K  Q  F  *  I  L  K  N  N  Q  N  Y  N  I  S  I  S  *  K  E  N  N  I  T  F  S  I  C  E  F  K  N  N  F  Y  I  Y  F  *  I  F  *  I  I  V  T  I  V  I  L  L  T  Y  Y  *  N  I  F  L  Q  F  L  L  P  I  F  F  S  K  *  K  G  T  N  L  P  Q  F  S  S  G  E  I  E  T  P  T  T  A  D  P  P  L  T  L  F  R  R  *  R  *  T  K  V  K  V  N  K  Q  V  K  E  D  T  R  M  M  L  F  *  P  I  S  L  L  P  *  W  T  I  L  P  L :   F  L  M  N  W  W  S  I  T  W  V  K  V  D  F  N  V  L  M  F  D   : *  *  G  W  W  Q  L  L  L  R  S  L  L  Q  M  W  L  L  M  L  S   : N  I  A  R  Q  G  S  Q  L  L  S  R  T  R  E  I  S  S  K  R :   T  N  A  L  P  *  Q  W  M  I  F  Q  N  L  Y  E  R  *  S  F  F  A  G  L  S  K  N  N  K  K  L  F  I  I  I  I  S  S  Y  L  F  Y  K  *  S  A  V  *  C  F  *  P  I  E  W  S  I  L  V  E  P  L </first_frame>
            <second_frame>  F  F  F  F  A  Q  L  W  R  N  N  F  E  F  *  K  I  I  K  I  I  I  F  L  Y  P  R  R  K  I  I  L  L  F  Q  Y  V  S  L  K  I  I  F  I  Y  I  F  K  Y  F  K  L  S  *  P  *  *  F  Y  L  P  I  T  R  I  F  F  F  S  F  F  F  R  F  F  S  Q  S  K  K  A  Q  I  F  P  N  F  P  P  A  K  L  K  L  R  P  P  P  I  L  R  *  L  C  F  D  G  E  D  E  P  K  S  R  S  T  N  K  *  R  K  T  R  G  *  C  C  S  S  R  F  P  C  F  L  D  G  L  Y  S  H   : Y  S  *  *  I  G  G  A  L  L  G  *  K  W  I  S  M  S  *  C  S  I  :  N  K  V  G  G  S  C  Y  S  E  V  Y  C  R  C  G  Y  *  C  S  P  :  T  L  Q  G  K  A  V  N  Y  C  Q  G  Q  E  R  *  A  A  K   : G  Q  T  P  Y  L  D  N  G  *  S  F  K  I  S  T  R  G  N  H  S  L  L  A  Y  Q  K  I  I  K  S  Y  S  S  L  *  F  H  L  I  Y  S  I  N  S  L  L  Y  N  A  F  D  Q  S  S  G  P  S  L  *  N  L   </second_frame>
            <third_frame>   F  S  F  L  H  N  C  G  E  T  I  L  N  F  K  K  *  S  K  L  *  Y  F  Y  I  L  E  G  K  *  Y  Y  F  F  N  M  *  V  *  K  *  F  L  Y  I  F  L  N  I  L  N  Y  R  N  H  S  N  F  T  Y  L  L  L  E  Y  F  S  S  V  S  S  S  D  F  F  L  K  V  K  R  H  K  S  S  P  I  F  L  R  R  N  *  N  S  D  H  R  R  S  S  V  D  S  V  S  T  V  K  M  N  Q  S  Q  G  Q  Q  T  S  E  G  R  H  E  D  D  A  V  L  A  D  F  L  A  S  L  M  D  Y  T  P  T  :  I  P  D  E  L  V  E  H  Y  L  G  K  S  G  F  Q  C  P  D  V  R  L :   I  R  L  V  A  V  A  T  Q  K  F  I  A  D  V  A  T  D  A  L  Q :   H  C  K  A  R  Q  S  T  I  V  K  D  K  R  D  K  Q  Q  K  :  D  K  R  L  T  L  T  M  D  D  L  S  K  S  L  R  E  V  I  I  L  C  W  P  I  K  K  *  *  K  V  I  H  H  Y  N  F  I  L  F  I  L  *  I  V  C  C  I  M  L  L  T  N  R  V  V  H  P  C  R  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41789" stop="41935"/>
                    <exon start="42015" stop="42079"/>
                    <exon start="43195" stop="43257"/>
                    <exon start="44400" stop="44457"/>
                    <exon start="44520" stop="44603"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSDHRRSSVDSVSTVKMNQSQGQQTSEGRHEDDAVLADFLASLMDYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFIADVATDALQHCKARQSTIVKDKRDKQQKDKRLTLTMDDLSKSLREVIILCWPIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="53499" PGL_stop="50543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53499" e_stop="53389"/>
            <exon e_start="52146" e_stop="51553"/>
            <exon e_start="51470" e_stop="51301"/>
            <exon e_start="51149" e_stop="50931"/>
            <exon e_start="50838" e_stop="50543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.946"/>
          <exon-intron don_prob="0.964" acc_prob="0.964" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.596" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="53499" e_stop="53389" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53388" i_stop="52147" i_length="1242"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="52146" e_stop="51553" e_length="594"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.964">
            <gDNA_intron_boundary i_start="51552" i_stop="51471" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51470" e_stop="51301" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.596">
            <gDNA_intron_boundary i_start="51300" i_stop="51150" i_length="151"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51149" e_stop="50931" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50930" i_stop="50839" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50838" e_stop="50543" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53499" stop="53389"/>
              <exon start="52146" stop="51816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51959" stop="51553"/>
              <exon start="51470" stop="51341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51781" stop="51553"/>
              <exon start="51470" stop="51301"/>
              <exon start="51149" stop="50934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51553"/>
              <exon start="51470" stop="51301"/>
              <exon start="51149" stop="50931"/>
              <exon start="50838" stop="50543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548350" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51579" stop="51553"/>
              <exon start="51470" stop="51301"/>
              <exon start="51149" stop="50931"/>
              <exon start="50838" stop="50543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51094" stop="50931"/>
              <exon start="50838" stop="50543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAATGCCAGGCTTAACTTGTAACGCTTGTGACAAGGAATTTGTTGATGATACTGAGCAAAAGCTTCATTACAAATCTGAATGGCACCGATACAATCTTAAACGCAAG : GTTGCAGGAGTTCCTGGAGTGAGAGAGACTATTTTTCTAGCCAGACAGGCTGCACTTGCAGAAGAGAAGGAAAAGTTGAGTGAAACTCCATTGCTATATGCCTGTGGTCTGTGTGACAAAGAGTATAGAAGCTCCAAGGCTCATGCTCAGCATCTGAAATCTAAAAGTCACTTAGCACGGGCTTCTCAACAACCAGGTCATCCTAATGAGAATAGTGTTACAATCAAGCCGCTTCTACGCCACCCTCGAAATGAAACCTCACGCAAGGCCAAAGAGGATGTTATTGAGGAGAATGATGAAAGTGATGAAAGTGAATGGGAGGAGGTTGATCCAGATGAAGAGATGATTAGTGAAGCCACCGATTCTTTGACAGACTTGAAGATGGATGAGCATACATCTAATGGCAATATGGATGAAGATAGCGATGATGAATACGTTGGGAACTTAGACCCTTCGTGTTGCTTCATGTGTGATAAAGAACACAATACCATTGAGAGCTGCATGGTTCACATGCACAAGAATCATGGATTCTTCATCCCTGATGTCGAGTATCTTAAGGATCCCAAAGGGTTCCTTACTTACCTTGGTCTCAAG : GTTAAAAGGGATTTCATGTGCTTGTATTGCAACTACAGATGTCTACCTTTCAGCAGTTTAGAAGCAGTTCGGAAGCATATGGAAGCAAAGAATCATTGCAGAGTGCATTATGGTGATGGTGATGATGATGAAGAAGCTGAATTAGAAGAGTTTTATGACTATAGCAGCAG : CTTTGTTGATGAATCTGGGAAACAGCTCATTTCATCGGATGACACGGGCAACAGTGTGGAACTTGGAAGTGGTGGATCTGAGCTCATAATAACAAGAAGAAATAATGATGGAAGATCTGTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATGATGTGGCTATAAGTGCTGCATTAGCTGCAAG : GTACCGAAGCATGGGTCTTGCAACTGTGCAGTCAAGAGAGCAAATGGTTAAGTTGAAGGTGTTGAGAGCCATGAACAAGTCTGGTGTGGAGATAATGCGCAGTAAGATTGGCATGAAAAGCAACGTCATTCGTAACCTCCCTAAGAACATACCATATTAGTCCTTTCAATAGTAATATTAGCCTTCTAAGAGATTGTTTTGGTGTTTCTGTTATTCCAACTTGTGTAATTCCTCATACTTTATAACTTTTTGGTTTGTATTGTCATATAGATTGTTTGGAAGTGACTTTTATATCT</gDNA_template>
            <first_frame> F  E  M  P  G  L  T  C  N  A  C  D  K  E  F  V  D  D  T  E  Q  K  L  H  Y  K  S  E  W  H  R  Y  N  L  K  R  K  :  V  A  G  V  P  G  V  R  E  T  I  F  L  A  R  Q  A  A  L  A  E  E  K  E  K  L  S  E  T  P  L  L  Y  A  C  G  L  C  D  K  E  Y  R  S  S  K  A  H  A  Q  H  L  K  S  K  S  H  L  A  R  A  S  Q  Q  P  G  H  P  N  E  N  S  V  T  I  K  P  L  L  R  H  P  R  N  E  T  S  R  K  A  K  E  D  V  I  E  E  N  D  E  S  D  E  S  E  W  E  E  V  D  P  D  E  E  M  I  S  E  A  T  D  S  L  T  D  L  K  M  D  E  H  T  S  N  G  N  M  D  E  D  S  D  D  E  Y  V  G  N  L  D  P  S  C  C  F  M  C  D  K  E  H  N  T  I  E  S  C  M  V  H  M  H  K  N  H  G  F  F  I  P  D  V  E  Y  L  K  D  P  K  G  F  L  T  Y  L  G  L  K  :  V  K  R  D  F  M  C  L  Y  C  N  Y  R  C  L  P  F  S  S  L  E  A  V  R  K  H  M  E  A  K  N  H  C  R  V  H  Y  G  D  G  D  D  D  E  E  A  E  L  E  E  F  Y  D  Y  S  S  S :   F  V  D  E  S  G  K  Q  L  I  S  S  D  D  T  G  N  S  V  E  L  G  S  G  G  S  E  L  I  I  T  R  R  N  N  D  G  R  S  V  R  T  L  G  S  R  E  F  L  R  Y  Y  R  Q  K  L  R  P  T  R  T  N  D  V  A  I  S  A  A  L  A  A  R :   Y  R  S  M  G  L  A  T  V  Q  S  R  E  Q  M  V  K  L  K  V  L  R  A  M  N  K  S  G  V  E  I  M  R  S  K  I  G  M  K  S  N  V  I  R  N  L  P  K  N  I  P  Y  *  S  F  Q  *  *  Y  *  P  S  K  R  L  F  W  C  F  C  Y  S  N  L  C  N  S  S  Y  F  I  T  F  W  F  V  L  S  Y  R  L  F  G  S  D  F  Y  I  </first_frame>
            <second_frame>  L  K  C  Q  A  *  L  V  T  L  V  T  R  N  L  L  M  I  L  S  K  S  F  I  T  N  L  N  G  T  D  T  I  L  N  A  R :   L  Q  E  F  L  E  *  E  R  L  F  F  *  P  D  R  L  H  L  Q  K  R  R  K  S  *  V  K  L  H  C  Y  M  P  V  V  C  V  T  K  S  I  E  A  P  R  L  M  L  S  I  *  N  L  K  V  T  *  H  G  L  L  N  N  Q  V  I  L  M  R  I  V  L  Q  S  S  R  F  Y  A  T  L  E  M  K  P  H  A  R  P  K  R  M  L  L  R  R  M  M  K  V  M  K  V  N  G  R  R  L  I  Q  M  K  R  *  L  V  K  P  P  I  L  *  Q  T  *  R  W  M  S  I  H  L  M  A  I  W  M  K  I  A  M  M  N  T  L  G  T  *  T  L  R  V  A  S  C  V  I  K  N  T  I  P  L  R  A  A  W  F  T  C  T  R  I  M  D  S  S  S  L  M  S  S  I  L  R  I  P  K  G  S  L  L  T  L  V  S  R :   L  K  G  I  S  C  A  C  I  A  T  T  D  V  Y  L  S  A  V  *  K  Q  F  G  S  I  W  K  Q  R  I  I  A  E  C  I  M  V  M  V  M  M  M  K  K  L  N  *  K  S  F  M  T  I  A  A   : A  L  L  M  N  L  G  N  S  S  F  H  R  M  T  R  A  T  V  W  N  L  E  V  V  D  L  S  S  *  *  Q  E  E  I  M  M  E  D  L  L  G  L  L  D  Q  E  S  F  C  V  T  T  D  R  N  *  G  L  H  G  P  M  M  W  L  *  V  L  H  *  L  Q   : G  T  E  A  W  V  L  Q  L  C  S  Q  E  S  K  W  L  S  *  R  C  *  E  P  *  T  S  L  V  W  R  *  C  A  V  R  L  A  *  K  A  T  S  F  V  T  S  L  R  T  Y  H  I  S  P  F  N  S  N  I  S  L  L  R  D  C  F  G  V  S  V  I  P  T  C  V  I  P  H  T  L  *  L  F  G  L  Y  C  H  I  D  C  L  E  V  T  F  I  S </second_frame>
            <third_frame>   *  N  A  R  L  N  L  *  R  L  *  Q  G  I  C  *  *  Y  *  A  K  A  S  L  Q  I  *  M  A  P  I  Q  S  *  T  Q   : G  C  R  S  S  W  S  E  R  D  Y  F  S  S  Q  T  G  C  T  C  R  R  E  G  K  V  E  *  N  S  I  A  I  C  L  W  S  V  *  Q  R  V  *  K  L  Q  G  S  C  S  A  S  E  I  *  K  S  L  S  T  G  F  S  T  T  R  S  S  *  *  E  *  C  Y  N  Q  A  A  S  T  P  P  S  K  *  N  L  T  Q  G  Q  R  G  C  Y  *  G  E  *  *  K  *  *  K  *  M  G  G  G  *  S  R  *  R  D  D  *  *  S  H  R  F  F  D  R  L  E  D  G  *  A  Y  I  *  W  Q  Y  G  *  R  *  R  *  *  I  R  W  E  L  R  P  F  V  L  L  H  V  *  *  R  T  Q  Y  H  *  E  L  H  G  S  H  A  Q  E  S  W  I  L  H  P  *  C  R  V  S  *  G  S  Q  R  V  P  Y  L  P  W  S  Q   : G  *  K  G  F  H  V  L  V  L  Q  L  Q  M  S  T  F  Q  Q  F  R  S  S  S  E  A  Y  G  S  K  E  S  L  Q  S  A  L  W  *  W  *  *  *  *  R  S  *  I  R  R  V  L  *  L  *  Q  Q  :  L  C  *  *  I  W  E  T  A  H  F  I  G  *  H  G  Q  Q  C  G  T  W  K  W  W  I  *  A  H  N  N  K  K  K  *  *  W  K  I  C  *  D  S  W  I  K  R  V  F  A  L  L  P  T  E  T  E  A  Y  T  D  Q  *  C  G  Y  K  C  C  I  S  C  K  :  V  P  K  H  G  S  C  N  C  A  V  K  R  A  N  G  *  V  E  G  V  E  S  H  E  Q  V  W  C  G  D  N  A  Q  *  D  W  H  E  K  Q  R  H  S  *  P  P  *  E  H  T  I  L  V  L  S  I  V  I  L  A  F  *  E  I  V  L  V  F  L  L  F  Q  L  V  *  F  L  I  L  Y  N  F  L  V  C  I  V  I  *  I  V  W  K  *  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53499" stop="53389"/>
                    <exon start="52146" stop="51553"/>
                    <exon start="51470" stop="51301"/>
                    <exon start="51149" stop="50931"/>
                    <exon start="50838" stop="50679"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEMPGLTCNACDKEFVDDTEQKLHYKSEWHRYNLKRKVAGVPGVRETIFLARQAALAEEKEKLSETPLLYACGLCDKEYRSSKAHAQHLKSKSHLARASQQPGHPNENSVTIKPLLRHPRNETSRKAKEDVIEENDESDESEWEEVDPDEEMISEATDSLTDLKMDEHTSNGNMDEDSDDEYVGNLDPSCCFMCDKEHNTIESCMVHMHKNHGFFIPDVEYLKDPKGFLTYLGLKVKRDFMCLYCNYRCLPFSSLEAVRKHMEAKNHCRVHYGDGDDDEEAELEEFYDYSSSFVDESGKQLISSDDTGNSVELGSGGSELIITRRNNDGRSVRTLGSREFLRYYRQKLRPTRTNDVAISAALAARYRSMGLATVQSREQMVKLKVLRAMNKSGVEIMRSKIGMKSNVIRNLPKNIPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76282" PGL_stop="74412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76282" e_stop="76249"/>
            <exon e_start="76164" e_stop="76114"/>
            <exon e_start="76033" e_stop="75935"/>
            <exon e_start="75298" e_stop="75134"/>
            <exon e_start="74821" e_stop="74412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76282" e_stop="76249" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76248" i_stop="76165" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76164" e_stop="76114" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="76113" i_stop="76034" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76033" e_stop="75935" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75934" i_stop="75299" i_length="636"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75298" e_stop="75134" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="75133" i_stop="74822" i_length="312"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="74821" e_stop="74412" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76282" stop="76249"/>
              <exon start="76164" stop="76114"/>
              <exon start="76033" stop="75935"/>
              <exon start="75298" stop="75134"/>
              <exon start="74821" stop="74464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76143" stop="76114"/>
              <exon start="76033" stop="75935"/>
              <exon start="75298" stop="75134"/>
              <exon start="74821" stop="74412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372289" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCAGAGATATAACATGGATGGAGTCGCTCAG : GTATTGCTGGCACTTGAGAGAATCGAACAAGATGAAGAGTTATCTTATGAG : CGACTACTGGCGTTGGAGTCCAATTTGTTCCTCAGTGGCCTTAACTTTTATGACCAGCATAGAGACATGAGACTAGATATTGATGACATGTCCTATGAG : GAATTATTAGCACTTGAGGAGAGGATTGGCTCTGTTAGTACCGCTCTGCCCGAGGAAGAACTATCAAAGTGCCTCAGGAGAAACATTTATCAGGGTATGGCTTCAGAAACAGAAACACTAGAAGCTGATGAGGATGGAGATGACATCAAGTGCAGCATTTGTCAG : GAGGAGTACGTGATCGGAGATGAAATAGGGAACCTGGGTTGTGAACACGGGTATCATATGGAGTGCATAAAGCAGTGGTTTAAGCTCAAGAACTGGTGCCCTATCTGTAAGGCTGCAGTAGAATCATCGAAACCGACATCTTAGTTGCAAAATGGTTAGATACCTTAAACCCCAGATGTGGGAAAGCTGTTAAACAGTTTCCCTGTGTACAAATTCATCTGGGGTTGGTTTTTGTGGATTCCTGCAATTCATATTTACTGTTCTCTTTTTCCTCTATTCTCTTGAACTTTTTTTTGTCTCTTTTCTTTTGCTTAATTGCTCTCTTGCCATATGAACCAATAAACCCAGGCCTTCTTCTGGCTTTGTGGTGGTGAATGTTTTCATATTCATTTCCTTCAACATTTGCTAAA</gDNA_template>
            <first_frame> I  A  E  I  *  H  G  W  S  R  S   : G  I  A  G  T  *  E  N  R  T  R  *  R  V  I  L  *   : A  T  T  G  V  G  V  Q  F  V  P  Q  W  P  *  L  L  *  P  A  *  R  H  E  T  R  Y  *  *  H  V  L  *   : G  I  I  S  T  *  G  E  D  W  L  C  *  Y  R  S  A  R  G  R  T  I  K  V  P  Q  E  K  H  L  S  G  Y  G  F  R  N  R  N  T  R  S  *  *  G  W  R  *  H  Q  V  Q  H  L  S   : G  G  V  R  D  R  R  *  N  R  E  P  G  L  *  T  R  V  S  Y  G  V  H  K  A  V  V  *  A  Q  E  L  V  P  Y  L  *  G  C  S  R  I  I  E  T  D  I  L  V  A  K  W  L  D  T  L  N  P  R  C  G  K  A  V  K  Q  F  P  C  V  Q  I  H  L  G  L  V  F  V  D  S  C  N  S  Y  L  L  F  S  F  S  S  I  L  L  N  F  F  L  S  L  F  F  C  L  I  A  L  L  P  Y  E  P  I  N  P  G  L  L  L  A  L  W  W  *  M  F  S  Y  S  F  P  S  T  F  A  K </first_frame>
            <second_frame>  L  Q  R  Y  N  M  D  G  V  A  Q  :  V  L  L  A  L  E  R  I  E  Q  D  E  E  L  S  Y  E  :  R  L  L  A  L  E  S  N  L  F  L  S  G  L  N  F  Y  D  Q  H  R  D  M  R  L  D  I  D  D  M  S  Y  E  :  E  L  L  A  L  E  E  R  I  G  S  V  S  T  A  L  P  E  E  E  L  S  K  C  L  R  R  N  I  Y  Q  G  M  A  S  E  T  E  T  L  E  A  D  E  D  G  D  D  I  K  C  S  I  C  Q  :  E  E  Y  V  I  G  D  E  I  G  N  L  G  C  E  H  G  Y  H  M  E  C  I  K  Q  W  F  K  L  K  N  W  C  P  I  C  K  A  A  V  E  S  S  K  P  T  S  *  L  Q  N  G  *  I  P  *  T  P  D  V  G  K  L  L  N  S  F  P  V  Y  K  F  I  W  G  W  F  L  W  I  P  A  I  H  I  Y  C  S  L  F  P  L  F  S  *  T  F  F  C  L  F  S  F  A  *  L  L  S  C  H  M  N  Q  *  T  Q  A  F  F  W  L  C  G  G  E  C  F  H  I  H  F  L  Q  H  L  L   </second_frame>
            <third_frame>   C  R  D  I  T  W  M  E  S  L  R :   Y  C  W  H  L  R  E  S  N  K  M  K  S  Y  L  M  S :   D  Y  W  R  W  S  P  I  C  S  S  V  A  L  T  F  M  T  S  I  E  T  *  D  *  I  L  M  T  C  P  M  R :   N  Y  *  H  L  R  R  G  L  A  L  L  V  P  L  C  P  R  K  N  Y  Q  S  A  S  G  E  T  F  I  R  V  W  L  Q  K  Q  K  H  *  K  L  M  R  M  E  M  T  S  S  A  A  F  V  R :   R  S  T  *  S  E  M  K  *  G  T  W  V  V  N  T  G  I  I  W  S  A  *  S  S  G  L  S  S  R  T  G  A  L  S  V  R  L  Q  *  N  H  R  N  R  H  L  S  C  K  M  V  R  Y  L  K  P  Q  M  W  E  S  C  *  T  V  S  L  C  T  N  S  S  G  V  G  F  C  G  F  L  Q  F  I  F  T  V  L  F  F  L  Y  S  L  E  L  F  F  V  S  F  L  L  L  N  C  S  L  A  I  *  T  N  K  P  R  P  S  S  G  F  V  V  V  N  V  F  I  F  I  S  F  N  I  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76281" stop="76249"/>
                    <exon start="76164" stop="76114"/>
                    <exon start="76033" stop="75935"/>
                    <exon start="75298" stop="75134"/>
                    <exon start="74821" stop="74678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRYNMDGVAQVLLALERIEQDEELSYERLLALESNLFLSGLNFYDQHRDMRLDIDDMSYEELLALEERIGSVSTALPEEELSKCLRRNIYQGMASETETLEADEDGDDIKCSICQEEYVIGDEIGNLGCEHGYHMECIKQWFKLKNWCPICKAAVESSKPTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79415" PGL_stop="76370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79415" e_stop="79275"/>
            <exon e_start="77470" e_stop="76370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.860" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79415" e_stop="79275" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.860" acc_prob="0.980">
            <gDNA_intron_boundary i_start="79274" i_stop="77471" i_length="1804"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="77470" e_stop="76370" e_length="1101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79415" stop="79275"/>
              <exon start="77470" stop="77002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79396" stop="79275"/>
              <exon start="77470" stop="77185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79328" stop="79275"/>
              <exon start="77470" stop="76945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79328" stop="79275"/>
              <exon start="77470" stop="76975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79328" stop="79275"/>
              <exon start="77470" stop="77142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79304" stop="79275"/>
              <exon start="77470" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79304" stop="79275"/>
              <exon start="77470" stop="77063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77215" stop="76781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77072" stop="76379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77050" stop="76370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77050" stop="76456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTGAAGATTTGTTCGTCTTCTCTATATAGTCTTTCTCCATTTTCATCAGCTTCGATCCTATAATCTCTCTCGTGAAAAAGGGATTTTTTTTCTTTGGGATAAAGAAGAAGAAAACAACGAAAACAGAAGAGAAAAAG : ATATAAATGGTGCTTCGTGTAAGACATGGATGAATATCCTGTTAAAAGAGCTGGGAATGGGCTTGTCGCCGCCAGAAGAGGTTTAAGGGACACTGCTGAAAACAAAGATAAAAATGTTCAGTATTGTTCTAGACTTGGATGTAGTGGCCGGGTCAATTATACTAAGAGTACCAGAGTTGGAGGCATGGAGAAACCGAGACCACTAAGGCCTACTTTCGGTTCATCAAACGGAAAGGAAGTAGTTGGGAGTTCATCTGTGACATCCTCTGGAATGACTACTGCAAGAAGGTCAGGCAAGGAATCTCACAAGAAGTACTCTTCTAACATTGAAGATAAGCGATCAGATACCAGTTCCTTACGTAAAGAGTCACAAGTTTTAAAACAGATGCAGTCATCAACGGAGCGTCAATTCCAATTTGATTCAGCAAAGAGAGATACTGGATCCAGCAAAGTTGTATTTACAGAAGTTGGTTGCTCTAGTGGAACATCGAACAGTAGACCTCGAAAAATATTTGGTCATGGACCTGGTTCTTCCAACCAAAAGAGTCCAATGAATTCCTCTATTTCTTCGTCGTCTAAATCCATTAGTGCTGGGACAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCTCCCATATAGTTCTTCATCATCAGAATCAAGTATTAGTCGAAGGGAAACAGTAAAAAGGAGAAATACTGAAGGTGAAAGCAGTTCATCATCTAAAGGGAAAAAAATGAGTGGTGCATCGCCAAATGAAGGGCGTGCAGTTCGTCCTGCTACTGGAATCTCCATCTCTGATTCAAGGAGTAGTAGAAGCTCGGATTTCAGTGACGGTAATCGTGCTGTATCAGTTCGGACCCGCAGGTCAATGAATGTGAGTACTAGGTTAAGGGGTCCTGTTCAGGATTCATTGCATACTAAGTCTTCTGGCTTAAGCCAAAATTTACCTGAGCATGGAACTCCAAATCTAGATATGCCTAGTTCATCCAGTCAACTTTTCATGGATTCTTCATCAAGTGATTATAGCACATATAGTTTACCTGCAAATGATTATGATGATGACGA</gDNA_template>
            <first_frame> F  V  E  D  L  F  V  F  S  I  *  S  F  S  I  F  I  S  F  D  P  I  I  S  L  V  K  K  G  F  F  F  F  G  I  K  K  K  K  T  T  K  T  E  E  K  K  :  I  *  M  V  L  R  V  R  H  G  *  I  S  C  *  K  S  W  E  W  A  C  R  R  Q  K  R  F  K  G  H  C  *  K  Q  R  *  K  C  S  V  L  F  *  T  W  M  *  W  P  G  Q  L  Y  *  E  Y  Q  S  W  R  H  G  E  T  E  T  T  K  A  Y  F  R  F  I  K  R  K  G  S  S  W  E  F  I  C  D  I  L  W  N  D  Y  C  K  K  V  R  Q  G  I  S  Q  E  V  L  F  *  H  *  R  *  A  I  R  Y  Q  F  L  T  *  R  V  T  S  F  K  T  D  A  V  I  N  G  A  S  I  P  I  *  F  S  K  E  R  Y  W  I  Q  Q  S  C  I  Y  R  S  W  L  L  *  W  N  I  E  Q  *  T  S  K  N  I  W  S  W  T  W  F  F  Q  P  K  E  S  N  E  F  L  Y  F  F  V  V  *  I  H  *  C  W  D  K  E  Q  *  *  W  R  G  I  Q  V  E  K  S  E  V  Q  F  H  T  *  C  P  P  I  *  F  F  I  I  R  I  K  Y  *  S  K  G  N  S  K  K  E  K  Y  *  R  *  K  Q  F  I  I  *  R  E  K  N  E  W  C  I  A  K  *  R  A  C  S  S  S  C  Y  W  N  L  H  L  *  F  K  E  *  *  K  L  G  F  Q  *  R  *  S  C  C  I  S  S  D  P  Q  V  N  E  C  E  Y  *  V  K  G  S  C  S  G  F  I  A  Y  *  V  F  W  L  K  P  K  F  T  *  A  W  N  S  K  S  R  Y  A  *  F  I  Q  S  T  F  H  G  F  F  I  K  *  L  *  H  I  *  F  T  C  K  *  L  *  *  *  R </first_frame>
            <second_frame>  L  L  K  I  C  S  S  S  L  Y  S  L  S  P  F  S  S  A  S  I  L  *  S  L  S  *  K  R  D  F  F  S  L  G  *  R  R  R  K  Q  R  K  Q  K  R  K  R :   Y  K  W  C  F  V  *  D  M  D  E  Y  P  V  K  R  A  G  N  G  L  V  A  A  R  R  G  L  R  D  T  A  E  N  K  D  K  N  V  Q  Y  C  S  R  L  G  C  S  G  R  V  N  Y  T  K  S  T  R  V  G  G  M  E  K  P  R  P  L  R  P  T  F  G  S  S  N  G  K  E  V  V  G  S  S  S  V  T  S  S  G  M  T  T  A  R  R  S  G  K  E  S  H  K  K  Y  S  S  N  I  E  D  K  R  S  D  T  S  S  L  R  K  E  S  Q  V  L  K  Q  M  Q  S  S  T  E  R  Q  F  Q  F  D  S  A  K  R  D  T  G  S  S  K  V  V  F  T  E  V  G  C  S  S  G  T  S  N  S  R  P  R  K  I  F  G  H  G  P  G  S  S  N  Q  K  S  P  M  N  S  S  I  S  S  S  S  K  S  I  S  A  G  T  R  S  S  S  S  G  E  G  Y  R  L  R  N  L  K  C  N  S  T  P  D  V  L  P  Y  S  S  S  S  S  E  S  S  I  S  R  R  E  T  V  K  R  R  N  T  E  G  E  S  S  S  S  S  K  G  K  K  M  S  G  A  S  P  N  E  G  R  A  V  R  P  A  T  G  I  S  I  S  D  S  R  S  S  R  S  S  D  F  S  D  G  N  R  A  V  S  V  R  T  R  R  S  M  N  V  S  T  R  L  R  G  P  V  Q  D  S  L  H  T  K  S  S  G  L  S  Q  N  L  P  E  H  G  T  P  N  L  D  M  P  S  S  S  S  Q  L  F  M  D  S  S  S  S  D  Y  S  T  Y  S  L  P  A  N  D  Y  D  D  D   </second_frame>
            <third_frame>   C  *  R  F  V  R  L  L  Y  I  V  F  L  H  F  H  Q  L  R  S  Y  N  L  S  R  E  K  G  I  F  F  L  W  D  K  E  E  E  N  N  E  N  R  R  E  K   : D  I  N  G  A  S  C  K  T  W  M  N  I  L  L  K  E  L  G  M  G  L  S  P  P  E  E  V  *  G  T  L  L  K  T  K  I  K  M  F  S  I  V  L  D  L  D  V  V  A  G  S  I  I  L  R  V  P  E  L  E  A  W  R  N  R  D  H  *  G  L  L  S  V  H  Q  T  E  R  K  *  L  G  V  H  L  *  H  P  L  E  *  L  L  Q  E  G  Q  A  R  N  L  T  R  S  T  L  L  T  L  K  I  S  D  Q  I  P  V  P  Y  V  K  S  H  K  F  *  N  R  C  S  H  Q  R  S  V  N  S  N  L  I  Q  Q  R  E  I  L  D  P  A  K  L  Y  L  Q  K  L  V  A  L  V  E  H  R  T  V  D  L  E  K  Y  L  V  M  D  L  V  L  P  T  K  R  V  Q  *  I  P  L  F  L  R  R  L  N  P  L  V  L  G  Q  G  A  V  V  V  E  R  D  T  G  *  E  I  *  S  A  I  P  H  L  M  S  S  H  I  V  L  H  H  Q  N  Q  V  L  V  E  G  K  Q  *  K  G  E  I  L  K  V  K  A  V  H  H  L  K  G  K  K  *  V  V  H  R  Q  M  K  G  V  Q  F  V  L  L  L  E  S  P  S  L  I  Q  G  V  V  E  A  R  I  S  V  T  V  I  V  L  Y  Q  F  G  P  A  G  Q  *  M  *  V  L  G  *  G  V  L  F  R  I  H  C  I  L  S  L  L  A  *  A  K  I  Y  L  S  M  E  L  Q  I  *  I  C  L  V  H  P  V  N  F  S  W  I  L  H  Q  V  I  I  A  H  I  V  Y  L  Q  M  I  M  M  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77448" stop="76372"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMDEYPVKRAGNGLVAARRGLRDTAENKDKNVQYCSRLGCSGRVNYTKSTRVGGMEKPRPLRPTFGSSNGKEVVGSSSVTSSGMTTARRSGKESHKKYSSNIEDKRSDTSSLRKESQVLKQMQSSTERQFQFDSAKRDTGSSKVVFTEVGCSSGTSNSRPRKIFGHGPGSSNQKSPMNSSISSSSKSISAGTRSSSSGEGYRLRNLKCNSTPDVLPYSSSSSESSISRRETVKRRNTEGESSSSSKGKKMSGASPNEGRAVRPATGISISDSRSSRSSDFSDGNRAVSVRTRRSMNVSTRLRGPVQDSLHTKSSGLSQNLPEHGTPNLDMPSSSSQLFMDSSSSDYSTYSLPANDYDDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90014" PGL_stop="89459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90014" e_stop="89459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90014" e_stop="89459" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90014" stop="89459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTAGGAATACATTCATGGGAAATTGCAAAAAATAAAACAAACATTTAACTTTTGGCATTTTAATGCAATATAAGGAAAATGCACATATTAAATGGGAGTCTTTGAATAAGCTGTCTACATTATACCCTTGAGGTGCGGCTCTTCCTTGAACCCTAATCCTGCATGAATGCGGAATATGTTGTGCACTGGCTAAAAAACATAATCAACAAAAGAAAACAGAAAGAAAGACAAATTAATAGCACCTTTTTAATCAAAATAGATGATCCATGACCTCCACTATATTAGATAGATAGATAGATTATTGATAGGGAAAAGAAACTTAAAAGAGAATTGTGAAGAAAAAGATTTAAAATAAATAGGAAAGAAAAGTAAAGAAAAAAAAGGTTGAAGAAATAGAGAGATTGATGAACTTGAAAAGAGTTATTTTTGGGAGTTTGGTTGTTATATTAAGTACGAAAATTATGGATAACCCAAGGTTGTGGAAGCACATAAACACAAAGATGTAATTATCATTACAGCTCATATAAAAATTATTAAATACTATAATATTAC</gDNA_template>
            <first_frame> I  S  R  N  T  F  M  G  N  C  K  K  *  N  K  H  L  T  F  G  I  L  M  Q  Y  K  E  N  A  H  I  K  W  E  S  L  N  K  L  S  T  L  Y  P  *  G  A  A  L  P  *  T  L  I  L  H  E  C  G  I  C  C  A  L  A  K  K  H  N  Q  Q  K  K  T  E  R  K  T  N  *  *  H  L  F  N  Q  N  R  *  S  M  T  S  T  I  L  D  R  *  I  D  Y  *  *  G  K  E  T  *  K  R  I  V  K  K  K  I  *  N  K  *  E  R  K  V  K  K  K  K  V  E  E  I  E  R  L  M  N  L  K  R  V  I  F  G  S  L  V  V  I  L  S  T  K  I  M  D  N  P  R  L  W  K  H  I  N  T  K  M  *  L  S  L  Q  L  I  *  K  L  L  N  T  I  I  L  </first_frame>
            <second_frame>  S  L  G  I  H  S  W  E  I  A  K  N  K  T  N  I  *  L  L  A  F  *  C  N  I  R  K  M  H  I  L  N  G  S  L  *  I  S  C  L  H  Y  T  L  E  V  R  L  F  L  E  P  *  S  C  M  N  A  E  Y  V  V  H  W  L  K  N  I  I  N  K  R  K  Q  K  E  R  Q  I  N  S  T  F  L  I  K  I  D  D  P  *  P  P  L  Y  *  I  D  R  *  I  I  D  R  E  K  K  L  K  R  E  L  *  R  K  R  F  K  I  N  R  K  E  K  *  R  K  K  R  L  K  K  *  R  D  *  *  T  *  K  E  L  F  L  G  V  W  L  L  Y  *  V  R  K  L  W  I  T  Q  G  C  G  S  T  *  T  Q  R  C  N  Y  H  Y  S  S  Y  K  N  Y  *  I  L  *  Y  Y </second_frame>
            <third_frame>   L  *  E  Y  I  H  G  K  L  Q  K  I  K  Q  T  F  N  F  W  H  F  N  A  I  *  G  K  C  T  Y  *  M  G  V  F  E  *  A  V  Y  I  I  P  L  R  C  G  S  S  L  N  P  N  P  A  *  M  R  N  M  L  C  T  G  *  K  T  *  S  T  K  E  N  R  K  K  D  K  L  I  A  P  F  *  S  K  *  M  I  H  D  L  H  Y  I  R  *  I  D  R  L  L  I  G  K  R  N  L  K  E  N  C  E  E  K  D  L  K  *  I  G  K  K  S  K  E  K  K  G  *  R  N  R  E  I  D  E  L  E  K  S  Y  F  W  E  F  G  C  Y  I  K  Y  E  N  Y  G  *  P  K  V  V  E  A  H  K  H  K  D  V  I  I  I  T  A  H  I  K  I  I  K  Y  Y  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90454" PGL_stop="90672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90454" e_stop="90672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="90454" e_stop="90672" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90454" stop="90672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAGTCCATTTGGTGACTTTTTCATAAGTTTAACTTATTACTATTCTTTTGCAGCAAAATACAAGTTCAAAATCTAGTTAAGCCAAAGAATATAATGGCAACAAGGGCAAAGGAGACTGCTCCAGCAGGAAAGGAGAAGAGAGGGGTATCTCCATCACATCCCATTCCTAATTATATGAGAAGTCCTAATTCATCAACTACAAACTCTCCGGTGCGG</gDNA_template>
            <first_frame> *  K  S  I  W  *  L  F  H  K  F  N  L  L  L  F  F  C  S  K  I  Q  V  Q  N  L  V  K  P  K  N  I  M  A  T  R  A  K  E  T  A  P  A  G  K  E  K  R  G  V  S  P  S  H  P  I  P  N  Y  M  R  S  P  N  S  S  T  T  N  S  P  V  R </first_frame>
            <second_frame>  R  S  P  F  G  D  F  F  I  S  L  T  Y  Y  Y  S  F  A  A  K  Y  K  F  K  I  *  L  S  Q  R  I  *  W  Q  Q  G  Q  R  R  L  L  Q  Q  E  R  R  R  E  G  Y  L  H  H  I  P  F  L  I  I  *  E  V  L  I  H  Q  L  Q  T  L  R  C   </second_frame>
            <third_frame>   E  V  H  L  V  T  F  S  *  V  *  L  I  T  I  L  L  Q  Q  N  T  S  S  K  S  S  *  A  K  E  Y  N  G  N  K  G  K  G  D  C  S  S  R  K  G  E  E  R  G  I  S  I  T  S  H  S  *  L  Y  E  K  S  *  F  I  N  Y  K  L  S  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90472" stop="90672"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFHKFNLLLFFCSKIQVQNLVKPKNIMATRAKETAPAGKEKRGVSPSHPIPNYMRSPNSSTTNSPVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91234" PGL_stop="90458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91234" e_stop="90458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91234" e_stop="90458" e_length="777"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91234" stop="90824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91233" stop="90458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91233" stop="90508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91233" stop="90518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGCTTTAGGTGTTAAATCATTGTGACTATCCTGATCGTTGCTCGACTTGTATATGTCGTCTTCATCAGTTTCAGCCTGCAGAATGGCATCCTCCACAGCATGAGAAGAATTAGTTATTGATGCTTTTGGTGTTGAACTATTGTGACCATCTTGATTATTTCTTGTTTTGTGTGTGCCATTATGAATAGTCCTGCCAGCCTCCTGTTTCTTGGAGATTATGCCAGTAGTTGTGCTCTTCTTTATTGTCCCTGGTCTAGCATTCGTGCTAGTGCCACGTTGTTTACTGGTGGCATCCTTACTCATATGAGATGCTCTGGATAATCTATCCGTCGTGGGTTTCTGGGATGTTGAACTTTTGCCTGAAAACGATGAGGATGACCGAAGAATTCTCTCTTTAGGATTAGCGCTTTTTTGCAAAGTAGCAAGAGGAGGCTTATCGAATGATCTTCTTCGATCTAGAGTAGGTTTATTGTGAATGTTGAGATCACCTGATGAAGACATTGTAGGCTTGAGATAGTTGGGAACATTCTTGTTTGATGTAGTTGAATCTGCTCGCTTCCGCACCGGAGAGTTTGTAGTTGATGAATTAGGACTTCTCATATAATTAGGAATGGGATGTGATGGAGATACCCCTCTCTTCTCCTTTCCTGCTGGAGCAGTCTCCTTTGCCCTTGTTGCCATTATATTCTTTGGCTTAACTAGATTTTGAACTTGTATTTTGCTGCAAAAGAATAGTAATAAGTTAAACTTATGAAAAAGTCACCAAATGGACT</gDNA_template>
            <first_frame> L  M  L  *  V  L  N  H  C  D  Y  P  D  R  C  S  T  C  I  C  R  L  H  Q  F  Q  P  A  E  W  H  P  P  Q  H  E  K  N  *  L  L  M  L  L  V  L  N  Y  C  D  H  L  D  Y  F  L  F  C  V  C  H  Y  E  *  S  C  Q  P  P  V  S  W  R  L  C  Q  *  L  C  S  S  L  L  S  L  V  *  H  S  C  *  C  H  V  V  Y  W  W  H  P  Y  S  Y  E  M  L  W  I  I  Y  P  S  W  V  S  G  M  L  N  F  C  L  K  T  M  R  M  T  E  E  F  S  L  *  D  *  R  F  F  A  K  *  Q  E  E  A  Y  R  M  I  F  F  D  L  E  *  V  Y  C  E  C  *  D  H  L  M  K  T  L  *  A  *  D  S  W  E  H  S  C  L  M  *  L  N  L  L  A  S  A  P  E  S  L  *  L  M  N  *  D  F  S  Y  N  *  E  W  D  V  M  E  I  P  L  S  S  P  F  L  L  E  Q  S  P  L  P  L  L  P  L  Y  S  L  A  *  L  D  F  E  L  V  F  C  C  K  R  I  V  I  S  *  T  Y  E  K  V  T  K  W  T </first_frame>
            <second_frame>  *  C  F  R  C  *  I  I  V  T  I  L  I  V  A  R  L  V  Y  V  V  F  I  S  F  S  L  Q  N  G  I  L  H  S  M  R  R  I  S  Y  *  C  F  W  C  *  T  I  V  T  I  L  I  I  S  C  F  V  C  A  I  M  N  S  P  A  S  L  L  F  L  G  D  Y  A  S  S  C  A  L  L  Y  C  P  W  S  S  I  R  A  S  A  T  L  F  T  G  G  I  L  T  H  M  R  C  S  G  *  S  I  R  R  G  F  L  G  C  *  T  F  A  *  K  R  *  G  *  P  K  N  S  L  F  R  I  S  A  F  L  Q  S  S  K  R  R  L  I  E  *  S  S  S  I  *  S  R  F  I  V  N  V  E  I  T  *  *  R  H  C  R  L  E  I  V  G  N  I  L  V  *  C  S  *  I  C  S  L  P  H  R  R  V  C  S  *  *  I  R  T  S  H  I  I  R  N  G  M  *  W  R  Y  P  S  L  L  L  S  C  W  S  S  L  L  C  P  C  C  H  Y  I  L  W  L  N  *  I  L  N  L  Y  F  A  A  K  E  *  *  *  V  K  L  M  K  K  S  P  N  G   </second_frame>
            <third_frame>   D  A  L  G  V  K  S  L  *  L  S  *  S  L  L  D  L  Y  M  S  S  S  S  V  S  A  C  R  M  A  S  S  T  A  *  E  E  L  V  I  D  A  F  G  V  E  L  L  *  P  S  *  L  F  L  V  L  C  V  P  L  *  I  V  L  P  A  S  C  F  L  E  I  M  P  V  V  V  L  F  F  I  V  P  G  L  A  F  V  L  V  P  R  C  L  L  V  A  S  L  L  I  *  D  A  L  D  N  L  S  V  V  G  F  W  D  V  E  L  L  P  E  N  D  E  D  D  R  R  I  L  S  L  G  L  A  L  F  C  K  V  A  R  G  G  L  S  N  D  L  L  R  S  R  V  G  L  L  *  M  L  R  S  P  D  E  D  I  V  G  L  R  *  L  G  T  F  L  F  D  V  V  E  S  A  R  F  R  T  G  E  F  V  V  D  E  L  G  L  L  I  *  L  G  M  G  C  D  G  D  T  P  L  F  S  F  P  A  G  A  V  S  F  A  L  V  A  I  I  F  F  G  L  T  R  F  *  T  C  I  L  L  Q  K  N  S  N  K  L  N  L  *  K  S  H  Q  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="91685" PGL_stop="92312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91685" e_stop="91862"/>
            <exon e_start="92209" e_stop="92312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.989"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="91685" e_stop="91862" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91863" i_stop="92208" i_length="346"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="92209" e_stop="92312" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91685" stop="91862"/>
              <exon start="92209" stop="92312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241593" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAATACTATTGTAGCTTCATCAAGACCTCAACGTCAAGTGGTGCAAGGGAAGAAGGAATCCGTGGTCTCCAATAATGTGATTGAAGAGACTGCAAGTAAGCTTAGAGAGCAAAGAAAGAACAGAGTGAAAGCACTGGCTGGTGCCTTTGAAACTGTCATCTCCTTGCAGGAGCCCAA : GGCGTAAATTAGAACTTAAAACTGGACATGCTTGGAGTGAAAGATCAGAGTCAGACACGATGCTACAGTATGGCCGATAGGGAATGGGTCGGAAAGGTATTCCA</gDNA_template>
            <first_frame> L  I  L  L  *  L  H  Q  D  L  N  V  K  W  C  K  G  R  R  N  P  W  S  P  I  M  *  L  K  R  L  Q  V  S  L  E  S  K  E  R  T  E  *  K  H  W  L  V  P  L  K  L  S  S  P  C  R  S  P   : R  R  K  L  E  L  K  T  G  H  A  W  S  E  R  S  E  S  D  T  M  L  Q  Y  G  R  *  G  M  G  R  K  G  I  P </first_frame>
            <second_frame>  *  Y  Y  C  S  F  I  K  T  S  T  S  S  G  A  R  E  E  G  I  R  G  L  Q  *  C  D  *  R  D  C  K  *  A  *  R  A  K  K  E  Q  S  E  S  T  G  W  C  L  *  N  C  H  L  L  A  G  A  Q  :  G  V  N  *  N  L  K  L  D  M  L  G  V  K  D  Q  S  Q  T  R  C  Y  S  M  A  D  R  E  W  V  G  K  V  F   </second_frame>
            <third_frame>   N  T  I  V  A  S  S  R  P  Q  R  Q  V  V  Q  G  K  K  E  S  V  V  S  N  N  V  I  E  E  T  A  S  K  L  R  E  Q  R  K  N  R  V  K  A  L  A  G  A  F  E  T  V  I  S  L  Q  E  P  K :   A  *  I  R  T  *  N  W  T  C  L  E  *  K  I  R  V  R  H  D  A  T  V  W  P  I  G  N  G  S  E  R  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="93138" PGL_stop="92486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93138" e_stop="92486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="93138" e_stop="92486" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93138" stop="92486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACACTATGCATCTTCTCAGATTAAAATGAAAATTCTTCAAATCTTCTGATTATTTTGTCGTTTACTGAAATAGATATACTGCTGCAGCTTTGTGGCAGTTGCTGTACACTGGTATACCGTTTATGTAGTCCTTGTTTGAAGGGCTTCCCTAGTAGTTAGAGAGATTGTCCAATTTTAAAGTCTATAAACAGGTAGTAATTGGATCATGCAATCATCTAATCAATCATGACAACAGTCAATCCAATCATTTCCATTTCAGTTCGTCCAAGCAATTCATATTACTTTTAATTACAAGCTTTATACTACTTCTCTTACCATACACTACACTTATGTTAGTTATTAGTTAAGTCCAATTCTTTCATGTCAGTTTTTACGTAACTTTCGGTATTAGGATGCTATCAAGTAGTCTAGGAATGTAATGTTGAGAGGTAGAATCTCCTTTTTCTACATTGATACTCTAATAGCAGTTGATAATCATTCAATGATATTTTGATTTATCATTTGATCTGATACATTACCATTTTTGGCCATCAACAATCCTATAAAATAAATTTCATGACCACCAGAACCTGTGGCAAATTCAAAGGGAAATATTACATGTGTATACAAATCTGATTTATACACGAATCACCAGTTTTTTTTCTCTCTCTG</gDNA_template>
            <first_frame> L  H  Y  A  S  S  Q  I  K  M  K  I  L  Q  I  F  *  L  F  C  R  L  L  K  *  I  Y  C  C  S  F  V  A  V  A  V  H  W  Y  T  V  Y  V  V  L  V  *  R  A  S  L  V  V  R  E  I  V  Q  F  *  S  L  *  T  G  S  N  W  I  M  Q  S  S  N  Q  S  *  Q  Q  S  I  Q  S  F  P  F  Q  F  V  Q  A  I  H  I  T  F  N  Y  K  L  Y  T  T  S  L  T  I  H  Y  T  Y  V  S  Y  *  L  S  P  I  L  S  C  Q  F  L  R  N  F  R  Y  *  D  A  I  K  *  S  R  N  V  M  L  R  G  R  I  S  F  F  Y  I  D  T  L  I  A  V  D  N  H  S  M  I  F  *  F  I  I  *  S  D  T  L  P  F  L  A  I  N  N  P  I  K  *  I  S  *  P  P  E  P  V  A  N  S  K  G  N  I  T  C  V  Y  K  S  D  L  Y  T  N  H  Q  F  F  F  S  L   </first_frame>
            <second_frame>  Y  T  M  H  L  L  R  L  K  *  K  F  F  K  S  S  D  Y  F  V  V  Y  *  N  R  Y  T  A  A  A  L  W  Q  L  L  Y  T  G  I  P  F  M  *  S  L  F  E  G  L  P  *  *  L  E  R  L  S  N  F  K  V  Y  K  Q  V  V  I  G  S  C  N  H  L  I  N  H  D  N  S  Q  S  N  H  F  H  F  S  S  S  K  Q  F  I  L  L  L  I  T  S  F  I  L  L  L  L  P  Y  T  T  L  M  L  V  I  S  *  V  Q  F  F  H  V  S  F  Y  V  T  F  G  I  R  M  L  S  S  S  L  G  M  *  C  *  E  V  E  S  P  F  S  T  L  I  L  *  *  Q  L  I  I  I  Q  *  Y  F  D  L  S  F  D  L  I  H  Y  H  F  W  P  S  T  I  L  *  N  K  F  H  D  H  Q  N  L  W  Q  I  Q  R  E  I  L  H  V  Y  T  N  L  I  Y  T  R  I  T  S  F  F  S  L  S  </second_frame>
            <third_frame>   T  L  C  I  F  S  D  *  N  E  N  S  S  N  L  L  I  I  L  S  F  T  E  I  D  I  L  L  Q  L  C  G  S  C  C  T  L  V  Y  R  L  C  S  P  C  L  K  G  F  P  S  S  *  R  D  C  P  I  L  K  S  I  N  R  *  *  L  D  H  A  I  I  *  S  I  M  T  T  V  N  P  I  I  S  I  S  V  R  P  S  N  S  Y  Y  F  *  L  Q  A  L  Y  Y  F  S  Y  H  T  L  H  L  C  *  L  L  V  K  S  N  S  F  M  S  V  F  T  *  L  S  V  L  G  C  Y  Q  V  V  *  E  C  N  V  E  R  *  N  L  L  F  L  H  *  Y  S  N  S  S  *  *  S  F  N  D  I  L  I  Y  H  L  I  *  Y  I  T  I  F  G  H  Q  Q  S  Y  K  I  N  F  M  T  T  R  T  C  G  K  F  K  G  K  Y  Y  M  C  I  Q  I  *  F  I  H  E  S  P  V  F  F  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="95688" PGL_stop="93715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95688" e_stop="95231"/>
            <exon e_start="94100" e_stop="93715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="0.969"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="95688" e_stop="95231" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95230" i_stop="94101" i_length="1130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94100" e_stop="93715" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95688" stop="95231"/>
              <exon start="94100" stop="93838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95637" stop="95234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95616" stop="95231"/>
              <exon start="94100" stop="93715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95615" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95595" stop="95231"/>
              <exon start="94100" stop="93737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95594" stop="95231"/>
              <exon start="94100" stop="93715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95578" stop="95231"/>
              <exon start="94100" stop="93882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGGCAAAAAAGGAACTTGAAAAAAAAAAACAGATATGGGCACTCCATTCTGCTCTCGTTATGCTTCTCTCAACTTCACGCATTTTTCCCCCAGCTTAGCTCCGGCGATTCAGTTAACGTTCAGCACTACTTTCCGGCGACGGAACGTCGGCGTAGTATCTCGAATGGAATCAACATCCATTTCTCCCTCCGGCGGCTCCGGCACTACCGCCGTCAGCGCCATTGCTGCCGGCGGCGATGCGACCACAACCGGCAGCAATAGTACAGAGGAGAGCTCGATTACCGATACGGTGGTTCAGTATGTTGTTCTACGGAGAGATTTGATTGATACATGGCCGTTAGGAAGTGTGGTTACGCAAGGCTGCCATGCCGCCGTCGCCGCCATTTGGTCTCACAAAGACGATGCTGTTACTCTTCAATATTGTAGCCCTTCCAATATCGATTCGATGCATAAG : GTAACCCTTGAAGTGAAGGGTGAAACCCAGATATTGAACTTGGCAGAAAAGCTAAAAGCTGGGGGCATTGCTCATAAACTGTGGATTGAACAACCAGAAAACATACCAACCTGTCTTGCTACAAAACCTTATCCAAAATCCCTGGTATCTTCATTTTTCAAGAAGCTAAAACTTTGTAAATGATGAATTTCAAGTGTCGTCCGTTTATGTGATACTGACACAAGTAGGCTTAGTTTCAGTGTTATGGAATTGAACCTATTTGCTAATGATGAGCTACTCTTTGTAATGATTAATATTTCTTGCTGAACCCTTTGACCTTTGCATGCGGTTCATCTTGATTTATATTTTATAATCTGGTGATTCTGTCCAGATGATTATTGGTCTTA</gDNA_template>
            <first_frame> K  R  A  K  K  E  L  E  K  K  K  Q  I  W  A  L  H  S  A  L  V  M  L  L  S  T  S  R  I  F  P  P  A  *  L  R  R  F  S  *  R  S  A  L  L  S  G  D  G  T  S  A  *  Y  L  E  W  N  Q  H  P  F  L  P  P  A  A  P  A  L  P  P  S  A  P  L  L  P  A  A  M  R  P  Q  P  A  A  I  V  Q  R  R  A  R  L  P  I  R  W  F  S  M  L  F  Y  G  E  I  *  L  I  H  G  R  *  E  V  W  L  R  K  A  A  M  P  P  S  P  P  F  G  L  T  K  T  M  L  L  L  F  N  I  V  A  L  P  I  S  I  R  C  I  R :   *  P  L  K  *  R  V  K  P  R  Y  *  T  W  Q  K  S  *  K  L  G  A  L  L  I  N  C  G  L  N  N  Q  K  T  Y  Q  P  V  L  L  Q  N  L  I  Q  N  P  W  Y  L  H  F  S  R  S  *  N  F  V  N  D  E  F  Q  V  S  S  V  Y  V  I  L  T  Q  V  G  L  V  S  V  L  W  N  *  T  Y  L  L  M  M  S  Y  S  L  *  *  L  I  F  L  A  E  P  F  D  L  C  M  R  F  I  L  I  Y  I  L  *  S  G  D  S  V  Q  M  I  I  G  L  </first_frame>
            <second_frame>  K  G  Q  K  R  N  L  K  K  K  N  R  Y  G  H  S  I  L  L  S  L  C  F  S  Q  L  H  A  F  F  P  Q  L  S  S  G  D  S  V  N  V  Q  H  Y  F  P  A  T  E  R  R  R  S  I  S  N  G  I  N  I  H  F  S  L  R  R  L  R  H  Y  R  R  Q  R  H  C  C  R  R  R  C  D  H  N  R  Q  Q  *  Y  R  G  E  L  D  Y  R  Y  G  G  S  V  C  C  S  T  E  R  F  D  *  Y  M  A  V  R  K  C  G  Y  A  R  L  P  C  R  R  R  R  H  L  V  S  Q  R  R  C  C  Y  S  S  I  L  *  P  F  Q  Y  R  F  D  A  *   : G  N  P  *  S  E  G  *  N  P  D  I  E  L  G  R  K  A  K  S  W  G  H  C  S  *  T  V  D  *  T  T  R  K  H  T  N  L  S  C  Y  K  T  L  S  K  I  P  G  I  F  I  F  Q  E  A  K  T  L  *  M  M  N  F  K  C  R  P  F  M  *  Y  *  H  K  *  A  *  F  Q  C  Y  G  I  E  P  I  C  *  *  *  A  T  L  C  N  D  *  Y  F  L  L  N  P  L  T  F  A  C  G  S  S  *  F  I  F  Y  N  L  V  I  L  S  R  *  L  L  V  L </second_frame>
            <third_frame>   K  G  K  K  G  T  *  K  K  K  T  D  M  G  T  P  F  C  S  R  Y  A  S  L  N  F  T  H  F  S  P  S  L  A  P  A  I  Q  L  T  F  S  T  T  F  R  R  R  N  V  G  V  V  S  R  M  E  S  T  S  I  S  P  S  G  G  S  G  T  T  A  V  S  A  I  A  A  G  G  D  A  T  T  T  G  S  N  S  T  E  E  S  S  I  T  D  T  V  V  Q  Y  V  V  L  R  R  D  L  I  D  T  W  P  L  G  S  V  V  T  Q  G  C  H  A  A  V  A  A  I  W  S  H  K  D  D  A  V  T  L  Q  Y  C  S  P  S  N  I  D  S  M  H  K  :  V  T  L  E  V  K  G  E  T  Q  I  L  N  L  A  E  K  L  K  A  G  G  I  A  H  K  L  W  I  E  Q  P  E  N  I  P  T  C  L  A  T  K  P  Y  P  K  S  L  V  S  S  F  F  K  K  L  K  L  C  K  *  *  I  S  S  V  V  R  L  C  D  T  D  T  S  R  L  S  F  S  V  M  E  L  N  L  F  A  N  D  E  L  L  F  V  M  I  N  I  S  C  *  T  L  *  P  L  H  A  V  H  L  D  L  Y  F  I  I  W  *  F  C  P  D  D  Y  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95665" stop="95231"/>
                    <exon start="94100" stop="93918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKTDMGTPFCSRYASLNFTHFSPSLAPAIQLTFSTTFRRRNVGVVSRMESTSISPSGGSGTTAVSAIAAGGDATTTGSNSTEESSITDTVVQYVVLRRDLIDTWPLGSVVTQGCHAAVAAIWSHKDDAVTLQYCSPSNIDSMHKVTLEVKGETQILNLAEKLKAGGIAHKLWIEQPENIPTCLATKPYPKSLVSSFFKKLKLCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="100782" PGL_stop="101281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100782" e_stop="101281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="100782" e_stop="101281" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100782" stop="101281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100841" stop="101092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGATTATTCAGAGATTACCAGCTTTGGAGGCTGCTATAAGGCCAATTAGGGCTCAGAAAGATGCTCTTGGTGCTGTTGGGGGACATATTAATCGTGCTGTTGTCCCTGCGACGGCGGTGTTAAAAGTGTTTGATGCAATTCATGGACTAGAGAAGTCGTTGTCTGATCCTCAATCGGACCTCCCGGGGTACCTTGGTGTGCTTAAGAGGCTTGAAGAGGCATTAAGATTTTTAGGGGAGAATTGTGAGATGGCAATTCAGTGGTTGGCAGATATTGTAGAGTATCTAGAGGATCATGCAGTTGCTGATGACAGGTTTACTTTAAGTATGAAGGAGGCATTGACTTCTCTTAGGGAATTGCACAGTGGGGAGGAAAAGGGTCGGCTTGATGGAGGGCTTCTTGAGGTTGCGTTGGACAGATTGGAAAGTGAATTTCGACGGCTCTTGGTTGAAAATACTATTCCACTGCCAATGTCTGATCCAGCCTTGCCAGGTGAAC</gDNA_template>
            <first_frame> *  D  Y  S  E  I  T  S  F  G  G  C  Y  K  A  N  *  G  S  E  R  C  S  W  C  C  W  G  T  Y  *  S  C  C  C  P  C  D  G  G  V  K  S  V  *  C  N  S  W  T  R  E  V  V  V  *  S  S  I  G  P  P  G  V  P  W  C  A  *  E  A  *  R  G  I  K  I  F  R  G  E  L  *  D  G  N  S  V  V  G  R  Y  C  R  V  S  R  G  S  C  S  C  *  *  Q  V  Y  F  K  Y  E  G  G  I  D  F  S  *  G  I  A  Q  W  G  G  K  G  S  A  *  W  R  A  S  *  G  C  V  G  Q  I  G  K  *  I  S  T  A  L  G  *  K  Y  Y  S  T  A  N  V  *  S  S  L  A  R  *   </first_frame>
            <second_frame>  E  I  I  Q  R  L  P  A  L  E  A  A  I  R  P  I  R  A  Q  K  D  A  L  G  A  V  G  G  H  I  N  R  A  V  V  P  A  T  A  V  L  K  V  F  D  A  I  H  G  L  E  K  S  L  S  D  P  Q  S  D  L  P  G  Y  L  G  V  L  K  R  L  E  E  A  L  R  F  L  G  E  N  C  E  M  A  I  Q  W  L  A  D  I  V  E  Y  L  E  D  H  A  V  A  D  D  R  F  T  L  S  M  K  E  A  L  T  S  L  R  E  L  H  S  G  E  E  K  G  R  L  D  G  G  L  L  E  V  A  L  D  R  L  E  S  E  F  R  R  L  L  V  E  N  T  I  P  L  P  M  S  D  P  A  L  P  G  E  </second_frame>
            <third_frame>   R  L  F  R  D  Y  Q  L  W  R  L  L  *  G  Q  L  G  L  R  K  M  L  L  V  L  L  G  D  I  L  I  V  L  L  S  L  R  R  R  C  *  K  C  L  M  Q  F  M  D  *  R  S  R  C  L  I  L  N  R  T  S  R  G  T  L  V  C  L  R  G  L  K  R  H  *  D  F  *  G  R  I  V  R  W  Q  F  S  G  W  Q  I  L  *  S  I  *  R  I  M  Q  L  L  M  T  G  L  L  *  V  *  R  R  H  *  L  L  L  G  N  C  T  V  G  R  K  R  V  G  L  M  E  G  F  L  R  L  R  W  T  D  W  K  V  N  F  D  G  S  W  L  K  I  L  F  H  C  Q  C  L  I  Q  P  C  Q  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100783" stop="101280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIIQRLPALEAAIRPIRAQKDALGAVGGHINRAVVPATAVLKVFDAIHGLEKSLSDPQSDLPGYLGVLKRLEEALRFLGENCEMAIQWLADIVEYLEDHAVADDRFTLSMKEALTSLRELHSGEEKGRLDGGLLEVALDRLESEFRRLLVENTIPLPMSDPALPGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="101708" PGL_stop="102003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101708" e_stop="102003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="101708" e_stop="102003" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101708" stop="102003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTGTTGGACATATTTGCATCTTTAAACAAGTTAAGATTGGATTTCAATCGGCTCTTTGGTGGAACTGCGTGTTTGGAAATACAAAATTTGACTAGGGATTTGATCAAGAGTGTGATTGAAGGTGCTAGTGAGATCTTTTGGGAACTTCTGGTTCAAGTTGAGTTGCAAAGGCAAATGCCACCTCCACCTGATGGTACTGTTCCGAAACTTATCATTTTCATCACCGACTATTGCAATAAGTTGCTCGGGGATGATTATAAGTCTATCCTCACCCAAGTTCTGATTATTGAAAGA</gDNA_template>
            <first_frame> S  C  W  T  Y  L  H  L  *  T  S  *  D  W  I  S  I  G  S  L  V  E  L  R  V  W  K  Y  K  I  *  L  G  I  *  S  R  V  *  L  K  V  L  V  R  S  F  G  N  F  W  F  K  L  S  C  K  G  K  C  H  L  H  L  M  V  L  F  R  N  L  S  F  S  S  P  T  I  A  I  S  C  S  G  M  I  I  S  L  S  S  P  K  F  *  L  L  K   </first_frame>
            <second_frame>  A  V  G  H  I  C  I  F  K  Q  V  K  I  G  F  Q  S  A  L  W  W  N  C  V  F  G  N  T  K  F  D  *  G  F  D  Q  E  C  D  *  R  C  *  *  D  L  L  G  T  S  G  S  S  *  V  A  K  A  N  A  T  S  T  *  W  Y  C  S  E  T  Y  H  F  H  H  R  L  L  Q  *  V  A  R  G  *  L  *  V  Y  P  H  P  S  S  D  Y  *  K  </second_frame>
            <third_frame>   L  L  D  I  F  A  S  L  N  K  L  R  L  D  F  N  R  L  F  G  G  T  A  C  L  E  I  Q  N  L  T  R  D  L  I  K  S  V  I  E  G  A  S  E  I  F  W  E  L  L  V  Q  V  E  L  Q  R  Q  M  P  P  P  P  D  G  T  V  P  K  L  I  I  F  I  T  D  Y  C  N  K  L  L  G  D  D  Y  K  S  I  L  T  Q  V  L  I  I  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101710" stop="102003"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLDIFASLNKLRLDFNRLFGGTACLEIQNLTRDLIKSVIEGASEIFWELLVQVELQRQMPPPPDGTVPKLIIFITDYCNKLLGDDYKSILTQVLIIER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="109252" PGL_stop="107554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109252" e_stop="108526"/>
            <exon e_start="108353" e_stop="108228"/>
            <exon e_start="108049" e_stop="107677"/>
            <exon e_start="107572" e_stop="107554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109252" e_stop="108526" e_length="727"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.992">
            <gDNA_intron_boundary i_start="108525" i_stop="108354" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108353" e_stop="108228" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="108227" i_stop="108050" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108049" e_stop="107677" e_length="373"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107676" i_stop="107573" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="107572" e_stop="107554" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109252" stop="108526"/>
              <exon start="108353" stop="108228"/>
              <exon start="108049" stop="107677"/>
              <exon start="107572" stop="107554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108251" stop="108228"/>
              <exon start="108049" stop="107680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAG : GAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAG : GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCA : AAAAACAAATAAAAATTAA</gDNA_template>
            <first_frame> I  M  S  R  T  K  W  L  F  Y  Q  K  *  M  K  V  L  L  L  K  K  Q  L  P  P  V  *  N  Q  W  R  I  *  S  D  W  F  L  M  N  R  F  R  L  I  A  V  K  W  L  I  L  R  F  R  S  S  K  R  *  F  Q  F  W  T  G  P  V  M  L  G  S  G  E  D  R  F  R  L  R  L  R  L  R  F  R  L  E  L  R  F  V  V  R  F  I  L  I  R  L  L  R  C  L  L  L  R  R  *  A  L  L  R  R  R  R  D  L  L  R  R  *  A  L  L  R  R  R  R  D  R  W  C  R  C  R  R  R  *  R  L  T  F  R  S  *  M  L  T  V  R  S  G  I  Q  V  L  L  L  L  L  L  *  N  L  R  R  F  *  W  R  I  R  R  R  R  T  R  R  R  L  C  R  R  L  P  A  K  Q  L  Y  L  M  V  S  K  F  L  L  L  C  C  C  F  R  H  R  L  *  I  F  R  P  P  E  N  V  A  A  S  M  N  N  L  M  L  S  P  A  A  N  P  P  A  P  A  S  V  T  A  K  R   : G  K  L  R  I  G  K  *  L  G  F  R  R  *  V  R  G  W  L  I  Y  R  E  T  S  F  H  G  G  N  T  G  K  S  R  S  R  V  Q  N  T  Q   : G  V  I  T  S  V  A  A  Y  V  D  V  Q  Q  G  N  T  W  S  A  R  W  T  I  Q  R  C  *  L  *  L  M  K  M  N  I  V  I  I  Q  L  L  R  C  M  G  T  V  L  K  W  *  I  L  G  *  W  K  R  S  R  G  *  N  E  D  R  G  E  L  *  G  D  F  V  V  W  N  S  W  G  V  E  V  I  F  G  K  S  Y  K  G  *  K  S  R  E  *  E  V  V  G  I  G  L  L  C  K  F  G  K  I  L  G  V  E  R  E  K  K  R  K  V  S  Q :   K  T  N  K  N  * </first_frame>
            <second_frame>  S  *  V  E  P  N  G  C  F  I  K  N  E  *  K  F  C  C  *  R  S  S  F  R  R  F  E  I  N  G  E  F  N  P  I  G  F  S  *  T  G  S  G  *  L  P  *  N  G  *  F  Y  G  F  E  V  Q  K  G  D  F  N  F  G  P  D  R  S  C  S  V  P  A  R  T  G  S  G  S  G  S  G  S  G  S  G  *  S  S  G  S  W  S  G  L  S  *  F  V  Y  F  V  V  S  C  S  V  V  K  L  C  Y  G  E  G  E  T  C  S  V  V  K  L  C  F  G  E  G  E  T  G  G  A  G  A  D  G  V  D  A  *  L  F  E  A  E  C  *  P  S  D  R  E  F  K  C  F  Y  C  F  Y  C  E  I  *  G  G  F  N  G  G  S  D  A  D  E  L  V  V  V  Y  V  D  D  Y  R  R  S  N  C  I  *  W  *  A  S  F  F  F  Y  V  V  A  S  A  T  G  C  E  F  S  D  H  R  K  T  L  P  R  A  *  T  I  *  C  Y  L  R  Q  Q  I  H  R  L  R  Q  V  S  L  Q  K  E  :  E  S  *  G  S  E  S  D  *  D  S  G  D  K  Y  E  G  G  *  Y  T  G  R  R  V  F  M  E  E  I  R  A  K  A  D  Q  G  F  K  I  P  K  :  G  L  L  Q  V  *  Q  L  T  W  M  S  S  K  E  T  R  G  A  R  D  G  R  S  N  D  A  D  C  D  L  *  R  *  T  L  S  *  S  S  C  C  D  A  W  E  Q  F  S  N  G  E  F  W  V  N  G  K  E  V  G  G  E  M  K  I  E  E  S  C  R  V  I  L  *  F  G  I  V  G  G  L  K  L  Y  L  G  K  V  I  R  V  K  R  V  E  S  R  K  L  W  E  L  V  C  Y  V  N  L  E  R  F  *  G  L  K  E  K  K  K  E  K  F  R   : K  K  Q  I  K  I   </second_frame>
            <third_frame>   H  E  *  N  Q  M  A  V  L  S  K  M  N  E  S  F  A  V  E  E  A  A  S  A  G  L  K  S  M  E  N  L  I  R  L  V  S  H  E  P  V  Q  A  D  C  R  E  M  A  D  F  T  V  S  K  F  K  K  V  I  S  I  L  D  R  T  G  H  A  R  F  R  R  G  P  V  Q  A  Q  A  P  A  P  V  Q  V  R  A  P  V  R  G  P  V  Y  P  D  S  F  T  S  L  S  L  A  P  S  L  S  F  A  T  A  K  E  R  L  A  P  S  L  S  F  A  S  A  K  E  R  P  V  V  Q  V  Q  T  A  L  T  L  D  F  S  K  L  N  V  N  R  P  I  G  N  S  S  A  F  T  A  F  T  V  K  S  K  E  V  L  M  A  D  P  T  P  T  N  S  S  S  F  M  S  T  I  T  G  E  A  T  V  S  N  G  K  Q  V  S  S  S  M  L  L  L  P  P  Q  A  V  N  F  P  T  T  G  K  R  C  R  E  H  E  Q  S  D  A  I  S  G  S  K  S  T  G  S  G  K  C  H  C  K  K  R :   K  A  K  D  R  K  V  I  R  I  P  A  I  S  T  R  V  A  D  I  P  G  D  E  F  S  W  R  K  Y  G  Q  K  P  I  K  G  S  K  Y  P  R :   G  Y  Y  K  C  S  S  L  R  G  C  P  A  R  K  H  V  E  R  A  M  D  D  P  T  M  L  I  V  T  Y  E  D  E  H  C  H  N  P  V  A  A  M  H  G  N  S  S  Q  M  V  N  F  G  L  M  E  K  K  *  G  V  K  *  R  *  R  R  V  V  G  *  F  C  S  L  E  *  L  G  G  *  S  Y  I  W  E  K  L  *  G  L  K  E  *  R  V  G  S  C  G  N  W  F  V  M  *  I  W  K  D  F  R  G  *  K  R  K  K  K  K  S  F  A  :  K  N  K  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109241" stop="108526"/>
                    <exon start="108353" stop="108228"/>
                    <exon start="108049" stop="107869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMAVLSKMNESFAVEEAASAGLKSMENLIRLVSHEPVQADCREMADFTVSKFKKVISILDRTGHARFRRGPVQAQAPAPVQVRAPVRGPVYPDSFTSLSLAPSLSFATAKERLAPSLSFASAKERPVVQVQTALTLDFSKLNVNRPIGNSSAFTAFTVKSKEVLMADPTPTNSSSFMSTITGEATVSNGKQVSSSMLLLPPQAVNFPTTGKRCREHEQSDAISGSKSTGSGKCHCKKRKAKDRKVIRIPAISTRVADIPGDEFSWRKYGQKPIKGSKYPRGYYKCSSLRGCPARKHVERAMDDPTMLIVTYEDEHCHNPVAAMHGNSSQMVNFGLMEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="107667" PGL_stop="108287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107667" e_stop="108039"/>
            <exon e_start="108213" e_stop="108287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.725" acc_prob="0.877" e_score="0.979"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="107667" e_stop="108039" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.725" acc_prob="0.877">
            <gDNA_intron_boundary i_start="108040" i_stop="108212" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="108213" e_stop="108287" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107667" stop="108039"/>
              <exon start="108213" stop="108287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356630" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCAAAAATTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTT : GTACATTGTAATTACCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</gDNA_template>
            <first_frame> S  Q  K  L  R  N  F  S  F  F  F  S  F  N  P  *  N  L  S  K  F  T  *  Q  T  N  S  H  N  F  L  L  S  T  L  L  T  L  I  T  F  P  K  Y  N  F  N  P  P  T  I  P  N  Y  K  I  T  L  Q  L  S  S  I  F  I  S  P  P  T  S  F  P  L  T  Q  N  S  P  F  E  N  C  S  H  A  S  Q  Q  L  D  Y  D  N  V  H  L  H  K  S  Q  S  A  S  L  D  R  P  S  R  A  P  R  V  S  L  L  D  I  H  V  S  C  Y  T   : C  T  L  *  L  P  W  V  F  *  T  L  D  R  L  L  P  V  F  P  P  *  K  L  V  </first_frame>
            <second_frame>  V  K  N  C  E  T  F  L  F  F  S  L  S  T  P  K  I  F  P  N  L  H  N  K  P  I  P  T  T  S  Y  S  L  L  F  *  P  L  *  L  F  P  N  I  T  S  T  P  Q  L  F  Q  T  T  K  S  P  Y  N  S  P  L  S  S  F  H  P  L  L  L  F  H  *  P  K  I  H  H  L  R  T  V  P  M  H  R  S  N  W  I  M  T  M  F  I  F  I  S  H  N  Q  H  R  W  I  V  H  R  A  L  H  V  F  P  C  W  T  S  T  *  A  A  T  L  :  V  H  C  N  Y  L  G  Y  F  E  P  L  I  G  F  C  P  Y  F  L  H  E  N  S  S </second_frame>
            <third_frame>   S  K  I  A  K  L  F  F  F  F  L  F  Q  P  L  K  S  F  Q  I  Y  I  T  N  Q  F  P  Q  L  P  T  L  Y  S  F  N  P  Y  N  F  S  Q  I  *  L  Q  P  P  N  Y  S  K  L  Q  N  H  P  T  T  L  L  Y  L  H  F  T  P  Y  F  F  S  I  N  P  K  F  T  I  *  E  L  F  P  C  I  A  A  T  G  L  *  Q  C  S  S  S  *  V  T  I  S  I  V  G  S  S  I  A  R  S  T  C  F  L  A  G  H  P  R  K  L  L  H  L :   Y  I  V  I  T  L  G  I  L  N  P  *  S  A  F  A  R  I  S  S  M  K  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107736" stop="108039"/>
                    <exon start="108213" stop="108223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNSHNFLLSTLLTLITFPKYNFNPPTIPNYKITLQLSSIFISPPTSFPLTQNSPFENCSHASQQLDYDNVHLHKSQSASLDRPSRAPRVSLLDIHVSCYTCTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="118733" PGL_stop="115681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118733" e_stop="118610"/>
            <exon e_start="117329" e_stop="117219"/>
            <exon e_start="117106" e_stop="116948"/>
            <exon e_start="116294" e_stop="116151"/>
            <exon e_start="116052" e_stop="115681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118610" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118609" i_stop="117330" i_length="1280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117329" e_stop="117219" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117218" i_stop="117107" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117106" e_stop="116948" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="116947" i_stop="116295" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116294" e_stop="116151" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="116150" i_stop="116053" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="116052" e_stop="115681" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118733" stop="118610"/>
              <exon start="117329" stop="117219"/>
              <exon start="117106" stop="116948"/>
              <exon start="116294" stop="116151"/>
              <exon start="116052" stop="115846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118733" stop="118610"/>
              <exon start="117329" stop="117219"/>
              <exon start="117106" stop="116948"/>
              <exon start="116294" stop="116151"/>
              <exon start="116052" stop="115875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118732" stop="118610"/>
              <exon start="117329" stop="117219"/>
              <exon start="117106" stop="116948"/>
              <exon start="116294" stop="116183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118634" stop="118610"/>
              <exon start="117329" stop="117219"/>
              <exon start="117106" stop="116948"/>
              <exon start="116294" stop="116151"/>
              <exon start="116052" stop="115763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550101" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117325" stop="117219"/>
              <exon start="117106" stop="116948"/>
              <exon start="116294" stop="116151"/>
              <exon start="116052" stop="115736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117083" stop="116948"/>
              <exon start="116294" stop="116151"/>
              <exon start="116052" stop="115681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211928" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG : GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG : ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG : AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG : ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCATCTGTCTA</gDNA_template>
            <first_frame> R  I  C  F  S  K  L  E  R  S  K  Y  S  H  V  Y  C  H  Q  K  A  Y  A  T  C  C  T  S  S  W  I  L  Y  R  K  G  *  T  Y  N  S   : G  N  T  F  R  I  T  N  C  C  R  S  S  Y  C  S  S  W  R  F  F  L  *  S  F  W  I  Q  F  G  L  Y  F  C  F  L  P   : D  H  V  P  C  V  G  *  E  V  R  S  R  G  W  A  F  V  Y  *  D  H  V  L  Q  Q  F  L  I  F  A  I  S  A  I  P  H  H  S  H  R  R  I  S  K  F  F  I  S  F  I  C  K   : E  *  F  N  I  I  S  C  Y  S  Y  S  F  I  G  D  G  H  H  L  E  L  Y  D  V  L  V  H  H  R  *  L  G  F  N  Y  H  N  C  R  S  P  Q  R  S  W  I  Y   : D  T  W  F  C  P  V  G  R  S  R  G  T  C  F  E  C  H  W  F  S  D  Q  H  S  W  W  G  V  V  F  I  S  *  I  S  T  E  E  E  Q  I  A  *  D  N  V  R  Y  R  *  S  S  *  I  K  R  L  L  V  G  S  I  E  F  N  I  Y  N  F  L  P  S  Q  V  M  K  R  K  L  H  D  F  V  F  Q  S  I  F  D  S  Y  L  E  H  V  V  V  V  Y  M  *  T  L  K  M  L  Y  N  S  F  L  S  *  N  A  *  G  I  S  F  H  L  S  </first_frame>
            <second_frame>  G  F  A  L  A  S  L  K  G  V  N  I  P  M  Y  I  A  I  K  R  L  T  P  L  A  V  L  V  A  G  F  F  T  G  K  G  R  P  T  T  Q  :  V  T  L  S  V  L  L  I  A  A  G  V  L  I  A  A  L  G  D  F  S  F  D  L  F  G  Y  S  L  A  F  I  S  V  F  F  Q  :  T  M  Y  L  V  L  V  E  K  S  G  A  E  D  G  L  S  S  I  E  I  M  F  Y  N  S  F  L  S  L  P  F  L  L  F  L  I  I  A  T  G  E  F  P  N  S  L  S  L  L  F  A  K  :  S  S  S  I  S  F  L  A  I  L  I  L  S  L  V  M  G  I  I  L  N  Y  T  M  F  L  C  T  I  V  N  S  A  L  T  T  T  I  V  G  V  L  K  G  V  G  S  T  :  T  L  G  F  V  L  L  G  G  V  E  V  H  A  L  N  V  T  G  L  V  I  N  T  A  G  G  V  W  Y  S  L  A  K  Y  Q  Q  K  K  N  K  L  P  K  I  M  S  D  I  D  S  H  R  K  *  K  D  C  *  L  V  P  *  S  S  I  F  I  I  F  F  L  H  K  L  *  R  E  N  Y  M  I  L  F  F  N  Q  F  L  I  V  T  L  N  M  *  L  L  F  T  C  K  H  *  K  C  C  T  T  L  F  C  L  E  M  L  R  V  F  L  F  I  C  L </second_frame>
            <third_frame>   D  L  L  *  Q  A  *  K  E  *  I  F  P  C  I  L  P  S  K  G  L  R  H  L  L  Y  *  *  L  D  S  L  P  E  R  V  D  L  Q  L  R :   *  H  F  P  Y  Y  *  L  L  P  E  F  L  L  Q  L  L  E  I  F  P  L  I  F  L  D  T  V  W  P  L  F  L  F  S  S  R :   P  C  T  L  C  W  L  R  S  Q  E  Q  R  M  G  F  R  L  L  R  S  C  F  T  T  V  S  Y  L  C  H  F  C  Y  S  S  S  *  P  Q  E  N  F  Q  I  L  Y  L  F  Y  L  Q  R :   V  V  Q  Y  H  F  L  L  F  L  F  F  H  W  *  W  A  S  S  *  T  I  R  C  S  C  A  P  S  L  T  R  L  *  L  P  Q  L  S  E  S  S  K  E  L  D  L  R :   H  L  V  L  S  C  W  E  E  *  R  Y  M  L  *  M  S  L  V  *  *  S  T  Q  L  V  G  C  G  I  H  *  L  N  I  N  R  R  R  T  N  C  L  R  *  C  P  I  S  I  V  I  V  N  K  K  I  A  S  W  F  H  R  V  Q  Y  L  *  F  S  S  F  T  S  Y  E  E  K  T  T  *  F  C  F  S  I  N  F  *  *  L  P  *  T  C  S  C  C  L  H  V  N  I  E  N  V  V  Q  L  F  F  V  L  K  C  L  G  Y  F  F  S  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118732" stop="118610"/>
                    <exon start="117329" stop="117219"/>
                    <exon start="117106" stop="116948"/>
                    <exon start="116294" stop="116151"/>
                    <exon start="116052" stop="115888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFALASLKGVNIPMYIAIKRLTPLAVLVAGFFTGKGRPTTQVTLSVLLIAAGVLIAALGDFSFDLFGYSLAFISVFFQTMYLVLVEKSGAEDGLSSIEIMFYNSFLSLPFLLFLIIATGEFPNSLSLLFAKSSSISFLAILILSLVMGIILNYTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHALNVTGLVINTAGGVWYSLAKYQQKKNKLPKIMSDIDSHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="115681" PGL_stop="116045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115681" e_stop="116045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="115681" e_stop="116045" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115681" stop="116045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115725" stop="115917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACAGATGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</gDNA_template>
            <first_frame> *  T  D  E  K  K  Y  P  K  H  F  K  T  K  K  S  C  T  T  F  S  M  F  T  C  K  Q  Q  L  H  V  Q  G  N  Y  Q  K  L  I  E  K  Q  N  H  V  V  F  S  S  *  L  V  K  E  E  N  Y  K  Y  *  T  L  W  N  Q  L  A  I  F  L  F  T  M  T  I  D  I  G  H  Y  L  R  Q  F  V  L  L  L  L  I  F  S  *  *  I  P  H  P  T  S  C  V  D  H  *  T  S  D  I  Q  S  M  Y  L  Y  S  S  Q  Q  D  K   </first_frame>
            <second_frame>  R  Q  M  K  R  N  T  L  S  I  S  R  Q  K  R  V  V  Q  H  F  Q  C  L  H  V  N  N  N  Y  M  F  K  V  T  I  K  N  *  L  K  N  K  I  M  *  F  S  L  H  N  L  *  R  K  K  I  I  N  I  E  L  Y  G  T  N  *  Q  S  F  Y  L  R  *  L  S  I  S  D  I  I  L  G  N  L  F  F  F  C  *  Y  L  A  N  E  Y  H  T  P  P  A  V  L  I  T  K  P  V  T  F  K  A  C  T  S  T  P  P  N  R  T  K  </second_frame>
            <third_frame>   D  R  *  K  E  I  P  *  A  F  Q  D  K  K  E  L  Y  N  I  F  N  V  Y  M  *  T  T  T  T  C  S  R  *  L  S  K  I  D  *  K  T  K  S  C  S  F  L  F  I  T  C  E  G  R  K  L  *  I  L  N  S  M  E  P  T  S  N  L  F  I  Y  D  D  Y  R  Y  R  T  L  S  *  A  I  C  S  S  S  V  D  I  *  L  M  N  T  T  P  H  Q  L  C  *  S  L  N  Q  *  H  S  K  H  V  P  L  L  L  P  T  G  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0071M19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="120986" PGL_stop="120091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120986" e_stop="120091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="120986" e_stop="120091" e_length="896"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120986" stop="120373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120941" stop="120413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120771" stop="120091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120739" stop="120194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGTTGTTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</gDNA_template>
            <first_frame> F  F  F  V  S  C  R  *  K  W  P  M  V  I  I  N  K  Q  N  I  L  I  I  I  T  K  R  S  L  F  F  Y  T  K  F  Q  D  F  F  F  L  T  L  S  T  L  Q  T  A  *  S  K  K  N  K  Y  F  F  Q  L  L  Y  T  Q  K  N  H  V  I  T  R  I  F  I  Y  T  Y  R  *  R  R  *  L  L  L  F  W  E  V  G  I  V  I  L  G  V  I  F  H  F  C  A  K  D  L  F  L  S  *  L  K  A  V  S  E  V  G  V  L  P  F  P  S  F  V  L  R  L  *  R  F  Q  *  I  *  C  E  R  F  V  F  L  V  N  *  *  L  V  S  E  V  G  I  V  V  L  S  F  S  L  S  G  C  L  M  F  S  N  F  V  L  *  L  *  R  F  Q  *  F  *  C  V  K  I  *  F  *  V  N  *  K  L  V  S  E  V  G  I  V  L  L  G  F  F  L  Y  G  C  F  S  F  S  N  F  V  L  K  L  *  R  F  R  *  I  G  A  E  D  L  F  L  S  *  L  K  G  V  L  S  S  I  E  Q  S  *  A  E  I  D  L  V  S  R  F  G  V  H  V  I  F  F  L  A  F  I  S  I  W  L  L  F  F  L  *  F  L  D  S  I  A  D  F  F  F  V  *  I  K  D  C  Q  *  S  K  *  *  A  V   </first_frame>
            <second_frame>  F  S  L  L  A  A  D  K  N  G  L  W  S  S  S  T  N  K  I  Y  *  *  *  *  Q  K  D  P  F  F  F  T  P  N  S  K  I  F  F  F  *  H  S  L  H  Y  R  L  L  D  P  K  K  I  N  I  F  F  N  C  Y  I  L  R  K  I  M  *  S  R  E  F  L  Y  I  L  I  D  K  G  G  N  F  C  Y  F  G  K  W  V  L  *  F  W  G  *  F  S  I  F  V  Q  K  I  C  F  *  V  N  *  K  L  Y  L  K  W  V  F  Y  L  F  P  V  L  C  F  D  Y  R  D  F  S  K  F  S  V  K  D  L  F  F  *  L  I  D  S  L  Y  L  K  W  V  L  W  F  *  V  F  P  Y  L  G  V  *  C  F  L  I  L  C  F  D  Y  R  D  F  S  N  F  S  V  L  R  F  D  F  E  L  I  E  S  L  Y  L  K  W  G  L  C  F  W  V  F  S  Y  M  G  V  F  H  F  L  I  S  C  L  S  Y  R  D  F  D  K  L  V  Q  K  I  C  F  *  V  D  *  K  V  Y  *  A  Q  L  S  N  L  K  Q  R  L  I  W  L  A  D  L  E  C  M  *  Y  F  F  W  L  L  Y  Q  S  G  C  C  S  F  Y  N  F  L  I  Q  L  Q  I  F  F  L  C  K  *  R  T  V  N  E  V  S  D  K  L  S  </second_frame>
            <third_frame>   F  L  C  *  L  P  I  K  M  A  Y  G  H  H  Q  Q  T  K  Y  I  N  N  N  N  K  K  I  P  F  F  L  H  Q  I  P  R  F  F  F  F  N  T  L  Y  T  T  D  C  L  I  Q  K  K  *  I  F  F  S  I  V  I  Y  S  E  K  S  C  N  H  E  N  F  Y  I  Y  L  *  I  K  E  V  T  F  A  I  L  G  S  G  Y  C  D  F  G  G  D  F  P  F  L  C  K  R  S  V  F  E  L  I  E  S  C  I  *  S  G  C  F  T  F  S  Q  F  C  A  S  I  I  E  I  S  V  N  L  V  *  K  I  C  F  F  S  *  L  I  A  C  I  *  S  G  Y  C  G  F  E  F  F  L  I  W  V  F  D  V  F  *  F  C  A  L  I  I  E  I  S  V  I  L  V  C  *  D  L  I  L  S  *  L  K  A  C  I  *  S  G  D  C  A  F  G  F  F  L  I  W  V  F  F  I  F  *  F  R  A  *  V  I  E  I  S  I  N  W  C  R  R  F  V  F  E  L  I  E  R  C  I  E  L  N  *  A  I  L  S  R  D  *  F  G  *  Q  I  W  S  A  C  D  I  F  F  G  F  Y  I  N  L  V  V  V  L  F  I  I  S  *  F  N  C  R  F  F  F  C  V  N  K  G  L  S  M  K  *  V  I  S  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0071M19.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120493" stop="120293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFLILCFDYRDFSNFSVLRFDFELIESLYLKWGLCFWVFSYMGVFHFLISCLSYRDFDKLVQKICF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 267 chains have been computed
$ 
$ memory statistics:
$ 1183408 bytes spliced alignments in total
$ 196 spliced alignments have been stored
$ 6037 bytes was the average size of a spliced alignment
$ 38648 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1545 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 312 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 21:04:07
-->
